cran: ggplot2 | Projects | Ecosyste.ms: Papers

10.1371/journal.pgen.1004423

Phenotypic Dissection of Bone Mineral Density Reveals Skeletal Site Specificity and Facilitates the Identification of Novel Loci in the Genetic Regulation of Bone Mass Attainment
Cited by: 126
Author(s): John P. Kemp, Carolina Medina‐Gomez, Karol Estrada, Beaté St Pourcain, Denise H.M. Heppe, Nicole M. Warrington, Ling Oei, Susan M. Ring, Claudia J. Kruithof, Nicholas J. Timpson, Lisa E. Wolber, Sjur Reppe, Kaare M. Gautvik, Elin Grundberg, Bing Ge, Bram C. J. van der Eerden, Jeroen van de Peppel, Matthew A. Hibbs, Cheryl Ackert‐Bicknell, Kwangbom Choi, Daniel L. Koller, Michael J. Econs, Frances Williams, Tatiana Foroud, M. Carola Zillikens, Claes Ohlsson, Albert Hofman, André G. Uitterlinden, George Davey Smith, Vincent W. V. Jaddoe, Jonathan H Tobias, Fernando Rivadeneira, David M. Evans
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pgen.1005602

Genomic Insights into the Ancestry and Demographic History of South America
Cited by: 186
Author(s): Julian R. Homburger, Andrés Moreno‐Estrada, Christopher R. Gignoux, Dominic Nelson, Elena Sánchez, Patricia A. Ortiz-Tello, Bernardo A. Pons-Estel, Eduardo Acevedo‐Vásquez, Pedro Miranda, Carl D. Langefeld, Simon Gravel, Marta E. Alarcón‐Riquelme, Carlos D. Bustamante
Software Mentions: 1
Published: almost 11 years ago

10.1186/s12862-018-1249-3

Three new Diplozoidae mitogenomes expose unusual compositional biases within the Monogenea class: implications for phylogenetic studies
Cited by: 25
Author(s): Dong Zhang, Hong Zou, Shan Wu, Ming Li, Ivan Jakovlić, Jin Zhang, Rong Chen, Wen X. Li, Gui T. Wang
Software Mentions: 1
Published: about 8 years ago

10.1186/s12862-018-1314-y

Two’s company, three’s a crowd: co-occurring pollinators and parasite species in Breynia oblongifolia (Phyllanthaceae)
Cited by: 6
Author(s): Jonathan T. D. Finch, Sally A. Power, Justin A. Welbergen, James M. Cook
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41597-020-00623-x

A relational database to identify differentially expressed genes in the endometrium and endometriosis lesions
Cited by: 23
Author(s): Michael Gabriel, Vidal Fey, Taija Heinosalo, Prem Raj Adhikari, Kalle T. Rytkönen, Tuomo Komulainen, Kaisa Huhtinen, Teemu D. Laajala, Harri Siitari, Arho Virkki, Pia Suvitie, Harry Kujari, Tero Aittokallio, Antti Perheentupa, Matti Poutanen
Software Mentions: 1
Published: about 6 years ago

10.1186/s12862-019-1438-8

Purifying selection does not drive signatures of convergent local adaptation of lodgepole pine and interior spruce
Cited by: 1
Author(s): Mi Lu, Kathryn A. Hodgins, Jon C. Degner, Sam Yeaman
Software Mentions: 1
Published: over 7 years ago

10.3390/ani10010157

Circadian Rhythm of Salivary Immunoglobulin A and Associations with Cortisol as A Stress Biomarker in Captive Asian Elephants (Elephas maximus)
Cited by: 9
Author(s): Tithipong Plangsangmas, Janine L. Brown, Chatchote Thitaram, Ayona Silva‐Fletcher, Katie L. Edwards, Veerasak Punyapornwithaya, Patcharapa Towiboon, Chaleamchat Somgird
Software Mentions: 1
Published: almost 7 years ago

10.1186/s12862-017-1022-z

Drift, selection, or migration? Processes affecting genetic differentiation and variation along a latitudinal gradient in an amphibian
Cited by: 27
Author(s): María Cortázar-Chinarro, Ella Zoe Lattenkamp, Yvonne Meyer‐Lucht, Émilien Luquet, Anssi Laurila, Jacob Höglund
Software Mentions: 1
Published: about 9 years ago

10.1038/srep01801

Quantifying Wikipedia Usage Patterns Before Stock Market Moves
Cited by: 234
Author(s): Helen Susannah Moat, Chester Curme, Adam Avakian, Dror Y. Kenett, H. Eugene Stanley, Tobias Preis
Software Mentions: 1
Published: over 13 years ago

10.1186/s12862-017-1062-4

Co-founding ant queens prevent disease by performing prophylactic undertaking behaviour
Cited by: 8
Author(s): Christopher D. Pull, Sylvia Cremer
Software Mentions: 1
Published: about 9 years ago

10.1038/srep10265

The anatomy of urban social networks and its implications in the searchability problem
Cited by: 34
Author(s): Carlos Herrera-Yagüe, Christian Schneider, Thomas Couronné, Zbigniew Smoreda, R. M. Benito, Pedro J. Zufiria, Marta C. González
Software Mentions: 1
Published: over 11 years ago

10.18632/aging.203149

Association of changes in self-reported sleep duration with mild cognitive impairment in the elderly: a longitudinal study
Cited by: 7
Author(s): Xiyan Wang, Yan Chen, Bixuan Yue, Sifan Li, Qitong Liu, Qiaoyu Li, Li Lin, Jiangwei Sun
Software Mentions: 1
Published: over 5 years ago

10.1186/s12862-016-0837-3

PhyInformR: phylogenetic experimental design and phylogenomic data exploration in R
Cited by: 38
Author(s): Alex Dornburg, Jeffrey Nicholas Fisk, Jules A. Tamagnan, Jeffrey P. Townsend
Software Mentions: 1
Published: almost 10 years ago

10.1186/s12873-021-00495-3

Effects of the COVID-19 pandemic on trauma-related emergency medical service calls: a retrospective cohort study
Cited by: 7
Author(s): Michael Azbel, Mikko Heinänen, Mitja Lääperi, Markku Kuisma
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-017-12122-y

The ClpXP protease is dispensable for degradation of unfolded proteins in Staphylococcus aureus
Cited by: 42
Author(s): Steen G. Stahlhut, Abdulelah A. Alqarzaee, Camilla Jensen, Niclas S. Fisker, Andreia Pereira, Mariana G. Pinho, Vinai Chittezham Thomas, Dorte Frees
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-017-12538-6

Using computer simulation models to investigate the most promising microRNAs to improve muscle regeneration during ageing
Cited by: 16
Author(s): Carole J. Proctor, Katarzyna Goljanek‐Whysall
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0177013

Leopard in a tea-cup: A study of leopard habitat-use and human-leopard interactions in north-eastern India
Cited by: 55
Author(s): Aritra Kshettry, Srinivas Vaidyanathan, Vidya Athreya
Software Mentions: 1
Published: over 9 years ago

10.1186/s12862-021-01756-2

Care-giver identity impacts offspring development and performance in an annually social bumble bee
Cited by: 7
Author(s): Claudinéia Pereira Costa, Kenneth C. Fisher, Blanca M. Guillén, Naoaki Yamanaka, Guy Bloch, S. Hollis Woodard
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-017-13215-4

Non-Mendelian assortment of homologous autosomes of different sizes in males is the ancestral state in the Caenorhabditis lineage
Cited by: 13
Author(s): Tho Son Le, Fang-Jung Yang, Yun-Hua Lo, Tiffany Chang, Jung-Chen Hsu, Chia-Yi Kao, John Wang
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-017-13306-2

Unwavering Pathobiology of Volumetric Muscle Loss Injury
Cited by: 91
Author(s): Sarah M. Greising, Jessica C. Rivera, Stephen M. Goldman, Alain Watts, Carlos A. Aguilar, Benjamin T. Corona
Software Mentions: 1
Published: about 9 years ago

10.1186/s12898-020-00301-x

Prevalence of monarch (Danaus plexippus) and queen (Danaus gilippus) butterflies in West Texas during the fall of 2018
Cited by: 3
Author(s): Matthew Z. Brym, Cassandra Henry, Shannon P. Lukashow-Moore, Brett J. Henry, Natasja van Gestel, Ronald J. Kendall
Software Mentions: 1
Published: over 6 years ago

10.1186/s12898-020-00334-2

Diversity of entomopathogenic fungi associated with Mediterranean fruit fly (Ceratitis capitata (Diptera: Tephritidae)) in Moroccan Argan forests and nearby area: impact of soil factors on their distribution
Cited by: 11
Author(s): Ayoub Hallouti, Mohamed Aït Hamza, A. Zahidi, Rachid Ait Hammou, Rachid Bouharroud, A. Ait Ben Aoumar, H. Boubaker
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-017-15231-w

Chemical Similarity Enrichment Analysis (ChemRICH) as alternative to biochemical pathway mapping for metabolomic datasets
Cited by: 224
Author(s): Dinesh Kumar Barupal, Oliver Fiehn
Software Mentions: 1
Published: almost 9 years ago

10.3390/ijms22094721

SWATH Based Quantitative Proteomics Reveals Significant Lipid Metabolism in Early Myopic Guinea Pig Retina
Cited by: 15
Author(s): Jingfang Bian, Ying-Hon Sze, Dennis Y. Tse, Chi‐Ho To, Sally A McFadden, Carly Siu Yin Lam, King-Kit Li, Terry Lam
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-017-15152-8

Genomic and epidemiological characterisation of a dengue virus outbreak among blood donors in Brazil
Cited by: 40
Author(s): Nuno Rodrigues Faria, Antônio Charlys da Costa, José Lourenço, Paula Loureiro, Maria Esther Lopes, Roberto Marques Ribeiro, Cecília Salete Alencar, Moritz U. G. Kraemer, Christian Julián Villabona-Arenas, Chieh-Hsi Wu, Julien Thézé, Kamran Khan, Shannon Brent, Camila Malta Romano, Eric Delwart, Brian Custer, Michael P. Busch, Oliver G. Pybus, Éster Cerdeira Sabino
Software Mentions: 1
Published: almost 9 years ago

10.1186/s12861-018-0171-7

Cell cycle accumulation of the proliferating cell nuclear antigen PCN-1 transitions from continuous in the adult germline to intermittent in the early embryo of C. elegans
Cited by: 7
Author(s): Zuzana Kocsisova, Kerry Kornfeld, Tim Schedl
Software Mentions: 1
Published: over 8 years ago

10.18632/aging.103163

miR-125a-5p inhibits glycolysis by targeting hexokinase-II to improve pulmonary arterial hypertension
Cited by: 14
Author(s): Luo Lu, Lusheng Xiao, Guili Lian, Huajun Wang, Liangdi Xie
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-017-15154-6

Blockade of CB1 cannabinoid receptor alters gut microbiota and attenuates inflammation and diet-induced obesity
Cited by: 106
Author(s): Pegah Mehrpouya-Bahrami, Kumaraswamy Naidu Chitrala, Mitra S. Ganewatta, Chuanbing Tang, E. Angela Murphy, Reilly T. Enos, Kandy T. Velázquez, Jamie McCellan, Mitzi Nagarkatti, Prakash Nagarkatti
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-017-15980-8

Field sampling marine plankton for biodiscovery
Cited by: 8
Author(s): Richard Andre Ingebrigtsen, Espen Hansen, Jeanette Hammer Andersen, Hans Christian Eilertsen
Software Mentions: 1
Published: almost 9 years ago

10.1186/s13071-020-04244-6

Fluorescent bead-based serological detection of Toxoplasma gondii infection in chickens
Cited by: 7
Author(s): Benedikt T. Fabian, Fatima Hedar, Martin Koethe, Berit Bangoura, Pavlo Maksimov, Franz Josef Conraths, Isabelle Villena, Dominique Aubert, Frank Seeber, Gereon Schares
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pgen.1000928

Genome-Wide Association Study of Lp-PLA2 Activity and Mass in the Framingham Heart Study
Cited by: 71
Author(s): Sunil Suchindran, D Rivedal, John R. Guyton, Tom Milledge, Xiaoyi Gao, Ashlee M. Benjamin, Jennifer Rowell, Geoffrey S. Ginsburg, Jeanette McCarthy
Software Mentions: 1
Published: over 16 years ago

10.1038/s41598-017-17723-1

Central European Woolly Mammoth Population Dynamics: Insights from Late Pleistocene Mitochondrial Genomes
Cited by: 30
Author(s): James A. Fellows Yates, Dorothée G. Drucker, Ella Reiter, Simon Heumos, Frido Welker, Susanne C. Münzel, Piotr Wojtal, Martina Lázničková‐Galetová, Nicholas J. Conard, Alexander Herbig, Hervé Bocherens, Johannes Krause
Software Mentions: 1
Published: almost 9 years ago

10.1186/s12885-018-5254-0

Programmed cell death ligand 1 (PD-L1, CD274) in cholangiocarcinoma – correlation with clinicopathological data and comparison of antibodies
Cited by: 28
Author(s): Mark Kriegsmann, Stephanie Roessler, Katharina Kriegsmann, Marcus Renner, Rémi Longuespée, Thomas Albrecht, M. Loeffler, Stephan Singer, Arianeb Mehrabi, Monika Vogel, Anita Pathil, Bruno Köhler, Christoph Springfeld, Christian Rupp, Karl Heinz Weiss, Benjamin Goeppert
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41598-017-18317-7

Analysis of sequential hair segments reflects changes in the metabolome across the trimesters of pregnancy
Cited by: 34
Author(s): Thibaut Delplancke, Jamie V. de Seymour, Chao Tong, Karolina Sulek, Yinyin Xia, Hua Zhang, Ting Li Han, Philip N. Baker
Software Mentions: 1
Published: almost 9 years ago

10.3390/ijms22105183

Biophysical and Biochemical Comparison of Extracellular Vesicles Produced by Infective and Non-Infective Stages of Trypanosoma cruzi
Cited by: 16
Author(s): Lissette Retana Moreira, Alexa Prescilla-Ledezma, Alberto Cornet-Gómez, Fernando Gervilla Linares, Ana Belén Jódar-Reyes, Jorge I. González Fernández, Ana Karina Ibarrola Vannucci, Luis Miguel De Pablos, Antonio Osuna
Software Mentions: 1
Published: over 5 years ago

10.1186/s13071-021-04923-y

Quantitative PCR assay for the detection of Aedes vigilax in mosquito trap collections containing large numbers of morphologically similar species and phylogenetic analysis of specimens collected in Victoria, Australia
Cited by: 1
Author(s): Peter T Mee, Shani Wong, Karen Brown, Stacey E. Lynch
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pgen.1008315

Mutations in ARL2BP, a protein required for ciliary microtubule structure, cause syndromic male infertility in humans and mice
Cited by: 18
Author(s): Abigail R. Moye, Nicola Bedoni, Jessica G. Cunningham, Urikhan Sanzhaeva, Eric S. Tucker, Peter H. Mathers, Virginie G. Peter, Mathieu Quinodoz, Liliana P Paris, Luisa Coutinho Santos, Pedro Camacho, Madeleine G. Purcell, Abbie C. Winkelmann, James A. Foster, Elena N. Pugacheva, Carlo Rivolta, Visvanathan Ramamurthy
Software Mentions: 1
Published: about 7 years ago

10.3390/ijms22105247

BMAL1 Knockdown Leans Epithelial–Mesenchymal Balance toward Epithelial Properties and Decreases the Chemoresistance of Colon Carcinoma Cells
Cited by: 17
Author(s): Yuan Zhang, Aurore Devocelle, Christophe Desterke, Lucas Eduardo Botelho de Souza, Éva Hadadi, Hervé Acloque, Adlen Foudi, Xiang Yao, Annabelle Ballesta, Yunhua Chang, Julien Giron‐Michel
Software Mentions: 1
Published: over 5 years ago

10.18632/aging.202406

Modeling paraquat-induced lung fibrosis in C. elegans reveals KRIT1 as a key regulator of collagen gene transcription
Cited by: 5
Author(s): Guanghui Deng, Le Li, Yan‐Qiong Ouyang
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pgen.1006908

The nucleoid occlusion factor Noc controls DNA replication initiation in Staphylococcus aureus
Cited by: 40
Author(s): Ting Pang, Xindan Wang, Hoong Chuin Lim, Thomas G. Bernhardt, David Z. Rudner
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pgen.1007512

Discovery of a dual protease mechanism that promotes DNA damage checkpoint recovery
Cited by: 16
Author(s): Peter E. Burby, Zackary W. Simmons, Jeremy W. Schroeder, Lyle A. Simmons
Software Mentions: 1
Published: over 8 years ago

10.1186/s13071-018-3144-6

Mitochondrial genomes of two diplectanids (Platyhelminthes: Monogenea) expose paraphyly of the order Dactylogyridea and extensive tRNA gene rearrangements
Cited by: 33
Author(s): Dong Zhang, Wen X. Li, Hong Zou, Shan Wu, Ming Li, Ivan Jakovlić, Jin Zhang, Rong Chen, Gui T. Wang
Software Mentions: 1
Published: almost 8 years ago

10.3390/v13010114

Studies on the Efficacy, Potential Cardiotoxicity and Monkey Pharmacokinetics of GLP-26 as a Potent Hepatitis B Virus Capsid Assembly Modulator
Cited by: 13
Author(s): Selwyn J. Hurwitz, Noreen McBrearty, Alla Arzumanyan, Eugene Bichenkov, Sijia Tao, Leda Bassit, Zhe Chen, James J. Kohler, Franck Amblard, Mark A. Feitelson, Raymond F. Schinazi
Software Mentions: 1
Published: almost 6 years ago

10.3390/v11040332

Experimental Infection of Sand Flies by Massilia Virus and Viral Transmission by Co-Feeding on Sugar Meal
Cited by: 9
Author(s): Magdalena Jancarova, Laurence Bichaud, Jana Hlaváčová, Stéphane Priet, Nazlı Ayhan, Tatiana Spitzová, Petr Volf, Rémi N. Charrel
Software Mentions: 1
Published: over 7 years ago

10.1186/s12885-021-07837-1

Novel immune-related genes in the tumor microenvironment with prognostic value in breast cancer
Cited by: 7
Author(s): Wen Tan, Maomao Liu, Liangshan Wang, Yang Guo, Chunhong Wei, Shuqi Zhang, Chengyu Luo, Nan Liu
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pgen.1007886

Narya, a RING finger domain-containing protein, is required for meiotic DNA double-strand break formation and crossover maturation in Drosophila melanogaster
Cited by: 8
Author(s): Cathleen M. Lake, Rachel J. Nielsen, Amanda M. Bonner, Salam Eche, Sanese Kania White-Brown, Kim S. McKim, R. Scott Hawley
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41598-018-22396-5

The early effects of external and internal strategies on working memory updating training
Cited by: 41
Author(s): Matti Laine, Daniel Fellman, Otto Waris, Thomas J. Nyman
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-018-22665-3

Investigation of 12 X-STR loci in Mongolian and Eastern Han populations of China with comparison to other populations
Cited by: 15
Author(s): Ruiyang Tao, Jiashuo Zhang, Yingnan Bian, Rixia Dong, Xiling Liu, Chi Jin, Ruxin Zhu, Suhua Zhang, Chengtao Li
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-018-22967-6

Lack of impact of the El Hierro (Canary Islands) submarine volcanic eruption on the local phytoplankton community
Cited by: 12
Author(s): Markel Gómez‐Letona, Javier Arı́stegui, Antonio G. Ramos, María F. Montero, Josep Coca
Software Mentions: 1
Published: over 8 years ago

10.1186/s12885-021-08108-9

Multi gene mutation signatures in colorectal cancer patients: predict for the diagnosis, pathological classification, staging and prognosis
Cited by: 19
Author(s): Yan Zhuang, Hailong Wang, Da Jiang, Ying Liu, Lixia Feng, Caijuan Tian, Mingyu Pu, Xiaowei Wang, Jiangyan Zhang, Y. Hu, Pengfei Liu
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-018-23846-w

Genome-wide comparative and evolutionary analysis of Calmodulin-binding Transcription Activator (CAMTA) family in Gossypium species
Cited by: 30
Author(s): Poonam Pant, Zahra Iqbal, Bhoopendra K. Pandey, Samir V. Sawant
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pgen.1008432

UMAP reveals cryptic population structure and phenotype heterogeneity in large genomic cohorts
Cited by: 151
Author(s): Alex Diaz-Papkovich, Luke Anderson-Trocmé, Chief Ben-Eghan, Simon Gravel
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pgen.1004167

Insertional Mutagenesis and Deep Profiling Reveals Gene Hierarchies and a Myc/p53-Dependent Bottleneck in Lymphomagenesis
Cited by: 18
Author(s): Camille Huser, Kathryn Gilroy, Jeroen de Ridder, Anna Kilbey, Gillian Borland, Nancy MacKay, Alma Jenkins, Margaret Bell, Paweł Herzyk, Louise van der Weyden, David J. Adams, Alistair G. Rust, Ewan R. Cameron, James C. Neil
Software Mentions: 1
Published: over 12 years ago

10.1186/s12885-021-08171-2

Comparison of breast cancer surrogate subtyping using a closed-system RT-qPCR breast cancer assay and immunohistochemistry on 100 core needle biopsies with matching surgical specimens
Cited by: 7
Author(s): Slavica Janeva, Toshima Z. Parris, Salmir Nasic, Shahin De Lara, Karin Larsson, Riccardo A. Audisio, Roger Olofsson Bagge, Anikó Kovács
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-018-25161-w

Action-effect related motor adaptation in interactions with everyday devices
Cited by: 14
Author(s): János Horváth, Botond Bíró, Bence Neszmélyi
Software Mentions: 1
Published: over 8 years ago

10.3390/ani11030786

Housing, Husbandry and Welfare of a “Classic” Fish Model, the Paradise Fish (Macropodus opercularis)
Cited by: 4
Author(s): Anita Rácz, Gábor Adorján, Erika Fodor, Boglárka Sellyei, Mohammed Essa Marghany Tolba, Ádám Miklósi, Máté Varga
Software Mentions: 1
Published: over 5 years ago

10.1186/s12985-018-1095-3

Virome analyses of Hevea brasiliensis using small RNA deep sequencing and PCR techniques reveal the presence of a potential new virus
Cited by: 9
Author(s): Paula Luize Camargos Fonseca, Fernanda Badotti, Tatiana Flávia Pinheiro de Oliveira, Antônio Augusto Fonseca, Aline B. M. Vaz, Luiz Marcelo Ribeiro Tomé, Jônatas Santos Abrahão, João Trindade Marques, Giliane S. Trindade, Priscila Chaverri, Eric Roberto Guimarães Rocha Aguiar, Aristóteles Goés-Neto
Software Mentions: 1
Published: almost 8 years ago

10.1186/1743-422X-10-62

Mutation Reporter Tool: An online tool to interrogate loci of interest, with its utility demonstrated using hepatitis B virus
Cited by: 15
Author(s): Trevor Graham Bell, Anna Kramvis
Software Mentions: 1
Published: over 13 years ago

10.1007/s00428-021-03100-x

CD73 expression in normal, hyperplastic, and neoplastic thyroid: a systematic evaluation revealing CD73 overexpression as a feature of papillary carcinomas
Cited by: 3
Author(s): Inês Monteiro, Edoardo Missiaglia, Amedeo Sciarra, João Vasco Santos, Justine Bouilly, Pedro Romero, Christine Sempoux, Laurence de Leval
Software Mentions: 1
Published: over 5 years ago

10.1186/s13071-019-3824-x

Assessment of multiplex Onchocerca volvulus peptide ELISA in non-endemic tropical regions
Cited by: 7
Author(s): Ole Lagatie, Elodie Granjon, Maurice R. Odiere, Maan Zrein, Lieven Stuyver
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0233709

From nutrients to competition processes: Habitat specific threats to Arnica montana L. populations in Hesse, Germany
Cited by: 9
Author(s): Verena Hollmann, Tobias W. Donath, Florian Grammel, Tina Himmighofen, Ute Zerahn, Ilona Leyer
Software Mentions: 1
Published: over 6 years ago

10.1186/s13071-018-2910-9

Comparative mitogenomics supports synonymy of the genera Ligula and Digramma (Cestoda: Diphyllobothriidae)
Cited by: 16
Author(s): Wen X. Li, Pei P. Fu, Dong Zhang, K. Boyce, Bingwen Xi, Hong Zou, Ming Li, Shan Wu, Gui T. Wang
Software Mentions: 1
Published: over 8 years ago

10.1186/s13046-016-0317-z

Pancreatic cancer cell-derived IGFBP-3 contributes to muscle wasting
Cited by: 37
Author(s): Xiuyan Huang, Zili Huang, Juhong Yang, Yingbin Xu, Jiusong Sun, Qi Zheng, Chunyao Wei, Wei Song, Yuan Zhang
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0227250

Dynamic Extreme Aneuploidy (DEA) in the vegetable pathogen Phytophthora capsici and the potential for rapid asexual evolution
Cited by: 13
Author(s): Jian Hu, Sandesh Shrestha, Yuxin Zhou, Joann Mudge, Xili Liu, Kurt Lamour
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0187568

Computer simulation models as a tool to investigate the role of microRNAs in osteoarthritis
Cited by: 12
Author(s): Carole J. Proctor, Graham R. Smith
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0227003

Plasma proteome profiling of freshwater and seawater life stages of rainbow trout (Oncorhynchus mykiss)
Cited by: 15
Author(s): Bernat Morro, Mary K. Doherty, Pablo Balseiro, Sigurd O. Handeland, Simon Mackenzie, Harald Sveier, Amaya Albalat
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-018-25497-3

Association between amniotic fluid evaluation and fetal biometry: a prospective French “Flash” study
Cited by: 3
Author(s): Florent Fuchs, Safa Aouinti, Manel Souaied, Valentin Keller, Marie‐Christine Picot, N. Fries, Jean Marc Ayoubi, Olivier Picone
Software Mentions: 1
Published: over 8 years ago

10.1186/s13567-014-0090-y

Phylodynamic reconstruction of O CATHAY topotype foot-and-mouth disease virus epidemics in the Philippines
Cited by: 20
Author(s): Antonello Di Nardo, Nick J. Knowles, Jemma Wadsworth, Daniel T. Haydon, Donald P. King
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0101151

Miz-1 Activates Gene Expression via a Novel Consensus DNA Binding Motif
Cited by: 13
Author(s): Bonnie L. Barrilleaux, Dana Burow, Sarah H. Lockwood, Abigail Yu, David J. Segal, Paul S. Knoepfler
Software Mentions: 1
Published: over 12 years ago

10.18632/aging.103223

MiR-16-5p regulates postmenopausal osteoporosis by directly targeting VEGFA
Cited by: 28
Author(s): Tao Yu, Xiaomeng You, Haichao Zhou, Wenbao He, Zihua Li, Bing Li, Xia Jiang, Hongying Zhu, Youguang Zhao, Guangrong Yu, Yuan Xiong, Yunfeng Yang
Software Mentions: 1
Published: over 6 years ago

10.1186/s12885-015-1909-2

Inhibiting inducible miR-223 further reduces viable cells in human cancer cell lines MCF-7 and PC3 treated by celastrol
Cited by: 25
Author(s): Lu Cao, Xue Zhang, Fanfan Cao, Ying Wang, Yu-fan Shen, Chen Yang, Georges Uzan, Bin Peng, Denghai Zhang
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0190345

Bioenergetics modeling of the annual consumption of zooplankton by pelagic fish feeding in the Northeast Atlantic
Cited by: 24
Author(s): Eneko Bachiller, Kjell Rong Utne, Teunis Jansen, Geir Huse
Software Mentions: 1
Published: almost 9 years ago

10.1186/s12885-020-07523-8

microRNA-451a promoter methylation regulated by DNMT3B expedites bladder cancer development via the EPHA2/PI3K/AKT axis
Cited by: 10
Author(s): Beibei Liu, Wei Sun, Wuyue Gao, Liqiang Li, Zhenxue Cao, Xiaohuai Yang, Jianmin Liu, Yuanyuan Guo
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pgen.1008920

Developmental loss of neurofibromin across distributed neuronal circuits drives excessive grooming in Drosophila
Cited by: 11
Author(s): Lanikea B. King, Tamara Boto, Valentina Botero, Ari Aviles, Breanna M. Jomsky, Chevara Joseph, James A. Walker, Seth M. Tomchik
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-018-25708-x

Emotional reactivity and perspective-taking in individuals with and without severe depressive symptoms
Cited by: 5
Author(s): Constance Imbault, Victor Kuperman
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0188824

Technological variability in the Late Palaeolithic lithic industries of the Egyptian Nile Valley: The case of the Silsilian and Afian industries
Cited by: 5
Author(s): Alice Leplongeon
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0208548

Genomic characterization of the Braque Français type Pyrénées dog and relationship with other breeds
Cited by: 8
Author(s): Salvatore Mastrangelo, Filippo Biscarini, Marco Tolone, Barbara Auzino, Marco Ragatzu, Andrea Spaterna, Roberta Ciampolini
Software Mentions: 1
Published: almost 8 years ago

10.1186/s13046-019-1384-8

Hypoxic exosomes facilitate angiogenesis and metastasis in esophageal squamous cell carcinoma through altering the phenotype and transcriptome of endothelial cells
Cited by: 82
Author(s): Yu Mao, Yimin Wang, Dong Liu, Yunjie Zhang, Yanqiu Zhang, Chao Wang, Qiang Zhang, Shuanying Yang, Liyan Cao, Mengjie Zhang, Xin Li, Zhanzhao Fu
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pone.0099899

A Method for Detecting Long Non-Coding RNAs with Tiled RNA Expression Microarrays
Cited by: 12
Author(s): Sigrún H. Lund, Daníel F. Guðbjartsson, Thorunn Rafnar, Ásgeir Sigurðsson, Sigurjon A. Gudjonsson, Jūlı́us Guðmundsson, Kári Stefánsson, Gunnar Stefánsson
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0248124

Kinesthetic engagement in Gestalt evaluation outscores analytical ‘atomic feature’ evaluation in perceiving aging in crystallization images of agricultural products
Cited by: 2
Author(s): Paul Doesburg, Jürgen Fritz, Miriam Athmann, Roya Bornhütter, Nicolaas Busscher, Uwe Geier, Gaby Mergardt, Claudia Scherr
Software Mentions: 1
Published: over 5 years ago

10.1074/mcp.RA118.001307

The mRNA-bound Proteome of Leishmania mexicana: Novel Genetic Insight into an Ancient Parasite
Cited by: 32
Author(s): Luis Miguel De Pablos, Tiago Luiz Ferreira, Adam Dowle, Sarah Forrester, Ewan Parry, Katherine Newling, Pegine Walrad
Software Mentions: 1
Published: over 7 years ago

10.1074/mcp.RA119.001472

Multibatch TMT Reveals False Positives, Batch Effects and Missing Values
Cited by: 115
Author(s): Alejandro Brenes, Jens Hukelmann, Dalila Bensaddek
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pone.0233315

Distribution of class 1 integrons in historic and contemporary collections of human pathogenic Escherichia coli
Cited by: 5
Author(s): Susanne Sütterlin, James E. Bray, Martin C. J. Maiden, Eva Tano
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0220882

The largest fish in the world’s biggest river: Genetic connectivity and conservation of Arapaima gigas in the Amazon and Araguaia-Tocantins drainages
Cited by: 18
Author(s): Izeni Pires Farias, Stuart C. Willis, Adam Souza de Alencar Leão, Júlia Tovar Verba, Marcelo Crossa, Fausto Foresti, Fábio Porto‐Foresti, Iracilda Sampaio, Tomas Hrbek
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pone.0169275

Quantifying the Carbon Balance of Forest Restoration and Wildfire under Projected Climate in the Fire-Prone Southwestern US
Cited by: 24
Author(s): Matthew D. Hurteau
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pone.0122273

Effect of Roux-en-Y Gastric Bypass Surgery on Bile Acid Metabolism in Normal and Obese Diabetic Rats
Cited by: 64
Author(s): Hina Y. Bhutta, Neetu Rajpal, Wendy B. White, Johannes M. Freudenberg, Yaping Liu, James M. Way, Deepak K. Rajpal, David C. Cooper, Andrew Young, Ali Tavakkoli, Lihong Chen
Software Mentions: 1
Published: over 11 years ago

10.18632/aging.101639

ZNF185 is a p53 target gene following DNA damage
Cited by: 9
Author(s): Artem Smirnov, Angela Cappello, Anna Maria Lena, Lucia Anemona, Alessandro Mauriello, Nicola Di Daniele, Margherita Annicchiarico-Petruzzelli, Gerry Melino, Eleonora Candi
Software Mentions: 1
Published: almost 8 years ago

10.1186/s13071-021-04604-w

High-elevational occurrence of two tick species, Ixodes ricinus and I. trianguliceps, at their northern distribution range
Cited by: 12
Author(s): Nicolas De Pelsmaeker, Lars Korslund, Øyvind Steifetten
Software Mentions: 1
Published: over 5 years ago

10.1016/j.molcel.2018.05.033

mRNA Deadenylation Is Coupled to Translation Rates by the Differential Activities of Ccr4-Not Nucleases
Cited by: 176
Author(s): M. Webster, Ying Hsin Chen, James A.W. Stowell, Najwa Alhusaini, Thomas J. Sweet, Brenton R. Graveley, Jeff Coller, Lori A. Passmore
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0086919

Pharmacogenetic-Based Efavirenz Dose Modification: Suggestions for an African Population and the Different CYP2B6 Genotypes
Cited by: 58
Author(s): Jackson Mukonzo, Joel Owen, Jasper Ogwal-Okeng, Ronald Bisaso Kuteesa, Sarah Nanzigu, Nelson Sewankambo, Lehana Thabane, Lars L. Gustafsson, Colin J.D. Ross, Eleni Aklillu
Software Mentions: 1
Published: over 12 years ago

10.1007/s00436-019-06414-7

Molecular detection of two major gastrointestinal parasite genera in cattle using a novel droplet digital PCR approach
Cited by: 13
Author(s): Paulius Baltrušis, Peter Halvarsson, Johan Höglund
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pgen.1007897

A specialized MreB-dependent cell wall biosynthetic complex mediates the formation of stalk-specific peptidoglycan in Caulobacter crescentus
Cited by: 29
Author(s): Maria Billini, Jacob Biboy, Juliane Kühn, Waldemar Vollmer, Martin Thanbichler
Software Mentions: 1
Published: over 7 years ago

10.1186/s12943-021-01308-8

The inflammatory kinase IKKα phosphorylates and stabilizes c-Myc and enhances its activity
Cited by: 19
Author(s): Bernhard Moser, Bernhard Hochreiter, José Basílio, Viola Gleitsmann, Anja Panhuber, Alan Pardo-Garcia, Bastian Hoesel, Manuel Salzmann, Ulrike Resch, Mamoona Noreen, Johannes A. Schmid
Software Mentions: 1
Published: almost 6 years ago

10.11604/pamj.supp.2020.35.2.24612

Estimating actual COVID-19 case numbers using cumulative death count-A method of measuring effectiveness of lockdown of non-essential activities: a South African case study
Cited by: 2
Author(s): Laura G. Cox, Clarence S. Yah
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0215665

Epidemiological and clinical features of Kawasaki disease in Spain over 5 years and risk factors for aneurysm development. (2011-2016): KAWA-RACE study group
Cited by: 38
Author(s): Elisa Fernández-Cooke, Ana Barrios Tascón, Judith Sánchez-Manubens, Jordi Antón, Carlos Grasa, Javier Aracil Santos, Enrique Villalobos Pinto, Daniel Clemente Garulo, Beatriz Mercader Rodríguez, Matilde Bustillo-Alonso, Esmeralda Núñez-Cuadros, María Luisa Navarro Gómez, Sara Domínguez‐Rodríguez, Cristina Calvo
Software Mentions: 1
Published: over 7 years ago

10.1186/s12943-020-01160-2

CircMRPS35 suppresses gastric cancer progression via recruiting KAT7 to govern histone modification
Cited by: 102
Author(s): Meng-Meng Jie, Yaran Wu, Mengyuan Gao, Xinzhe Li, Cheng Liu, Qin Ouyang, Qingyun Tang, Changyu Shan, Yang‐Fan Lv, Kebin Zhang, Qian Dai, Yang Chen, Shuo Zeng, Chenglin Li, Liting Wang, Fengtian He, C. Hu, Shi–Ming Yang
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0203503

Chronic fatigue syndrome patients have alterations in their oral microbiome composition and function
Cited by: 7
Author(s): Taiwu Wang, Li Yu, Cong Xu, Keli Pan, Minglu Mo, Mingxiang Duan, Yao Zhang, Hongyan Xiong
Software Mentions: 1
Published: about 8 years ago

10.1038/s41598-018-27785-4

Spatiotemporal disturbance characteristics determine functional stability and collapse risk of simulated microbial ecosystems
Cited by: 13
Author(s): Sara König, Anja Worrich, Thomas Banitz, Florian Centler, Hauke Harms, Matthias Kästner, Anja Miltner, Lukas Y. Wick, Martin Thullner, Karin Frank
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0252626

S-ketamine in patient-controlled analgesia reduces opioid consumption in a dose-dependent manner after major lumbar fusion surgery: A randomized, double-blind, placebo-controlled clinical trial
Cited by: 17
Author(s): Elina C. V. Brinck, T Virtanen, Sanna M. Mäkelä, Venla Soini, Ville-Veikko Hynninen, Jukka Mulo, Urmas Savolainen, Juho Rantakokko, Kreu Maisniemi, Antti Liukas, Klaus T. Olkkola, Vesa K. Kontinen, P. Tarkkila, Marko A. Peltoniemi, Teijo I. Saari
Software Mentions: 1
Published: over 5 years ago

10.3390/ani10111953

Integrative Analysis of Energy Partition Patterns and Plasma Metabolomics Profiles of Modern Growing Pigs Raised at Different Ambient Temperatures
Cited by: 6
Author(s): Shuai Zhang, Hang Gao, Xiongkun Yuan, Junjun Wang, Jianjun Zang
Software Mentions: 1
Published: about 6 years ago

Projects: cran: ggplot2

Enhanced Analysis

Science Score: 100/100

Bonuses:

Papers Mentioning ggplot2 11,441