cran: ggplot2 | Projects | Ecosyste.ms: Papers

10.1186/s12873-021-00495-3

Effects of the COVID-19 pandemic on trauma-related emergency medical service calls: a retrospective cohort study
Cited by: 7
Author(s): Michael Azbel, Mikko Heinänen, Mitja Lääperi, Markku Kuisma
Software Mentions: 1
Published: almost 5 years ago

10.1002/cam4.458

Single‐fraction radiation therapy in patients with metastatic Merkel cell carcinoma
Cited by: 54
Author(s): Jayasri G. Iyer, Upendra Parvathaneni, Ted Gooley, Natalie J. Miller, Elan Markowitz, Astrid Blom, Christopher W. Lewis, Ryan Doumani, Kaushik Parvathaneni, Austin Anderson, Amy Bestick, Jay Liao, Gabrielle Kane, Shailender Bhatia, Kelly G. Paulson, Paul Nghiem
Software Mentions: 1
Published: about 11 years ago

10.1002/cam4.3829

Integrative analysis regarding the correlation between GAS2 family genes and human glioma prognosis
Cited by: 5
Author(s): Chunyan Zhao, Nan Zhang, Xiaoteng Cui, Xinxin Zhang, Yuanyuan Ren, Chao Su, Jian‐Qing He, Wei Zhang, Xiaoming Sun, Jie Yang, Xingjie Gao
Software Mentions: 1
Published: over 5 years ago

10.1186/s13048-019-0518-0

Low BCL7A expression predicts poor prognosis in ovarian cancer
Cited by: 14
Author(s): Ziqian Sun, Liang Sun, Miao He, Ying Pang, Zhaoying Yang, Junrong Wang
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pgen.1008432

UMAP reveals cryptic population structure and phenotype heterogeneity in large genomic cohorts
Cited by: 151
Author(s): Alex Diaz-Papkovich, Luke Anderson-Trocmé, Chief Ben-Eghan, Simon Gravel
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pgen.1007886

Narya, a RING finger domain-containing protein, is required for meiotic DNA double-strand break formation and crossover maturation in Drosophila melanogaster
Cited by: 8
Author(s): Cathleen M. Lake, Rachel J. Nielsen, Amanda M. Bonner, Salam Eche, Sanese Kania White-Brown, Kim S. McKim, R. Scott Hawley
Software Mentions: 1
Published: over 7 years ago

10.7554/eLife.32822

Sci-Hub provides access to nearly all scholarly literature
Cited by: 89
Author(s): Daniel S. Himmelstein, Ariel Rodriguez Romero, Jacob Levernier, Thomas A. Munro, Stephen Reid McLaughlin, Bastian Greshake Tzovaras, Casey S. Greene
Software Mentions: 1
Published: over 8 years ago

10.1128/mBio.02716-18

The Polar Organizing Protein PopZ Is Fundamental for Proper Cell Division and Segregation of Cellular Content in Magnetospirillum gryphiswaldense
Cited by: 16
Author(s): Daniel Pfeiffer, Mauricio Toro-Nahuelpan, Marc Bramkamp, Jürgen M. Plitzko, Dirk Schüler
Software Mentions: 1
Published: about 7 years ago

10.1186/s12862-016-0837-3

PhyInformR: phylogenetic experimental design and phylogenomic data exploration in R
Cited by: 38
Author(s): Alex Dornburg, Jeffrey Nicholas Fisk, Jules A. Tamagnan, Jeffrey P. Townsend
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pgen.1007512

Discovery of a dual protease mechanism that promotes DNA damage checkpoint recovery
Cited by: 16
Author(s): Peter E. Burby, Zackary W. Simmons, Jeremy W. Schroeder, Lyle A. Simmons
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pgen.1006908

The nucleoid occlusion factor Noc controls DNA replication initiation in Staphylococcus aureus
Cited by: 40
Author(s): Ting Pang, Xindan Wang, Hoong Chuin Lim, Thomas G. Bernhardt, David Z. Rudner
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pgen.1008315

Mutations in ARL2BP, a protein required for ciliary microtubule structure, cause syndromic male infertility in humans and mice
Cited by: 18
Author(s): Abigail R. Moye, Nicola Bedoni, Jessica G. Cunningham, Urikhan Sanzhaeva, Eric S. Tucker, Peter H. Mathers, Virginie G. Peter, Mathieu Quinodoz, Liliana P Paris, Luisa Coutinho Santos, Pedro Camacho, Madeleine G. Purcell, Abbie C. Winkelmann, James A. Foster, Elena N. Pugacheva, Carlo Rivolta, Visvanathan Ramamurthy
Software Mentions: 1
Published: almost 7 years ago

10.1128/mBio.01224-19

Investigation of Genetic Susceptibility to Blastomycosis Reveals Interleukin-6 as a Potential Susceptibility Locus
Cited by: 30
Author(s): Richard M. Merkhofer, Mary O’Neill, Donny Xiong, Nydiaris Hernández-Santos, Hannah E. Dobson, J. Scott Fites, Abigail C. Shockey, Marcel Wuethrich, Caitlin S. Pepperell, Bruce S. Klein
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pgen.1000928

Genome-Wide Association Study of Lp-PLA2 Activity and Mass in the Framingham Heart Study
Cited by: 71
Author(s): Sunil Suchindran, D Rivedal, John R. Guyton, Tom Milledge, Xiaoyi Gao, Ashlee M. Benjamin, Jennifer Rowell, Geoffrey S. Ginsburg, Jeanette McCarthy
Software Mentions: 1
Published: about 16 years ago

10.1186/s12862-017-1062-4

Co-founding ant queens prevent disease by performing prophylactic undertaking behaviour
Cited by: 8
Author(s): Christopher D. Pull, Sylvia Cremer
Software Mentions: 1
Published: over 8 years ago

10.1186/s12862-017-1022-z

Drift, selection, or migration? Processes affecting genetic differentiation and variation along a latitudinal gradient in an amphibian
Cited by: 27
Author(s): María Cortázar-Chinarro, Ella Zoe Lattenkamp, Yvonne Meyer‐Lucht, Émilien Luquet, Anssi Laurila, Jacob Höglund
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pgen.1005602

Genomic Insights into the Ancestry and Demographic History of South America
Cited by: 186
Author(s): Julian R. Homburger, Andrés Moreno‐Estrada, Christopher R. Gignoux, Dominic Nelson, Elena Sánchez, Patricia A. Ortiz-Tello, Bernardo A. Pons-Estel, Eduardo Acevedo‐Vásquez, Pedro Miranda, Carl D. Langefeld, Simon Gravel, Marta E. Alarcón‐Riquelme, Carlos D. Bustamante
Software Mentions: 1
Published: over 10 years ago

10.1128/mBio.01678-19

A Protein Antagonist of Activation-Induced Cytidine Deaminase Encoded by a Complex Mouse Retrovirus
Cited by: 8
Author(s): Gurvani B. Singh, Hyewon Byun, Almas F. Ali, Frank Medina, Dennis Wylie, Haridha Shivram, Andrea K. Nash, Mary M. Lozano, Jaquelin P. Dudley
Software Mentions: 1
Published: almost 7 years ago

10.1002/cam4.2150

Long noncoding RNA RP11‐547D24.1 regulates proliferation and migration in papillary thyroid carcinoma: Identification and validation of a novel long noncoding RNA through integrated analysis of TCGA database
Cited by: 18
Author(s): Kai Guo, Lili Chen, Yunjun Wang, Kai Qian, Xiaoke Zheng, Wenyu Sun, Tuanqi Sun, Yi Wu, Zhuoying Wang
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pgen.1004423

Phenotypic Dissection of Bone Mineral Density Reveals Skeletal Site Specificity and Facilitates the Identification of Novel Loci in the Genetic Regulation of Bone Mass Attainment
Cited by: 126
Author(s): John P. Kemp, Carolina Medina‐Gomez, Karol Estrada, Beaté St Pourcain, Denise H.M. Heppe, Nicole M. Warrington, Ling Oei, Susan M. Ring, Claudia J. Kruithof, Nicholas J. Timpson, Lisa E. Wolber, Sjur Reppe, Kaare M. Gautvik, Elin Grundberg, Bing Ge, Bram C. J. van der Eerden, Jeroen van de Peppel, Matthew A. Hibbs, Cheryl Ackert‐Bicknell, Kwangbom Choi, Daniel L. Koller, Michael J. Econs, Frances Williams, Tatiana Foroud, M. Carola Zillikens, Claes Ohlsson, Albert Hofman, André G. Uitterlinden, George Davey Smith, Vincent W. V. Jaddoe, Jonathan H Tobias, Fernando Rivadeneira, David M. Evans
Software Mentions: 1
Published: almost 12 years ago

10.1128/mBio.01516-19

Hydrodynamic Shape Changes Underpin Nuclear Rerouting in Branched Hyphae of an Oomycete Pathogen
Cited by: 5
Author(s): Édouard Evangelisti, Liron Shenhav, T. S. Yunusov, Marie Le Naour—Vernet, Philipp Rink, Sebastián Schornack
Software Mentions: 1
Published: over 6 years ago

10.1128/mBio.02321-19

Identification of Key Determinants of Staphylococcus aureus Vaginal Colonization
Cited by: 28
Author(s): Liwen Deng, Katrin Schilcher, Lindsey R. Burcham, Jakub Kwieciński, Paige Johnson, Steven R. Head, David E. Heinrichs, Alexander R. Horswill, Kelly S. Doran
Software Mentions: 1
Published: over 6 years ago

10.1186/s12862-019-1438-8

Purifying selection does not drive signatures of convergent local adaptation of lodgepole pine and interior spruce
Cited by: 1
Author(s): Mi Lu, Kathryn A. Hodgins, Jon C. Degner, Sam Yeaman
Software Mentions: 1
Published: about 7 years ago

10.1186/s12862-018-1314-y

Two’s company, three’s a crowd: co-occurring pollinators and parasite species in Breynia oblongifolia (Phyllanthaceae)
Cited by: 6
Author(s): Jonathan T. D. Finch, Sally A. Power, Justin A. Welbergen, James M. Cook
Software Mentions: 1
Published: over 7 years ago

10.1128/mBio.03243-19

Influenza Virus Infection Induces a Narrow Antibody Response in Children but a Broad Recall Response in Adults
Cited by: 46
Author(s): Philip Meade, Guillermina Kuan, Shirin Strohmeier, Hannah E. Maier, Fatima Amanat, Ángel Balmaseda, Kimihito Ito, Ericka Kirkpatrick, Andres Javier, Lionel Gresh, Raffael Nachbagauer, Aubree Gordon, Florian Krammer
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pcbi.1008119

Ten simple rules to increase computational skills among biologists with Code Clubs
Cited by: 5
Author(s): Ada K. Hagan, Nicholas A. Lesniak, Marcy J. Balunas, Lucas Bishop, William L. Close, Matthew K. Doherty, Amanda G. Elmore, Kaitlin J. Flynn, Geoffrey D. Hannigan, Charlie C. Koumpouras, Matthew L. Jenior, Ariangela J. Kozik, Kathryn McBride, Samara Rifkin, Joshua M. A. Stough, Kelly L Sovacool, Marc A. Sze, Sarah Tomkovich, Begüm D. Topçuoğlu, Patrick D. Schloss
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12862-018-1249-3

Three new Diplozoidae mitogenomes expose unusual compositional biases within the Monogenea class: implications for phylogenetic studies
Cited by: 25
Author(s): Dong Zhang, Hong Zou, Shan Wu, Ming Li, Ivan Jakovlić, Jin Zhang, Rong Chen, Wen X. Li, Gui T. Wang
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pcbi.1006468

Wrangling distributed computing for high-throughput environmental science: An introduction to HTCondor
Cited by: 10
Author(s): Richard A. Erickson, Michael N. Fienen, S. Grace McCalla, Emily L. Weiser, Melvin L. Bower, Jonathan M. Knudson, Greg Thain
Software Mentions: 1
Published: over 7 years ago

10.1186/s12866-021-02204-3

Deviations in the gut microbiota of neonates affected by maternal group B Streptococcus colonization
Cited by: 4
Author(s): Yuefeng Li, Xue-lei Gong, Su-xiang Chen, Kejian Wang, Yan-hua Jiang
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pcbi.1003638

Are Current Atomistic Force Fields Accurate Enough to Study Proteins in Crowded Environments?
Cited by: 117
Author(s): Dražen Petrov, Bojan Žagrović
Software Mentions: 1
Published: about 12 years ago

10.1002/cam4.1064

Elevated glypican-1 expression is associated with an unfavorable prognosis in pancreatic ductal adenocarcinoma
Cited by: 83
Author(s): Haizhen Lu, Fangfei Niu, Fang Liu, Jiajia Gao, Yulin Sun, Xiaohang Zhao
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pcbi.1006360

ggsashimi: Sashimi plot revised for browser- and annotation-independent splicing visualization
Cited by: 137
Author(s): Diego Garrido-Martín, Emilio Palumbo, Roderic Guigó, Alessandra Breschi
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pcbi.1004890

A Crowdsourcing Approach to Developing and Assessing Prediction Algorithms for AML Prognosis
Cited by: 29
Author(s): David Noren, Byron L. Long, Raquel Norel, Kahn Rrhissorrakrai, Kenneth R. Hess, Chenyue W. Hu, Alex Bisberg, André Schultz, Erik Engquist, Li Liu, Xihui Lin, Gregory M. Chen, Honglei Xie, Geoffrey A. M. Hunter, Paul C. Boutros, О. А. Степанов, Thea Norman, Stephen H. Friend, Gustavo Stolovitzky, Steven M. Kornblau, Amina A. Qutub
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pcbi.1006991

Neurogranin stimulates Ca2+/calmodulin-dependent kinase II by suppressing calcineurin activity at specific calcium spike frequencies
Cited by: 16
Author(s): Lu Li, Massimo Lai, S P Cole, Nicolas Le Novère, Stuart J. Edelstein
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pcbi.1004723

Evolutionary Genomics Suggests That CheV Is an Additional Adaptor for Accommodating Specific Chemoreceptors within the Chemotaxis Signaling Complex
Cited by: 33
Author(s): Davi R. Ortega, Igor B. Zhulin
Software Mentions: 1
Published: over 10 years ago

10.18632/aging.103926

Identification of a competing endogenous RNA axis related to gastric cancer
Cited by: 9
Author(s): Fuqiang Zu, Hezhou Han, Weiwei Sheng, Jian Sun, Hui Zang, Yu Liang, Qingfeng Li
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pcbi.1006099

Biogeography and environmental conditions shape bacteriophage-bacteria networks across the human microbiome
Cited by: 33
Author(s): Geoffrey D. Hannigan, Melissa B. Duhaime, Danai Koutra, Patrick D. Schloss
Software Mentions: 1
Published: about 8 years ago

10.1186/s12876-021-01643-6

Expression and prognostic impact of FZDs in pancreatic adenocarcinoma
Cited by: 11
Author(s): Yang Li, Zirong Liu, Yamin Zhang
Software Mentions: 1
Published: over 5 years ago

10.1186/s12870-021-02837-6

The genetics and physiology of seed dormancy, a crucial trait in common bean domestication
Cited by: 20
Author(s): Afshin Soltani, Katelynn Walter, Andrew T. Wiersma, James P. Santiago, Michelle Quiqley, Daniel H. Chitwood, Timothy G. Porch, Phillip N. Miklas, Phillip E. McClean, Juan M. Osorno, David B. Lowry
Software Mentions: 1
Published: over 5 years ago

10.1186/1471-2164-14-136

A Drosophila functional evaluation of candidates from human genome-wide association studies of type 2 diabetes and related metabolic traits identifies tissue-specific roles for dHHEX
Cited by: 38
Author(s): Jay Pendse, Prasanna Venkatesh Ramachandran, Jianbo Na, Narisu Narisu, Jill L. Fink, Ross L. Cagan, Francis S. Collins, Thomas J. Baranski
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pbio.2007044

CRISPR screening using an expanded toolkit of autophagy reporters identifies TMEM41B as a novel autophagy factor
Cited by: 103
Author(s): Christopher J. Shoemaker, T.Q. Huang, N. Weir, Nicole J. Polyakov, Sebastian W. Schultz, Vladimir Denic
Software Mentions: 1
Published: about 7 years ago

10.1186/s12876-020-01510-w

Characterization of gut microbiota associated with clinical parameters in intrahepatic cholestasis of pregnancy
Cited by: 9
Author(s): Rong Li, Xuehai Chen, Zhongzhen Liu, Yan Chen, Chuan Liu, Lingfei Ye, Liang Xiao, Zhenjun Yang, Jian He, Wenjing Wang, Hongbo Qi
Software Mentions: 1
Published: over 5 years ago

10.1186/s12866-020-02041-w

The Epidome - a species-specific approach to assess the population structure and heterogeneity of Staphylococcus epidermidis colonization and infection
Cited by: 8
Author(s): Amalie Katrine Rendboe, Thor Bech Johannesen, Anna Cäcilia Ingham, Emeli Månsson, Søren Iversen, Sharmin Baig, Sofie Marie Edslev, Jørgen Skov Jensen, Bo Söderquist, Paal Skytt Andersen, Marc Stegger
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pbio.3000632

A widespread family of heat-resistant obscure (Hero) proteins protect against protein instability and aggregation
Cited by: 44
Author(s): Kaoru Tsuboyama, Tatsuya Osaki, Eriko Matsuura-Suzuki, Hiroko Kozuka‐Hata, Yuki Okada, Masaaki Oyama, Yoshiho Ikeuchi, Shigeo Iwasaki, Yukihide Tomari
Software Mentions: 1
Published: over 6 years ago

10.1186/s12876-021-01787-5

Discovery and validation of novel protein markers in mucosa of portal hypertensive gastropathy
Cited by: 0
Author(s): Ying Zhu, Wen Xu, Wei Hu, Fang Wang, Yan Zhou, Jianguo Xu, Wei Gong
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pbio.1002555

Phosphorylation of Def Regulates Nucleolar p53 Turnover and Cell Cycle Progression through Def Recruitment of Calpain3
Cited by: 29
Author(s): Yihong Guan, Delai Huang, Feng Chen, Ce Gao, Ting Tao, Hui Shi, Shanshan Zhao, Zuyuan Liao, Li Jan Lo, Yingchun Wang, Jun Chen, Jinrong Peng
Software Mentions: 1
Published: over 9 years ago

10.1128/mSystems.01041-20

Genomes of the “ Candidatus Actinomarinales” Order: Highly Streamlined Marine Epipelagic Actinobacteria
Cited by: 16
Author(s): Mario López‐Pérez, Jose M. Haro‐Moreno, Jaime Iranzo, Francisco Rodrı́guez-Valera
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pbio.2005189

Tissue-specific degradation of essential centrosome components reveals distinct microtubule populations at microtubule organizing centers
Cited by: 58
Author(s): Maria D. Sallee, Jennifer C. Zonka, Taylor D. Skokan, Brian Raftrey, Jessica L. Feldman
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pbio.1002452

Functional Sites Induce Long-Range Evolutionary Constraints in Enzymes
Cited by: 92
Author(s): Benjamin R. Jack, Austin G. Meyer, Julián Echave, Claus O. Wilke
Software Mentions: 1
Published: about 10 years ago

10.1186/1471-2164-13-703

Targeted enrichment of the black cottonwood (Populus trichocarpa) gene space using sequence capture
Cited by: 66
Author(s): Long Zhou, Jason A. Holliday
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pbio.3000650

A pedagogical approach to science outreach
Cited by: 7
Author(s): Marni B. McClure, Kacey C. Hall, Erin F. Brooks, Catherine T. Allen, Kenneth S. Lyle
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pbio.3000429

The intragenus and interspecies quorum-sensing autoinducers exert distinct control over Vibrio cholerae biofilm formation and dispersal
Cited by: 62
Author(s): Andrew A. Bridges, Bonnie L. Bassler
Software Mentions: 1
Published: over 6 years ago

10.3390/plants10081739

Context-Dependent Effects of Trichoderma Seed Inoculation on Anthracnose Disease and Seed Yield of Bean (Phaseolus vulgaris): Ambient Conditions Override Cultivar-Specific Differences
Cited by: 2
Author(s): Karina Gutiérrez-Moreno, Michelina Ruocco, Maurilia M. Monti, Octavio Martı́nez de la Vega, Martin Heil
Software Mentions: 1
Published: almost 5 years ago

10.1128/mSystems.01292-20

Mycobacteria Tolerate Carbon Monoxide by Remodeling Their Respiratory Chain
Cited by: 5
Author(s): Katherine Bayly, Paul R. F. Cordero, Ashleigh Kropp, Cheng Huang, Ralf B. Schittenhelm, Rhys Grinter, Chris Greening
Software Mentions: 1
Published: almost 5 years ago

10.3390/plants10020189

Relative Telomere Length and Telomerase Reverse Transcriptase (TERT) Expression Are Associated with Age in Almond (Prunus dulcis [Mill.] D.A.Webb)
Cited by: 4
Author(s): Katherine M. D’Amico-Willman, Elizabeth S. Anderson, Thomas M. Gradziel, Jonathan Fresnedo-Ramírez
Software Mentions: 1
Published: over 5 years ago

10.1186/s12889-021-11025-y

The role of chicken management practices in children’s exposure to environmental contamination: a mixed-methods analysis
Cited by: 8
Author(s): Simone Passarelli, Ramya Ambikapathi, Nilupa S. Gunaratna, Isabel Madzorera, Chelsey R. Canavan, Ramadhani A. Noor, Dagmawit Tewahido, Yemane Berhane, Simbarashe Sibanda, Lindiwe Majele Sibanda, Tshilidzi Madzivhandila, Bertha Munthali, Margaret McConnell, Christopher R. Sudfeld, Kirsten K. Davison, Wafaie W. Fawzi
Software Mentions: 1
Published: about 5 years ago

10.1186/s12864-019-6189-9

Capture of complete ciliate chromosomes in single sequencing reads reveals widespread chromosome isoforms
Cited by: 8
Author(s): Kelsi Lindblad, Jananan S. Pathmanathan, Sandrine Moreira, John R. Bracht, Robert Sebra, Elizabeth Hutton, Laura F. Landweber
Software Mentions: 1
Published: over 6 years ago

10.3390/plants9030373

Effects of Rhizome Integration on the Water Physiology of Phyllostachys edulis Clones Under Heterogeneous Water Stress
Cited by: 4
Author(s): Jing Xiong, Chunju Cai, Shaohui Fan, Guanglu Liu, Changming Wang, Benxue Chen
Software Mentions: 1
Published: about 6 years ago

10.3390/plants10040816

Broomrape Species Parasitizing Odontarrhena lesbiaca (Brassicaceae) Individuals Act as Nickel Hyperaccumulators
Cited by: 7
Author(s): Panayiotis G. Dimitrakopoulos, Maria Aloupi, Georgios Tetradis, George C. Adamidis
Software Mentions: 1
Published: about 5 years ago

10.3390/plants10040680

Floristic and Vegetation Changes on a Small Mediterranean Island over the Last Century
Cited by: 6
Author(s): Saverio Sciandrello, Salvatore Cambria, Gianpietro Giusso del Galdo, Riccardo Guarino, Pietro Minissale, Salvatore Pasta, Gianmarco Tavilla, A Cristaudo
Software Mentions: 1
Published: about 5 years ago

10.1002/cam4.2818

Identify potential clinical significance of long noncoding RNA forkhead box P4 antisense RNA 1 in patients with early stage pancreatic ductal adenocarcinoma
Cited by: 11
Author(s): Xiao‐Guang Liu, Hao Xu, Ming Chen, Xiaoyu Tan, Xiaofeng Chen, Yong‐Guang Yang, Manzhou Lin, Guohua Li, Xiangdang Liang, Yi‐Bin Qian, Guojia Yuan, Min‐Qiang Chen, Wentao Li, Huilai Miao, Mingyi Li, Xiwen Liao, Wei Dai, Nian‐Ping Chen
Software Mentions: 1
Published: over 6 years ago

10.3390/plants9060772

Cucumber Fruit Size and Shape Variations Explored from the Aspects of Morphology, Histology, and Endogenous Hormones
Cited by: 28
Author(s): Huan Liu, Yupeng Pan, Ce Liu, Yuanyuan Ding, Xiao Wang, Zhihui Cheng, Huanwen Meng
Software Mentions: 1
Published: almost 6 years ago

10.1002/cam4.1971

Activation of PTGS2 /NF‐κB signaling pathway enhances radiation resistance of glioma
Cited by: 22
Author(s): Cheng Tan, Liang Liu, Xiaoyang Liu, Ling Qi, Weiyao Wang, Guifang Zhao, Li-Bo Wang, Yimeng Dai
Software Mentions: 1
Published: over 7 years ago

10.18632/aging.104131

Identification of novel prognostic biomarkers in renal cell carcinoma
Cited by: 9
Author(s): Yuanzhang Zou, Lu Qiu, Qing Yao, Di Dong, Binghai Chen
Software Mentions: 1
Published: over 5 years ago

10.7554/eLife.41279

Synthetic and genomic regulatory elements reveal aspects of cis-regulatory grammar in mouse embryonic stem cells
Cited by: 50
Author(s): Dana King, Clarice Kit Yee Hong, James Shepherdson, David M Granas, Brett Maricque, Barak A. Cohen
Software Mentions: 1
Published: over 6 years ago

10.3390/plants10071380

Disparate Dynamics of Gene Body and cis-Regulatory Element Evolution Illustrated for the Senescence-Associated Cysteine Protease Gene SAG12 of Plants
Cited by: 7
Author(s): Emil Vatov, Uwe Ludewig, Ulrike Zentgraf
Software Mentions: 1
Published: almost 5 years ago

10.3390/plants8090338

SWEET Gene Family in Medicago truncatula: Genome-Wide Identification, Expression and Substrate Specificity Analysis
Cited by: 22
Author(s): Bin Hu, Hao Wu, Weifeng Huang, Jianbo Song, Yong Zhou, Yongjun Lin
Software Mentions: 1
Published: almost 7 years ago

10.3390/plants9111624

Advancements in Low-Chill Blueberry Vaccinium corymbosum L. Tissue Culture Practices
Cited by: 8
Author(s): Francesco Cappai, Alexandria Garcia, Ryan Cullen, Matthew Davis, Patricio Muńoz
Software Mentions: 1
Published: over 5 years ago

10.1186/s12863-020-0832-y

Genome-wide identification of Diacylglycerol Acyltransferases (DGAT) family genes influencing Milk production in Buffalo
Cited by: 19
Author(s): Jiajia Liu, Zhiquan Wang, Jun Li, Hui Li, Liguo Yang
Software Mentions: 1
Published: over 6 years ago

10.18632/aging.203227

Baicalein ameliorates osteoporosis via AKT/FOXO1 signaling
Cited by: 9
Author(s): Pan Cai, Yan Lu, Zhengyu Yin, Xiuhui Wang, Xiaoxiao Zhou, Zhuokai Li
Software Mentions: 1
Published: almost 5 years ago

10.1101/2021.04.19.21255737

When can we stop wearing masks? Agent-based modeling to identify when vaccine coverage makes nonpharmaceutical interventions for reducing SARS-CoV-2 infections redundant in indoor gatherings
Cited by: 3
Author(s): Trevor S. Farthing, Cristina Lanzas
Software Mentions: 1
Published: about 5 years ago

10.7717/peerj.5315

Touch-screen-guided task reveals a prosocial choice tendency by chimpanzees (Pan troglodytes)
Cited by: 4
Author(s): Renata S. Mendonça, Christoph D. Dahl, Susana Carvalho, Tetsuro Matsuzawa, Ikuma Adachi
Software Mentions: 1
Published: almost 8 years ago

10.7717/peerj.11608

Scaling the effects of ocean acidification on coral growth and coral–coral competition on coral community recovery
Cited by: 4
Author(s): Nicolas R. Evensen, Yves‐Marie Bozec, Peter J. Edmunds, Peter J. Mumby
Software Mentions: 1
Published: almost 5 years ago

10.7717/peerj.12052

A new threat to local marine biodiversity: filamentous mats proliferating at mesophotic depths off Rapa Nui
Cited by: 4
Author(s): Javier Sellanes, Matthias Gorny, German Zapata‐Hernández, Gonzalo Álvarez, Práxedes Muñoz, Fadia Tala
Software Mentions: 1
Published: almost 5 years ago

10.7717/peerj.6195

Hardly habitual: chimpanzees and gorillas show flexibility in their motor responses when presented with a causally-clear task
Cited by: 7
Author(s): Sarah L. Jacobson, Lydia M. Hopper
Software Mentions: 1
Published: over 7 years ago

10.1007/s00439-020-02168-w

AP1S1 missense mutations cause a congenital enteropathy via an epithelial barrier defect
Cited by: 23
Author(s): Katharina M C Klee, Andreas R. Janecke, Hasret Ayyıldız Civan, Štefan Rosipal, Peter Heinz‐Erian, Lukas A. Huber, Thomas Müller, Georg F. Vogel
Software Mentions: 1
Published: about 6 years ago

10.1002/cam4.3678

Correlation of immune infiltration with clinical outcomes in breast cancer patients: The 25‐gene prognostic signatures model
Cited by: 2
Author(s): Yushan Liu, Wai Tat Fu, Wei Chen, Yuxiang Lin, Jie Zhang, Chuan-Gui Song
Software Mentions: 1
Published: over 5 years ago

10.7554/eLife.64674

Propensity for somatic expansion increases over the course of life in Huntington disease
Cited by: 28
Author(s): Radhia Kacher, François‐Xavier Lejeune, Sandrine Noël, Cécile Cazeneuve, Alexis Brice, Sandrine Humbert, Alexandra Dürr
Software Mentions: 1
Published: about 5 years ago

10.7717/peerj.7451

Profiling the lncRNA-miRNA-mRNA ceRNA network to reveal potential crosstalk between inflammatory bowel disease and colorectal cancer
Cited by: 28
Author(s): Fangfang Sun, Weiwei Liang, Kejun Tang, Mengying Hong, Jing Qian
Software Mentions: 1
Published: almost 7 years ago

10.1186/s12864-018-4850-3

Transposable elements generate regulatory novelty in a tissue-specific fashion
Cited by: 76
Author(s): Marco Trizzino, Aurélie Kapusta, Christopher D. Brown
Software Mentions: 1
Published: almost 8 years ago

10.7717/peerj.6809

Identification of a putative competitive endogenous RNA network for lung adenocarcinoma using TCGA datasets
Cited by: 14
Author(s): Yuanyong Wang, Tong Lu, Yang Wo, Xiao Sun, Shicheng Li, Shuncheng Miao, Yanting Dong, Xiaoliang Leng, Wenjie Jiao
Software Mentions: 1
Published: about 7 years ago

10.7717/peerj.8266

Organ health and development in larval kingfish are unaffected by ocean acidification and warming
Cited by: 6
Author(s): Andrea Frommel, Colin J. Brauner, Bridie J. M. Allan, Simon Nicol, Darren M. Parsons, Steve Pether, Alvin N. Setiawan, Neville Smith, Philip L. Munday
Software Mentions: 1
Published: over 6 years ago

10.7717/peerj.2844

Determining virus-host interactions and glycerol metabolism profiles in geographically diverse solar salterns with metagenomics
Cited by: 4
Author(s): Abraham G Moller, Chun Liang
Software Mentions: 1
Published: over 9 years ago

10.1186/s12864-021-07492-7

Whole genome comparisons reveal panmixia among fall armyworm (Spodoptera frugiperda) from diverse locations
Cited by: 33
Author(s): Katrina Schlum, Kurt Lamour, Caroline Placidi De Bortoli, Rahul Banerjee, Robert L. Meagher, E. J. G. Pereira, María Gabriela Murúa, Gregory A. Sword, Ashley E. Tessnow, Diego Viteri Dillon, Angela M. Linares Ramirez, Komivi Senyo Akutse, Rebecca A. Schmidt‐Jeffris, Fangneng Huang, Dominic Reisig, Scott J. Emrich, Juan Luís Jurat-Fuentes
Software Mentions: 1
Published: over 5 years ago

10.1007/s00262-020-02781-8

The M1/M2 spectrum and plasticity of malignant pleural effusion-macrophage in advanced lung cancer
Cited by: 25
Author(s): Ming‐Fang Wu, Chin-Hsien Lin, Tzu‐Hang Yuan, Hsiang‐Yuan Yeh, Su Sf, Chin-Lin Guo, Gee‐Chen Chang, Ker-Chau Li, Chao‐Chi Ho, Huei‐Wen Chen
Software Mentions: 1
Published: over 5 years ago

10.1186/s41236-020-0010-1

Detecting heterogeneity in and between breast cancer cell lines
Cited by: 33
Author(s): Yang Shen, Betina Schmidt, Hans Kubitschke, Erik Morawetz, Benjamin Wolf, Josef A. Käs, Wolfgang Losert
Software Mentions: 1
Published: over 6 years ago

10.7717/peerj.10338

A molecular survey based on eDNA to assess the presence of a clown featherback (Chitala ornata) in a confined environment
Cited by: 7
Author(s): Maslin Osathanunkul, Toshifumi Minamoto
Software Mentions: 1
Published: over 5 years ago

10.7717/peerj.8269

Identification of miRNA precursors in the phloem of Cucurbita maxima
Cited by: 7
Author(s): Eugeny A. Tolstyko, Alexander A. Lezzhov, Andrey G. Solovyev
Software Mentions: 1
Published: over 6 years ago

10.18632/aging.203149

Association of changes in self-reported sleep duration with mild cognitive impairment in the elderly: a longitudinal study
Cited by: 7
Author(s): Xiyan Wang, Yan Chen, Bixuan Yue, Sifan Li, Qitong Liu, Qiaoyu Li, Li Lin, Jiangwei Sun
Software Mentions: 1
Published: about 5 years ago

10.7717/peerj.5149

Hi-MC: a novel method for high-throughput mitochondrial haplogroup classification
Cited by: 10
Author(s): Sandra P. Smieszek, Sabrina L. Mitchell, Eric Farber‐Eger, Olivia J. Veatch, Nicholas R. Wheeler, Robert Goodloe, Quinn S. Wells, Deborah G. Murdock, Dana C. Crawford
Software Mentions: 1
Published: almost 8 years ago

10.7717/peerj.8079

Identification of novel genes associated with litter size of indigenous sheep population in Xinjiang, China using specific-locus amplified fragment sequencing technology
Cited by: 9
Author(s): Haijun Ma, Chao Fang, Lingling Liu, Qiong Wang, Jueken Aniwashi, Yiming Sulaiman, Kezierkailedi Abudilaheman, Wujun Liu
Software Mentions: 1
Published: over 6 years ago

10.7717/peerj.1270

Improved estimates of age, growth and reproduction for the regionally endemic Galapagos sailfin grouperMycteroperca olfax(Jenyns, 1840)
Cited by: 13
Author(s): Paolo Usseglio, Alan M. Friedlander, Edward E. DeMartini, Anna Schuhbauer, Eva Schemmel, Pelayo Salinas de León
Software Mentions: 1
Published: over 10 years ago

10.7717/peerj.5007

Evaluating the utility of the female-specific mitochondrialf-orfgene for population genetic, phylogeographic and systematic studies in freshwater mussels (Bivalvia: Unionida)
Cited by: 7
Author(s): Brent M. Robicheau, Emily Chase, Walter R. Hoeh, John L. Harris, Donald T. Stewart, Sophie Breton
Software Mentions: 1
Published: about 8 years ago

10.18632/aging.103163

miR-125a-5p inhibits glycolysis by targeting hexokinase-II to improve pulmonary arterial hypertension
Cited by: 14
Author(s): Luo Lu, Lusheng Xiao, Guili Lian, Huajun Wang, Liangdi Xie
Software Mentions: 1
Published: about 6 years ago

10.7717/peerj.12121

A comprehensive review and call for studies on firefly larvae
Cited by: 7
Author(s): William B. Riley, Simone Policena Rosa, Luiz Felipe Lima da Silveira
Software Mentions: 1
Published: over 4 years ago

10.1186/s12860-021-00344-y

Identification and characterization of the LRR repeats in plant LRR-RLKs
Cited by: 10
Author(s): Tianshu Chen
Software Mentions: 1
Published: over 5 years ago

10.7717/peerj.3150

Effects of online group exercises for older adults on physical, psychological and social wellbeing: a randomized pilot trial
Cited by: 42
Author(s): Marcos Báez, Iman Khaghani Far, Francisco Ibarra, Michela Ferron, Daniele Didino, Fabio Casati
Software Mentions: 1
Published: about 9 years ago

10.1007/s00280-017-3366-x

Model-based prediction of myelosuppression and recovery based on frequent neutrophil monitoring
Cited by: 19
Author(s): Ida Netterberg, Elisabet I. Nielsen, Lena E. Friberg, Mats O. Karlsson
Software Mentions: 1
Published: almost 9 years ago

10.7717/peerj.9057

Culicidae-centric metabarcoding through targeted use of D2 ribosomal DNA primers
Cited by: 4
Author(s): Pedro M. Pedro, Jandui Almeida Amorim, Martha Virgínia Ribeiro Rojas, Ivy Luizi Rodrigues de Sá, Allan Kardec Ribeiro Galardo, Noel Fernandes Santos Neto, Dirceu Tornavoi de Carvalho, Kaio Augusto Nabas Ribeiro, María Tereza Pepe Razzolini, Maria Anice Mureb Sallum
Software Mentions: 1
Published: about 6 years ago

10.7717/peerj.4029

A microbial survey of the International Space Station (ISS)
Cited by: 49
Author(s): Jenna M. Lang, David A. Coil, Russell Y. Neches, Wendy E. Brown, Darlene Cavalier, Mark Severance, Jarrad Hampton-Marcell, Jack A. Gilbert, Jonathan A. Eisen
Software Mentions: 1
Published: over 8 years ago

Projects: cran: ggplot2

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Science Score: 100/100

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Papers Mentioning ggplot2 11,441