Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: ggplot2

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/ggplot2

Create Elegant Data Visualisations Using the Grammar of Graphics
48 versions
Latest release: about 1 year ago
4,921 dependent packages
2,865,232 downloads last month

Papers Mentioning ggplot2 11,441

10.2196/24694
Time Trends of the Public’s Attention Toward Suicide During the COVID-19 Pandemic: Retrospective, Longitudinal Time-Series Study
Cited by: 11
Author(s): Dayle Burnett, Valsamma Eapen, Ping‐I Lin
Software Mentions: 1
Published: almost 4 years ago
10.1371/journal.pone.0091805
Tissue Specific DNA Methylation in Normal Human Breast Epithelium and in Breast Cancer
Cited by: 23
Author(s): Avraham Abergel, Soonweng Cho, Ronit Uhlmann, Mia Leonov Polak, Judith Sandbank, Tami Karni, Itzhak Pappo, Ruvit Halperin, Zvi Vaknin, Avishay Sella, Saraswati Sukumar, Ella Evron
Software Mentions: 1
Published: over 10 years ago
10.2196/22645
Estimating the Incidence of Conjunctivitis by Comparing the Frequency of Google Search Terms With Clinical Data: Retrospective Study
Cited by: 3
Author(s): Paola Kammrath Betancor, Linda Tizek, Alexander Zink, Thomas Reinhard, Daniel Böhringer
Software Mentions: 1
Published: over 3 years ago
10.1371/journal.pone.0238616
The rice NLR pair Pikp-1/Pikp-2 initiates cell death through receptor cooperation rather than negative regulation
Cited by: 28
Author(s): Rafał Zdrzałek, Sophien Kamoun, Ryohei Terauchi, Hiromasa Saitoh, Mark J. Banfield
Software Mentions: 1
Published: about 4 years ago
10.1371/journal.pone.0215563
Quality of postoperative pain management in Ethiopia: A prospective longitudinal study
Cited by: 30
Author(s): Million Tesfaye Eshete, Petra I. Baeumler, Matthias Siebeck, Markos Tesfaye, Abraham Haileamlak, Girma G. Michael, Yemane Ayele, Dominik Irnich
Software Mentions: 1
Published: over 5 years ago
10.1186/s13104-019-4251-y
Zero-valent iron sand filtration reduces concentrations of virus-like particles and modifies virome community composition in reclaimed water used for agricultural irrigation
Cited by: 13
Author(s): Jessica Chopyk, Prachi Kulkarni, Daniel J. Nasko, Rhodel Bradshaw, Kalmia E. Kniel, Pei C. Chiu, Manan Sharma, Amy R. Sapkota
Software Mentions: 1
Published: over 5 years ago
10.1371/journal.pone.0240486
Potential application of Pseudomonas stutzeri W228 for removal of copper and lead from marine environments
Cited by: 7
Author(s): Carolina Coelho da Costa Waite, Guilherme Oliveira Andrade da Silva, José Augusto Pires Bitencourt, Luciana Pereira Torres Chequer, Simone Pennafirme, Diogo Jurelevicius, Lucy Seldin, Mírian Araújo Carlos Crapez
Software Mentions: 1
Published: about 4 years ago
10.2196/publichealth.5980
Public Response to Scientific Misconduct: Assessing Changes in Public Sentiment Toward the Stimulus-Triggered Acquisition of Pluripotency (STAP) Cell Case via Twitter
Cited by: 2
Author(s): Alberto Alexander Gayle, Motomu Shimaoka
Software Mentions: 1
Published: over 7 years ago
10.1093/annweh/wxaa080
Evaluation of Methods for Sampling of <i>Staphylococcus aureus</i> and Other <i>Staphylococcus</i> Species from Indoor Surfaces
Cited by: 8
Author(s): Anne Mette Madsen, Hoang U.T. Phan, Mathias Laursen, John Kerr White, Katrine Uhrbrand
Software Mentions: 1
Published: about 4 years ago
10.3390/ijerph110606400
Humidity and Gravimetric Equivalency Adjustments for Nephelometer-Based Particulate Matter Measurements of Emissions from Solid Biomass Fuel Use in Cookstoves
Cited by: 29
Author(s): Sutyajeet Soneja, Chen Chen, James M. Tielsch, Joanne Katz, Scott L. Zeger, William Checkley, Frank C. Curriero, Patrick N. Breysse
Software Mentions: 1
Published: over 10 years ago
10.3390/ijerph13030343
EQ-5D-5L in the General German Population: Comparison and Evaluation of Three Yearly Cross-Section Surveys
Cited by: 28
Author(s): Manuel B. Huber, Peter Reitmeir, Martin Vogelmann, Reiner Leidl
Software Mentions: 1
Published: over 8 years ago
10.1371/journal.pone.0108651
Barcoding Beetles: A Regional Survey of 1872 Species Reveals High Identification Success and Unusually Deep Interspecific Divergences
Cited by: 146
Author(s): Mikko Pentinsaari, Paul D. N. Hebert, Marko Mutanen
Software Mentions: 1
Published: about 10 years ago
10.1186/s12889-020-10066-z
Trends in national and subnational wealth related inequalities in use of maternal health care services in Nepal: an analysis using demographic and health surveys (2001–2016)
Cited by: 17
Author(s): Vishnu Prasad Sapkota, Umesh Prasad Bhusal, Kiran Acharya
Software Mentions: 1
Published: almost 4 years ago
10.1093/gbe/evy224
Assessing genomic admixture between cryptic Plutella moth species following secondary contact
Cited by: 3
Author(s): Christopher Ward, Simon W. Baxter
Software Mentions: 1
Published: about 6 years ago
10.1093/gbe/evy255
Genome Reduction in the Mosquito Symbiont<i>Asaia</i>
Cited by: 16
Author(s): Diego Peres Alonso, Maria Vittoria Mancini, Claudia Damiani, Alessia Cappelli, Irene Ricci, Marcus Vinícius Niz Alvarez, Claudio Bandi, Paulo Eduardo Martins Ribolla, Guido Favia
Software Mentions: 1
Published: almost 6 years ago
10.1093/gbe/evy256
Insights into the Evolution of the New World Diploid Cottons (<i>Gossypium</i>, Subgenus<i>Houzingenia</i>) Based on Genome Sequencing
Cited by: 34
Author(s): Corrinne E. Grover, Mark A. Arick, Adam Thrash, Justin L. Conover, William S. Sanders, Daniel G. Peterson, James Frelichowski, Jodi A. Scheffler, Brian E. Scheffler, Jonathan F. Wendel
Software Mentions: 1
Published: almost 6 years ago
10.1371/journal.pntd.0004315
Surveillance and Control of Aedes albopictus in the Swiss-Italian Border Region: Differences in Egg Densities between Intervention and Non-intervention Areas
Cited by: 22
Author(s): Tobias Suter, Eleonora Flacio, Begoña Feijoó Fariña, Lukas Engeler, Mauro Tonolla, Lêda Regis, Maria Angélica Borges dos Santos, Pie Müller
Software Mentions: 1
Published: almost 9 years ago
10.1371/journal.pntd.0004425
Exposure versus Susceptibility as Alternative Bases for New Approaches to Surveillance for Schistosoma japonicum in Low Transmission Environments
Cited by: 5
Author(s): Shuo Wang, Robert C. Spear
Software Mentions: 1
Published: over 8 years ago
10.3390/ijerph14040451
Job Strain and Casual Blood Pressure Distribution: Looking beyond the Adjusted Mean and Taking Gender, Age, and Use of Antihypertensives into Account. Results from ELSA-Brasil
Cited by: 10
Author(s): Leidjaira Lopes Juvanhol, Enirtes Caetano Prates Melo, Marília Sá Carvalho, Dóra Chor, José Geraldo Mill, Rosane Härter Griep
Software Mentions: 1
Published: over 7 years ago
10.1371/journal.pntd.0006607
Evaluation of the rSP03B sero-strip, a newly proposed rapid test for canine exposure to Phlebotomus perniciosus, vector of Leishmania infantum
Cited by: 9
Author(s): Laura Willen, Pascal Mertens, Petr Volf
Software Mentions: 1
Published: over 6 years ago
10.1093/gbe/evz221
Deciphering Ancestral Sex Chromosome Turnovers Based on Analysis of Male Mutation Bias
Cited by: 9
Author(s): Armando Acosta, Mónica Martínez-Pacheco, Karina Díaz-Barba, Niccole Porras, Mariana Gutiérrez-Mariscal, Diego Cortez
Software Mentions: 1
Published: about 5 years ago
10.1371/journal.pntd.0007832
Field study of the improved rapid sand fly exposure test in areas endemic for canine leishmaniasis
Cited by: 8
Author(s): Laura Willen, Tereza Leštinová, Barbora Kalousková, Petra Sumová, Tatiana Spitzová, Rita Velez, E. Domenech, Ondřej Vaněk, Montserrat Gállego, Pascal Mertens, Petr Volf
Software Mentions: 1
Published: about 5 years ago
10.1093/gbe/evaa064
piRNA Clusters Need a Minimum Size to Control Transposable Element Invasions
Cited by: 19
Author(s): Robert Kofler
Software Mentions: 1
Published: over 4 years ago
10.1093/gbe/evaa203
The Genetic Architecture of Emerging Fungicide Resistance in Populations of a Global Wheat Pathogen
Cited by: 23
Author(s): Daniel Pereira, Bruce A. McDonald, Daniel Croll
Software Mentions: 1
Published: about 4 years ago
10.1093/gbe/evaa270
Long-Read Genome Assemblies Reveal Extraordinary Variation in the Number and Structure of MHC Loci in Birds
Cited by: 37
Author(s): Ke He, Piotr Minias, Peter O. Dunn
Software Mentions: 1
Published: almost 4 years ago
10.1245/s10434-018-6396-7
A Population-based Study on Lymph Node Retrieval in Patients with Esophageal Cancer: Results from the Dutch Upper Gastrointestinal Cancer Audit
Cited by: 38
Author(s): Leonie R. van der Werf, Johan L. Dikken, Mark I. van Berge Henegouwen, Valery Lemmens, G. Nieuwenhuijzen, Bas P. L. Wijnhoven
Software Mentions: 1
Published: over 6 years ago
10.3389/fgene.2021.693936
Genome-Wide Identification and Characterization of the Potato IQD Family During Development and Stress
Cited by: 9
Author(s): Chao Mei, Yuwei Liu, Xue Dong, Qianna Song, Huijie Wang, Hongwei Shi, Feng Rui-yun
Software Mentions: 1
Published: over 3 years ago
10.1186/s12889-021-11479-0
Dynamic monitor on psychological problems of medical aid teams in the context of corona virus disease 2019: a multi-stage and multi-factor quantitative study
Cited by: 2
Author(s): Yanji Zhou, Chengyu Li, Zhang Xi-yu, Li Xu, Yuze Li, Wenqing Miao, Yingbo Dai, Dingyun You, Ye Li
Software Mentions: 1
Published: over 3 years ago
10.3389/fphar.2021.713197
Comprehensive Analysis of Fecal Microbiome and Metabolomics in Hepatic Fibrosis Rats Reveal Hepatoprotective Effects of Yinchen Wuling Powder From the Host-Microbial Metabolic Axis
Cited by: 5
Author(s): Yumeng Zhang, Min Zhao, Xue Jiang, Qiaoyu Qiao, Tingting Liu, Chunjie Zhao, Miao Wang
Software Mentions: 1
Published: over 3 years ago
10.1371/journal.pntd.0005337
Intensive trapping of blood-fed Anopheles darlingi in Amazonian Peru reveals unexpectedly high proportions of avian blood-meals
Cited by: 36
Author(s): Marta Moreno, Marlon P. Saavedra, Sara A. Bickersmith, Catharine Prussing, Adrian Michalski, Carlos Tong Rios, Joseph M. Vinetz, Jan E. Conn
Software Mentions: 1
Published: over 7 years ago
10.1038/s41598-021-83823-8
High diversity, inbreeding and a dynamic Pleistocene demographic history revealed by African buffalo genomes
Cited by: 8
Author(s): Deon de Jager, Brigitte Glanzmann, Marlo Möller, Eileen G. Hoal, Paul van Helden, Cindy Kim Harper, Paulette Bloomer
Software Mentions: 1
Published: over 3 years ago
10.3390/cells9102199
HbF Levels in Sickle Cell Disease Are Associated with Proportion of Circulating Hematopoietic Stem and Progenitor Cells and CC-Chemokines
Cited by: 0
Author(s): Caterina P. Minniti, Seda S. Tolu, Kai Wang, Zi Yan, Karl Robert, Shouping Zhang, Andrew Crouch, Joan Uehlinger, Deepa Manwani, Eric E. Bouhassira
Software Mentions: 1
Published: about 4 years ago
10.1186/s13073-018-0542-5
Simple paired heavy- and light-chain antibody repertoire sequencing using endoplasmic reticulum microsomes
Cited by: 10
Author(s): Praneeth Reddy Devulapally, Jörg Bürger, Thorsten Mielke, Zoltán Konthur, Hans Lehrach, Marie–Laure Yaspo, Jörn Glökler, Hans-Jörg Warnatz
Software Mentions: 1
Published: over 6 years ago
10.1002/ece3.4461
Are Ponto-Caspian species able to cross salinity barriers? A case study of the gammarid<i>Pontogammarus maeoticus</i>
Cited by: 8
Author(s): Nora‐Charlotte Pauli, Filipa Paiva, Elizabeta Briski
Software Mentions: 1
Published: about 6 years ago
10.3389/fgene.2021.665555
Identification of a Competing Endogenous RNA Network Related to Immune Signature in Lung Adenocarcinoma
Cited by: 2
Author(s): Ting Zhu, Yongjun Yu, Jun Li, Kewei Ren
Software Mentions: 1
Published: over 3 years ago
10.1172/jci.insight.136533
Humoral immune responses mediate the development of a restrictive phenotype of chronic lung allograft dysfunction
Cited by: 13
Author(s): Keizo Misumi, David Wheeler, Yoshiro Aoki, M.P. Combs, Russell R. Braeuer, Ryuji Higashikubo, Wenjun Li, Daniel Kreisel, Ragini Vittal, Jeffrey L. Myers, Amir Lagstein, Neff Walker, Carol Farver, Vibha N. Lama
Software Mentions: 1
Published: almost 4 years ago
10.1007/s12031-017-0898-9
Selection and Prioritization of Candidate Drug Targets for Amyotrophic Lateral Sclerosis Through a Meta-Analysis Approach
Cited by: 20
Author(s): Giovanna Morello, Antonio Gianmaria Spampinato, Francesca Luisa Conforti, Velia D’Agata, Sebastiano Cavallaro
Software Mentions: 1
Published: over 7 years ago
10.3389/fmicb.2019.00493
Characterization of the Interactive Effects of Labile and Recalcitrant Organic Matter on Microbial Growth and Metabolism
Cited by: 10
Author(s): Lauren N. M. Quigley, Abigail Edwards, Andrew D. Steen, Alison Buchan
Software Mentions: 1
Published: over 5 years ago
10.1038/s41598-021-84914-2
Long-term monitoring of SARS-CoV-2 RNA in wastewater of the Frankfurt metropolitan area in Southern Germany
Cited by: 92
Author(s): Shelesh Agrawal, Laura Orschler, Susanne Lackner
Software Mentions: 1
Published: over 3 years ago
10.1002/ece3.3316
Behavior and season affect crayfish detection and density inference using environmental <scp>DNA</scp>
Cited by: 57
Author(s): Nicholas Dunn, Victoria Priestley, Alba Herraiz, Richard Arnold, Vincent Savolainen
Software Mentions: 1
Published: about 7 years ago
10.1186/s12889-021-11025-y
The role of chicken management practices in children’s exposure to environmental contamination: a mixed-methods analysis
Cited by: 8
Author(s): Simone Passarelli, Ramya Ambikapathi, Nilupa S. Gunaratna, Isabel Madzorera, Chelsey R. Canavan, Ramadhani A. Noor, Dagmawit Tewahido, Yemane Berhane, Simbarashe Sibanda, Lindiwe Majele Sibanda, Tshilidzi Madzivhandila, Bertha Munthali, Margaret McConnell, Christopher R. Sudfeld, Kirsten K. Davison, Wafaie W. Fawzi
Software Mentions: 1
Published: over 3 years ago
10.1186/s12885-018-5254-0
Programmed cell death ligand 1 (PD-L1, CD274) in cholangiocarcinoma – correlation with clinicopathological data and comparison of antibodies
Cited by: 28
Author(s): Mark Kriegsmann, Stephanie Roessler, Katharina Kriegsmann, Marcus Renner, Rémi Longuespée, Thomas Albrecht, M. Loeffler, Stephan Singer, Arianeb Mehrabi, Monika Vogel, Anita Pathil, Bruno Köhler, Christoph Springfeld, Christian Rupp, Karl Heinz Weiss, Benjamin Goeppert
Software Mentions: 1
Published: almost 6 years ago
10.1371/journal.pcbi.1008119
Ten simple rules to increase computational skills among biologists with Code Clubs
Cited by: 5
Author(s): Ada K. Hagan, Nicholas A. Lesniak, Marcy J. Balunas, Lucas Bishop, William L. Close, Matthew K. Doherty, Amanda G. Elmore, Kaitlin J. Flynn, Geoffrey D. Hannigan, Charlie C. Koumpouras, Matthew L. Jenior, Ariangela J. Kozik, Kathryn McBride, Samara Rifkin, Joshua M. A. Stough, Kelly L Sovacool, Marc A. Sze, Sarah Tomkovich, Begüm D. Topçuoğlu, Patrick D. Schloss
Software Mentions: 1
Published: about 4 years ago
10.1186/s40478-018-0624-z
The relevance of cerebrospinal fluid α-synuclein levels to sporadic and familial Alzheimer’s disease
Cited by: 38
Author(s): Daniel Twohig, Elena Rodriguez‐Vieitez, Sigrid Botne Sando, Guro Berge, Camilla Lauridsen, Ina Møller, Gøril Rolfseng Grøntvedt, Geir Bråthen, Kalicharan Patra, Guojun Bu, Tammie L.S. Benzinger, Celeste M. Karch, Anne M. Fagan, John C. Morris, Randall J. Bateman, Agneta Nordberg, Linda R. White, Henrietta M. Nielsen
Software Mentions: 1
Published: almost 6 years ago
10.1371/journal.pcbi.1006468
Wrangling distributed computing for high-throughput environmental science: An introduction to HTCondor
Cited by: 10
Author(s): Richard A. Erickson, Michael N. Fienen, S. Grace McCalla, Emily L. Weiser, Melvin L. Bower, Jonathan M. Knudson, Greg Thain
Software Mentions: 1
Published: about 6 years ago
10.1371/journal.pcbi.1003638
Are Current Atomistic Force Fields Accurate Enough to Study Proteins in Crowded Environments?
Cited by: 117
Author(s): Dražen Petrov, Bojan Žagrović
Software Mentions: 1
Published: over 10 years ago
10.3390/cells9010095
Angiogenic Activity of Cytochalasin B-Induced Membrane Vesicles of Human Mesenchymal Stem Cells
Cited by: 25
Author(s): Marina O. Gomzikova, Margarita Zhuravleva, V. V. Vorobev, И. И. Салафутдинов, Alexander Laikov, Sevindzh K. Kletukhina, Е. В. Мартынова, Leysan G. Tazetdinova, Atara Ntekim, Svetlana Khaiboullina, Albert A. Rizvanov
Software Mentions: 1
Published: almost 5 years ago
10.1172/jci.insight.147474
The effect of low-dose IL-2 and Treg adoptive cell therapy in patients with type 1 diabetes
Cited by: 76
Author(s): Shen Dong, Kamir J Hiam-Galvez, Cody T. Mowery, Kevan C. Herold, Stephen E. Gitelman, Jonathan H. Esensten, Weihong Liu, Angela Lares, Ashley S. Leinbach, Michael Lee, Vinh Nguyen, Stanley Tamaki, Whitney Tamaki, Courtney M. Tamaki, Morvarid Mehdizadeh, Amy Putnam, Matthew H. Spitzer, Chun Jimmie Ye, Qizhi Tang, Jeffrey A. Bluestone
Software Mentions: 1
Published: about 3 years ago
10.1038/s41598-021-84911-5
ABA signalling and metabolism are not essential for dark-induced stomatal closure but affect response speed
Cited by: 11
Author(s): Ashley J. Pridgeon, Alistair M. Hetherington
Software Mentions: 1
Published: over 3 years ago
10.1371/journal.pcbi.1006360
ggsashimi: Sashimi plot revised for browser- and annotation-independent splicing visualization
Cited by: 137
Author(s): Diego Garrido-Martín, Emilio Palumbo, Roderic Guigó, Alessandra Breschi
Software Mentions: 1
Published: over 6 years ago
10.18632/aging.103223
MiR-16-5p regulates postmenopausal osteoporosis by directly targeting VEGFA
Cited by: 28
Author(s): Tao Yu, Xiaomeng You, Haichao Zhou, Wenbao He, Zihua Li, Bing Li, Xia Jiang, Hongying Zhu, Youguang Zhao, Guangrong Yu, Yuan Xiong, Yunfeng Yang
Software Mentions: 1
Published: over 4 years ago
10.1021/acs.jafc.0c06279
Xylooligosaccharides Increase <i>Bifidobacteria</i> and <i>Lachnospiraceae</i> in Mice on a High-Fat Diet, with a Concomitant Increase in Short-Chain Fatty Acids, Especially Butyric Acid
Cited by: 40
Author(s): Karin Berger, Stephen Burleigh, Maria Lindahl, Abhishek Bhattacharya, Prachiti Patil, Henrik Stålbrand, Eva Nordberg Karlsson, Frida Fåk Hållenius, Margareta Nyman, Patrick Adlercreutz
Software Mentions: 1
Published: over 3 years ago
10.7554/eLife.58910
S-phase-independent silencing establishment in Saccharomyces cerevisiae
Cited by: 16
Author(s): Davis Goodnight, Jasper Rine
Software Mentions: 1
Published: over 4 years ago
10.3233/JAD-190132
Low Serum High-Density Lipoprotein Cholesterol Levels Associate with the C9orf72 Repeat Expansion in Frontotemporal Lobar Degeneration Patients
Cited by: 13
Author(s): Olli Jääskeläinen, Eino Solje, Anette Hall, Kasper Katisko, Ville Korhonen, Mika Tiainen, Antti J. Kangas, Seppo Helisalmi, Maria Pikkarainen, Anne M. Koivisto, Päivi Hartikainen, Mikko Hiltunen, Mika Ala‐Korpela, Hilkka Soininen, Pasi Soininen, Annakaisa Haapasalo, Anne M. Remes, Sanna‐Kaisa Herukka
Software Mentions: 1
Published: about 5 years ago
10.1016/j.jacc.2018.09.073
His Resynchronization Versus Biventricular Pacing in Patients With Heart Failure and Left Bundle Branch Block
Cited by: 167
Author(s): Ahran Arnold, Matthew Shun-Shin, Daniel Keene, James P. Howard, S.M. Afzal Sohaib, Ian Wright, Graham D. Cole, Norman Qureshi, David Lefroy, Michael Koa‐Wing, Nick Linton, Phang Boon Lim, Nicholas S. Peters, D. Wyn Davies, Amal Muthumala, Mark Tanner, Kenneth A. Ellenbogen, Prapa Kanagaratnam, Dárrel P. Francis, Zachary I. Whinnett
Software Mentions: 1
Published: almost 6 years ago
10.1186/s12885-021-07837-1
Novel immune-related genes in the tumor microenvironment with prognostic value in breast cancer
Cited by: 7
Author(s): Wen Tan, Maomao Liu, Liangshan Wang, Yang Guo, Chunhong Wei, Shuqi Zhang, Chengyu Luo, Nan Liu
Software Mentions: 1
Published: almost 4 years ago
10.3389/fgene.2019.01065
Genome-Wide Analysis of Genetic Diversity in Plasmodium falciparum Isolates From China–Myanmar Border
Cited by: 15
Author(s): Run Ye, Yini Tian, Yufu Huang, Yilong Zhang, Jian Wang, Xin Sun, Hongning Zhou, Dongmei Zhang, Weiqing Pan
Software Mentions: 1
Published: about 5 years ago
10.7554/eLife.66815
Human airway cells prevent SARS-CoV-2 multibasic cleavage site cell culture adaptation
Cited by: 64
Author(s): Mart M. Lamers, Anna Z Mykytyn, Tim I Breugem, Yiquan Wang, Douglas C. Wu, Samra Riesebosch, Petra B. van den Doel, Debby Schipper, Theo M. Bestebroer, Nicholas C. Wu, Bart L. Haagmans
Software Mentions: 1
Published: over 3 years ago
10.1038/s41598-021-85367-3
Vaginal microbiome and serum metabolite differences in late gestation commercial sows at risk for pelvic organ prolapse
Cited by: 9
Author(s): Zoë E Kiefer, Lucas R Koester, Lucas Showman, Jamie M Studer, Amanda Chipman, Aileen F. Keating, Stephan Schmitz‐Esser, Jason W. Ross
Software Mentions: 1
Published: over 3 years ago
10.2196/jmir.6371
Self-Monitoring Utilization Patterns Among Individuals in an Incentivized Program for Healthy Behaviors
Cited by: 32
Author(s): Ju Young Kim, Nathan E. Wineinger, Michael Taitel, Jennifer M Radin, Osayi E Akinbosoye, Jenny Jiang, Nima Nikzad, Gregory Orr, Eric J. Topol, Steven R. Steinhubl
Software Mentions: 1
Published: about 8 years ago
10.1111/joa.13091
Human biological variation in sesamoid bone prevalence: the curious case of the fabella
Cited by: 26
Author(s): Michael A. Berthaume, Anthony M.J. Bull
Software Mentions: 1
Published: about 5 years ago
10.1371/journal.pcbi.1004890
A Crowdsourcing Approach to Developing and Assessing Prediction Algorithms for AML Prognosis
Cited by: 29
Author(s): David Noren, Byron L. Long, Raquel Norel, Kahn Rrhissorrakrai, Kenneth R. Hess, Chenyue W. Hu, Alex Bisberg, André Schultz, Erik Engquist, Li Liu, Xihui Lin, Gregory M. Chen, Honglei Xie, Geoffrey A. M. Hunter, Paul C. Boutros, О. А. Степанов, Thea Norman, Stephen H. Friend, Gustavo Stolovitzky, Steven M. Kornblau, Amina A. Qutub
Software Mentions: 1
Published: over 8 years ago
10.1371/journal.pcbi.1006991
Neurogranin stimulates Ca2+/calmodulin-dependent kinase II by suppressing calcineurin activity at specific calcium spike frequencies
Cited by: 16
Author(s): Lu Li, Massimo Lai, S P Cole, Nicolas Le Novère, Stuart J. Edelstein
Software Mentions: 1
Published: almost 5 years ago
10.2196/25409
Why #WeAreNotWaiting—Motivations and Self-Reported Outcomes Among Users of Open-source Automated Insulin Delivery Systems: Multinational Survey
Cited by: 33
Author(s): Katarina Braune, Katarzyna Anna Gajewska, Axel Thieffry, Dana Lewis, Timothée Froment, Shane O’Donnell, Jane Speight, Christel Hendrieckx, Jasmine Schipp, Timothy Skinner, Henriette Langstrup, Adrian Tappe, Klemens Raile, Bryan Cleal
Software Mentions: 1
Published: over 3 years ago
10.1111/1365-2656.12953
A multi‐faceted approach testing the effects of previous bacterial exposure on resistance and tolerance
Cited by: 12
Author(s): Megan A. M. Kutzer, Joachim Kurtz, Sophie A. O. Armitage
Software Mentions: 1
Published: over 5 years ago
10.1371/journal.pcbi.1004723
Evolutionary Genomics Suggests That CheV Is an Additional Adaptor for Accommodating Specific Chemoreceptors within the Chemotaxis Signaling Complex
Cited by: 33
Author(s): Davi R. Ortega, Igor B. Zhulin
Software Mentions: 1
Published: almost 9 years ago
10.1371/journal.pcbi.1006099
Biogeography and environmental conditions shape bacteriophage-bacteria networks across the human microbiome
Cited by: 33
Author(s): Geoffrey D. Hannigan, Melissa B. Duhaime, Danai Koutra, Patrick D. Schloss
Software Mentions: 1
Published: over 6 years ago
10.1186/s12884-020-03077-6
Metformin and insulin treatment of gestational diabetes: effects on inflammatory markers and IGF-binding protein-1 – secondary analysis of a randomized controlled trial
Cited by: 9
Author(s): Mikael S. Huhtala, Kristiina Tertti, Juuso Juhila, Timo Sorsa, Tapani Rönnemaa
Software Mentions: 1
Published: over 4 years ago
10.1186/s12884-020-02961-5
Gut microbiota in early pregnancy among women with Hyperglycaemia vs. Normal blood glucose
Cited by: 16
Author(s): Beibei Gao, Mengdan Zhong, Qiong Shen, Ying Wu, Mengdie Cao, Songwen Ju, Lei Chen
Software Mentions: 1
Published: over 4 years ago
10.1515/biol-2020-0077
In silico identification of Capsicum type III polyketide synthase genes and expression patterns in Capsicum annuum
Cited by: 2
Author(s): Delong Kan, Di Zhao, Pengfei Duan
Software Mentions: 1
Published: about 4 years ago
10.1371/journal.pbio.2007044
CRISPR screening using an expanded toolkit of autophagy reporters identifies TMEM41B as a novel autophagy factor
Cited by: 103
Author(s): Christopher J. Shoemaker, T.Q. Huang, N. Weir, Nicole J. Polyakov, Sebastian W. Schultz, Vladimir Denic
Software Mentions: 1
Published: over 5 years ago
10.1371/journal.pbio.3000632
A widespread family of heat-resistant obscure (Hero) proteins protect against protein instability and aggregation
Cited by: 44
Author(s): Kaoru Tsuboyama, Tatsuya Osaki, Eriko Matsuura-Suzuki, Hiroko Kozuka‐Hata, Yuki Okada, Masaaki Oyama, Yoshiho Ikeuchi, Shigeo Iwasaki, Yukihide Tomari
Software Mentions: 1
Published: over 4 years ago
10.1371/journal.pbio.1002555
Phosphorylation of Def Regulates Nucleolar p53 Turnover and Cell Cycle Progression through Def Recruitment of Calpain3
Cited by: 29
Author(s): Yihong Guan, Delai Huang, Feng Chen, Ce Gao, Ting Tao, Hui Shi, Shanshan Zhao, Zuyuan Liao, Li Jan Lo, Yingchun Wang, Jun Chen, Jinrong Peng
Software Mentions: 1
Published: about 8 years ago
10.1371/journal.pbio.2005189
Tissue-specific degradation of essential centrosome components reveals distinct microtubule populations at microtubule organizing centers
Cited by: 58
Author(s): Maria D. Sallee, Jennifer C. Zonka, Taylor D. Skokan, Brian Raftrey, Jessica L. Feldman
Software Mentions: 1
Published: over 6 years ago
10.1038/s41598-021-84827-0
A multi-scale pipeline linking drug transcriptomics with pharmacokinetics predicts in vivo interactions of tuberculosis drugs
Cited by: 11
Author(s): Joseph M. Cicchese, Awanti Sambarey, Denise E. Kirschner, Jennifer J. Linderman, Sriram Chandrasekaran
Software Mentions: 1
Published: over 3 years ago
10.1093/jac/dkv400
Clinical implications of reduced susceptibility to fluoroquinolones in paediatricShigella sonneiandShigella flexneriinfections
Cited by: 11
Author(s): Corinne N. Thompson, Nga Tran Vu Thieu, Phat Voong Vinh, Anh Nguyen Duc, Marcel Wolbers, Ha Vinh, James I. Campbell, Dung Tran Thi Ngoc, Nguyễn Văn Minh Hoàng, Tuyen Ha Thanh, To Nguyen Thi Nguyen, Nguyen Phu Huong Lan, Christopher M. Parry, Nguyễn Văn Vĩnh Châu, Guy Thwaites, Duy Pham Thanh, Stephen Baker
Software Mentions: 1
Published: almost 9 years ago
10.1371/journal.pbio.1002452
Functional Sites Induce Long-Range Evolutionary Constraints in Enzymes
Cited by: 92
Author(s): Benjamin R. Jack, Austin G. Meyer, Julián Echave, Claus O. Wilke
Software Mentions: 1
Published: over 8 years ago
10.1186/s12884-018-2130-5
Iron supplementation during pregnancy – a cross-sectional study undertaken in four German states
Cited by: 19
Author(s): Irmela Demuth, Annett Martin, Anke Weißenborn
Software Mentions: 1
Published: almost 6 years ago
10.3390/cells9051284
In Vitro-Generated Hypertrophic-Like Adipocytes Displaying PPARG Isoforms Unbalance Recapitulate Adipocyte Dysfunctions In Vivo
Cited by: 14
Author(s): Marianna Aprile, Simona Cataldi, Caterina Perfetto, Maria Rosaria Ambrosio, Paola Italiani, Rosarita Taté, Matthias Blüher, Alfredo Ciccodicola, Valerio Costa
Software Mentions: 1
Published: over 4 years ago
10.1007/s10811-015-0631-4
Light and temperature effects on bioactivity in diatoms
Cited by: 83
Author(s): Richard Andre Ingebrigtsen, Espen Hansen, Jeanette Hammer Andersen, Hans Christian Eilertsen
Software Mentions: 1
Published: over 9 years ago
10.1007/s10803-019-04222-7
The Relation Between Autistic Traits, the Degree of Synaesthesia, and Local/Global Visual Perception
Cited by: 7
Author(s): Floor Burghoorn, Mark Dingemanse, Rob van Lier, Tessa M. van Leeuwen
Software Mentions: 1
Published: about 5 years ago
10.18632/aging.202639
The age pattern of the male-to-female ratio in mortality from COVID-19 mirrors that of cardiovascular disease in the general population
Cited by: 10
Author(s): Ila Nimgaonkar, Linda Valeri, Ezra Süsser, Sabiha Hussain, Jag Sunderram, Abraham Aviv
Software Mentions: 1
Published: almost 4 years ago
10.7554/eLife.60095
Peripheral natural killer cells in chronic hepatitis B patients display multiple molecular features of T cell exhaustion
Cited by: 15
Author(s): Marie Marotel, Marine Villard, Annabelle Drouillard, Issam Tout, Laurie Besson, Omran Allatif, Marine Pujol, Yamila Rocca, Michelle Ainouze, Guillaume Roblot, Sébastien Viel, Melissa Gomez, V. Loustaud, Sophie Alain, David Durantel, Thierry Walzer, Uzma Hasan, Antoine Marçais
Software Mentions: 1
Published: almost 4 years ago
10.1128/JB.00827-16
Growth Trade-Offs Accompany the Emergence of Glycolytic Metabolism in Shewanella oneidensis MR-1
Cited by: 13
Author(s): Lon M. Chubiz, Christopher J. Marx
Software Mentions: 1
Published: over 7 years ago
10.2196/15597
Analysis of Collective Human Intelligence for Diagnosis of Pigmented Skin Lesions Harnessed by Gamification Via a Web-Based Training Platform: Simulation Reader Study
Cited by: 11
Author(s): Claus Rinner, Harald Kittler, Cliff Rosendahl, Philipp Tschandl
Software Mentions: 1
Published: almost 5 years ago
10.1186/s12885-021-08108-9
Multi gene mutation signatures in colorectal cancer patients: predict for the diagnosis, pathological classification, staging and prognosis
Cited by: 19
Author(s): Yan Zhuang, Hailong Wang, Da Jiang, Ying Liu, Lixia Feng, Caijuan Tian, Mingyu Pu, Xiaowei Wang, Jiangyan Zhang, Y. Hu, Pengfei Liu
Software Mentions: 1
Published: over 3 years ago
10.1074/jbc.RA119.007730
Cross-reactivity of a rice NLR immune receptor to distinct effectors from the rice blast pathogen Magnaporthe oryzae provides partial disease resistance
Cited by: 27
Author(s): Freya A. Varden, Hiromasa Saitoh, Kae Yoshino, Marina Franceschetti, Sophien Kamoun, Ryohei Terauchi, Mark J. Banfield
Software Mentions: 1
Published: over 5 years ago
10.1186/s40478-021-01233-3
Predictors of cognitive impairment in primary age-related tauopathy: an autopsy study
Cited by: 25
Author(s): Megan A. Iida, Kurt Farrell, Jamie M. Walker, Timothy E. Richardson, Gabriel A. Marx, Clare Bryce, Dushyant P. Purohit, Gai Ayalon, Thomas G. Beach, Eileen H. Bigio, Etty Cortés, Marla Gearing, Vahram Haroutunian, Corey T. McMillan, Edward B. Lee, Dennis W. Dickson, Ann C. McKee, Thor D. Stein, John Q. Trojanowski, Randall L. Woltjer, Gábor G. Kovács, Julia Kofler, Jeffrey Kaye, Charles L. White, John F. Crary
Software Mentions: 1
Published: over 3 years ago
10.1371/journal.pbio.3000650
A pedagogical approach to science outreach
Cited by: 7
Author(s): Marni B. McClure, Kacey C. Hall, Erin F. Brooks, Catherine T. Allen, Kenneth S. Lyle
Software Mentions: 1
Published: over 4 years ago
10.1186/s12885-021-08171-2
Comparison of breast cancer surrogate subtyping using a closed-system RT-qPCR breast cancer assay and immunohistochemistry on 100 core needle biopsies with matching surgical specimens
Cited by: 7
Author(s): Slavica Janeva, Toshima Z. Parris, Salmir Nasic, Shahin De Lara, Karin Larsson, Riccardo A. Audisio, Roger Olofsson Bagge, Anikó Kovács
Software Mentions: 1
Published: over 3 years ago
10.1002/ece3.3908
Usnic acid, as a biotic factor, changes the ploidy level in mosses
Cited by: 14
Author(s): Michal Goga, Dajana Ručová, Vladislav Kolarčik, Marko S. Sabovljević, Martin Bačkor, Ingeborg Lang
Software Mentions: 1
Published: almost 7 years ago
10.1038/s41598-021-86244-9
Finding Nemo’s clock reveals switch from nocturnal to diurnal activity
Cited by: 7
Author(s): Gregor Schalm, Kristina Bruns, Nina Drachenberg, Nathalie Geyer, Nicholas S. Foulkes, Cristiano Bertolucci, Gabriele Gerlach
Software Mentions: 1
Published: over 3 years ago
10.1016/j.jbc.2021.100780
Genome-wide CRISPR screening reveals nucleotide synthesis negatively regulates autophagy
Cited by: 8
Author(s): Kaito Mimura, Jun-Ichi Sakamaki, Hideaki Morishita, Masahito Kawazu, Hiroyuki Mano, Noboru Mizushima
Software Mentions: 1
Published: almost 4 years ago
10.1016/j.jbc.2021.101175
Deamidation drives molecular aging of the SARS-CoV-2 spike protein receptor-binding motif
Cited by: 3
Author(s): Ramiro Lorenzo, Lucas A. Defelipe, Lucio Aliperti, Stephan Niebling, Tânia F. Custódio, Christian Löw, Jennifer Schwarz, Kim Remans, Patricio O. Craig, Lisandro H. Otero, S. Klinke, María García-Alai, Ignacio E. Sánchez, Leonardo G. Alonso
Software Mentions: 1
Published: about 3 years ago
10.1186/s40709-021-00133-w
Long‐term monitoring of common spadefoot toad activity in a European steppe using barn owl pellets
Cited by: 0
Author(s): Lukas Landler, Katharina Stefke
Software Mentions: 1
Published: almost 4 years ago
10.1186/s12884-021-03853-y
Reduction in massive postpartum haemorrhage and red blood cell transfusion during a national quality improvement project, Obstetric Bleeding Strategy for Wales, OBS Cymru: an observational study
Cited by: 25
Author(s): Sarah Bell, Rachel Collis, Philip Pallmann, Christopher M. Bailey, Kathryn James, Miriam John, Kevin Kelly, Thomas Kitchen, Cerys Scarr, Adam Watkins, Tracey Edey, Elinore Macgillivray, Kathryn Greaves, I. Volikas, James Tozer, Niladri Sengupta, Iolo Roberts, Claire Francis, Peter William Collins
Software Mentions: 1
Published: over 3 years ago
10.1186/s12870-017-1051-1
Brief temperature stress during reproductive stages alters meiotic recombination and somatic mutation rates in the progeny of Arabidopsis
Cited by: 21
Author(s): Ramswaroop Saini, Amit Kumar Singh, Shanmuhapreya Dhanapal, Thoufeequl Hakeem Saeed, Geoffrey J. Hyde, Ramamurthy Baskar
Software Mentions: 1
Published: over 7 years ago
10.1002/ece3.3738
Feather mite abundance varies but symbiotic nature of mite‐host relationship does not differ between two ecologically dissimilar warblers
Cited by: 10
Author(s): Alix E. Matthews, Jeffery L. Larkin, Douglas W. Raybuck, Morgan C. Slevin, Scott H. Stoleson, Than J. Boves
Software Mentions: 1
Published: almost 7 years ago
10.1038/s41598-021-86590-8
Dynamic bacterial community response to Akashiwo sanguinea (Dinophyceae) bloom in indoor marine microcosms
Cited by: 9
Author(s): Seung Won Jung, JunSu Kang, Joon‐Sang Park, Hyoung Min Joo, Sung-Suk Suh, Di Kang, Taek-Kyun Lee, Hyun-Jung Kim
Software Mentions: 1
Published: over 3 years ago
10.1002/jbmr.3803
Mendelian Randomization Analysis Reveals a Causal Influence of Circulating Sclerostin Levels on Bone Mineral Density and Fractures
Cited by: 22
Author(s): Jie Zheng, Winfried Maerz, Ingrid Gergei, Marcus E. Kleber, Christiane Drechsler, Christoph Wanner, Vincent Brandenburg, Sjur Reppe, Kaare M. Gautvik, Carolina Medina‐Gomez, Enisa Shevroja, Arthur Gilly, Young‐Chan Park, George Dedoussis, Eleftheria Zeggini, Mattias Lorentzon, Petra Henning, Ulf H. Lerner, Karin Nilsson, Sofia Movérare‐Skrtic, Denis Baird, Benjamin Elsworth, Louise Falk, Alix Groom, Terence D. Capellini, Elin Grundberg, Maria Nethander, Claes Ohlsson, George Davey Smith, Jonathan H Tobias
Software Mentions: 1
Published: over 5 years ago