cran: ggplot2 | Projects | Ecosyste.ms: Papers

10.1002/ece3.5970

A checklist for choosing between R packages in ecology and evolution
Cited by: 8
Author(s): Christopher J. Lortie, Jenna Braun, Alessandro Filazzola, M. Florencia Miguel
Software Mentions: 5
Published: over 6 years ago

10.1002/ece3.6477

Advancing biodiversity assessments with environmental DNA: Long‐read technologies help reveal the drivers of Amazonian fungal diversity
Cited by: 23
Author(s): Camila Duarte Ritter, Micah Dunthorn, Sten Anslan, Vítor Xavier de Lima, Leho Tedersoo, R. Henrik Nilsson, Alexandre Antonelli
Software Mentions: 5
Published: about 6 years ago

10.1002/ece3.6535

Trophic level and basal resource use of soil animals are hardly affected by local plant associations in abandoned arable land
Cited by: 0
Author(s): Jörg‐Alfred Salamon, Janet Wissuwa, Thomas Frank, Stefan Scheu, Anton Potapov
Software Mentions: 5
Published: almost 6 years ago

10.1002/ece3.7098

Complex postbreeding molt strategies in a songbird migrating along the East Asian Flyway, the Pallas’s Grasshopper Warbler Locustella certhiola
Cited by: 5
Author(s): Hans‐Jürgen Eilts, Nele Feuerbach, Philip D. Round, O. V. Bourski, John A Allcock, Paul J. Leader, Batmunkh Davaasuren, Tuvshinjargal Erdenechimeg, Jong‐Gil Park, Wieland Heim
Software Mentions: 5
Published: over 5 years ago

10.1002/ece3.6836

Don’t stand so close to me: Microbiota‐facilitated enemy release dynamics in introduced Onthophagus taurus dung beetles
Cited by: 5
Author(s): Erik Parker, Armin P. Moczek
Software Mentions: 5
Published: over 5 years ago

10.1002/ece3.6806

Consequences of multiple imputation of missing standard deviations and sample sizes in meta‐analysis
Cited by: 21
Author(s): Stephan Kambach, Helge Bruelheide, Katharina Gerstner, Jessica Gurevitch, Michael Beckmann, Ralf Seppelt
Software Mentions: 5
Published: over 5 years ago

10.1002/ece3.7085

Evidence of postbreeding prospecting in a long‐distance migrant
Cited by: 7
Author(s): Max Ciaglo, Ross Calhoun, Scott W. Yanco, Michael B. Wunder, Craig A. Stricker, Brian D. Linkhart
Software Mentions: 5
Published: over 5 years ago

10.1002/ece3.6196

Competition with insectivorous ants as a contributor to low songbird diversity at low elevations in the eastern Himalaya
Cited by: 12
Author(s): K. Supriya, Trevor D. Price, Corrie S. Moreau
Software Mentions: 5
Published: about 6 years ago

10.1002/ece3.7633

Prey preferences of the chimpanzee (Pan troglodytes)
Cited by: 2
Author(s): Cassandra K. Bugir, Thomas M. Butynski, Matt Hayward
Software Mentions: 5
Published: about 5 years ago

10.1002/ece3.5890

Plant functional traits differ in adaptability and are predicted to be differentially affected by climate change
Cited by: 61
Author(s): Collin W. Ahrens, Margaret E. Andrew, Richard Mazanec, Katinka X. Ruthrof, Anthea Challis, G.E.St.J. Hardy, Margaret Byrne, David T. Tissue, Paul D. Rymer
Software Mentions: 5
Published: over 6 years ago

10.1002/ece3.4928

Interactions among morphotype, nutrition, and temperature impact fitness of an invasive fly
Cited by: 22
Author(s): Dalila Rendon, Vaughn M. Walton, Gabriella Tait, Jessica Z. Buser, Ivana Lemos Souza, Anna Wallingford, Greg Loeb, Jana C. Lee
Software Mentions: 5
Published: over 7 years ago

10.1002/ece3.6273

Cones structure and seed traits of four species of large‐seeded pines: Adaptation to animal‐mediated dispersal
Cited by: 1
Author(s): Manyu Zhang, Chang-Xiang Su, Changhu Lu
Software Mentions: 5
Published: about 6 years ago

10.1002/ece3.5580

Matrotrophic viviparity constrains microbiome acquisition during gestation in a live‐bearing cockroach, Diploptera punctata
Cited by: 6
Author(s): Emily C. Jennings, Matthew W. Korthauer, Trinity L. Hamilton, Joshua B. Benoit
Software Mentions: 5
Published: almost 7 years ago

10.1097/MD.0000000000016477

Comparative effectiveness of different forms of traditional Chinese medicine for treatment of post-stroke depression
Cited by: 4
Author(s): Huiling Chen, Meidan Zhao, Xiuming Li, Yanhong Zhang, Hui Yu, Ergang Xiao, Weizhen Gao, Hongwu Wang
Software Mentions: 5
Published: almost 7 years ago

10.1002/ece3.2592

Size differences of Arctic marine protists between two climate periods—using the paleoecological record to assess the importance of within‐species trait variation
Cited by: 12
Author(s): Erik Askov Mousing, Sofia Ribeiro, Chelsea Chisholm, Antoon Kuijpers, Matthias Moros, Marianne Ellegaard
Software Mentions: 5
Published: over 9 years ago

10.1002/ece3.6308

Oxidative stress delays development and alters gene expression in the agricultural pest moth, Helicoverpa armigera
Cited by: 7
Author(s): Nonthakorn Apirajkamol, Bill James, Karl Gordon, Tom Walsh, Angela McGaughran
Software Mentions: 5
Published: about 6 years ago

10.1002/ece3.7220

Does parental angling selection affect the behavior or metabolism of brown trout parr?
Cited by: 4
Author(s): Jenni M. Prokkola, Nico Alioravainen, Lauri Mehtätalo, Pekka Hyvärinen, Alexandre Lemopoulos, Sara Metso, Anssi Vainikka
Software Mentions: 5
Published: over 5 years ago

10.1002/ece3.5422

Estimating seed dispersal distance: A comparison of methods using animal movement and plant genetic data on two primate‐dispersed Neotropical plant species
Cited by: 10
Author(s): Tiziana A. Gelmi‐Candusso, Ronald Bialozyt, Darja Slana, Ricardo Zárate Gómez, Eckhard W. Heymann, Katrin Heer
Software Mentions: 5
Published: almost 7 years ago

10.1002/ece3.1958

Scale dependence of sex ratio in wild plant populations: implications for social selection
Cited by: 5
Author(s): Brian J. Sanderson, Malcolm E. Augat, Douglas R. Taylor, Edmund D. Brodie
Software Mentions: 5
Published: over 10 years ago

10.1002/ece3.6754

Survival and cause‐specific mortality of harvested willow ptarmigan (Lagopus lagopus) in central Norway
Cited by: 3
Author(s): Markus Fjellstad Israelsen, Lasse Eriksen, Pål Fossland Moa, Bjørn-Roar Hagen, Erlend B. Nilsen
Software Mentions: 5
Published: almost 6 years ago

10.1002/ece3.7141

Limited heat tolerance in an Arctic passerine: Thermoregulatory implications for cold‐specialized birds in a rapidly warming world
Cited by: 15
Author(s): Ryan S. O’Connor, Audrey Le Pogam, Kevin G. Young, Francis Robitaille, Emily S. Choy, Oliver P. Love, Kyle H. Elliott, Anna L. Hargreaves, Dominique Berteaux, Andrew Tam, François Vézina
Software Mentions: 5
Published: over 5 years ago

10.1002/ece3.1923

Female Salix viminalis are more severely infected by Melampsora spp. but neither sex experiences associational effects
Cited by: 33
Author(s): Kim Karlsson Moritz, Christer Björkman, Amy L. Parachnowitsch, Johan A. Stenberg
Software Mentions: 5
Published: over 10 years ago

10.3390/metabo9060113

Cerebral Vitamin B5 (D-Pantothenic Acid) Deficiency as a Potential Cause of Metabolic Perturbation and Neurodegeneration in Huntington’s Disease
Cited by: 46
Author(s): Stefano Patassini, Paul Begley, Jiaolong Xu, Stephanie J. Church, Nina Kureishy, Suzanne J. Reid, Henry J. Waldvogel, Richard L.M. Faull, Russell G. Snell, Richard D. Unwin, Garth J. S. Cooper
Software Mentions: 5
Published: about 7 years ago

10.1002/ece3.6094

Neighboring trees regulate the root‐associated pathogenic fungi on the host plant in a subtropical forest
Cited by: 6
Author(s): Ke-Ke Cheng, Shixiao Yu
Software Mentions: 5
Published: about 6 years ago

10.1002/ece3.6899

Insights into the genetic basis of predator‐induced response inDaphnia galeata
Cited by: 9
Author(s): Verena Tams, Jana Nickel, Anne Ehring, Mathilde Cordellier
Software Mentions: 5
Published: over 5 years ago

10.1111/ele.13497

Plant community composition steers grassland vegetation via soil legacy effects
Cited by: 68
Author(s): Robin Heinen, S. Emilia Hannula, Jonathan R. De Long, Martine Huberty, Renske Jongen, Anna M. Kielak, Katja Steinauer, Feng Zhu, T. Martijn Bezemer
Software Mentions: 5
Published: about 6 years ago

10.3389/fcell.2021.648806

Construction of a Prognostic Immune-Related LncRNA Risk Model for Lung Adenocarcinoma
Cited by: 16
Author(s): Yue Li, Ruoyi Shen, Anqi Wang, Jian Zhao, Jieqi Zhou, Weijie Zhang, Ruochen Zhang, Jianjie Zhu, Zeyi Liu, Jian-An Huang
Software Mentions: 5
Published: over 5 years ago

10.3390/metabo10050212

An NMR-Based Approach to Identify Urinary Metabolites Associated with Acute Physical Exercise and Cardiorespiratory Fitness in Healthy Humans—Results of the KarMeN Study
Cited by: 10
Author(s): Sina Kistner, M Rist, Maik Döring, Claudia Dörr, Rainer Neumann, Sascha Härtel, Achim Bub
Software Mentions: 5
Published: about 6 years ago

10.3389/fcimb.2020.00072

Mucosal Microbiome Profiles Polygenic Irritable Bowel Syndrome in Mestizo Individuals
Cited by: 4
Author(s): René Arredondo‐Hernández, Max Schmulson, Patricia Orduña, Gamaliel López-Leal, Ángel-Mario Zárate, Gerardo J. Alanis-Funes, Luis David Alcaraz, Rubí Santiago-Cruz, Miguel A. Cevallos, Antonio Villa, Samuel Ponce-de-León Rosales, Yolanda López‐Vidal, Consorcio Mexicano para el Estudio del Microbioma Humano
Software Mentions: 5
Published: over 6 years ago

10.3389/fcimb.2018.00043

High-Throughput Quantification of Bacterial-Cell Interactions Using Virtual Colony Counts
Cited by: 10
Author(s): Stefanie Hoffmann, Steffi Walter, Anne-Kathrin Blume, Stephan Fuchs, Christiane Schmidt, Annemarie Scholz, Roman G. Gerlach
Software Mentions: 5
Published: over 8 years ago

10.3389/fcimb.2021.579766

Preterm Birth Is Correlated With Increased Oral Originated Microbiome in the Gut
Cited by: 14
Author(s): Yin Chen, Jingrui Chen, Xiaoyi Wu, Ye-Ling Liu, He Qian, Ying Cao, Yie Huang, Sisun Liu
Software Mentions: 5
Published: about 5 years ago

10.3389/fcimb.2021.654074

Intestinal Microbiota Mediates High-Fructose and High-Fat Diets to Induce Chronic Intestinal Inflammation
Cited by: 30
Author(s): Rong Tan, Huiwei Dong, Zhengshan Chen, Min Jin, Jing Yin, Haibei Li, Danyang Shi, Yi-fan Shao, Huaran Wang, Tianjiao Chen, Dong Yang, Jùnwén Lǐ
Software Mentions: 5
Published: about 5 years ago

10.3389/fcimb.2021.714162

Characterization of the Oral and Esophageal Microbiota in Esophageal Precancerous Lesions and Squamous Cell Carcinoma
Cited by: 12
Author(s): Zhengqi Li, Lizhou Dou, Yueming Zhang, Shasha He, Di Zhao, Cui Hao, Gonghua Song, Wei Zhang, Yong Liu, Guiqi Wang
Software Mentions: 5
Published: almost 5 years ago

10.3389/fchem.2020.00243

An Innovative Sequence-to-Structure-Based Approach to Drug Resistance Interpretation and Prediction: The Use of Molecular Interaction Fields to Detect HIV-1 Protease Binding-Site Dissimilarities
Cited by: 4
Author(s): Nuno G. Alves, Ana I. Mata, João Luís, Rui M. M. Brito, Carlos J. V. Simões
Software Mentions: 5
Published: about 6 years ago

10.3389/fendo.2020.00023

Higher Blood Urea Nitrogen and Urinary Calcium: New Risk Factors for Diabetes Mellitus in Primary Aldosteronism Patients
Cited by: 12
Author(s): Yu Liu, Liang Zhou, Zhenghuan Liu, Yucheng Ma, Lede Lin, Ye Zhu, Kunjie Wang, Hong Li
Software Mentions: 5
Published: over 6 years ago

10.3389/fendo.2021.632492

Decreased Treg Cell and TCR Expansion Are Involved in Long-Lasting Graves’ Disease
Cited by: 7
Author(s): Ziyi Chen, Yufeng Liu, Shiqian Hu, Meng Zhang, Bingyin Shi, Yue Wang
Software Mentions: 5
Published: about 5 years ago

10.3389/fgene.2019.01333

A Novel Prognostic Index Based on Alternative Splicing in Papillary Renal Cell Carcinoma
Cited by: 2
Author(s): Zhipeng Wu, Jinhui Liu, Rui Sun, Dongming Chen, Kai Wang, Changchun Cao, Xianlin Xu
Software Mentions: 5
Published: over 6 years ago

10.3389/fgene.2020.00863

N6-Methyladenosine RNA Methylation Regulators Have Clinical Prognostic Values in Hepatocellular Carcinoma
Cited by: 4
Author(s): Wei Liu, Cuiqing Zhong, Deguan Lv, Mengjie Tang, Feng Xie
Software Mentions: 5
Published: almost 6 years ago

10.3389/fgene.2020.595361

Identification of Hub Prognosis-Associated Oxidative Stress Genes in Pancreatic Cancer Using Integrated Bioinformatics Analysis
Cited by: 8
Author(s): Xin Qiu, Qin-Han Hou, Qiuyue Shi, Haixing Jiang, Shanyu Qin
Software Mentions: 5
Published: over 5 years ago

10.3389/fgene.2020.602542

Integrated Analysis of lncRNA-Mediated ceRNA Network Reveals a Prognostic Signature for Hepatocellular Carcinoma
Cited by: 7
Author(s): Jian-Rong Sun, Chen-Fan Kong, Kunmin Xiao, Jia-Lu Yang, Xiang-Ke Qu, Jinghui Sun
Software Mentions: 5
Published: over 5 years ago

10.3389/fmicb.2019.01491

Genomic Characterization of Jumbo Salmonella Phages That Effectively Target United Kingdom Pig-Associated Salmonella Serotypes
Cited by: 26
Author(s): Anisha M. Thanki, Nathan Brown, Andrew Millard, Martha R. J. Clokie
Software Mentions: 5
Published: almost 7 years ago

10.3389/fmicb.2018.02227

Analysis of the Rumen Microbiome and Metabolome to Study the Effect of an Antimethanogenic Treatment Applied in Early Life of Kid Goats
Cited by: 19
Author(s): Leticia Abecia, Gonzalo Martínez Fernández, Kate Waddams, A. I. Martin-García, Eric Pinloche, Christopher J. Creevey, Stuart E. Denman, C. J. Newbold, D. R. Yáñez-Ruíz
Software Mentions: 5
Published: over 7 years ago

10.3389/fmicb.2018.00922

Enrichment of Bacteria From Eastern Mediterranean Sea Involved in Lignin Degradation via the Phenylacetyl-CoA Pathway
Cited by: 20
Author(s): Hyun-Joo Woo, Terry C. Hazen
Software Mentions: 5
Published: about 8 years ago

10.3389/fmicb.2020.01757

The Composition of Microbial Communities in Six Streams, and Its Association With Environmental Conditions, and Foodborne Pathogen Isolation
Cited by: 9
Author(s): Taejung Chung, Daniel Weller, Jasna Kovač
Software Mentions: 5
Published: almost 6 years ago

10.3389/fmicb.2020.559728

Dynamic Changes in the Microbiome of Rice During Shoot and Root Growth Derived From Seeds
Cited by: 21
Author(s): Mengying Wang, Alexander W. Eyre, Michael R. Thon, Yeonyee Oh, Ralph A. Dean
Software Mentions: 5
Published: almost 6 years ago

10.3389/fmicb.2021.646124

Soil pH and Organic Carbon Properties Drive Soil Bacterial Communities in Surface and Deep Layers Along an Elevational Gradient
Cited by: 25
Author(s): Qifeng Tian, Ying Jiang, Yanan Tang, Yu Wu, Zhiyao Tang, Feng Liu
Software Mentions: 5
Published: almost 5 years ago

10.3389/fmicb.2021.660190

Relationships Between the Microbial Composition and the Geochemistry and Mineralogy of the Cobalt-Bearing Legacy Mine Tailings in Northeastern Ontario
Cited by: 5
Author(s): Brittaney Courchesne, Michael Schindler, Nadia Mykytczuk
Software Mentions: 5
Published: almost 5 years ago

10.3389/fmicb.2018.00785

SplinectomeR Enables Group Comparisons in Longitudinal Microbiome Studies
Cited by: 44
Author(s): Robin R. Shields-Cutler, Gabe A. Al-Ghalith, Moran Yassour, Dan Knights
Software Mentions: 5
Published: about 8 years ago

10.3389/fmicb.2018.02015

The RNA Complement of Outer Membrane Vesicles From Salmonella enterica Serovar Typhimurium Under Distinct Culture Conditions
Cited by: 46
Author(s): Antoine Malabirade, Janine Habier, Anna Heintz‐Buschart, Patrick May, Julien Godet, Rashi Halder, Alton Etheridge, David J. Galas, Paul Wilmes, Joëlle V. Fritz
Software Mentions: 5
Published: almost 8 years ago

10.3389/fmicb.2021.647861

Nutrient Exposure Alters Microbial Composition, Structure, and Mercury Methylating Activity in Periphyton in a Contaminated Watershed
Cited by: 4
Author(s): Alyssa A. Carrell, Grace E. Schwartz, Melissa Cregger, Caitlin M. Gionfriddo, Dwayne A. Elias, Regina L. Wilpiszeski, Dawn M. Klingeman, Ann M. Wymore, Katherine A. Muller, Scott C. Brooks
Software Mentions: 5
Published: over 5 years ago

10.3389/fmicb.2017.00398

Transcriptomics Indicates Active and Passive Metronidazole Resistance Mechanisms in Three Seminal Giardia Lines
Cited by: 30
Author(s): Brendan R E Ansell, Louise Baker, Samantha J. Emery, Malcolm J. McConville, Staffan G. Svärd, Robin B. Gasser, Aaron R. Jex
Software Mentions: 5
Published: over 9 years ago

10.3389/fmicb.2018.01526

Bioprospecting and Structure of Fungal Endophyte Communities Found in the Brazilian Biomes, Pantanal, and Cerrado
Cited by: 34
Author(s): Sandriele Aparecida Noriler, Daiani Cristina Savi, Rodrigo Aluízio, Angela María Palacio-Cortés, Yvelise Maria Possiede, Chirlei Glienke
Software Mentions: 5
Published: almost 8 years ago

10.3389/fmolb.2019.00115

Diazotroph Diversity and Nitrogen Fixation in Summer Active Perennial Grasses in a Mediterranean Region Agricultural Soil
Cited by: 26
Author(s): Vadakattu V. S. R. Gupta, Bangzhou Zhang, C. Ryan Penton, Julian Yu, James M. Tiedje
Software Mentions: 5
Published: over 6 years ago

10.3389/fmolb.2021.633299

Identification of Lymph Node Metastasis–Related Key Genes and Prognostic Risk Model in Bladder Cancer by Co-Expression Analysis
Cited by: 8
Author(s): Cheng Luo, Bin Huang, Yukun Wu, Yadong Xu, Wei Ou, Junxing Chen, Lingwu Chen
Software Mentions: 5
Published: almost 5 years ago

10.3389/fmolb.2020.576298

Identification of Immune-Related Genes MSR1 and TLR7 in Relation to Macrophage and Type-2 T-Helper Cells in Osteosarcoma Tumor Micro-Environments as Anti-metastasis Signatures
Cited by: 10
Author(s): Zhiyu Chen, Huanhuan Huang, Yang Wang, Fangbiao Zhan, Zhengxue Quan
Software Mentions: 5
Published: over 5 years ago

10.3389/fmolb.2021.621232

Six Metabolism Related mRNAs Predict the Prognosis of Patients With Hepatocellular Carcinoma
Cited by: 6
Author(s): Xiwen Wu, Tian Lan, Muqi Li, Junfeng Liu, Xukun Wu, Shunli Shen, Wei Chen, Baogang Peng
Software Mentions: 5
Published: over 5 years ago

10.3389/fncir.2019.00032

A Novel Type of Neuron Within the Dorsal Striatum
Cited by: 16
Author(s): Miaomiao Mao, Aditya Nair, George J Augustine
Software Mentions: 5
Published: about 7 years ago

10.3389/fninf.2013.00013

White matter fiber tracking directed by interpolating splines and a methodological framework for evaluation
Cited by: 4
Author(s): Are Losnegård, Arvid Lundervold, Erlend Hodneland
Software Mentions: 5
Published: over 13 years ago

10.3389/fneur.2019.00103

Vocational Rehabilitation in Mild Traumatic Brain Injury: Supporting Return to Work and Daily Life Functioning
Cited by: 6
Author(s): Frederik Lehman Dornonville de la Cour, Morten Arendt Rasmussen, Eva Meldal Foged, Line Svenning Jensen, Trine Schow
Software Mentions: 5
Published: over 7 years ago

10.3389/fneur.2016.00238

A Review of the Segmental Diameter of the Healthy Human Spinal Cord
Cited by: 50
Author(s): Arvid Frostell, Ramil Hakim, Eric Peter Thelin, Per Mattsson, Mikael Svensson
Software Mentions: 5
Published: over 9 years ago

10.1111/1751-7915.13441

Direct effects of organic pollutants on the growth and gene expression of the Baltic Sea model bacterium Rheinheimera sp. <scp>BAL</scp>341
Cited by: 12
Author(s): Christofer M. G. Karlsson, Elena Cerro‐Gálvez, Daniel Lundin, Camilla Karlsson, Maria Vila‐Costa, Jarone Pinhassi
Software Mentions: 5
Published: almost 7 years ago

10.3389/fneur.2020.546744

LesionQuant for Assessment of MRI in Multiple Sclerosis—A Promising Supplement to the Visual Scan Inspection
Cited by: 7
Author(s): Synne Brune, Einar August Høgestøl, Vanja Cengija, Pål Berg‐Hansen, Piotr Sowa, Gro Owren Nygaard, Hanne F. Harbo, Mona K. Beyer
Software Mentions: 5
Published: over 5 years ago

10.3389/fnins.2020.620723

Spatiotemporal Processing of Bimodal Odor Lateralization in the Brain Using Electroencephalography Microstates and Source Localization
Cited by: 2
Author(s): Christine Ida Hucke, Rebekka Heinen, Marlene Pacharra, Edmund Wascher, Christoph van Thriel
Software Mentions: 5
Published: over 5 years ago

10.3389/fonc.2021.643503

Transcriptome Analyses Identify a Metabolic Gene Signature Indicative of Antitumor Immunosuppression of EGFR Wild Type Lung Cancers With Low PD-L1 Expression
Cited by: 1
Author(s): Min Wang, Jie Zhu, Fang Zhao, Jiani Xiao
Software Mentions: 5
Published: almost 5 years ago

10.1002/btm2.10198

Transcriptomic response of brain tissue to focused <scp>ultrasound‐mediated blood–brain</scp> barrier disruption depends strongly on anesthesia
Cited by: 12
Author(s): Alexander S. Mathew, Catherine M. Gorick, E. Andrew Thim, William J. Garrison, Alexander L. Klibanov, G. Wilson Miller, Natasha D. Sheybani, Richard J. Price
Software Mentions: 5
Published: over 5 years ago

10.3389/fonc.2021.637193

Oncogenic B-Myb Is Associated With Deregulation of the DREAM-Mediated Cell Cycle Gene Expression Program in High Grade Serous Ovarian Carcinoma Clinical Tumor Samples
Cited by: 5
Author(s): Audra N. Iness, Lisa Rubinsak, Steven J. Meas, Jessica Chaoul, Sadia Sayeed, Raghavendra Pillappa, Sarah M. Temkin, Mikhail G. Dozmorov, Larisa Litovchick
Software Mentions: 5
Published: over 5 years ago

10.3389/fpls.2020.01005

Similar Seed Composition Phenotypes Are Observed From CRISPR-Generated In-Frame and Knockout Alleles of a Soybean KASI Ortholog
Cited by: 8
Author(s): Kamaldeep S. Virdi, Madison Spencer, Adrian O. Stec, Yer Xiong, Ryan Merry, Gary J. Muehlbauer, Robert M. Stupar
Software Mentions: 5
Published: almost 6 years ago

10.3389/fpls.2020.00022

Plastome Evolution and Phylogeny of Orchidaceae, With 24 New Sequences
Cited by: 50
Author(s): Sang Hyun Kim, Sangjin Jo, Se Hwan Cheon, Min Jung Joo, Ja Ram Hong, Myounghai Kwak, Ki Joong Kim
Software Mentions: 5
Published: over 6 years ago

10.3389/fpls.2019.01411

Partitioning of Water Between Differently Sized Shrubs and Potential Groundwater Recharge in a Semiarid Savanna in Namibia
Cited by: 12
Author(s): Katja Geißler, Jessica Heblack, Shoopala Uugulu, Heike Wanke, Niels Blaum
Software Mentions: 5
Published: over 6 years ago

10.1080/21655979.2021.1878763

Long non-coding RNA-based signature for predicting prognosis of hepatocellular carcinoma
Cited by: 9
Author(s): Jie Cao, Lili Wu, Lei Xin, Ke–Qing Shi, Liang Shi, Yifen Shi
Software Mentions: 5
Published: over 5 years ago

10.3389/fpls.2021.733899

Discovery of the REN11 Locus From Vitis aestivalis for Stable Resistance to Grapevine Powdery Mildew in a Family Segregating for Several Unstable and Tissue-Specific Quantitative Resistance Loci
Cited by: 22
Author(s): Avinash Karn, Cheng Zou, Siraprapa Brooks, Jonathan Fresnedo-Ramírez, F. Mlikota Gabler, Qi Sun, David W. Ramming, Rachel P. Naegele, Craig A. Ledbetter, Lance Cadle‐Davidson
Software Mentions: 5
Published: almost 5 years ago

10.3389/fpls.2019.00849

Potential Elevation Shift of the European Beech Stands (Fagus sylvatica L.) in Serbia
Cited by: 11
Author(s): Lazar Pavlović, Dejan Stojanović, Emina Mladenović, Milena Lakićević, Saša Orlović
Software Mentions: 5
Published: almost 7 years ago

10.1007/s00248-019-01435-2

The Bacterial Flora Associated with the Polyphagous Aphid Aphis gossypii Glover (Hemiptera: Aphididae) Is Strongly Affected by Host Plants
Cited by: 26
Author(s): Shifen Xu, Li‐Yun Jiang, Ge‐Xia Qiao, Jing Chen
Software Mentions: 5
Published: over 6 years ago

10.1264/jsme2.ME17160

Chitin Increases Mycobacterium ulcerans Growth in Acidic Environments
Cited by: 6
Author(s): Daniel Sanhueza, Christine Chevillon, Nicolas Bouzinbi, Sylvain Godreuil, Jean‐François Guégan
Software Mentions: 5
Published: over 8 years ago

10.3389/fpsyg.2021.667173

Dimensions and Clusters of Aesthetic Emotions: A Semantic Profile Analysis
Cited by: 4
Author(s): Ursula Beermann, Georg Hosoya, Ines Schindler, Klaus R. Scherer, Michael Eid, Valentin Wagner, Winfried Menninghaus
Software Mentions: 5
Published: about 5 years ago

10.3389/fpsyg.2020.00178

Within-Family Environment and Cross-Fostering Stress Affect Behavior and Physiology in Wild Cavies (Cavia aperea)
Cited by: 0
Author(s): Sabine Kraus, Fritz Trillmich, Anja Guenther
Software Mentions: 5
Published: over 6 years ago

10.3389/fpsyg.2021.719596

‘I Get High With a Little Help From My Friends’ - How Raves Can Invoke Identity Fusion and Lasting Co-operation via Transformative Experiences
Cited by: 7
Author(s): Martha Newson, Ragini Khurana, Freya Cazorla, Valerie van Mulukom
Software Mentions: 5
Published: over 4 years ago

10.3390/vaccines9070694

Impact of Transcriptome and Gut Microbiome on the Response of HIV-1 Infected Individuals to a Dendritic Cell-Based HIV Therapeutic Vaccine
Cited by: 6
Author(s): Roque Pastor-Ibáñez, Francisco Díez-Fuertes, Sonsoles Sánchez-Palomino, José Alcamı́, Montserrat Plana, David Torrents, Lorna Leal, Felipe García
Software Mentions: 5
Published: about 5 years ago

10.3389/fpsyg.2019.02154

Sport and Exercise Psychology Studies in Brazil: Performance or Health?
Cited by: 4
Author(s): Lenamar Fiorese Vieira, André Luíz Félix Rodacki, Nayara Malheiros Caruzzo, Caio Rosas Moreira, Andressa Ribeiro Contreira, Aline Mendes de Lima, Leonardo de Sousa Fortes, João Ricardo Nickenig Vissoci, Joice Mara Facco Stefanello
Software Mentions: 5
Published: over 6 years ago

10.1177/0300985820985138

Stereology in Grading and Prognosis of Canine Cutaneous Mast Cell Tumors
Cited by: 0
Author(s): Mafalda Casanova, Sandra Branco, Inês Berenguer Veiga, André Barros, Pedro Faísca
Software Mentions: 5
Published: over 5 years ago

10.1186/s13073-018-0539-0

MutationalPatterns: comprehensive genome-wide analysis of mutational processes
Cited by: 459
Author(s): Francis Blokzijl, Roel Janssen, Ruben van Boxtel, Edwin Cuppen
Software Mentions: 5
Published: about 8 years ago

10.1186/s13073-020-00747-0

Strain-resolved microbiome sequencing reveals mobile elements that drive bacterial competition on a clinical timescale
Cited by: 37
Author(s): Soumaya Zlitni, Alex Bishara, Eli L. Moss, Е. И. Ткаченко, Joyce B. Kang, Rebecca Culver, Tessa M. Andermann, Ziming Weng, Christina M. Wood, Christine Handy, Hanlee P. Ji, Serafim Batzoglou, Ami S. Bhatt
Software Mentions: 5
Published: about 6 years ago

10.1186/s13073-020-00751-4

Multiple approaches for massively parallel sequencing of SARS-CoV-2 genomes directly from clinical samples
Cited by: 98
Author(s): Mao Xiao, Xiaoqing Liu, Jingkai Ji, Min Li, Jiandong Li, Lin Yang, Wanying Sun, Peng Ren, Guifang Yang, Jincun Zhao, Tianzhu Liang, Huahui Ren, Cheng Tian, Zhong Huang, Wenchen Song, Yanqun Wang, Ziqing Deng, Yongqiang Zhao, Zhihua Ou, Daxi Wang, Jielun Cai, Xinyi Cheng, Taiqing Feng, Honglong Wu, Yanping Gong, Huanming Yang, Jian Wang, Xun Xu, Shida Zhu, Fang Chen, Yanyan Zhang, Weijun Chen, Yimin Li, Junhua Li
Software Mentions: 5
Published: almost 6 years ago

10.1186/s13073-021-00876-0

In vivo genome editing in mouse restores dystrophin expression in Duchenne muscular dystrophy patient muscle fibers
Cited by: 9
Author(s): Menglong Chen, Hui Shi, Shixue Gou, Xiaomin Wang, Lei Li, Jin Qiu, Han Wu, Huili Zhang, Yaqin Li, Liang Wang, Huan Li, Jixian Lin, Wenjing Guo, Zhiwu Jiang, Xiaoyu Yang, Anding Xu, Yunping Zhu, Cheng Zhang, Liangxue Lai, Xiaoping Li
Software Mentions: 5
Published: about 5 years ago

10.1186/s13073-021-00879-x

Whole-genome sequencing of phenotypically distinct inflammatory breast cancers reveals similar genomic alterations to non-inflammatory breast cancers
Cited by: 7
Author(s): Xiaotong Li, Sushant Kumar, Arif Harmanci, Shantao Li, Robert Kitchen, Yan Zhang, Vikram B. Wali, Sangeetha M. Reddy, Wendy A. Woodward, James M. Reuben, Joel Rozowsky, Christos Hatzis, Naoto T. Ueno, Savitri Krishnamurthy, Lajos Pusztai, Mark Gerstein
Software Mentions: 5
Published: about 5 years ago

10.1186/s13073-021-00885-z

Cryopreservation of human cancers conserves tumour heterogeneity for single-cell multi-omics analysis
Cited by: 24
Author(s): Sunny Z. Wu, Daniel Roden, Ghamdan Al-Eryani, Nenad Bartoniček, Kate Harvey, Aurélie Cazet, Chia-Ling Chan, Simon Junankar, Mun Hui, Ewan A. Millar, Julia Beretov, Lisa Kristina Horvath, Anthony M. Joshua, Phillip D. Stricker, James S. Wilmott, Camelia Quek, Georgina V. Long, Richard A. Scolyer, Bertrand Z. Yeung, Davendra Segara, Cindy Mak, Sanjay Warrier, Joseph E. Powell, Sandra A. O’Toole, Elgene Lim, Alexander Swarbrick
Software Mentions: 5
Published: about 5 years ago

10.1093/gigascience/giw008

Morphometric analysis of Passiflora leaves: the relationship between landmarks of the vasculature and elliptical Fourier descriptors of the blade
Cited by: 43
Author(s): Daniel H. Chitwood, Wagner Campos Otoni
Software Mentions: 5
Published: over 9 years ago

10.1186/s13567-021-00925-x

Prediction of Johne’s disease state based on quantification of T cell markers and their interaction with macrophages in the bovine intestine
Cited by: 2
Author(s): Caitlin J. Jenvey, Adrienne L. Shircliff, Elsa Obando Marrero, Judith R. Stabel
Software Mentions: 5
Published: about 5 years ago

10.1093/gigascience/giy054

Benchmarking taxonomic assignments based on 16S rRNA gene profiling of the microbiota from commonly sampled environments
Cited by: 82
Author(s): Alexandre Almeida, Alex L. Mitchell, Aleksandra Tarkowska, Alex Bateman
Software Mentions: 5
Published: about 8 years ago

10.1093/gigascience/giaa088

A haplotype-resolved, de novo genome assembly for the wood tiger moth (Arctia plantaginis) through trio binning
Cited by: 16
Author(s): Eugenie C Yen, Shane McCarthy, Juan A. Galarza, Tomas N Generalovic, Sarah Pelan, Petr Nguyen, Joana I. Meier, Ian A. Warren, Johanna Mappes, Richard Durbin, Chris D. Jiggins
Software Mentions: 5
Published: almost 6 years ago

10.1093/gigascience/giaa125

Localized effect of treated wastewater effluent on the resistome of an urban watershed
Cited by: 17
Author(s): Christopher N Thornton, Windy Tanner, James VanDerslice, William J. Brazelton
Software Mentions: 5
Published: over 5 years ago

10.1093/gigascience/giab067

Association of female reproductive tract microbiota with egg production in layer chickens
Cited by: 5
Author(s): Yuan Su, Shilin Tian, Diyan Li, Wei Zhu, Tao Wang, Suchismita Mishra, Ranlei Wei, Zhongxian Xu, Mengnan He, Xiaoling Zhao, Huadong Yin, Xiaolan Fan, Bo Zeng, Mingyao Yang, Deying Yang, Qingyong Ni, Yan Li, Mingwang Zhang, Qing Zhu, Mingzhou Li
Software Mentions: 5
Published: almost 5 years ago

10.3390/bioengineering8060085

Supervised Analysis for Phenotype Identification: The Case of Heart Failure Ejection Fraction Class
Cited by: 2
Author(s): Cristina López, Jose Luis Holgado, Raquel Cortés, Inma Sauri, Antonio Fernandez, José Miguel Calderón, Julio Núñez, Josep Redón
Software Mentions: 5
Published: about 5 years ago

10.1080/19490976.2020.1785252

The gut microbiome stability is altered by probiotic ingestion and improved by the continuous supplementation of galactooligosaccharide
Cited by: 34
Author(s): Chenchen Ma, S. S. Wasti, Shi Huang, Zhen Zeng, Rajeev Mishra, Shuaiming Jiang, Zhengkai You, Yixuan Wu, Haibo Chang, Yuanyuan Wang, Dongxue Huo, Congfa Li, Zhihong Sun, Zheng Sun, Jiachao Zhang
Software Mentions: 5
Published: almost 6 years ago

10.1080/21642850.2018.1521283

Network analysis: a brief overview and tutorial
Cited by: 271
Author(s): David Hevey
Software Mentions: 5
Published: over 8 years ago

10.1093/bioinformatics/bty441

ggCyto: next generation open-source visualization software for cytometry
Cited by: 55
Author(s): Phu T. Van, Wenxin Jiang, Raphaël Gottardo, Greg Finak
Software Mentions: 5
Published: about 8 years ago

10.1016/j.heliyon.2020.e04354

The coverage of environmental issues in FM radios in Nepal: the current status and challenges
Cited by: 1
Author(s): Prakash Kumar Paudel, Rabin Bastola, Pashe Tamang Lopchan
Software Mentions: 5
Published: almost 6 years ago

10.1038/s41437-020-0331-y

Pathogen-associated selection on innate immunity genes (TLR4, TLR7) in a neotropical rodent in landscapes differing in anthropogenic disturbance
Cited by: 10
Author(s): Alexander Christoph Heni, Julian Schmid, Andrea Rasche, Victor M. Corman, Christian Drosten, Simone Sommer
Software Mentions: 5
Published: almost 6 years ago

10.1021/acs.jcim.0c01179

Conduction and Gating Properties of the TRAAK Channel from Molecular Dynamics Simulations with Different Force Fields
Cited by: 13
Author(s): Riccardo Ocello, Simone Furini, Francesca Lugli, Maurizio Recanatini, Carmen Domene, Matteo Masetti
Software Mentions: 5
Published: over 5 years ago

10.1021/acs.jcim.0c01382

Use of the Complementarity Principle in Docking Procedures: A New Approach for Evaluating the Correctness of Binding Poses
Cited by: 12
Author(s): Hrvoje Rimac, Maria Grishina, В. А. Потемкин
Software Mentions: 5
Published: about 5 years ago

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