Projects: cran: ggplot2

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/ggplot2

Create Elegant Data Visualisations Using the Grammar of Graphics
48 versions
Latest release: almost 3 years ago
4,921 dependent packages
2,865,232 downloads last month

Enhanced Analysis
Educational Contributors: wilke@austin.utexas.edu diggsb@ohsu.edu ruderman@usc.edu joran.elias@umontana.edu rjc2003@qatar-med.cornell.edu skopf@caltech.edu m.colombo@ed.ac.uk i.kosmidis@ucl.ac.uk melimore86@ufl.edu amurray@vt.edu nick.kennedy@ed.ac.uk dongzhuoer@mail.nankai.edu.cn benjamin.reisman@vanderbilt.edu briandk@umd.edu hye@ucsd.edu thiyanga.talagala@monash.edu brenstsr@miamioh.edu saladi@caltech.edu buyske@stat.rutgers.edu rjake@sas.upenn.edu mcmurdie@stanford.edu paul@stat.auckland.ac.nz claire.mcwhite@utexas.edu luke.mcguinness@bristol.ac.uk mdlama@wm.edu hjeppson@iastate.edu
Repository Activity:
Repository Owner: tidyverse (organization)
The tidyverse is a collection of R packages that share common principles and are designed to work together seamlessly
README Analysis:
Science Score: 100/100
Starting Score: 100 points
Bonuses:
  • +8 Academic maintainer emails
    1 maintainers with academic email addresses
  • +520 Educational commit emails
    26 contributors with educational email addresses
  • +18 Science terms in README
    9 scientific terms found in README

Very Likely Science (100)

Papers Mentioning ggplot2 11,441

10.1016/j.psyneuen.2018.02.031
Prevalence and correlates of low-grade systemic inflammation in adult psychiatric inpatients: An electronic health record-based study
Cited by: 75
Author(s): Emanuele F. Osimo, Rudolf N. Cardinal, Peter B. Jones, Golam M. Khandaker
Software Mentions: 1
Published: over 8 years ago
10.1007/s00213-018-4969-6
Validation and optimisation of a touchscreen progressive ratio test of motivation in male rats
Cited by: 17
Author(s): Jonathan M. Hailwood, Christopher Heath, Trevor W. Robbins, Lisa M. Saksida, Timothy J. Bussey
Software Mentions: 1
Published: about 8 years ago
10.1186/1471-2229-14-128
Genome-wide association for grain morphology in synthetic hexaploid wheats using digital imaging analysis
Cited by: 91
Author(s): Awais Rasheed, Xianchun Xia, Francis C. Ogbonnaya, Tariq Mahmood, Sheng Zhang, A. Mujeeb‐Kazi, Zhonghu He
Software Mentions: 1
Published: over 12 years ago
10.1017/S1368980017003275
Meeting UK dietary recommendations is associated with higher estimated consumer food costs: an analysis using the National Diet and Nutrition Survey and consumer expenditure data, 2008–2012
Cited by: 39
Author(s): Nicholas Jones, Tammy Y.N. Tong, Pablo Monsivais
Software Mentions: 1
Published: over 8 years ago
10.1371/journal.pone.0159086
How to Fairly Allocate Scarce Medical Resources: Ethical Argumentation under Scrutiny by Health Professionals and Lay People
Cited by: 46
Author(s): Pius Krütli, Thomas Rosemann, Kjell Törnblom, Timo Smieszek
Software Mentions: 1
Published: about 10 years ago
10.3389/fpls.2021.714066
Loss of Function of OsFBX267 and OsGA20ox2 in Rice Promotes Early Maturing and Semi-Dwarfism in γ-Irradiated IWP and Genome-Edited Pusa Basmati-1
Cited by: 2
Author(s): M. T. Andrew‐Peter‐Leon, Ramchander Selvaraj, K. K. Kumar, Mehanathan Muthamilarasan, Jeshima Khan Yasin, M. Arumugam Pillai
Software Mentions: 1
Published: almost 5 years ago
10.3389/fmicb.2019.00487
Detection of Aminoglycoside Resistant Bacteria in Sludge Samples From Norwegian Drinking Water Treatment Plants
Cited by: 15
Author(s): Ingvild Falkum Ullmann, Hege Smith Tunsjø, Monica Andreassen, Kaare Magne Nielsen, Vidar Lund, Colin Charnock
Software Mentions: 1
Published: over 7 years ago
10.1039/d0ra03872e
Sequential sequestrations increase the incorporation and retention of multiple growth factors in mineralized collagen scaffolds
Cited by: 10
Author(s): Aleczandria S. Tiffany, Maynard M. Dewey, Brendan A.C. Harley
Software Mentions: 1
Published: over 6 years ago
10.1098/rsos.150358
Differential responses of coral larvae to the colour of ambient light guide them to suitable settlement microhabitat
Cited by: 42
Author(s): Marie E. Strader, Sarah W. Davies, Mikhail V. Matz
Software Mentions: 1
Published: almost 11 years ago
10.1371/journal.pone.0085203
Aerodynamic Characteristics of a Feathered Dinosaur Measured Using Physical Models. Effects of Form on Static Stability and Control Effectiveness
Cited by: 20
Author(s): Dennis Evangelista, Cardona Griselda, Guenther-Gleason Eric, Tony L. Huynh, Austin Kwong, Marks Dylan, Neil Ray, Adrian Tisbe, Kyle Tse, M. A. R. Koehl
Software Mentions: 1
Published: over 12 years ago
10.1590/1414-431X20187183
Single-cell qPCR facilitates the optimization of hematopoietic differentiation in hPSCs/OP9 coculture system
Cited by: 1
Author(s): Haide Chen, Mengmeng Jiang, Lei Xiao, He Huang
Software Mentions: 1
Published: over 8 years ago
10.1098/rsos.150677
Predicting plant attractiveness to pollinators with passive crowdsourcing
Cited by: 18
Author(s): Christie A. Bahlai, Douglas A. Landis
Software Mentions: 1
Published: about 10 years ago
10.1371/journal.pone.0049406
A Generic Model to Simulate Air-Borne Diseases as a Function of Crop Architecture
Cited by: 13
Author(s): Pierre Casadebaig, Gauthier Quesnel, Michel Langlais, Robert Faivre
Software Mentions: 1
Published: over 13 years ago
10.1371/journal.pone.0176296
Ex vivo cultures combined with vivo-morpholino induced gene knockdown provide a system to assess the role of WT1 and GATA4 during gonad differentiation
Cited by: 13
Author(s): Lucas J. Rudigier, Christof Dame, Holger Scholz, Karin M. Kirschner
Software Mentions: 1
Published: over 9 years ago
10.1371/journal.pone.0190927
Localized zinc distribution in shark vertebrae suggests differential deposition during ontogeny and across vertebral structures
Cited by: 12
Author(s): Vincent Raoult, Nicholas R. Howell, David Zahra, Victor M. Peddemors, Daryl L. Howard, Martin D. de Jonge, Benjamin L. Buchan, Jane E. Williamson
Software Mentions: 1
Published: over 8 years ago
10.3389/fpls.2017.01586
Genome-Wide Association Study of Septoria tritici Blotch Resistance in Ethiopian Durum Wheat Landraces
Cited by: 43
Author(s): Yosef Gebrehawaryat Kidane, Bogale Nigir Hailemariam, Deȷene K. Mengistu, Carlo Fadda, Mario Enrico Pè, Matteo Dell’Acqua
Software Mentions: 1
Published: almost 9 years ago
10.3390/ijms22041830
Exploitation of Tolerance of Wheat Kernel Weight and Shape-Related Traits from Aegilops tauschii under Heat and Combined Heat-Drought Stresses
Cited by: 10
Author(s): Gamila Mohamed Idris Elhadi, Nasrein Mohamed Kamal, Yasir Serag Alnor Gorafi, Yuji Yamasaki, Kanenori Takata, Izzat S. A. Tahir, Michael Itam, Hiroyuki Tanaka, Hisashi Tsujimoto
Software Mentions: 1
Published: over 5 years ago
10.1038/srep17066
Tumor-selective use of DNA base excision repair inhibition in pancreatic cancer using the NQO1 bioactivatable drug, β-lapachone
Cited by: 47
Author(s): Gaurab Chakrabarti, Molly A. Silvers, Mariya Ilcheva, Yuliang Liu, Zachary Moore, Xuelian Luo, Jinming Gao, Glenda G. Anderson, Huan Liu, Venetia Sarode, David E. Gerber, Sandeep Burma, Ralph J. DeBerardinis, Stanton L. Gerson, David A. Boothman
Software Mentions: 1
Published: over 10 years ago
10.3389/fmicb.2019.02502
Microbiome Response to Hot Water Treatment and Potential Synergy With Biological Control on Stored Apples
Cited by: 47
Author(s): Birgit Wassermann, Peter Kusstatscher, Gabriele Berg
Software Mentions: 1
Published: almost 7 years ago
10.1186/s12951-020-00624-3
Saliva exosomes-derived UBE2O mRNA promotes angiogenesis in cutaneous wounds by targeting SMAD6
Cited by: 41
Author(s): Bobin Mi, Lang Chen, Yuan Xiong, Chenchen Yan, Hang Xue, Adriana C. Panayi, Jing Liu, Liangcong Hu, Yiqiang Hu, Faqi Cao, Yun Sun, Wu Zhou, Guohui Liu
Software Mentions: 1
Published: over 6 years ago
10.3389/fpls.2019.00317
Portable X-Ray Fluorescence Spectroscopy for Rapid and Cost-Effective Determination of Elemental Composition of Ground Forage
Cited by: 16
Author(s): John R. White, Louis M. McDonald, Thomas C. Griggs, Thomas J. Basden, Lee Drake
Software Mentions: 1
Published: over 7 years ago
10.1371/journal.pone.0112572
Metabolomic Analysis Using Ultra-Performance Liquid Chromatography-Quadrupole-Time of Flight Mass Spectrometry (UPLC-Q-TOF MS) Uncovers the Effects of Light Intensity and Temperature under Shading Treatments on the Metabolites in Tea
Cited by: 68
Author(s): Qunfeng Zhang, Yuanzhi Shi, Lei Ma, Xiaoyun Yi, Jianyun Ruan
Software Mentions: 1
Published: almost 12 years ago
10.1038/srep21524
Pyruvate Kinase M2 Activates mTORC1 by Phosphorylating AKT1S1
Cited by: 84
Author(s): Chang He, Yangyang Bian, Yu Xue, Zexian Liu, Kai Zhou, Cui Fang Yao, Yan Lin, Han Fa Zou, Luo Fang, Yuan Qu, Jian Zhao, Ming Liang Ye, Shi Min Zhao, Wei Xu
Software Mentions: 1
Published: over 10 years ago
10.1038/srep21841
DoOR 2.0 - Comprehensive Mapping of Drosophila melanogaster Odorant Responses
Cited by: 162
Author(s): Daniel Münch, C. Giovanni Galizia
Software Mentions: 1
Published: over 10 years ago
10.3389/fimmu.2018.03008
Heme Drives Susceptibility of Glomerular Endothelium to Complement Overactivation Due to Inefficient Upregulation of Heme Oxygenase-1
Cited by: 30
Author(s): Olivier May, Nicolas S. Merle, Anne Grünenwald, Viviane Gnemmi, Juliette Léon, Christine Payet, Tania Robe-Rybkine, Romain Paule, Florian Delguste, Simon C. Satchell, Peter W. Mathieson, Marc Hazzan, Éric Boulanger, Jordan D. Dimitrov, Véronique Frémeaux‐Bacchi, Marie Frimat, Lubka T. Roumenina
Software Mentions: 1
Published: over 7 years ago
10.1371/journal.pone.0170647
Increased Gamma Brainwave Amplitude Compared to Control in Three Different Meditation Traditions
Cited by: 99
Author(s): Claire Braboszcz, B. Rael Cahn, Jonathan Lévy, M. Fernàndez, Arnaud Delorme
Software Mentions: 1
Published: over 9 years ago
10.7717/peerj.4284
EU protected area network did not prevent a country wide population decline in a threatened grassland bird
Cited by: 25
Author(s): Joao Silva, Ricardo A. Correia, Hany Alonso, Ricardo C. Martins, Marcello D’Amico, Ana Delgado, Hugo L. Sampaio, Carlos Godinho, Francisco Moreira
Software Mentions: 1
Published: over 8 years ago
10.1371/journal.pone.0149035
Heterologous Expression Screens in Nicotiana benthamiana Identify a Candidate Effector of the Wheat Yellow Rust Pathogen that Associates with Processing Bodies
Cited by: 63
Author(s): Benjamin Pêtre, Diane G. O. Saunders, Jan Sklenář, Cécile Lorrain, Ksenia V. Krasileva, Joe Win, Sébastien Duplessis, Sophien Kamoun
Software Mentions: 1
Published: over 10 years ago
10.1038/srep23754
Inversions and adaptation to the plant toxin ouabain shape DNA sequence variation within and between chromosomal inversions of Drosophila subobscura.
Cited by: 13
Author(s): Cinta Pegueroles, Albert Ferrés‐Coy, Maria Martí-Solano, Charles F. Aquadro, Marta Pascual, Francesc Mestres
Software Mentions: 1
Published: over 10 years ago
10.1038/srep24320
Abattoir-based estimates of mycobacterial infections in Cameroon
Cited by: 32
Author(s): Nkongho Franklyn Egbe, Adrian Muwonge, Lucy Ndip, Robert F. Kelly, Melissa Sander, Vincent N. Tanya, Victor Ngu Ngwa, Ian Handel, Amanda Novak, R. Ngandalo, Stella Mazeri, K. L. Morgan, Anne E. Asuquo, Barend M. deC. Bronsvoort
Software Mentions: 1
Published: over 10 years ago
10.1101/2021.04.19.21255737
When can we stop wearing masks? Agent-based modeling to identify when vaccine coverage makes nonpharmaceutical interventions for reducing SARS-CoV-2 infections redundant in indoor gatherings
Cited by: 3
Author(s): Trevor S. Farthing, Cristina Lanzas
Software Mentions: 1
Published: over 5 years ago
10.3389/fendo.2021.664839
Decreased Expression of Ileal Thyroid Hormone Transporters in a Hypothyroid Patient: A Case Report
Cited by: 4
Author(s): Chae Won Chung, Eun Young Mo, Gyung Seo Jung, Yoo Hyung Kim, Sun Wook Cho, Do Joon Park, Jeong Mo Bae, Young Joo Park
Software Mentions: 1
Published: about 5 years ago
10.1371/journal.pone.0178274
Reprimo tissue-specific expression pattern is conserved between zebrafish and human
Cited by: 9
Author(s): Ricardo J. Figueroa, Gonzalo Carrasco-Aviño, Ignacio A. Wichmann, Martin Lange, Gareth I. Owen, Arndt F. Siekmann, Alejandro Corvalán, Juan C. Opazo, Julio D. Amigo
Software Mentions: 1
Published: about 9 years ago
10.1371/journal.pone.0237178
Entanglement rates and haulout abundance trends of Steller (Eumetopias jubatus) and California (Zalophus californianus) sea lions on the north coast of Washington state
Cited by: 6
Author(s): Elizabeth Marina Allyn, Jonathan J. Scordino
Software Mentions: 1
Published: almost 6 years ago
10.1371/journal.pone.0159518
High Hospitalization Rates in Survivors of Childhood Cancer: A Longitudinal Follow-Up Study Using Medical Record Linkage
Cited by: 23
Author(s): Elske Sieswerda, Anna Font-Gonzalez, Johannes B. Reitsma, Marcel G. W. Dijkgraaf, Richard C. Heinen, Monique W. M. Jaspers, Helena J. van der Pal, Flora E. van Leeuwen, Huib N. Caron, Ronald B. Geskus, Leontien C. M. Kremer
Software Mentions: 1
Published: about 10 years ago
10.7717/peerj.8079
Identification of novel genes associated with litter size of indigenous sheep population in Xinjiang, China using specific-locus amplified fragment sequencing technology
Cited by: 9
Author(s): Haijun Ma, Chao Fang, Lingling Liu, Qiong Wang, Jueken Aniwashi, Yiming Sulaiman, Kezierkailedi Abudilaheman, Wujun Liu
Software Mentions: 1
Published: over 6 years ago
10.1371/journal.pone.0053608
Taxonomic Classification of Bacterial 16S rRNA Genes Using Short Sequencing Reads: Evaluation of Effective Study Designs
Cited by: 266
Author(s): Orna Mizrahi-Man, Emily Davenport, Yoav Gilad
Software Mentions: 1
Published: over 13 years ago
10.1371/journal.pone.0232770
Colonization of Beauveria bassiana 08F04 in root-zone soil and its biocontrol of cereal cyst nematode (Heterodera filipjevi)
Cited by: 8
Author(s): Jie Zhang, Bo Fu, Qitong Lin, I. T. Riley, Shengli Ding, Linlin Chen, Jiangkuan Cui, Lirong Yang, Honglian Li
Software Mentions: 1
Published: over 6 years ago
10.1007/s00439-020-02168-w
AP1S1 missense mutations cause a congenital enteropathy via an epithelial barrier defect
Cited by: 23
Author(s): Katharina M C Klee, Andreas R. Janecke, Hasret Ayyıldız Civan, Štefan Rosipal, Peter Heinz‐Erian, Lukas A. Huber, Thomas Müller, Georg F. Vogel
Software Mentions: 1
Published: over 6 years ago
10.1038/srep28462
Cytochrome P450 metabolism of the post-lanosterol intermediates explains enigmas of cholesterol synthesis
Cited by: 31
Author(s): Jure Ačimovič, Sandeep Goyal, Rok Košir, Marko Goličnik, Martina Perše, Aleš Belič, Žiga Urlep, F. Peter Guengerich, Damjana Rozman
Software Mentions: 1
Published: about 10 years ago
10.1371/journal.pone.0218943
Stable isotope and dental caries data reveal abrupt changes in subsistence economy in ancient China in response to global climate change
Cited by: 27
Author(s): Christina Cheung, Hua Zhang, Joseph C. Hepburn, Dongya Yang, Michael P. Richards
Software Mentions: 1
Published: about 7 years ago
10.3390/brainsci10120914
Amino Acid Levels as Potential Biomarker of Elderly Patients with Dementia
Cited by: 6
Author(s): Edyta Socha, Piotr Kośliński, Marcin Koba, Katarzyna Mądra-Gackowska, Kornelia Kędziora–Kornatowska, Marcin Gackowski, Emilia Daghir-Wojtkowiak
Software Mentions: 1
Published: over 5 years ago
10.1038/srep29514
The HSA21 gene EURL/C21ORF91 controls neurogenesis within the cerebral cortex and is implicated in the pathogenesis of Down Syndrome
Cited by: 21
Author(s): Shan Shan Li, Zhengdong Qu, Matilda Haas, Linh Ngo, You Jeong Heo, Hyo Jung Kang, Joanne M. Britto, Hayley Daniella Cullen, Hannah K. Vanyai, Seong‐Seng Tan, Tailoi Chan‐Ling, Jenny M. Gunnersen, Julian Ik‐Tsen Heng
Software Mentions: 1
Published: about 10 years ago
10.1038/srep29598
Human Thanatomicrobiome Succession and Time Since Death
Cited by: 116
Author(s): Gulnaz T. Javan, Sheree J. Finley, İsmail Can, Jeremy E. Wilkinson, John D. Hanson, Aaron M. Tarone
Software Mentions: 1
Published: about 10 years ago
10.3389/fpls.2021.707839
QTL Map of Early- and Late-Stage Perennial Regrowth in Zea diploperennis
Cited by: 4
Author(s): Kyle W. Swentowsky, Harrison S. Bell, David M. Wills, R. Kelly Dawe
Software Mentions: 1
Published: almost 5 years ago
10.1186/s12889-020-10066-z
Trends in national and subnational wealth related inequalities in use of maternal health care services in Nepal: an analysis using demographic and health surveys (2001–2016)
Cited by: 17
Author(s): Vishnu Prasad Sapkota, Umesh Prasad Bhusal, Kiran Acharya
Software Mentions: 1
Published: over 5 years ago
10.1371/journal.pone.0081663
Modulation of Malaria Infection in Anopheles gambiae Mosquitoes Exposed to Natural Midgut Bacteria
Cited by: 55
Author(s): Majoline T. Tchioffo, Anne Boissière, Thomas S. Churcher, Luc Abate, Geoffrey Gimonneau, Sandrine E. Nsango, Parfait Awono-Ambene, Richard Christen, Antoine Berry, Isabelle Morlais
Software Mentions: 1
Published: over 12 years ago
10.1038/srep31125
Characterization of new RNA polymerase III and RNA polymerase II transcriptional promoters in the Bovine Leukemia Virus genome
Cited by: 18
Author(s): Benoît Van Driessche, Anthony Rodari, Nadège Delacourt, Sylvain Fauquenoy, Caroline Vanhulle, Arsène Burny, Olivier Rohr, Carine Van Lint
Software Mentions: 1
Published: almost 10 years ago
10.1371/journal.pone.0139663
Genomic Landscape of Primary Mediastinal B-Cell Lymphoma Cell Lines
Cited by: 17
Author(s): Haiping Dai, Stefan Ehrentraut, Stefan Nagel, Sonja Eberth, Claudia Pommerenke, Wilhelm G. Dirks, Robert Geffers, Srilaxmi Kalavalapalli, Maren Kaufmann, Corrina Meyer, Silke Faehnrich, Suning Chen, Hans G. Drexler, Roderick A.F. MacLeod
Software Mentions: 1
Published: over 10 years ago
10.3389/fcimb.2020.598938
The Lung Microbiome of Three Young Brazilian Patients With Cystic Fibrosis Colonized by Fungi
Cited by: 7
Author(s): Otávio Guilherme Gonçalves de Almeida, Carolina Paulino da Costa Capizzani, Ludmilla Tonani, Patrícia Helena Grizante Barião, Anderson Ferreira da Cunha, Elaine Cristina Pereira De Martinis, Lídia Alice Gomes Monteiro Marin Torres, Márcia Regina von Zeska Kress
Software Mentions: 1
Published: almost 6 years ago
10.3389/fimmu.2020.01174
Extracellular Vesicles Derived From Trichinella spiralis Muscle Larvae Ameliorate TNBS-Induced Colitis in Mice
Cited by: 39
Author(s): Yong Yang, Lei Liu, Xiaolei Liu, Yuanyuan Zhang, Hailian Shi, Wan‐Zhong Jia, Hongfei Zhu, Hong Peng Jia, Mingyuan Liu, Xue Bai
Software Mentions: 1
Published: about 6 years ago
10.3390/brainsci11020260
Chronic Mild Unpredictable Stress and High-Fat Diet Given during Adolescence Impact Both Cognitive and Noncognitive Behaviors in Young Adult Mice
Cited by: 7
Author(s): Stephen L.P. Lippi
Software Mentions: 1
Published: over 5 years ago
10.1371/journal.pone.0089428
Increased Prolactin Levels Are Associated with Impaired Processing Speed in Subjects with Early Psychosis
Cited by: 32
Author(s): Itziar Montalvo, Alfonso Gutiérrez-Zotes, Marta Creus, Rosa Monseny, Laura Ortega, J. Franch, Stephen M. Lawrie, Rebecca M. Reynolds, Elisabet Vilella, Javier Labad
Software Mentions: 1
Published: over 12 years ago
10.3390/nu12020278
Gut Microbiota Profile of Obese Diabetic Women Submitted to Roux-en-Y Gastric Bypass and Its Association with Food Intake and Postoperative Diabetes Remission
Cited by: 44
Author(s): Karina Al Assal, Edi Prifti, Eugeni Belda, Priscila Sala, Karine Clément, Maria-Carlota Dao, Joël Doré, Florence Levenez, Carla Romano Taddei, Danielle Cristina Fonseca, Ilanna Marques Gomes da Rocha, Bianca Depieri Balmant, Andrew Maltez Thomas, Marco Aurélio Santo, Emmanuel Dias-Neto, João Carlos Setúbal, Jean-Daniel Zucker, G. Belarmino, Raquel Susana Torrinhas, Dan Linetzky Waitzberg
Software Mentions: 1
Published: over 6 years ago
10.3389/fmicb.2021.684092
Complete Genome Sequence of Xylella taiwanensis and Comparative Analysis of Virulence Gene Content With Xylella fastidiosa
Cited by: 6
Author(s): Ling-Wei Weng, Yuchen Lin, Chiou-Chu Su, Cheng Tung Huang, Shu-Ting Cho, Aiping Chen, Shu‐Jen Chou, Chang‐Her Tsai, Chih-Horng Kuo
Software Mentions: 1
Published: over 5 years ago
10.1371/journal.pone.0154457
Complementary Hand Responses Occur in Both Peri- and Extrapersonal Space
Cited by: 3
Author(s): Tim Faber, Michiel van Elk, Kai J. Jonas
Software Mentions: 1
Published: over 10 years ago
10.1038/srep33735
Next Generation Sequencing of Pooled Samples: Guideline for Variants’ Filtering
Cited by: 80
Author(s): Santosh Anand, Eleonora Mangano, Nadia Barizzone, Roberta Bordoni, Melissa Sorosina, Ferdinando Clarelli, Lucia Corrado, Filippo Martinelli Boneschi, Sandra D’Alfonso, Gianluca De Bellis
Software Mentions: 1
Published: almost 10 years ago
10.1371/journal.pone.0237818
Genome-wide association study for mammary structure in Canadian Angus cows
Cited by: 7
Author(s): Kajal Devani, Graham Plastow, Karin Orsel, Tiago S. Valente
Software Mentions: 1
Published: almost 6 years ago
10.1038/srep34372
Formal nomenclature and description of cryptic species of the Encyrtus sasakii complex (Hymenoptera: Encyrtidae)
Cited by: 13
Author(s): Ying Wang, Qianxiong Zhou, Huijie Qiao, Aibing Zhang, Fang Yu, Xubo Wang, Chao‐Dong Zhu, Yanzhou Zhang
Software Mentions: 1
Published: almost 10 years ago
10.1038/srep34588
Co-acclimation of bacterial communities under stresses of hydrocarbons with different structures
Cited by: 41
Author(s): Hui Wang, Bin Wang, Wenwen Dong, Xiaoke Hu
Software Mentions: 1
Published: almost 10 years ago
10.1038/srep35826
Two flagellar BAR domain proteins in Trypanosoma brucei with stage-specific regulation
Cited by: 2
Author(s): Zdeňka Čičová, Mario Dejung, Tomáš Skalický, Nicole Eisenhuth, Steffen Hanselmann, Brooke Morriswood, Luísa M. Figueiredo, Falk Butter, Christian J. Janzen
Software Mentions: 1
Published: almost 10 years ago
10.1523/ENEURO.0300-19.2019
Characterization of Auditory and Binaural Spatial Hearing in a Fragile X Syndrome Mouse Model
Cited by: 11
Author(s): Elizabeth A. McCullagh, Shani Poleg, Nathaniel T. Greene, Molly M. Huntsman, Daniel J. Tollin, Achim Klug
Software Mentions: 1
Published: over 6 years ago
10.1038/srep35810
LPA receptor activity is basal specific and coincident with early pregnancy and involution during mammary gland postnatal development
Cited by: 7
Author(s): Deanna Acosta, Susmita Bagchi, Pilib Ó Broin, Daniel P. Hollern, Silvia E. Racedo, Bernice E. Morrow, Rani S. Sellers, John M. Greally, Aaron Golden, Eran R. Andrechek, Teresa L. Wood, Cristina Montagna
Software Mentions: 1
Published: almost 10 years ago
10.3390/brainsci11060704
The Association between Difficulties with Speech Fluency and Language Skills in a National Age Cohort of Children with Down Syndrome
Cited by: 3
Author(s): K Naess, Egil Nygaard, Hilde Hofslundsengen, J. Scott Yaruss
Software Mentions: 1
Published: about 5 years ago
10.1038/srep36305
Proteomic Characterization of the World Trade Center dust-activated mdig and c-myc signaling circuit linked to multiple myeloma
Cited by: 18
Author(s): Kai Wu, Lingzhi Li, Chitra Thakur, Yongju Lu, Xiangmin Zhang, Zhengping Yi, Fei Chen
Software Mentions: 1
Published: almost 10 years ago
10.1371/journal.pone.0249739
The effects of maturity matched and un-matched opposition on physical performance and spatial exploration behavior during youth basketball matches
Cited by: 7
Author(s): Jorge Arede, Sean P. Cumming, David M. Johnson, Nuno Leite
Software Mentions: 1
Published: over 5 years ago
10.1007/s11682-016-9626-2
Associations between genetic risk, functional brain network organization and neuroticism
Cited by: 15
Author(s): Michelle N. Servaas, Linda Geerligs, Jojanneke A. Bastiaansen, Remco Renken, Jan-Bernard C Marsman, Ilja M. Nolte, Johan Ormel, André Alemán, Harriëtte Riese
Software Mentions: 1
Published: almost 10 years ago
10.1038/srep37343
Main Effects of Diagnoses, Brain Regions, and their Interaction Effects for Cerebral Metabolites in Bipolar and Unipolar Depressive Disorders
Cited by: 8
Author(s): Hao Tan, Hui Li, Chen-Feng Liu, Jitian Guan, Xiaotong Guo, Canhong Wen, Shao-Min Ou, Yin-Nan Zhang, Jie Zhang, Chongtao Xu, Zhiwei Shen, Renhua Wu, Xueqin Wang
Software Mentions: 1
Published: over 9 years ago
10.1371/journal.pone.0195433
Effects of different slipping methods on the mortality of sardine, Sardina pilchardus, after purse-seine capture off the Portuguese Southern coast (Algarve)
Cited by: 16
Author(s): Ana Marçalo, Pedro M. Guerreiro, Luís Bentes, Mafalda Rangel, Pedro Monteiro, Frederico Oliveira, Carlos M.L. Afonso, Pedro Pousão-Ferreira, Hugues P. Benoît, Mike Breen, Karim Erzini, Jorge M. S. Gonçalves
Software Mentions: 1
Published: about 8 years ago
10.1371/journal.pone.0188085
Steps to achieve quantitative measurements of microRNA using two step droplet digital PCR
Cited by: 26
Author(s): Elizabeth Stein, David L. Duewer, Natalia Farkas, Erica L. Romsos, Lili Wang, Kenneth D. Cole
Software Mentions: 1
Published: almost 9 years ago
10.1038/srep38309
Deep sequencing of the 16S ribosomal RNA of the neonatal oral microbiome: a comparison of breast-fed and formula-fed infants
Cited by: 50
Author(s): Saad S. Al-Shehri, Emma L. Sweeney, David Cowley, Helen Liley, Purnika Damindi Ranasinghe, Bruce G. Charles, P. Nicholas Shaw, Dimitrios Vagenas, John A. Duley, Christine L. Knox
Software Mentions: 1
Published: over 9 years ago
10.1186/s12870-019-2142-y
The impact of sample selection strategies on genetic diversity and representativeness in germplasm bank collections
Cited by: 11
Author(s): Jorge Franco, José Crossa, Jiafa Chen, Sarah Hearne
Software Mentions: 1
Published: over 6 years ago
10.1038/srep38554
Salt tolerance during germination and seedling growth of wild wheat Aegilops tauschii and its impact on the species range expansion
Cited by: 20
Author(s): Daisuke Sugiyama, Shigeo Takumi, Yoshihiro Matsuoka
Software Mentions: 1
Published: over 9 years ago
10.3390/nu13082543
One-Week High-Dose β-Alanine Loading Improves World Tour Cyclists’ Time-Trial Performance
Cited by: 1
Author(s): Vicente Ávila-Gandía, Antonio Torregrosa-García, Silvia Pérez-Piñero, Raquel Ortolano, María Salud Abellán-Ruiz, Francisco Javier López-Román
Software Mentions: 1
Published: about 5 years ago
10.1038/srep39459
Preliminary effectiveness of breast cancer screening among 1.22 million Chinese females and different cancer patterns between urban and rural women
Cited by: 26
Author(s): Yubei Huang, Hong Dai, Fengju Song, Haixin Li, Ye Yan, Zhenhua Yang, Zhaoxiang Ye, Sheng Zhang, Hong Liu, Yimei Cao, Li Xiong, Yahong Luo, Tie Pan, Xuelei Ma, Jie Wang, Xiaojing Song, Ling Leng, Yeping Zhang, Jie Sun, Jialin Wang, Hengmin Ma, Lingzhi Kong, Zhenglong Lei, Yaogang Wang, Peishan Wang, Jiali Han, Xishan Hao, Kexin Chen
Software Mentions: 1
Published: over 9 years ago
10.1038/srep39464
Mice lacking WRB reveal differential biogenesis requirements of tail-anchored proteins in vivo
Cited by: 35
Author(s): Jhon Rivera‐Monroy, Lena Musiol, Kirsten Unthan-Fechner, Ákos Farkas, Anne Clancy, Javier Coy-Vergara, Uri Weill, Sarah Gockel, Sunny Jui-Shan Lin, David P. Corey, Tobias Kohl, Philipp Ströbel, Maya Schuldiner, Blanche Schwappach, Fabio Vilardi
Software Mentions: 1
Published: over 9 years ago
10.1038/srep39321
Paclobutrazol induces tolerance in tomato to deficit irrigation through diversified effects on plant morphology, physiology and metabolism
Cited by: 45
Author(s): Sikander Pal, Jiangsan Zhao, Asif Ali Khan, Narendra Singh Yadav, Albert Batushansky, Simon Barak, Boris Rewald, Aaron Fait, Naftali Lazarovitch, Shimon Rachmilevitch
Software Mentions: 1
Published: over 9 years ago
10.3389/fgene.2021.625246
System-Level Analysis of Alzheimer’s Disease Prioritizes Candidate Genes for Neurodegeneration
Cited by: 6
Author(s): Jeffrey L. Brabec, Montana Kay Lara, Anna L. Tyler, James Mahoney
Software Mentions: 1
Published: over 5 years ago
10.1038/srep40453
Folivory elicits a strong defense reaction in Catharanthus roseus: metabolomic and transcriptomic analyses reveal distinct local and systemic responses
Cited by: 34
Author(s): Thomas Dugé de Bernonville, Inês Carqueijeiro, Arnaud Lanoue, Florent Lafontaine, Paloma Sánchez-Bel, Franziska Liesecke, Karine Musset, Audrey Oudin, Gaëlle Glévarec, Olivier Pichon, Sébastien Besseau, Marc Clastre, Benoit St-Pierre, Vı́ctor Flors, Stéphane Maury, Elisabeth Huguet, Sarah E. O’Connor, Vincent Courdavault
Software Mentions: 1
Published: over 9 years ago
10.1371/journal.pone.0137640
Deciphering Seed Sequence Based Off-Target Effects in a Large-Scale RNAi Reporter Screen for E-Cadherin Expression
Cited by: 8
Author(s): Robert A. Adams, Barbara Nicke, Hans‐Dieter Pohlenz, Florian Sohler
Software Mentions: 1
Published: almost 11 years ago
10.7717/peerj.1270
Improved estimates of age, growth and reproduction for the regionally endemic Galapagos sailfin grouper<i>Mycteroperca olfax</i>(Jenyns, 1840)
Cited by: 13
Author(s): Paolo Usseglio, Alan M. Friedlander, Edward E. DeMartini, Anna Schuhbauer, Eva Schemmel, Pelayo Salinas de León
Software Mentions: 1
Published: almost 11 years ago
10.1371/journal.pone.0069202
Genome-Wide Association Mapping for Identification of Quantitative Trait Loci for Rectal Temperature during Heat Stress in Holstein Cattle
Cited by: 86
Author(s): Serdal Dikmen, J.B. Cole, D.J. Null, Peter J. Hansen
Software Mentions: 1
Published: about 13 years ago
10.1371/journal.pone.0155143
Impaired Bile Acid Homeostasis in Children with Severe Acute Malnutrition
Cited by: 18
Author(s): Ling Zhang, Wieger Voskuijl, Marialena Mouzaki, Albert K. Groen, J. J. Alexander, Céline Bourdon, Alice Wang, Christian J. Versloot, Valeria Di Giovanni, Ronald J. A. Wanders, Robert Bandsma
Software Mentions: 1
Published: over 10 years ago
10.1038/srep40365
A Genome-Wide Association Study Identifies Genetic Variants Associated with Mathematics Ability
Cited by: 22
Author(s): Huan Chen, Xiao-Hong Gu, Yue Zhou, Zhen Ge, Bin Wang, Wai Ting Siok, Guoqing Wang, Michael S.Y. Huen, Yuyang Jiang, Li-Hai Tan, Yimin Sun
Software Mentions: 1
Published: over 9 years ago
10.1371/journal.pone.0192117
The number of repeated observations needed to estimate the habitual physical activity of an individual to a given level of precision
Cited by: 25
Author(s): Patrick Bergman
Software Mentions: 1
Published: over 8 years ago
10.1371/journal.pone.0209431
Evaluating the bio-economic performance of a Callo de hacha (Atrina maura, Atrina tuberculosa &amp; Pinna rugosa) fishery restoration plan in La Paz, Mexico
Cited by: 4
Author(s): Juliano Palacios‐Abrantes, Juliana Herrera-Correal, Salvador Estrada, Jacy Brunkow, Renato Molina
Software Mentions: 1
Published: over 7 years ago
10.1523/ENEURO.0009-19.2019
Critical Analysis of Particle Detection Artifacts in Synaptosome Flow Cytometry
Cited by: 13
Author(s): Benjamin D. Hobson, Peter A. Sims
Software Mentions: 1
Published: over 7 years ago
10.1186/s12937-015-0119-8
Body adiposity index performance in estimating body fat in a sample of severely obese Brazilian patients
Cited by: 16
Author(s): G. Belarmino, L.M. Horie, Priscila Sala, Raquel Susana Torrinhas, Steven B. Heymsfield, Dan Linetzky Waitzberg
Software Mentions: 1
Published: over 10 years ago
10.3389/fpls.2020.609600
Regulation of Exocyst Function in Pollen Tube Growth by Phosphorylation of Exocyst Subunit EXO70C2
Cited by: 4
Author(s): Antonietta Saccomanno, Martin Potocký, Přemysl Pejchar, Michal Hála, Hiromasa Shikata, Claus Schwechheimer, Viktor Žárský
Software Mentions: 1
Published: over 5 years ago
10.1186/s12974-019-1424-5
The agonistic TSPO ligand XBD173 attenuates the glial response thereby protecting inner retinal neurons in a murine model of retinal ischemia
Cited by: 30
Author(s): Kristin Mages, Felix Graßmann, Herbert Jägle, Rainer Rupprecht, Bernhard H. F. Weber, Stefanie M. Hauck, Antje Grosche
Software Mentions: 1
Published: over 7 years ago
10.1038/srep45131
Dissociable diffusion MRI patterns of white matter microstructure and connectivity in Alzheimer’s disease spectrum
Cited by: 41
Author(s): Nhat Trung Doan, Andreas Engvig, Karin Persson, Dag Alnæs, Tobias Kaufmann, Jaroslav Rokicki, Aldo Córdova‐Palomera, Torgeir Moberget, Anne Brækhus, Maria Lage Barca, Knut Engedal, Ole A. Andreassen, Geir Selbæk, Lars T. Westlye
Software Mentions: 1
Published: over 9 years ago
10.3389/fpls.2020.00012
The Genetic Architecture for Phenotypic Plasticity of the Rice Grain Ionome
Cited by: 18
Author(s): Yan‐Xi Tan, Jin Zhou, Jiurong Wang, Liang Sun
Software Mentions: 1
Published: over 6 years ago
10.3389/fimmu.2020.608696
Distinguishing Sepsis From Infection by Neutrophil Dysfunction: A Promising Role of CXCR2 Surface Level
Cited by: 14
Author(s): Chutima Seree-aphinan, Polathep Vichitkunakorn, Raphatphorn Navakanitworakul, Bodin Khwannimit
Software Mentions: 1
Published: over 5 years ago
10.3389/fimmu.2021.600979
Tenascin-C Deficiency Is Associated With Reduced Bacterial Outgrowth During Klebsiella pneumoniae-Evoked Pneumosepsis in Mice
Cited by: 9
Author(s): Mariska T. Meijer, Alex F. de Vos, Brendon P. Scicluna, Joris J T H Roelofs, Cherine Abou-Fayçal, Gertraud Orend, Fabrice Uhel, Tom van der Poll
Software Mentions: 1
Published: over 5 years ago
10.1038/srep45496
Cortical laminar tau deposits and activated astrocytes in Alzheimer’s disease visualised by 3H-THK5117 and 3H-deprenyl autoradiography
Cited by: 39
Author(s): Laëtitia Lemoine, Laure Saint‐Aubert, Inger Nennesmo, Per‐Göran Gillberg, Agneta Nordberg
Software Mentions: 1
Published: over 9 years ago
10.1371/journal.pone.0192277
Distribution of triclosan-resistant genes in major pathogenic microorganisms revealed by metagenome and genome-wide analysis
Cited by: 14
Author(s): Raees Khan, Nazish Roy, Kihyuck Choi, Seon-Woo Lee
Software Mentions: 1
Published: over 8 years ago
10.7717/peerj.5007
Evaluating the utility of the female-specific mitochondrialf-orfgene for population genetic, phylogeographic and systematic studies in freshwater mussels (Bivalvia: Unionida)
Cited by: 7
Author(s): Brent M. Robicheau, Emily Chase, Walter R. Hoeh, John L. Harris, Donald T. Stewart, Sophie Breton
Software Mentions: 1
Published: about 8 years ago
10.1038/srep46267
Using energy budgets to combine ecology and toxicology in a mammalian sentinel species
Cited by: 16
Author(s): Jean‐Pierre Desforges, Christian Sonne, Runé Dietz
Software Mentions: 1
Published: over 9 years ago
10.1371/journal.pone.0177536
The Global Fund in China: Multidrug-resistant tuberculosis nationwide programmatic scale-up and challenges to transition to full country ownership
Cited by: 17
Author(s): Lixia Wang, Renzhong Li, Cheng Xu, Hui Zhang, Yunzhou Ruan, Ming-Ting Chen, Dongmei Wang, Emilio Dirlikov, Xin Du, Jian Zhao, Yanlin Zhao, Sheng Fen Wang, Yuhong Liu, Liang Li, Dennis Falzon, Yiyuan Sun, Yu Wang, Bernhard Schwärtlander, Fabio Scano
Software Mentions: 1
Published: about 9 years ago
10.1371/journal.pone.0155046
A European Mitochondrial Haplotype Identified in Ancient Phoenician Remains from Carthage, North Africa
Cited by: 23
Author(s): Elizabeth Matisoo-Smith, Anna L. Gosling, James Boocock, Olga Kardailsky, Yara Kurumilian, Sihem Roudesli‐Chebbi, Leila Badre, Jean-Paul Morel, Leïla Ladjimi Sebaï, Pierre Zalloua
Software Mentions: 1
Published: about 10 years ago