cran: ggplot2 | Projects | Ecosyste.ms: Papers

10.1097/MD.0000000000016477

Comparative effectiveness of different forms of traditional Chinese medicine for treatment of post-stroke depression
Cited by: 4
Author(s): Huiling Chen, Meidan Zhao, Xiuming Li, Yanhong Zhang, Hui Yu, Ergang Xiao, Weizhen Gao, Hongwu Wang
Software Mentions: 5
Published: about 7 years ago

10.18632/aging.103497

Plasma sex hormone-binding globulin predicts neurodegeneration and clinical progression in prodromal Alzheimer's disease
Cited by: 9
Author(s): Wei Xu, Bing-Jie Su, Xue–Ning Shen, Yan‐Lin Bi, Cheng Tan, Jieqiong Li, Xi‐Peng Cao, Qiang Dong, Lan Tan, Alzheimer’s Disease Neuroimaging Initiative, Jin‐Tai Yu
Software Mentions: 5
Published: about 6 years ago

10.1038/s41598-021-92838-0

Light intensity and spectral composition drive reproductive success in the marine benthic diatom Seminavis robusta
Cited by: 4
Author(s): Gust Bilcke, Lore Van Craenenbroeck, Alexandre Castagna, Cristina Maria Osuna-Cruz, Klaas Vandepoele, Koen Sabbe, Lieven De Veylder, Wim Vyverman
Software Mentions: 5
Published: almost 5 years ago

10.1038/s41392-020-00221-8

An individualized immune signature of pretreatment biopsies predicts pathological complete response to neoadjuvant chemoradiotherapy and outcomes in patients with esophageal squamous cell carcinoma
Cited by: 17
Author(s): Chaoqi Zhang, Guochao Zhang, Nan Sun, Zhen Zhang, Liyan Xue, Zhihui Zhang, Haijun Yang, Yuejun Luo, Xiaoli Zheng, Yonglei Zhang, Yufen Yuan, Ruixue Lei, Zhaoyang Yang, Bo Zheng, Le Wang, Yun Cao, Feng Wang, Sihui Wang, Shugeng Gao, Qi Xue, Yi Zhang, Jie He
Software Mentions: 5
Published: almost 6 years ago

10.1038/s41598-021-96633-9

Spatio-seasonal variation of water quality influenced by land use and land cover in Lake Muhazi
Cited by: 15
Author(s): Edovia Dufatanye Umwali, Alishir Kurban, Alain Isabwe, Richard Mind’je, Hossein Azadi, Zengkun Guo, Madeleine Udahogora, Anathalie Nyirarwasa, Jeanine Umuhoza, Vincent Nzabarinda, Aboubakar Gasirabo, Gulnur Sabirhazi
Software Mentions: 5
Published: almost 5 years ago

10.1186/s12864-015-2096-x

The distribution and impact of common copy-number variation in the genome of the domesticated apple, Malus x domestica Borkh
Cited by: 19
Author(s): James Boocock, David Chagné, Tony R. Merriman, Michael A. Black
Software Mentions: 5
Published: almost 11 years ago

10.1038/s41598-021-97519-6

Landscape genetics and the genetic legacy of Upper Paleolithic and Mesolithic hunter-gatherers in the modern Caucasus
Cited by: 1
Author(s): Alexander Gavashelishvili, Alexey Yanchukov, David Tarkhnishvili, Marine Murtskhvaladze, Irakli Akhvlediani, Ceren Kazancı
Software Mentions: 5
Published: almost 5 years ago

10.1186/s13148-020-00829-1

Underestimated effect of intragenic HIV-1 DNA methylation on viral transcription in infected individuals
Cited by: 12
Author(s): Sam Kint, Wim Trypsteen, Ward De Spiegelaere, Eva Malatinková, Sabine Kinloch-de Loës, Tim De Meyer, Wim Van Criekinge, Linos Vandekerckhove
Software Mentions: 5
Published: over 6 years ago

10.1186/s13148-019-0772-4

Machine-learned analysis of global and glial/opioid intersection–related DNA methylation in patients with persistent pain after breast cancer surgery
Cited by: 10
Author(s): Dario Kringel, Mari A. Kaunisto, Eija Kalso, Jörn Lötsch
Software Mentions: 5
Published: almost 7 years ago

10.3389/fpls.2020.01140

Development of a Novel Phenotypic Roadmap to Improve Blueberry Quality and Storability
Cited by: 10
Author(s): Brian Farneti, F. Emanuelli, Iuliia Khomenko, M. Ajelli, Franco Biasioli, L. Giongo
Software Mentions: 5
Published: about 6 years ago

10.3389/fpls.2019.00156

Transcriptomics Identifies Modules of Differentially Expressed Genes and Novel Cyclotides in Viola pubescens
Cited by: 12
Author(s): Anne L. Sternberger, Megan J. Bowman, Colin Kruse, Kevin L. Childs, Harvey E. Ballard, Sarah E. Wyatt
Software Mentions: 5
Published: over 7 years ago

10.1007/s10126-021-10033-8

Genomic Characterization of the Barnacle Balanus improvisus Reveals Extreme Nucleotide Diversity in Coding Regions
Cited by: 5
Author(s): Magnus Alm Rosenblad, Anna Abramova, Ulrika Lind, Pall I. Olason, Stefania Giacomello, Björn Nystedt, Anders Blomberg
Software Mentions: 5
Published: over 5 years ago

10.1007/s00227-017-3279-6

Life-history responses to changing temperature and salinity of the Baltic Sea copepod Eurytemora affinis
Cited by: 22
Author(s): Konrad Karlsson, Simona Puiac, Monika Winder
Software Mentions: 5
Published: over 8 years ago

10.1007/s00227-018-3411-2

Interactive effects of herbivory and substrate orientation on algal community dynamics on a coral reef
Cited by: 19
Author(s): Alain Durán, Ligia Collado‐Vides, L. Palma, Deron E. Burkepile
Software Mentions: 5
Published: almost 8 years ago

10.1038/s41598-021-95360-5

Illumina iSeq 100 and MiSeq exhibit similar performance in freshwater fish environmental DNA metabarcoding
Cited by: 5
Author(s): Ryohei Nakao, Ryutei Inui, Yoshihisa Akamatsu, Masuji Goto, Hideyuki Doi, Shiro Matsuoka
Software Mentions: 5
Published: about 5 years ago

10.1186/s12936-019-2659-4

A fast and cost-effective microsampling protocol incorporating reduced animal usage for time-series transcriptomics in rodent malaria parasites
Cited by: 7
Author(s): Abhinay Ramaprasad, Amit Kumar Subudhi, Richard Culleton, Arnab Pain
Software Mentions: 5
Published: over 7 years ago

10.1186/1471-2164-14-853

Reprogramming of lysosomal gene expression by interleukin-4 and Stat6
Cited by: 18
Author(s): Louise M Brignull, Zsolt Czimmerer, Hafida Saidi, Bence Dániel, Izabel Vianna Villela, Nathan W. Bartlett, Sebastian L. Johnston, Lisiane B. Meira, László Nagy, Axel Nohturfft
Software Mentions: 5
Published: over 12 years ago

10.1186/s12936-020-03474-4

Measuring the contribution of human mobility to malaria persistence
Cited by: 8
Author(s): Maria Auxiliadora de Souza Mendes Gomes, Cláudia Torres Codeço, Leonardo Soares Bastos
Software Mentions: 5
Published: almost 6 years ago

10.1093/chemse/bjab003

Odor–Taste Interactions in Food Perception: Exposure Protocol Shows No Effects of Associative Learning
Cited by: 7
Author(s): Robin Fondberg, Johan N. Lundström, Janina Seubert
Software Mentions: 5
Published: over 5 years ago

10.1186/s12936-018-2612-y

Cryogenically preserved RBCs support gametocytogenesis of Plasmodium falciparum in vitro and gametogenesis in mosquitoes
Cited by: 9
Author(s): Ashutosh K. Pathak, Justine C. Shiau, Matthew B. Thomas, Courtney C. Murdock
Software Mentions: 5
Published: over 7 years ago

10.1186/s12936-021-03677-3

Fitness characteristics of the malaria vector Anopheles funestus during an attempted laboratory colonization
Cited by: 22
Author(s): Halfan S. Ngowo, Emmanuel E. Hape, Jason Matthiopoulos, Heather M. Ferguson, Fredros O. Okumu
Software Mentions: 5
Published: over 5 years ago

10.3758/s13414-020-02007-0

Oculomotor capture by search-irrelevant features in visual working memory: on the crucial role of target–distractor similarity
Cited by: 4
Author(s): Rebecca M. Foerster, Werner X. Schneider
Software Mentions: 5
Published: over 6 years ago

10.1186/s12936-019-2744-8

Effects of anthropogenic landscape changes on the abundance and acrodendrophily of Anopheles (Kerteszia) cruzii, the main vector of malaria parasites in the Atlantic Forest in Brazil
Cited by: 26
Author(s): Antônio Ralph Medeiros‐Sousa, Rafael de Oliveira Christe, Ana Maria Ribeiro de Castro Duarte, Luís Filipe Mucci, Walter Ceretti-Júnior, Mauro Toledo Marrelli
Software Mentions: 5
Published: over 7 years ago

10.1038/s41598-021-92826-4

Validating quantitative PCR assays for cfDNA detection without DNA extraction in exercising SLE patients
Cited by: 12
Author(s): Elmo Neuberger, Alexandra Brahmer, Tobias Ehlert, Katrin Kluge, Keito F A Philippi, Simone Boedecker, Julia Weinmann‐Menke, Perikles Simon
Software Mentions: 5
Published: about 5 years ago

10.1038/s41598-021-92206-y

Seroprevalence of SARS-CoV-2 antibodies in Saint Petersburg, Russia: a population-based study
Cited by: 15
Author(s): Антон Барчук, Dmitriy Skougarevskiy, Kirill Titaev, Daniil Shirokov, Yulia Raskina, Anastasia Novkunkskaya, Petr Talantov, А. А. Исаев, Ekaterina Pomerantseva, Svetlana Zhikrivetskaya, Lubov Barabanova, Vadim Volkov
Software Mentions: 5
Published: about 5 years ago

10.1038/s41598-021-95960-1

Modelling menstrual cycle length in athletes using state-space models
Cited by: 9
Author(s): Thiago de Paula Oliveira, Georgie Bruinvels, Charles R. Pedlar, Brian Moore, John Newell
Software Mentions: 5
Published: about 5 years ago

10.1186/s12864-019-5974-9

Comparison of gene expression profile of the spinal cord of sprouting-capable neonatal and sprouting-incapable adult mice
Cited by: 9
Author(s): Hiroshi Tsujioka, Toshio Yamashita
Software Mentions: 5
Published: about 7 years ago

10.3389/fpls.2020.00515

Temperature Variability at Local Scale in the Bordeaux Area. Relations With Environmental Factors and Impact on Vine Phenology
Cited by: 29
Author(s): Laure de Rességuier, Séverine Mary, Renan Le Roux, Théo Petitjean, Hervé Quénol, Cornelis van Leeuwen
Software Mentions: 5
Published: over 6 years ago

10.1038/s41598-021-93003-3

A pan-cancer transcriptomic study showing tumor specific alterations in central metabolism
Cited by: 10
Author(s): Ilir Sheraj, Tülïn Güray, Sreeparna Banerjee
Software Mentions: 5
Published: about 5 years ago

10.1186/s12944-021-01543-4

Determinants of the postprandial triglyceride response to a high-fat meal in healthy overweight and obese adults
Cited by: 4
Author(s): Stephanie Wilson, Adam P. Maes, Carl J. Yeoman, Seth T. Walk, Mary P. Miles
Software Mentions: 5
Published: almost 5 years ago

10.1002/lno.10967

Fewer blue lakes and more murky lakes across the continental U.S.: Implications for planktonic food webs
Cited by: 64
Author(s): Dina M. Leech, Amina I. Pollard, Stephanie Labou, Stephanie E. Hampton
Software Mentions: 5
Published: about 8 years ago

10.3389/fpls.2021.621561

Transcriptome Analysis Reveals Photoperiod-Associated Genes Expressed in Rice Anthers
Cited by: 14
Author(s): Shiyu Sun, Duoxiang Wang, Jingbin Li, Yaqi Lei, Gang Li, Wenguo Cai, Xiangxiang Zhao, Wanqi Liang, Dabing Zhang
Software Mentions: 5
Published: over 5 years ago

10.1038/s41598-021-91425-7

Establishment and assessment of an amplicon sequencing method targeting the 16S-ITS-23S rRNA operon for analysis of the equine gut microbiome
Cited by: 17
Author(s): Yuta Kinoshita, Hidekazu Niwa, Eri Uchida‐Fujii, Toshio Nukada
Software Mentions: 5
Published: about 5 years ago

10.1038/s41598-021-90489-9

Auxiliary rapid identification of pathogenic and antagonistic microorganisms associated with Coptis chinensis root rot by high-throughput sequencing
Cited by: 7
Author(s): Hailang Liao, Ling Huang, Na Li, Wenjia Ke, Yiqing Xiang, Yuntong Ma
Software Mentions: 5
Published: over 5 years ago

10.26508/lsa.202101036

Hepatitis B virus compartmentalization and single-cell differentiation in hepatocellular carcinoma
Cited by: 2
Author(s): Frank Jühling, Antonio Saviano, Clara Ponsolles, Laura Heydmann, Émilie Crouchet, Sarah Durand, Houssein El Saghire, Emanuele Felli, Véronique Lindner, Patrick Pessaux, Nathalie Pochet, Catherine Schuster, Éloi R. Verrier, Thomas F. Baumert
Software Mentions: 5
Published: about 5 years ago

10.18632/aging.202739

Oral administration of Akkermansia muciniphila elevates systemic antiaging and anticancer metabolites
Cited by: 67
Author(s): Claudia Grajeda‐Iglesias, Sylvère Durand, Romain Daillère, Kristina Iribarren, Fabien Lemaître, Lisa Derosa, Fanny Aprahamian, Noélie Bossut, Nitharsshini Nirmalathasan, Frank Madeo, Laurence Zitvogel, Guido Kroemer
Software Mentions: 5
Published: over 5 years ago

10.3389/fphys.2017.00661

The Gly16 Allele of the G16R Single Nucleotide Polymorphism in the β2-Adrenergic Receptor Gene Augments the Glycemic Response to Adrenaline in Humans
Cited by: 6
Author(s): Kim Zillo Rokamp, Jonatan Myrup Staalsø, Morten Zaar, P Rasmussen, Lonnie G. Petersen, Rikke Vibeke Nielsen, Niels H. Secher, Niels Vidiendal Olsen, Henning Bay Nielsen
Software Mentions: 5
Published: almost 9 years ago

10.3389/fmicb.2020.02023

Microbial Communities of the Shallow-Water Hydrothermal Vent Near Naples, Italy, and Chemosynthetic Symbionts Associated With a Free-Living Marine Nematode
Cited by: 12
Author(s): Laure Bellec, Marie-Anne Cambon-Bonavita, Lucile Durand, Johanne Aubé, Nicolas Gayet, Roberto Sandulli, Christophe Brandily, Daniela Zeppilli
Software Mentions: 5
Published: about 6 years ago

10.1038/s41598-021-90380-7

Gut microbiota composition in health-care facility-and community-onset diarrheic patients with Clostridioides difficile infection
Cited by: 6
Author(s): Giovanny Herrera, Laura Vega, Manuel A. Patarroyo, Juan David Ramírez, Marina Muñoz
Software Mentions: 5
Published: over 5 years ago

10.1038/s41598-021-89148-w

Dilute pilocarpine test for diagnosis of Adie’s tonic pupil
Cited by: 3
Author(s): Yung Ju Yoo, Jeong Min Hwang, Hee Kyung Yang
Software Mentions: 5
Published: over 5 years ago

10.7717/peerj.12067

The spleen bacteriome of wild rodents and shrews from Marigat, Baringo County, Kenya
Cited by: 2
Author(s): Rehema Liyai, Kimita Gathii, Clement Masakhwe, David Abuom, Beth Mutai, David Miruka Onyango, John N. Waitumbi
Software Mentions: 5
Published: almost 5 years ago

10.1186/s13075-015-0544-2

Transcriptome analysis of ageing in uninjured human Achilles tendon
Cited by: 61
Author(s): Mandy J. Peffers, Yongxiang Fang, Kathleen Cheung, Tim Koh Jia Wei, Peter Clegg, Helen L. Birch
Software Mentions: 5
Published: over 11 years ago

10.3390/cells10040876

Stability of Imprinting and Differentiation Capacity in Naïve Human Cells Induced by Chemical Inhibition of CDK8 and CDK19
Cited by: 0
Author(s): Raquel Bernad, Cian J. Lynch, Rocío G. Urdinguio, Camille Stephan‐Otto Attolini, Mario F. Fraga, Manuel Serrano
Software Mentions: 5
Published: over 5 years ago

10.1016/j.lmot.2018.07.003

A re-examination of responding on ratio and regulated-probability interval schedules
Cited by: 6
Author(s): Omar David Pérez, Michael R. F. Aitken, Amy Milton, Anthony Dickinson
Software Mentions: 5
Published: almost 8 years ago

10.18632/aging.203081

Pan-cancer analysis of the prognostic value of C12orf75 based on data mining
Cited by: 3
Author(s): Guangzhen Cai, Guan-Nan Jin, Jintai Liang, Ganxun Li, Xiaoping Chen, Huifang Liang, Zhao Ding
Software Mentions: 5
Published: about 5 years ago

10.1038/s41598-021-90641-5

Bioelectrical impedance analysis versus quantitative computer tomography and anthropometry for the assessment of body composition parameters in China
Cited by: 6
Author(s): Qian Qin, Yang Yang, Jingfeng Chen, Yaojun Jiang, Ang Li, Meng Huang, Yihan Dong, Shoujun Wang, Shuzhe Ding
Software Mentions: 5
Published: over 5 years ago

10.1038/s41598-021-81538-4

Clinical implications of intrinsic molecular subtypes of breast cancer for sentinel node status
Cited by: 12
Author(s): Maria Rossing, Christina Bligaard Pedersen, Tove Filtenborg Tvedskov, Ilse Vejborg, Maj Lis Møller Talman, Lars Rønn Olsen, Niels Kroman, Finn Cilius Nielsen, Maj Britt Jensen, Bent Ejlertsen
Software Mentions: 5
Published: over 5 years ago

10.1038/s41598-021-80990-6

Metagenomics analysis of bacteriophages and antimicrobial resistance from global urban sewage
Cited by: 24
Author(s): Josephine E. S. Strange, Pimlapas Leekitcharoenphon, Frederik Duus Møller, Frank Møller Aarestrup
Software Mentions: 5
Published: over 5 years ago

10.1038/s41598-021-81332-2

Low serum total CO2 and its association with mortality in patients being followed up in the nephrology outpatients clinic
Cited by: 0
Author(s): Kyung Don Yoo, Jung Nam An, Yong Chul Kim, Jeonghwan Lee, Kwon Wook Joo, Yun Kyu Oh, Yon Su Kim, Chun Soo Lim, Sohee Oh, Jung Pyo Lee
Software Mentions: 5
Published: over 5 years ago

10.3390/cells10030693

Voluntary Wheel Running Did Not Alter Gene Expression in 5xfad Mice, but in Wild-Type Animals Exclusively after One-Day of Physical Activity
Cited by: 2
Author(s): Anna Wierczeiko, Lena Gammel, Konstantin Radyushkin, Vu Thu Thuy Nguyen, Hristo Todorov, Susanne Gerber, Kristina Endres
Software Mentions: 5
Published: over 5 years ago

10.3389/fphys.2019.01305

The Regulation of Ruminal Short-Chain Fatty Acids on the Functions of Rumen Barriers
Cited by: 28
Author(s): Hong Shen, Zhihui Xu, Zanming Shen, Zhongyan Lu
Software Mentions: 5
Published: almost 7 years ago

10.1002/cam4.3959

IBSP, a potential recurrence biomarker, promotes the progression of colorectal cancer via Fyn/β‐catenin signaling pathway
Cited by: 8
Author(s): Cheng Yan, Ying Qin, Mengmeng Dai, Liping Liu, Yicheng Ni, Qiao Sun, Lulu Li, Yaoyao Zhou, Cheng Qiu, Yuyang Jiang
Software Mentions: 5
Published: over 5 years ago

10.1002/cam4.2312

Characterization of transcriptome profile and clinical features of a novel immunotherapy target CD204 in diffuse glioma
Cited by: 19
Author(s): Yanggang Yuan, Qitai Zhao, Songfeng Zhao, Penghua Zhang, Haibiao Zhao, Zeyun Li, Yue Du, Xin Tian, Jingli Lü
Software Mentions: 5
Published: over 7 years ago

10.1038/s41598-020-80151-1

Dispersal and competitive release affect the management of native and invasive tephritid fruit flies in large and smallholder farms in Ethiopia
Cited by: 3
Author(s): Tibebe Dejene Biasazin, Tadiwos W. Wondimu, Sebastian Larsson Herrera, Mattias C. Larsson, Agenor Mafra‐Neto, Yitbarek W. Gessese, Teun Dekker
Software Mentions: 5
Published: over 5 years ago

10.1007/s00401-021-02299-y

Single-cell profiling of myasthenia gravis identifies a pathogenic T cell signature
Cited by: 21
Author(s): Florian Ingelfinger, Sinduya Krishnarajah, Michael H. Kramer, Sebastian G. Utz, Edoardo Galli, Mirjam Lutz, Pascale Zwicky, Ayse U. Akarca, Nicole Puertas Jurado, Can Ulutekin, David Bamert, Corinne C. Widmer, Luca Piccoli, Federica Sallusto, Nicolás Gonzalo Núñez, Teresa Marafioti, Didier Schneiter, Isabelle Opitz, Antonio Lanzavecchia, Hans H. Jung, Donatella De Feo, Sarah Mundt, Bettina Schreiner, Burkhard Becher
Software Mentions: 5
Published: over 5 years ago

10.3389/fphar.2018.00084

Proteomic Analysis of Combined Gemcitabine and Birinapant in Pancreatic Cancer Cells
Cited by: 15
Author(s): Xu Zhu, Xiaomeng Shen, Jun Qu, Robert M. Straubinger, William J. Jusko
Software Mentions: 5
Published: over 8 years ago

10.1002/cam4.3481

Integrated genomic analysis identifies a genetic mutation model predicting response to immune checkpoint inhibitors in melanoma
Cited by: 22
Author(s): Junjie Jiang, Yongfeng Ding, Mengjie Wu, Yanyan Chen, Xiadong Lyu, Jun Lü, Haiyong Wang, Lisong Teng
Software Mentions: 5
Published: almost 6 years ago

10.3390/cells9122599

LKB1 Differently Regulates Adipogenesis in Intramuscular and Subcutaneous Adipocytes through Metabolic and Cytokine-Related Signaling Pathways
Cited by: 5
Author(s): Zhonglin Xu, Yanbing Zhou, Qiuyun Nong, Wenjing You, Liyi Wang, Yizhen Wang, Tizhong Shan
Software Mentions: 5
Published: over 5 years ago

10.7717/peerj.11433

Analysis of multi-omics differences in left-side and right-side colon cancer
Cited by: 7
Author(s): Yanyi Huang, Jinzhong Duanmu, Yushu Liu, Mengyun Yan, Taiyuan Li, Qunguang Jiang
Software Mentions: 5
Published: over 5 years ago

10.1186/s12864-019-6314-9

Mating precedes selective immune priming which is maintained throughout bumblebee queen diapause
Cited by: 32
Author(s): Thomas J. Colgan, Sive Finlay, Mark J. F. Brown, James C. Carolan
Software Mentions: 5
Published: over 6 years ago

10.1186/s12864-020-07027-6

Reconstruction of ancient homeobox gene linkages inferred from a new high-quality assembly of the Hong Kong oyster (Magallana hongkongensis) genome
Cited by: 21
Author(s): Yiqian Li, Wenyan Nong, Tobias Baril, Ho Yin Yip, Thomas Swale, Alexander Hayward, David Ferrier, Jerome H. L. Hui
Software Mentions: 5
Published: almost 6 years ago

10.1371/journal.pone.0252508

Network pharmacology and molecular docking study on the mechanism of colorectal cancer treatment using Xiao-Chai-Hu-Tang
Cited by: 23
Author(s): Jingyun Jin, Bin Chen, Xiangyang Zhan, Zhiyi Zhou, Hui Liu, Yun Dong
Software Mentions: 5
Published: about 5 years ago

10.3389/fphar.2018.00305

Frequency of CYP2D6 Alleles Including Structural Variants in the United States
Cited by: 81
Author(s): Andria L. Del Tredici, Alka Malhotra, Matthew Dedek, Frank G. Espin, Daniel E. Roach, Guang dan Zhu, Joseph R. Voland, Tanya A. Moreno
Software Mentions: 5
Published: over 8 years ago

10.1186/s12864-019-6240-x

Didelphis albiventris: an overview of unprecedented transcriptome sequencing of the white-eared opossum
Cited by: 0
Author(s): Íria Gabriela Dias dos Santos, Tiago Antônio de Oliveira Mendes, Gerluza Aparecida Borges Silva, Amanda Maria Sena Reis, Cláudia Barros Monteiro-Vitorello, Patrícia Dayane Carvalho Schaker, Roberto Hirochi Herai, André Brait Carneiro Fabotti, Luiz Lehmann Coutinho, Érika Cristina Jorge
Software Mentions: 5
Published: almost 7 years ago

10.1007/s13280-020-01360-6

Living with floating vegetation invasions
Cited by: 19
Author(s): Fritz Kleinschroth, R. Scott Winton, Elisa Calamita, Fabian Niggemann, Martina Botter, Bernhard Wehrli, Jaboury Ghazoul
Software Mentions: 5
Published: about 6 years ago

10.3389/fped.2020.00052

A Multidisciplinary Intervention in Childhood Obesity Acutely Improves Insulin Resistance and Inflammatory Markers Independent From Body Composition
Cited by: 7
Author(s): Ernst Mayerhofer, Franz Ratzinger, Nina Elvira Kienreich, Annika Stiel, Nadine Witzeneder, Eva Schrefl, Georg Greiner, Christoph Wegscheider, Irene Graf, Klaus G. Schmetterer, Rodrig Marculescu, Thomas Szekeres, Thomas Perkmann, Martina Fondi, Oswald Wagner, Harald Esterbauer, Matthias Mayerhofer, Stefana Holocher-Ertl, Claudia Wojnarowski, Gregor Hoermann
Software Mentions: 5
Published: over 6 years ago

10.1186/s12864-017-3543-7

The nucleotide composition of microbial genomes indicates differential patterns of selection on core and accessory genomes
Cited by: 56
Author(s): Jon Bohlin, Vegard Eldholm, John H.‐O. Pettersson, Ola Brønstad Brynildsrud, Lars-Gustav Snipen
Software Mentions: 5
Published: over 9 years ago

10.3389/fped.2021.709765

Delivery Modality Affect Neonatal Levels of Inflammation, Stress, and Growth Factors
Cited by: 2
Author(s): Pia Kiilerich, Rikke Cortes, Ulrik Lausten-Thomsen, Nis Borbye‐Lorenzen, Solveig Holmgaard, Kristin Skogstrand
Software Mentions: 5
Published: almost 5 years ago

10.3389/fphar.2020.592116

Pros and Cons of Aspirin for the Primary Prevention of Cardiovascular Events: A Secondary Study of Trial Sequential Analysis
Cited by: 8
Author(s): Binghao Zhao, Qian Wu, Li Wang, Chen Di Liao, Dong Yan, Jianpeng Xu, Yiping Wei
Software Mentions: 5
Published: over 5 years ago

10.1002/cam4.1802

Marital status and survival in patients with soft tissue sarcoma: A population‐based, propensity‐matched study
Cited by: 21
Author(s): Shilong Zhang, Wen-Rong Wang, Ze‐juan Liu, Zhiming Wang
Software Mentions: 5
Published: over 7 years ago

10.1371/journal.pone.0255241

Detecting joint attention events in mother-infant dyads: Sharing looks cannot be reliably identified by naïve third-party observers
Cited by: 2
Author(s): Kirsty E. Graham, Joanna C. Buryn-Weitzel, Nicole J Lahiff, Claudia Wilke, Katie E. Slocombe
Software Mentions: 5
Published: about 5 years ago

10.1371/journal.pone.0175330

Genomic analyses of the ancestral Manila family of Mycobacterium tuberculosis
Cited by: 8
Author(s): Xuehua Wan, Kent J. Koster, Lishi Qian, Edward Desmond, Richard Brostrom, Shaobin Hou, James T. Douglas
Software Mentions: 5
Published: over 9 years ago

10.1371/journal.pone.0227028

Spatial ecology of coyotes in the urbanizing landscape of the Cuyahoga Valley, Ohio
Cited by: 4
Author(s): Gregory A. Franckowiak, Marlo Perdicas, Gregory A. Smith
Software Mentions: 5
Published: over 6 years ago

10.1186/s12864-018-4541-0

Genetic mapping and comparative genomics to inform restoration enhancement and culture of southern flounder, Paralichthys lethostigma
Cited by: 8
Author(s): Shannon J. O’Leary, Christopher M. Hollenbeck, Robert R. Vega, John R. Gold, David S. Portnoy
Software Mentions: 5
Published: over 8 years ago

10.1038/s41598-020-77289-3

Evaluation of the upper airway microbiome and immune response with nasal epithelial lining fluid absorption and nasal washes
Cited by: 4
Author(s): Meghan H. Shilts, Christian Rosas‐Salazar, Christian Edward Cyril Lynch, Andrey Tovchigrechko, Helen H. Boone, Patty Russell, Alexandra Connolly, Kaitlin Costello, Megan D McCollum, Annie Mai, Derek Wiggins, Seesandra V. Rajagopala, Shibu Yooseph, R. Stokes Peebles, Tina V. Hartert, Suman Das
Software Mentions: 5
Published: almost 6 years ago

10.1371/journal.pone.0206791

Palaeohistology and life history evolution in cave bears, Ursus spelaeus sensu lato
Cited by: 9
Author(s): Kristof Veitschegger, Christian Kolb, Eli Amson, Torsten M. Scheyer, Marcelo R. Sánchez‐Villagra
Software Mentions: 5
Published: almost 8 years ago

10.3389/fonc.2020.01088

MMP25 Regulates Immune Infiltration Level and Survival Outcome in Head and Neck Cancer Patients
Cited by: 8
Author(s): Yujie Liang, Chenyu Guan, Kan Li, Guanghui Zheng, Tao Wang, Sien Zhang, Guiqing Liao
Software Mentions: 5
Published: about 6 years ago

10.1038/s41598-020-76978-3

Bio-fertilizer and rotten straw amendments alter the rhizosphere bacterial community and increase oat productivity in a saline–alkaline environment
Cited by: 20
Author(s): Peina Lu, Luke D. Bainard, Bin Ma, Jinghui Liu
Software Mentions: 5
Published: almost 6 years ago

10.1038/s41598-020-76769-w

GIANT: galaxy-based tool for interactive analysis of transcriptomic data
Cited by: 8
Author(s): Jimmy Vandel, Céline Gheeraert, Bart Staels, Jérôme Eeckhoute, Philippe Lefèbvre, Julie Dubois-Chevalier
Software Mentions: 5
Published: almost 6 years ago

10.1186/s12935-020-01243-6

Identification of a competing endogenous RNA network associated with prognosis of pancreatic adenocarcinoma
Cited by: 24
Author(s): Wanqing Weng, Zhongjing Zhang, Weiguo Huang, Xiangxiang Xu, Boda Wu, Tingbo Ye, Yunfeng Shan, Ke–Qing Shi, Zhuo Lin
Software Mentions: 5
Published: about 6 years ago

10.1128/AEM.02012-16

Long-Term Warming Alters Carbohydrate Degradation Potential in Temperate Forest Soils
Cited by: 58
Author(s): Grace Pold, Andrew F. Billings, Jeffrey L. Blanchard, Daniel Burkhardt, Serita D. Frey, Jerry M. Melillo, Julia Schnabel, Linda T. A. van Diepen, Kristen M. DeAngelis
Software Mentions: 5
Published: almost 10 years ago

10.1371/journal.pone.0167375

Mangrove Crab Ucides cordatus Removal Does Not Affect Sediment Parameters and Stipule Production in a One Year Experiment in Northern Brazil
Cited by: 12
Author(s): Nathalie Pülmanns, Ulf Mehlig, Inga Nordhaus, Ulrich Saint-Paul, Karen Diele
Software Mentions: 5
Published: over 9 years ago

10.3390/cells9061534

Transcriptomic microRNA Profiling of Dendritic Cells in Response to Gut Microbiota-Secreted Vesicles
Cited by: 13
Author(s): Natalia Díaz-Garrido, Sarah Bonnin, Marta Riera, Rosa Gíménez, Josefa Badı́a, Laura Baldomà
Software Mentions: 5
Published: about 6 years ago

10.1038/s41598-020-74602-y

A trophic latitudinal gradient revealed in anchovy and sardine from the Western Mediterranean Sea using a multi-proxy approach
Cited by: 21
Author(s): Eneko Bachiller, Marta Albo-Puigserver, Joan Giménez, María Grazia Pennino, Neus Marí‐Mena, Antonio Esteban, Elena Lloret-Lloret, Angélique Jadaud, Belén Carro, José María Bellido, Marta Coll
Software Mentions: 5
Published: almost 6 years ago

10.3389/fonc.2021.637911

Phenotypic Plasticity Conferred by the Metastatic Microenvironment of the Brain Strengthens the Intracranial Tumorigenicity of Lung Tumor Cells
Cited by: 0
Author(s): Xin Wei, Kewei Bi, Bo Li
Software Mentions: 5
Published: over 5 years ago

10.1016/j.stem.2020.09.001

Loss of Extreme Long-Range Enhancers in Human Neural Crest Drives a Craniofacial Disorder
Cited by: 86
Author(s): Hannah K. Long, Marco Osterwalder, Ian Welsh, Karissa Hansen, James O. J. Davies, Yiran E. Liu, Mervenaz Koska, Alexander T. Adams, Robert Aho, Neiha Arora, Kazuya Ikeda, Ruth M. Williams, Tatjana Sauka‐Spengler, Matthew H. Porteus, Tim Mohun, Diane E. Dickel, Tomek Swigut, Jim R. Hughes, Douglas R. Higgs, Axel Visel, Licia Selleri, Joanna Wysocka
Software Mentions: 5
Published: almost 6 years ago

10.1016/j.tcsw.2020.100039

A seven-membered cell wall related transglycosylase gene family in Aspergillus niger is relevant for cell wall integrity in cell wall mutants with reduced α-glucan or galactomannan
Cited by: 13
Author(s): Tim M. van Leeuwe, Jasper Wattjes, Anna Niehues, Gabriel Forn-Cuní, Nicholas Geoffrion, Hugo Mélida, Mark Arentshorst, Antonio Molina, Adrian Tsang, Annemarie H. Meijer, Bruno M. Moerschbacher, Peter J. Punt, Arthur F. J. Ram
Software Mentions: 5
Published: over 5 years ago

10.1093/bioinformatics/btx364

UpSetR: an R package for the visualization of intersecting sets and their properties
Cited by: 1,808
Author(s): Jake R. Conway, Alexander Lex, Nils Gehlenborg
Software Mentions: 5
Published: about 9 years ago

10.3389/fonc.2021.686044

A Novel Prognostic Model Based on Ferroptosis-Related Gene Signature for Bladder Cancer
Cited by: 27
Author(s): Libo Yang, Chunyan Li, Yang Qin, Guoying Zhang, Bin Zhao, Ziyuan Wang, Yang H. Huang, Yong Yang
Software Mentions: 5
Published: about 5 years ago

10.1186/s12935-021-01823-0

A signature of seven immune‐related genes predicts overall survival in male gastric cancer patients
Cited by: 10
Author(s): Xin Xu, Yida Lu, Youliang Wu, Mingliang Wang, Xiaodong Wang, Huizhen Wang, Bo Chen, Yongxiang Li
Software Mentions: 5
Published: over 5 years ago

10.3389/fpls.2019.00511

Activity in the Arbuscular Mycorrhizal Hyphosphere Warning Neighbouring Plants
Cited by: 8
Author(s): Carmina Cabral, Bernd Wollenweber, Carla António, Sabine Ravnskov
Software Mentions: 5
Published: over 7 years ago

10.3389/fonc.2020.605097

An Integrative Pan-Cancer Analysis Revealing LCN2 as an Oncogenic Immune Protein in Tumor Microenvironment
Cited by: 33
Author(s): Wen‐Xiu Xu, Jian Zhang, Yu-Ting Hua, Su-Jin Yang, Dandan Wang, Jinhai Tang
Software Mentions: 5
Published: over 5 years ago

10.3390/cells9091937

Arabidopsis thaliana cbp80, c2h2, and flk Knockout Mutants Accumulate Increased Amounts of Circular RNAs
Cited by: 7
Author(s): Anna Philips, Katarzyna Nowis, Michał Stelmaszczuk, Jan Podkowiński, Luiza Handschuh, Paulina Jackowiak, Marek Figlerowicz
Software Mentions: 5
Published: about 6 years ago

10.1186/s12864-021-07849-y

Genome-wide identification and characterization of caffeoyl-coenzyme A O-methyltransferase genes related to the Fusarium head blight response in wheat
Cited by: 7
Author(s): Guang Yang, Wenqiu Pan, Ruoyu Zhang, Yan Pan, Qifan Guo, Weining Song, Wenbin Zheng, Xiaojun Nie
Software Mentions: 5
Published: about 5 years ago

10.1038/s41598-020-80829-6

Empirical evidence for concerted evolution in the 18S rDNA region of the planktonic diatom genus Chaetoceros
Cited by: 5
Author(s): Danièle De Luca, Wiebe H. C. F. Kooistra, Diana Sarno, Elio Biffali, Roberta Piredda
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0109229

Imitation, Genetic Lineages, and Time Influenced the Morphological Evolution of the Violin
Cited by: 28
Author(s): Daniel H. Chitwood
Software Mentions: 5
Published: almost 12 years ago

10.3390/plants9070886

Gigaspora margarita and Its Endobacterium Modulate Symbiotic Marker Genes in Tomato Roots under Combined Water and Nutrient Stress
Cited by: 4
Author(s): Matteo Chialva, Luisa Lanfranco, Gianluca Guazzotti, Veronica Santoro, Mara Novero, Paola Bonfante
Software Mentions: 5
Published: about 6 years ago

10.1016/j.celrep.2018.04.047

Influenza Virus Mounts a Two-Pronged Attack on Host RNA Polymerase II Transcription
Cited by: 68
Author(s): David L.V. Bauer, Michael Tellier, Maira Martínez-Alonso, Takayuki Nojima, Nick J. Proudfoot, Shona Murphy, Ervin Fodor
Software Mentions: 5
Published: over 8 years ago

10.1186/s12864-017-4100-0

Comparative transcriptomics of female and male gametocytes in Plasmodium berghei and the evolution of sex in alveolates
Cited by: 61
Author(s): Lee M. Yeoh, Christopher D. Goodman, Vanessa Mollard, Geoffrey I. McFadden, Stuart A. Ralph
Software Mentions: 5
Published: almost 9 years ago

10.3389/fonc.2021.626187

Dysregulation of Transcription Factor Networks Unveils Different Pathways in Human Papillomavirus 16-Positive Squamous Cell Carcinoma and Adenocarcinoma of the Uterine Cervix
Cited by: 9
Author(s): Saloê Bispo, Ticiana Della Justina Farias, Patrícia Savio de Araujo-Souza, Ricardo Cintra, Hellen Geremias dos Santos, Natasha Andressa Nogueira Jorge, Mauro A. A. Castro, Gabriel Wajnberg, Nicole de Miranda Scherer, Maria Luiza Nogueira Dias Genta, Jesus Paula Carvalho, Luísa Lina Villa, Laura Sichero, Fábio Passetti
Software Mentions: 5
Published: over 5 years ago

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