cran: ggplot2 | Projects | Ecosyste.ms: Papers

10.1038/s41598-017-12122-y

The ClpXP protease is dispensable for degradation of unfolded proteins in Staphylococcus aureus
Cited by: 42
Author(s): Steen G. Stahlhut, Abdulelah A. Alqarzaee, Camilla Jensen, Niclas S. Fisker, Andreia Pereira, Mariana G. Pinho, Vinai Chittezham Thomas, Dorte Frees
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0218943

Stable isotope and dental caries data reveal abrupt changes in subsistence economy in ancient China in response to global climate change
Cited by: 27
Author(s): Christina Cheung, Hua Zhang, Joseph C. Hepburn, Dongya Yang, Michael P. Richards
Software Mentions: 1
Published: over 6 years ago

10.7717/peerj.8269

Identification of miRNA precursors in the phloem of Cucurbita maxima
Cited by: 7
Author(s): Eugeny A. Tolstyko, Alexander A. Lezzhov, Andrey G. Solovyev
Software Mentions: 1
Published: about 6 years ago

10.7717/peerj.10338

A molecular survey based on eDNA to assess the presence of a clown featherback (Chitala ornata) in a confined environment
Cited by: 7
Author(s): Maslin Osathanunkul, Toshifumi Minamoto
Software Mentions: 1
Published: about 5 years ago

10.3389/fmicb.2017.01726

In Silico Screening of the Human Gut Metaproteome Identifies Th17-Promoting Peptides Encrypted in Proteins of Commensal Bacteria
Cited by: 18
Author(s): Claudio Hidalgo-Cantabrana, Marco Antonio Moro-García, Aitor Blanco-Míguez, Florentino Fdez-Riverola, Anália Lourenço, Rebeca Alonso-Arias, Borja Sánchez
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0188824

Technological variability in the Late Palaeolithic lithic industries of the Egyptian Nile Valley: The case of the Silsilian and Afian industries
Cited by: 5
Author(s): Alice Leplongeon
Software Mentions: 1
Published: about 8 years ago

10.3390/brainsci11060704

The Association between Difficulties with Speech Fluency and Language Skills in a National Age Cohort of Children with Down Syndrome
Cited by: 3
Author(s): K Naess, Egil Nygaard, Hilde Hofslundsengen, J. Scott Yaruss
Software Mentions: 1
Published: over 4 years ago

10.1098/rsos.150677

Predicting plant attractiveness to pollinators with passive crowdsourcing
Cited by: 18
Author(s): Christie A. Bahlai, Douglas A. Landis
Software Mentions: 1
Published: over 9 years ago

10.1098/rsos.150358

Differential responses of coral larvae to the colour of ambient light guide them to suitable settlement microhabitat
Cited by: 42
Author(s): Marie E. Strader, Sarah W. Davies, Mikhail V. Matz
Software Mentions: 1
Published: over 10 years ago

10.1039/d0ra03872e

Sequential sequestrations increase the incorporation and retention of multiple growth factors in mineralized collagen scaffolds
Cited by: 10
Author(s): Aleczandria S. Tiffany, Maynard M. Dewey, Brendan A.C. Harley
Software Mentions: 1
Published: about 6 years ago

10.1016/j.molcel.2018.05.033

mRNA Deadenylation Is Coupled to Translation Rates by the Differential Activities of Ccr4-Not Nucleases
Cited by: 176
Author(s): M. Webster, Ying Hsin Chen, James A.W. Stowell, Najwa Alhusaini, Thomas J. Sweet, Brenton R. Graveley, Jeff Coller, Lori A. Passmore
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-020-64367-9

Dynamics of apomictic and sexual reproduction during primary succession on a glacier forefield in the Swiss Alps
Cited by: 7
Author(s): Christian Sailer, Jürg Stöcklin, Ueli Grossniklaus
Software Mentions: 1
Published: over 5 years ago

10.7717/peerj.2844

Determining virus-host interactions and glycerol metabolism profiles in geographically diverse solar salterns with metagenomics
Cited by: 4
Author(s): Abraham G Moller, Chun Liang
Software Mentions: 1
Published: about 9 years ago

10.1007/s11682-016-9626-2

Associations between genetic risk, functional brain network organization and neuroticism
Cited by: 15
Author(s): Michelle N. Servaas, Linda Geerligs, Jojanneke A. Bastiaansen, Remco Renken, Jan-Bernard C Marsman, Ilja M. Nolte, Johan Ormel, André Alemán, Harriëtte Riese
Software Mentions: 1
Published: over 9 years ago

10.1017/S0950268819000724

Epidemiologic patterns of humanSalmonellaserotype diversity in the USA, 1996–2016
Cited by: 11
Author(s): Michael C. Judd, Robert M. Hoekstra, Barbara E. Mahon, Patricia I. Fields, Karen K. Wong
Software Mentions: 1
Published: about 7 years ago

10.1017/S1368980017003275

Meeting UK dietary recommendations is associated with higher estimated consumer food costs: an analysis using the National Diet and Nutrition Survey and consumer expenditure data, 2008–2012
Cited by: 39
Author(s): Nicholas Jones, Tammy Y.N. Tong, Pablo Monsivais
Software Mentions: 1
Published: about 8 years ago

10.1093/braincomms/fcaa068

Progressive dysexecutive syndrome due to Alzheimer’s disease: a description of 55 cases and comparison to other phenotypes
Cited by: 68
Author(s): Ryan A. Townley, Jonathan Graff‐Radford, William G. Mantyh, Hugo Botha, Angelina J. Polsinelli, Scott A. Przybelski, Mary M. Machulda, Ahmed T Makhlouf, Matthew L. Senjem, Melissa E. Murray, R. Ross Reichard, Rodolfo Savica, Bradley F. Boeve, Daniel A. Drubach, Keith A. Josephs, David S. Knopman, Val J. Lowe, Clifford R. Jack, Ronald C. Petersen, David T. Jones
Software Mentions: 1
Published: about 6 years ago

10.1007/s00213-018-4969-6

Validation and optimisation of a touchscreen progressive ratio test of motivation in male rats
Cited by: 17
Author(s): Jonathan M. Hailwood, Christopher Heath, Trevor W. Robbins, Lisa M. Saksida, Timothy J. Bussey
Software Mentions: 1
Published: over 7 years ago

10.1016/j.psyneuen.2018.02.031

Prevalence and correlates of low-grade systemic inflammation in adult psychiatric inpatients: An electronic health record-based study
Cited by: 75
Author(s): Emanuele F. Osimo, Rudolf N. Cardinal, Peter B. Jones, Golam M. Khandaker
Software Mentions: 1
Published: almost 8 years ago

10.1093/braincomms/fcab098

Updating beliefs beyond the here-and-now: the counter-factual self in anosognosia for hemiplegia
Cited by: 10
Author(s): Louise P. Kirsch, Christoph Mathys, Christina Papadaki, Penelope Talelli, Karl J. Friston, Valentina Moro, Aikaterini Fotopoulou
Software Mentions: 1
Published: almost 5 years ago

10.3758/s13423-018-1553-3

Do confidence ratings prime confidence?
Cited by: 9
Author(s): Kit S. Double, Damian P. Birney
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-020-65824-1

Motor axonopathies in a mouse model of Duchenne muscular dystrophy
Cited by: 6
Author(s): Justin Dhindsa, Angela L McCall, Laura M Strickland, Anna Fusco, Amanda F Kahn, Mai K. ElMallah
Software Mentions: 1
Published: over 5 years ago

10.1016/j.bbih.2021.100318

Microbially-derived short-chain fatty acids impact astrocyte gene expression in a sex-specific manner
Cited by: 20
Author(s): Simon Spichak, Francisco Donoso, Gerard M. Moloney, Eoin Gunnigle, Jillian R. Brown, Martín Gabriel Codagnone, Timothy G. Dinan, John F. Cryan
Software Mentions: 1
Published: over 4 years ago

10.1017/S0033291719000357

Potential influence of socioeconomic status on genetic correlations between alcohol consumption measures and mental health
Cited by: 42
Author(s): Andries T. Marees, Dirk J.A. Smit, Jue‐Sheng Ong, Stuart MacGregor, Jiyuan An, Damiaan Denys, Florence Vorspan, Wim van den Brink, Eske M. Derks
Software Mentions: 1
Published: almost 7 years ago

10.1017/S0033291717000836

Adolescent friendships predict later resilient functioning across psychosocial domains in a healthy community cohort
Cited by: 147
Author(s): A.-L. van Harmelen, Rogier A. Kievit, Konstantinos Ioannidis, Sharon Neufeld, Peter Jones, Edward T. Bullmore, Raymond J. Dolan, Peter Fonagy, Ian Goodyer
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-020-65692-9

Remote ischemic conditioning in active ulcerative colitis: An explorative randomized clinical trial
Cited by: 3
Author(s): Line E. Godskesen, Thomas Ravn Lassen, Nichlas Riise Jespersen, Majken Siersbæk, Yan Yan, Michael Milek Nielsen, Sara K. Tjønnfjord, Lars Grøntved, Gunvor Iben Madsen, Jørgen Kjems, Hans Erik Bøtker, Michael Schmidt, Aleksander Krag, Jens Kjeldsen
Software Mentions: 1
Published: over 5 years ago

10.1016/j.bbi.2020.09.011

Inflammatory and cardiometabolic markers at presentation with first episode psychosis and long-term clinical outcomes: A longitudinal study using electronic health records
Cited by: 11
Author(s): Emanuele F. Osimo, Benjamin Ian Perry, Rudolf N. Cardinal, Mary-Ellen Lynall, Jonathan Lewis, Arti Kudchadkar, Graham K. Murray, Jesús Pérez, Peter B. Jones, Golam M. Khandaker
Software Mentions: 1
Published: about 5 years ago

10.1016/j.pscychresns.2019.111019

Alcohol consumption is associated with reduced creatine levels in the hippocampus of older adults
Cited by: 4
Author(s): Naiara Demnitz, Anya Topiwala, Enikő Zsoldos, Charlotte J. Stagg, Uzay E. Emir, Heidi Johansen‐Berg, Klaus P. Ebmeier, Claire E. Sexton
Software Mentions: 1
Published: about 6 years ago

10.1186/s12937-015-0119-8

Body adiposity index performance in estimating body fat in a sample of severely obese Brazilian patients
Cited by: 16
Author(s): G. Belarmino, L.M. Horie, Priscila Sala, Raquel Susana Torrinhas, Steven B. Heymsfield, Dan Linetzky Waitzberg
Software Mentions: 1
Published: about 10 years ago

10.3389/fmicb.2019.00611

Signal Disruption Leads to Changes in Bacterial Community Population
Cited by: 20
Author(s): Michael Schwab, Céline Bergonzi, Jonathan K. Sakkos, Christopher Staley, Qian Zhang, Michael J. Sadowsky, Mikael Elias
Software Mentions: 1
Published: almost 7 years ago

10.7717/peerj.8266

Organ health and development in larval kingfish are unaffected by ocean acidification and warming
Cited by: 6
Author(s): Andrea Frommel, Colin J. Brauner, Bridie J. M. Allan, Simon Nicol, Darren M. Parsons, Steve Pether, Alvin N. Setiawan, Neville Smith, Philip L. Munday
Software Mentions: 1
Published: about 6 years ago

10.1186/s12943-021-01308-8

The inflammatory kinase IKKα phosphorylates and stabilizes c-Myc and enhances its activity
Cited by: 19
Author(s): Bernhard Moser, Bernhard Hochreiter, José Basílio, Viola Gleitsmann, Anja Panhuber, Alan Pardo-Garcia, Bastian Hoesel, Manuel Salzmann, Ulrike Resch, Mamoona Noreen, Johannes A. Schmid
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0195433

Effects of different slipping methods on the mortality of sardine, Sardina pilchardus, after purse-seine capture off the Portuguese Southern coast (Algarve)
Cited by: 16
Author(s): Ana Marçalo, Pedro M. Guerreiro, Luís Bentes, Mafalda Rangel, Pedro Monteiro, Frederico Oliveira, Carlos M.L. Afonso, Pedro Pousão-Ferreira, Hugues P. Benoît, Mike Breen, Karim Erzini, Jorge M. S. Gonçalves
Software Mentions: 1
Published: over 7 years ago

10.3390/proteomes7020016

The Proteome of Tetrasphaera elongata is adapted to Changing Conditions in Wastewater Treatment Plants
Cited by: 16
Author(s): Florian‐Alexander Herbst, Morten Simonsen Dueholm, Reinhard Wimmer, Per Halkjær Nielsen
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0149035

Heterologous Expression Screens in Nicotiana benthamiana Identify a Candidate Effector of the Wheat Yellow Rust Pathogen that Associates with Processing Bodies
Cited by: 63
Author(s): Benjamin Pêtre, Diane G. O. Saunders, Jan Sklenář, Cécile Lorrain, Ksenia V. Krasileva, Joe Win, Sébastien Duplessis, Sophien Kamoun
Software Mentions: 1
Published: about 10 years ago

10.3390/ijms21238950

Exploring the Interaction between the SWI/SNF Chromatin Remodeling Complex and the Zinc Finger Factor CTCF
Cited by: 11
Author(s): Mariangela Valletta, Rosita Russo, Ilaria Baglivo, Veronica Russo, Sara Ragucci, Annamaria Sandomenico, Emanuela Iaccarino, Menotti Ruvo, Italia De Feis, Claudia Angelini, Sara Iachettini, Annamaria Biroccio, Paolo V. Pedone, Angela Chambery
Software Mentions: 1
Published: about 5 years ago

10.3390/proteomes6040045

A Comparative Quantitative LC-MS/MS Profiling Analysis of Human Pancreatic Adenocarcinoma, Adjacent-Normal Tissue, and Patient-Derived Tumour Xenografts
Cited by: 20
Author(s): Orla Coleman, Michael Henry, Fiona O’Neill, Sandra Roche, Niall Swan, Lorraine Boyle, J. J. Murphy, Justine Meiller, Neil T. Conlon, Justin Geoghegan, Kevin C. Conlon, Vincent J. Lynch, Ninfa L. Straubinger, Robert M. Straubinger, G. McVey, M. Moriarty, Martin Clynes
Software Mentions: 1
Published: over 7 years ago

10.1161/CIRCINTERVENTIONS.115.002988

Quantification of the Effect of Pressure Wire Drift on the Diagnostic Performance of Fractional Flow Reserve, Instantaneous Wave-Free Ratio, and Whole-Cycle Pd/Pa
Cited by: 42
Author(s): Christopher Cook, Yousif Ahmad, Matthew Shun-Shin, Sukhjinder Nijjer, Ricardo Petraco, Rasha Al‐Lamee, Jamil Mayet, Dárrel P. Francis, Sayan Sen, Justin E. Davies
Software Mentions: 1
Published: almost 10 years ago

10.1186/s12943-020-01160-2

CircMRPS35 suppresses gastric cancer progression via recruiting KAT7 to govern histone modification
Cited by: 102
Author(s): Meng-Meng Jie, Yaran Wu, Mengyuan Gao, Xinzhe Li, Cheng Liu, Qin Ouyang, Qingyun Tang, Changyu Shan, Yang‐Fan Lv, Kebin Zhang, Qian Dai, Yang Chen, Shuo Zeng, Chenglin Li, Liting Wang, Fengtian He, C. Hu, Shi–Ming Yang
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-021-82472-1

Neuroendocrine prostate cancer has distinctive, non-prostatic HOX code that is represented by the loss of HOXB13 expression
Cited by: 9
Author(s): Siyuan Cheng, Shu Yang, Yunfan Shi, Runhua Shi, Yunshin Yeh, Xiuping Yu
Software Mentions: 1
Published: about 5 years ago

10.1186/s12953-021-00170-2

ITRAQ-based quantitative proteomic analysis of Fusarium moniliforme (Fusarium verticillioides) in response to Phloridzin inducers
Cited by: 4
Author(s): Rong Zhang, Weitao Jiang, Xin Liu, Yanan Duan, Xiang Li, Yanfang Wang, Yuanmao Jiang, Xiang Shen, Xuesen Chen, Chengmiao Yin, Zhiquan Mao
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-021-82295-0

Lsr2, a nucleoid-associated protein influencing mycobacterial cell cycle
Cited by: 14
Author(s): Marta Kołodziej, Damian Trojanowski, Katarzyna Bury, Joanna Hołówka, Weronika Matysik, Hanna Kąkolewska, Helge Feddersen, Giacomo Giacomelli, Igor Konieczny, Marc Bramkamp, Jolanta Zakrzewska‐Czerwińska
Software Mentions: 1
Published: about 5 years ago

10.1186/s13148-021-01075-9

Epigenome-wide association study of level and change in cognitive abilities from midlife through late life
Cited by: 0
Author(s): Ida Karlsson, Malin Ericsson, Yunzhang Wang, Juulia Jylhävä, Sara Hägg, Anna K. Dahl Aslan, Chandra A. Reynolds, Nancy L. Pedersen
Software Mentions: 1
Published: almost 5 years ago

10.3390/ijms22052246

Potential Neuroprotective Mechanisms of Methamphetamine Treatment in Traumatic Brain Injury Defined by Large-Scale IonStar-Based Quantitative Proteomics
Cited by: 3
Author(s): Shichen Shen, Ming Zhang, Min Ma, Sailee Rasam, David J. Poulsen, Jun Qu
Software Mentions: 1
Published: almost 5 years ago

10.1002/pro.3558

Evolutionary divergence of the nuclear pore complex from fungi to metazoans
Cited by: 8
Author(s): Kriti Chopra, Shrankhla Bawaria, Radha Chauhan
Software Mentions: 1
Published: about 7 years ago

10.1523/ENEURO.0009-19.2019

Critical Analysis of Particle Detection Artifacts in Synaptosome Flow Cytometry
Cited by: 13
Author(s): Benjamin D. Hobson, Peter A. Sims
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0208548

Genomic characterization of the Braque Français type Pyrénées dog and relationship with other breeds
Cited by: 8
Author(s): Salvatore Mastrangelo, Filippo Biscarini, Marco Tolone, Barbara Auzino, Marco Ragatzu, Andrea Spaterna, Roberta Ciampolini
Software Mentions: 1
Published: about 7 years ago

10.1073/pnas.2101498118

Elucidation of an anaerobic pathway for metabolism of <scp>l</scp> -carnitine–derived γ-butyrobetaine to trimethylamine in human gut bacteria
Cited by: 28
Author(s): Lauren J. Rajakovich, Beverly Fu, Maud Bollenbach, Emily P. Balskus
Software Mentions: 1
Published: over 4 years ago

10.1073/pnas.2021166117

Identification of signaling pathways, matrix-digestion enzymes, and motility components controlling Vibrio cholerae biofilm dispersal
Cited by: 24
Author(s): Andrew A. Bridges, Chenyi Fei, Bonnie L. Bassler
Software Mentions: 1
Published: about 5 years ago

10.1073/pnas.2004911117

Demographic science aids in understanding the spread and fatality rates of COVID-19
Cited by: 680
Author(s): Jennifer Beam Dowd, Liliana Andriano, David M. Brazel, Valentina Rotondi, Per Block, Xuejie Ding, Yan Liu, Melinda Mills
Software Mentions: 1
Published: almost 6 years ago

10.1161/CIRCGENETICS.115.001302

Metabolic Characterization of a Rare Genetic Variation Within APOC3 and Its Lipoprotein Lipase–Independent Effects
Cited by: 27
Author(s): Fotios Drenos, George Davey Smith, Mika Ala‐Korpela, Johannes Kettunen, Peter Würtz, Pasi Soininen, Antti J. Kangas, Caroline Dale, Debbie A. Lawlor, Tom R. Gaunt, Juan-Pablo Casas, Nicholas J. Timpson
Software Mentions: 1
Published: over 9 years ago

10.1186/s13041-017-0312-0

Optimizing reproducibility of operant testing through reinforcer standardization: identification of key nutritional constituents determining reward strength in touchscreens
Cited by: 21
Author(s): Eun Woo Kim, Benjamin U. Phillips, Christopher Heath, So Yeon Cho, Hyun-Jeong Kim, Jemeen Sreedharan, Ho Taek Song, Jong Eun Lee, Timothy J. Bussey, Chul Hoon Kim, Eosu Kim, Lisa M. Saksida
Software Mentions: 1
Published: over 8 years ago

10.3390/nu13082522

A Novel Sprouted Oat Fermented Beverage: Evaluation of Safety and Health Benefits for Celiac Individuals
Cited by: 5
Author(s): Natalia Aparicio-García, Cristina Martínez‐Villaluenga, Juana Frı́as, Laura Crespo Perez, Cristina Fernández, Claudio Alba, Juan M. Rodríguez, Elena Peñas
Software Mentions: 1
Published: over 4 years ago

10.3389/fmicb.2020.608856

Comparative Decomposition of Humans and Pigs: Soil Biogeochemistry, Microbial Activity and Metabolomic Profiles
Cited by: 8
Author(s): Jennifer M. DeBruyn, Katharina M. Hoeland, Lois S. Taylor, Jessica D. Stevens, Michelle A. Moats, Sreejata Bandopadhyay, Stephen P. Dearth, Hector F. Castro, Kaitlin K. Hewitt, Shawn R. Campagna, Angela Dautartas, Giovanna M. Vidoli, Amy Z. Mundorff, Dawnie Wolfe Steadman
Software Mentions: 1
Published: about 5 years ago

10.3389/fmicb.2016.01185

The First Temporal and Spatial Assessment of Vibrio Diversity of the Surrounding Seawater of Coral Reefs in Ishigaki, Japan
Cited by: 26
Author(s): Arshia Amin, Feng Gao, Nurhidayu Al‐saari, Pedro Milet Meirelles, Yasushi Yamazaki, Sayaka Mino, Fabiano L. Thompson, Toko Sawabe, Tomoo Sawabe
Software Mentions: 1
Published: over 9 years ago

10.1073/pnas.1901556116

Contrasting evolution of virulence and replication rate in an emerging bacterial pathogen
Cited by: 21
Author(s): Luc Tardy, Mathieu Giraudeau, Geoffrey E. Hill, Kevin J. McGraw, Camille Bonneaud
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0099899

A Method for Detecting Long Non-Coding RNAs with Tiled RNA Expression Microarrays
Cited by: 12
Author(s): Sigrún H. Lund, Daníel F. Guðbjartsson, Thorunn Rafnar, Ásgeir Sigurðsson, Sigurjon A. Gudjonsson, Jūlı́us Guðmundsson, Kári Stefánsson, Gunnar Stefánsson
Software Mentions: 1
Published: over 11 years ago

10.1186/s13020-021-00488-1

Herbal formula Huangqi Guizhi Wuwu decoction attenuates paclitaxel-related neurotoxicity via inhibition of inflammation and oxidative stress
Cited by: 11
Author(s): Zhangming Lv, Jiayun Shen, Xuejiao Gao, Yonglan Ruan, Jinying Ling, Rongwei Sun, Jingya Dai, Haizhen Fan, Xiaolan Cheng, Peng Cao
Software Mentions: 1
Published: over 4 years ago

10.1017/S0950268818003552

Does scientific effort reflect global need? A review of infectious disease publications over 100 years
Cited by: 1
Author(s): David T. S. Hayman, Michael G Baker
Software Mentions: 1
Published: about 7 years ago

10.1186/s40880-017-0225-4

Exploring the potential confounder of nitrogen fertilizers in the relationship between pesticide exposures and risk of leukemia: a Poisson regression with two-way fixed-effects analysis
Cited by: 2
Author(s): Keith Fluegge, Keith Fluegge
Software Mentions: 1
Published: over 8 years ago

10.1039/c4mb00290c

Proteome-wide analysis of human disease mutations in short linear motifs: neglected players in cancer?
Cited by: 75
Author(s): Bora Uyar, Robert J. Weatheritt, Holger Dinkel, Norman E. Davey, Toby J. Gibson
Software Mentions: 1
Published: about 12 years ago

10.3390/e23050626

Impact of Coronavirus Outbreaks on Science and Society: Insights from Temporal Bibliometry of SARS and COVID-19
Cited by: 2
Author(s): Ramya Gupta, Abhishek N. Prasad, Suresh Babu, Gitanjali Yadav
Software Mentions: 1
Published: over 4 years ago

10.3389/fmicb.2020.01615

Origin and Evolution of H1N1/pdm2009: A Codon Usage Perspective
Cited by: 7
Author(s): Fucheng Guo, Jian Yang, Junbin Pan, Xianghui Liang, Xuejuan Shen, David M. Irwin, Ruiai Chen, Yongyi Shen
Software Mentions: 1
Published: over 5 years ago

10.1093/molbev/msaa104

Evolution of Human Brain Size-Associated NOTCH2NL Genes Proceeds toward Reduced Protein Levels
Cited by: 8
Author(s): Gerrald A. Lodewijk, Diana Pereira Fernandes, Iraklis Vretzakis, Jeanne E. Savage, Frank M. J. Jacobs
Software Mentions: 1
Published: almost 6 years ago

10.1098/rspb.2021.0900

The three Ts of virulence evolution during zoonotic emergence
Cited by: 14
Author(s): Elisa Visher, Claire Evensen, Sarah Guth, Edith Lai, Marina Norfolk, Carly Rozins, Nina A. Sokolov, Melissa Sui, Michael Boots
Software Mentions: 1
Published: over 4 years ago

10.1093/molbev/msz249

HLA Heterozygote Advantage against HIV-1 Is Driven by Quantitative and Qualitative Differences in HLA Allele-Specific Peptide Presentation
Cited by: 51
Author(s): Jatin Arora, Federica Pierini, Paul J. McLaren, Mary Carrington, Jacques Fellay, Tobias Lenz
Software Mentions: 1
Published: over 6 years ago

10.3390/children8080675

Under-Vaccination in Pediatric Liver Transplant Candidates with Acute and Chronic Liver Disease—A Retrospective Observational Study of the European Reference Network TransplantChild
Cited by: 5
Author(s): Tobias Laue, Zeynep Demir, Dominique Debray, Mara Cananzi, Paola Gaio, Valeria Casotti, Lorenzo D’Antiga, Vaidotas Urbonas, Ulrich Baumann
Software Mentions: 1
Published: over 4 years ago

10.7717/peerj.6809

Identification of a putative competitive endogenous RNA network for lung adenocarcinoma using TCGA datasets
Cited by: 14
Author(s): Yuanyong Wang, Tong Lu, Yang Wo, Xiao Sun, Shicheng Li, Shuncheng Miao, Yanting Dong, Xiaoliang Leng, Wenjie Jiao
Software Mentions: 1
Published: almost 7 years ago

10.1016/j.chest.2020.10.077

The Value of Hemodynamic Measurements or Cardiac MRI in the Follow-up of Patients With Idiopathic Pulmonary Arterial Hypertension
Cited by: 16
Author(s): Cathelijne E. van der Bruggen, M. Louis Handoko, Harm Jan Bogaard, Johannes Timotheus Marcus, Franciscus Petrus Theodorus Oosterveer, Lilian J. Meijboom, Berend E. Westerhof, Anton Vonk‐Noordegraaf, Frances S. de Man
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-021-83823-8

High diversity, inbreeding and a dynamic Pleistocene demographic history revealed by African buffalo genomes
Cited by: 8
Author(s): Deon de Jager, Brigitte Glanzmann, Marlo Möller, Eileen G. Hoal, Paul van Helden, Cindy Kim Harper, Paulette Bloomer
Software Mentions: 1
Published: almost 5 years ago

10.3389/fmicb.2020.00376

Hiding in Plain Sight: The Globally Distributed Bacterial Candidate Phylum PAUC34f
Cited by: 3
Author(s): Michael L. Chen, Eric D. Becraft, Maria Pachiadaki, Julia Brown, Jessica K. Jarett, Josep M. Gasol, Nikolai V. Ravin, Duane P. Moser, Takuro Nunoura, Gerhard J. Herndl, Tanja Woyke, Ramunas Stepanauskas
Software Mentions: 1
Published: almost 6 years ago

10.3389/fmicb.2021.683266

RNA-Based Analysis Reveals High Diversity of Plant-Associated Active Fungi in the Atmosphere
Cited by: 1
Author(s): Yan Chen, Xishen Zhu, Ziqiong Hou, Yi Wang, Zhou Yang, Ling Wang, Lin Liu, Jingrong Duan, Sauban Musa Jibril, Chengyun Li
Software Mentions: 1
Published: over 4 years ago

10.7717/peerj.7451

Profiling the lncRNA-miRNA-mRNA ceRNA network to reveal potential crosstalk between inflammatory bowel disease and colorectal cancer
Cited by: 28
Author(s): Fangfang Sun, Weiwei Liang, Kejun Tang, Mengying Hong, Jing Qian
Software Mentions: 1
Published: over 6 years ago

10.1098/rspb.2018.2025

The history, genome and biology of NCTC 30: a non-pandemic Vibrio cholerae isolate from World War One
Cited by: 14
Author(s): Matthew J. Dorman, Leanne Kane, Daryl Domman, Jake D. Turnbull, Claire Cormie, Mohammed-Abbas Fazal, David Goulding, Julie E. Russell, Sarah Alexander, Nicholas R. Thomson
Software Mentions: 1
Published: almost 7 years ago

10.3389/fgene.2019.01065

Genome-Wide Analysis of Genetic Diversity in Plasmodium falciparum Isolates From China–Myanmar Border
Cited by: 15
Author(s): Run Ye, Yini Tian, Yufu Huang, Yilong Zhang, Jian Wang, Xin Sun, Hongning Zhou, Dongmei Zhang, Weiqing Pan
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-021-84914-2

Long-term monitoring of SARS-CoV-2 RNA in wastewater of the Frankfurt metropolitan area in Southern Germany
Cited by: 92
Author(s): Shelesh Agrawal, Laura Orschler, Susanne Lackner
Software Mentions: 1
Published: almost 5 years ago

10.1098/rspb.2016.1742

Enhanced macroboring and depressed calcification drive net dissolution at high-CO 2 coral reefs
Cited by: 56
Author(s): Ian C. Enochs, Derek P. Manzello, Graham Kolodziej, Sam H. C. Noonan, Lauren Valentino, Katharina Fabricius
Software Mentions: 1
Published: about 9 years ago

10.1523/ENEURO.0300-19.2019

Characterization of Auditory and Binaural Spatial Hearing in a Fragile X Syndrome Mouse Model
Cited by: 11
Author(s): Elizabeth A. McCullagh, Shani Poleg, Nathaniel T. Greene, Molly M. Huntsman, Daniel J. Tollin, Achim Klug
Software Mentions: 1
Published: about 6 years ago

10.1186/s13148-020-00869-7

CTCF loss mediates unique DNA hypermethylation landscapes in human cancers
Cited by: 26
Author(s): Nathan Damaschke, Joseph Gawdzik, Mele Avilla, Bing Yang, John Svaren, Avtar Roopra, Jianhua Luo, Yan Yu, Sündüz Keleş, David F. Jarrard
Software Mentions: 1
Published: over 5 years ago

10.1186/s12963-016-0117-x

Using multi-year national survey cohorts for period estimates: an application of weighted discrete Poisson regression for assessing annual national mortality in US adults with and without diabetes, 2000–2006
Cited by: 7
Author(s): Yiling J. Cheng, Edward W. Gregg, Deborah B. Rolka, Theodore Thompson
Software Mentions: 1
Published: about 9 years ago

10.7717/peerj.6195

Hardly habitual: chimpanzees and gorillas show flexibility in their motor responses when presented with a causally-clear task
Cited by: 7
Author(s): Sarah L. Jacobson, Lydia M. Hopper
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-021-84911-5

ABA signalling and metabolism are not essential for dark-induced stomatal closure but affect response speed
Cited by: 11
Author(s): Ashley J. Pridgeon, Alistair M. Hetherington
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.pone.0248124

Kinesthetic engagement in Gestalt evaluation outscores analytical ‘atomic feature’ evaluation in perceiving aging in crystallization images of agricultural products
Cited by: 2
Author(s): Paul Doesburg, Jürgen Fritz, Miriam Athmann, Roya Bornhütter, Nicolaas Busscher, Uwe Geier, Gaby Mergardt, Claudia Scherr
Software Mentions: 1
Published: almost 5 years ago

10.3390/nu11020337

Autism Spectrum Disorder (ASD) with and without Mental Regression is Associated with Changes in the Fecal Microbiota
Cited by: 61
Author(s): Julio Plaza‐Díaz, Antonio Gómez-Fernández, Natalia Chueca, María José de la Torre-Aguilar, Ángel Gil, Juan Luis Pérez‐Navero, Katherine Flores-Rojas, Pilar Martín-Borreguero, Patricio Solís-Urra, Francisco Javier Ruiz‐Ojeda, Féderico García, Mercedes Gil-Campos
Software Mentions: 1
Published: about 7 years ago

10.1523/ENEURO.0024-16.2016

Transcriptional Profiling of Newly Generated Dentate Granule Cells Using TU Tagging Reveals Pattern Shifts in Gene Expression during Circuit Integration
Cited by: 20
Author(s): Christina Chatzi, Yingyu Zhang, Rongkun Shen, Gary L. Westbrook, Richard H. Goodman
Software Mentions: 1
Published: about 10 years ago

10.1111/evj.12766

Quantification of the effect of instrumentation error in objective gait assessment in the horse on hindlimb symmetry parameters
Cited by: 14
Author(s): F. M. Serra Bragança, Marie Rhodin, Thomas Wiestner, Elin Hernlund, Thilo Pfau, P. R. van Weeren, Michael A Weishaupt
Software Mentions: 1
Published: over 8 years ago

10.7717/peerj.12052

A new threat to local marine biodiversity: filamentous mats proliferating at mesophotic depths off Rapa Nui
Cited by: 4
Author(s): Javier Sellanes, Matthias Gorny, German Zapata‐Hernández, Gonzalo Álvarez, Práxedes Muñoz, Fadia Tala
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-021-85367-3

Vaginal microbiome and serum metabolite differences in late gestation commercial sows at risk for pelvic organ prolapse
Cited by: 9
Author(s): Zoë E Kiefer, Lucas R Koester, Lucas Showman, Jamie M Studer, Amanda Chipman, Aileen F. Keating, Stephan Schmitz‐Esser, Jason W. Ross
Software Mentions: 1
Published: almost 5 years ago

10.1002/cre2.233

Neutral zone recording in computer‐guided implant prosthesis: A new digital neuromuscular approach
Cited by: 4
Author(s): Massimo Frascaria, Davide Pietropaoli, Matteo Casinelli, R Cattaneo, Eleonora Ortu, Annalisa Monaco
Software Mentions: 1
Published: over 6 years ago

10.1523/ENEURO.0076-20.2020

diceCT: A Valuable Technique to Study the Nervous System of Fish
Cited by: 13
Author(s): Victoria Camilieri-Asch, Jeremy Shaw, Andrew Mehnert, Kara E. Yopak, Julian C. Partridge, Shaun P. Collin
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0249739

The effects of maturity matched and un-matched opposition on physical performance and spatial exploration behavior during youth basketball matches
Cited by: 7
Author(s): Jorge Arede, Sean P. Cumming, David M. Johnson, Nuno Leite
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-021-84827-0

A multi-scale pipeline linking drug transcriptomics with pharmacokinetics predicts in vivo interactions of tuberculosis drugs
Cited by: 11
Author(s): Joseph M. Cicchese, Awanti Sambarey, Denise E. Kirschner, Jennifer J. Linderman, Sriram Chandrasekaran
Software Mentions: 1
Published: almost 5 years ago

10.1002/jbm4.10531

<scp>CRISPR‐Cas9</scp> –Mediated Genome Editing Confirms <scp> EPDR1 </scp> as an Effector Gene at the <scp>BMD GWAS</scp> ‐Implicated ‘ <scp> STARD3NL </scp> ’ Locus
Cited by: 2
Author(s): James A. Pippin, Alessandra Chesi, Yadav Wagley, Chun Su, Matthew C Pahl, Kenyaita M. Hodge, Matthew E. Johnson, Andrew D. Wells, Kurt D. Hankenson, Struan F.A. Grant
Software Mentions: 1
Published: over 4 years ago

10.1038/s41416-019-0565-8

Combined poly-ADP ribose polymerase and ataxia-telangiectasia mutated/Rad3-related inhibition targets ataxia-telangiectasia mutated-deficient lung cancer cells
Cited by: 33
Author(s): Nicholas Jette, Suraj Radhamani, Greydon Arthur, Ruiqiong Ye, Siddhartha Goutam, Anthony Bolyos, L. Petersen, Pinaki Bose, D. Gwyn Bebb, Susan P. Lees‐Miller
Software Mentions: 1
Published: over 6 years ago

10.1001/jamapsychiatry.2021.0380

Association of Age, Antipsychotic Medication, and Symptom Severity in Schizophrenia With Proton Magnetic Resonance Spectroscopy Brain Glutamate Level
Cited by: 60
Author(s): Kate Merritt, Philip McGuire, Alice Egerton, H-Mrs in Schizophrenia Investigators, André Alemán, Wolfgang Block, Oswald Bloemen, Faith Borgan, Juan Bustillo, Arístides A. Capizzano, Jennifer M. Coughlin, Camilo de la Fuente‐Sandoval, Arsime Demjaha, Kara Dempster, Kim Q., Fei Du, Peter Falkai, Beata Galińska-Skok, Jürgen Gallinat, Charles Gasparovic, Cedric E. Ginestet, Naoki Gotō, Ariel Graff‐Guerrero, Beng-Choon Ho, Oliver Howes, Sameer Jauhar, Peter Jeon, Takeshi Kato, Charles A. Kaufmann, Lawrence S. Kegeles, Matcheri S. Keshavan, Sang-Young Kim, Hiroshi Kunugi, John Lauriello, Edith J. Liemburg, Meghan McIlwain, Gemma Modinos, Elias Mouchlianitis, Jun Nakamura, Igor Nenadić, Döst Öngür, Miho Ota, Lena Palaniyappan, Christos Pantelis, Eric Plitman, Sotirios Posporelis, Scot E. Purdon, Jürgen R. Reichenbach, Perry F. Renshaw, Bruce Russell, Akira Sawa, Martin Schaefer, Dikoma C. Shungu, Stefan Smesny, Jeffrey A. Stanley, James Stone, Agata Szulc, Reggie Taylor, Katharine N. Thakkar, Jean Théberge, Philip G. Tibbo, Thérèse van Amelsvoort, Jerzy Walecki, Peter Williamson, Stephen Wood, Lijing Xin, Hidenori Yamasue
Software Mentions: 1
Published: over 4 years ago

10.1093/molbev/msab199

BUSCO Update: Novel and Streamlined Workflows along with Broader and Deeper Phylogenetic Coverage for Scoring of Eukaryotic, Prokaryotic, and Viral Genomes
Cited by: 1,440
Author(s): Mosè Manni, Matthew Berkeley, Mathieu Seppey, Felipe A. Simão, Evgeny M. Zdobnov
Software Mentions: 1
Published: over 4 years ago

10.1042/BSR20204421

Traditional Chinese medicine Bu-Shen-Jian-Pi-Fang attenuates glycolysis and immune escape in clear cell renal cell carcinoma: results based on network pharmacology
Cited by: 11
Author(s): Jinzhou Zheng, Wenhao Xu, Wangrui Liu, Haijia Tang, Jin-Gen Lu, Kyeong-Nam Yu, Xianrang Song, Feng Li, Yu Wang, Rui Wang, Lili Chen, Ye Zhang, Yunhua Qiu, Gaomeng Wei, Xiqiu Zhou, Jianfeng Yang
Software Mentions: 1
Published: over 4 years ago

10.1001/jamanetworkopen.2021.10775

Medication Use Patterns in Hospitalized Patients With COVID-19 in California During the Pandemic
Cited by: 16
Author(s): Jonathan H. Watanabe, Jimmy Kwon, Bin Nan, Shira R. Abeles, Stanley Jia, Sanjay R. Mehta
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pone.0233315

Distribution of class 1 integrons in historic and contemporary collections of human pathogenic Escherichia coli
Cited by: 5
Author(s): Susanne Sütterlin, James E. Bray, Martin C. J. Maiden, Eva Tano
Software Mentions: 1
Published: over 5 years ago

10.1093/cid/cix185

Treatment Response in Enteric Fever in an Era of Increasing Antimicrobial Resistance: An Individual Patient Data Analysis of 2092 Participants Enrolled into 4 Randomized, Controlled Trials in Nepal
Cited by: 36
Author(s): Corinne N. Thompson, Abhilasha Karkey, Sabina Dongol, Amit Arjyal, Marcel Wolbers, Thomas C. Darton, Jeremy Farrar, Guy Thwaites, Christiane Dolecek, Buddha Basnyat, Stephen Baker
Software Mentions: 1
Published: almost 9 years ago

Projects: cran: ggplot2

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Papers Mentioning ggplot2 11,441