cran: ggplot2 | Projects | Ecosyste.ms: Papers

10.3390/v13061118

Estimates and Determinants of SARS-Cov-2 Seroprevalence and Infection Fatality Ratio Using Latent Class Analysis: The Population-Based Tirschenreuth Study in the Hardest-Hit German County in Spring 2020
Cited by: 22
Author(s): Ralf Wagner, David Peterhoff, Stephanie Beileke, Felix Günther, Melanie Berr, Sebastian Einhauser, Alexander Schütz, Hans Helmut Niller, Philipp Steininger, Antje Knöll, Matthias Tenbusch, Clara Maier, Klaus Korn, Klaus Stark, André Gessner, Ralph Burkhardt, Michael Kabesch, Holger Schedl, Helmut Küchenhoff, Annette Pfahlberg, Iris M. Heid, Olaf Gefeller, Klaus Überla
Software Mentions: 1
Published: almost 5 years ago

10.18632/oncotarget.19926

Mitochondrial genome variation and prostate cancer: a review of the mutational landscape and application to clinical management
Cited by: 25
Author(s): Anton M.F. Kalsbeek, Eva Chan, Niall M. Corcoran, Christopher M. Hovens, Vanessa M. Hayes
Software Mentions: 1
Published: almost 9 years ago

10.3390/v13081649

Serological Detection of SARS-CoV-2 Antibodies in Naturally-Infected Mink and Other Experimentally-Infected Animals
Cited by: 6
Author(s): Francisco J. Berguido, Peter D. Burbelo, Alessio Bortolami, Francesco Bonfante, Kerstin Wernike, Donata Hoffmann, Anne Balkema‐Buschmann, Martin Beer, William G. Dundon, Charles Euloge Lamien, Giovanni Cattoli
Software Mentions: 1
Published: almost 5 years ago

10.1172/jci.insight.147474

The effect of low-dose IL-2 and Treg adoptive cell therapy in patients with type 1 diabetes
Cited by: 76
Author(s): Shen Dong, Kamir J Hiam-Galvez, Cody T. Mowery, Kevan C. Herold, Stephen E. Gitelman, Jonathan H. Esensten, Weihong Liu, Angela Lares, Ashley S. Leinbach, Michael Lee, Vinh Nguyen, Stanley Tamaki, Whitney Tamaki, Courtney M. Tamaki, Morvarid Mehdizadeh, Amy Putnam, Matthew H. Spitzer, Chun Jimmie Ye, Qizhi Tang, Jeffrey A. Bluestone
Software Mentions: 1
Published: over 4 years ago

10.1021/acs.jafc.0c06279

Xylooligosaccharides Increase Bifidobacteria and Lachnospiraceae in Mice on a High-Fat Diet, with a Concomitant Increase in Short-Chain Fatty Acids, Especially Butyric Acid
Cited by: 40
Author(s): Karin Berger, Stephen Burleigh, Maria Lindahl, Abhishek Bhattacharya, Prachiti Patil, Henrik Stålbrand, Eva Nordberg Karlsson, Frida Fåk Hållenius, Margareta Nyman, Patrick Adlercreutz
Software Mentions: 1
Published: about 5 years ago

10.3233/JAD-190132

Low Serum High-Density Lipoprotein Cholesterol Levels Associate with the C9orf72 Repeat Expansion in Frontotemporal Lobar Degeneration Patients
Cited by: 13
Author(s): Olli Jääskeläinen, Eino Solje, Anette Hall, Kasper Katisko, Ville Korhonen, Mika Tiainen, Antti J. Kangas, Seppo Helisalmi, Maria Pikkarainen, Anne M. Koivisto, Päivi Hartikainen, Mikko Hiltunen, Mika Ala‐Korpela, Hilkka Soininen, Pasi Soininen, Annakaisa Haapasalo, Anne M. Remes, Sanna‐Kaisa Herukka
Software Mentions: 1
Published: over 6 years ago

10.1016/j.jacc.2018.09.073

His Resynchronization Versus Biventricular Pacing in Patients With Heart Failure and Left Bundle Branch Block
Cited by: 167
Author(s): Ahran Arnold, Matthew Shun-Shin, Daniel Keene, James P. Howard, S.M. Afzal Sohaib, Ian Wright, Graham D. Cole, Norman Qureshi, David Lefroy, Michael Koa‐Wing, Nick Linton, Phang Boon Lim, Nicholas S. Peters, D. Wyn Davies, Amal Muthumala, Mark Tanner, Kenneth A. Ellenbogen, Prapa Kanagaratnam, Dárrel P. Francis, Zachary I. Whinnett
Software Mentions: 1
Published: over 7 years ago

10.7554/eLife.61287

Characterization of the mechanism by which the RB/E2F pathway controls expression of the cancer genomic DNA deaminase APOBEC3B
Cited by: 22
Author(s): Pieter A. Roelofs, Chai Yeen Goh, Boon Haow Chua, Matthew C. Jarvis, Teneale A. Stewart, John D. McCann, Rebecca M. McDougle, Michael A. Carpenter, John W.M. Martens, Paul N. Span, Dennis Kappei, Reuben S. Harris
Software Mentions: 1
Published: over 5 years ago

10.1111/joa.13091

Human biological variation in sesamoid bone prevalence: the curious case of the fabella
Cited by: 26
Author(s): Michael A. Berthaume, Anthony M.J. Bull
Software Mentions: 1
Published: over 6 years ago

10.3390/v13081572

Variable In Vivo Hepatitis D Virus (HDV) RNA Editing Rates According to the HDV Genotype
Cited by: 9
Author(s): Samira Dziri, Christophe Rodriguez, Athenaïs Gerber, Ségolène Brichler, Chakib Alloui, Dominique Roulot, Paul Dény, Jean‐Michel Pawlotsky, Emmanuel Gordien, Frédéric Le Gal
Software Mentions: 1
Published: almost 5 years ago

10.7717/peerj.564

Mitochondrial cytochrome b sequence data are not an improvement for species identification in scleractinian corals
Cited by: 10
Author(s): John P. Wares
Software Mentions: 1
Published: over 11 years ago

10.1111/1365-2656.12953

A multi‐faceted approach testing the effects of previous bacterial exposure on resistance and tolerance
Cited by: 12
Author(s): Megan A. M. Kutzer, Joachim Kurtz, Sophie A. O. Armitage
Software Mentions: 1
Published: about 7 years ago

10.3389/fmicb.2017.02372

Comparing the Healthy Nose and Nasopharynx Microbiota Reveals Continuity As Well As Niche-Specificity
Cited by: 85
Author(s): Ilke De Boeck, Stijn Wittouck, Sander Wuyts, Eline Oerlemans, Marianne F.L. van den Broek, Dieter Vandenheuvel, Olivier M. Vanderveken, Sarah Lebeer
Software Mentions: 1
Published: over 8 years ago

10.18632/oncotarget.18032

Transcriptome analysis reveals a role for the endothelial ANP-GC-A signaling in interfering with pre-metastatic niche formation by solid cancers
Cited by: 3
Author(s): Takashi Nojiri, Miki Arai, Yutaka Suzuki, Motofumi Kumazoe, Takeshi Tokudome, Koichi Miura, Jun Hino, Hiroshi Hosoda, Minoru Miyazato, Meinoshin Okumura, Shinpei Kawaoka, Kenji Kangawa
Software Mentions: 1
Published: about 9 years ago

10.3389/fmicb.2016.02137

The Resistome of Farmed Fish Feces Contributes to the Enrichment of Antibiotic Resistance Genes in Sediments below Baltic Sea Fish Farms
Cited by: 94
Author(s): Windi I. Muziasari, Leena Pitkänen, Henning Sørum, Robert D. Stedtfeld, James M. Tiedje, Marko Virta
Software Mentions: 1
Published: over 9 years ago

10.1093/jac/dkv400

Clinical implications of reduced susceptibility to fluoroquinolones in paediatricShigella sonneiandShigella flexneriinfections
Cited by: 11
Author(s): Corinne N. Thompson, Nga Tran Vu Thieu, Phat Voong Vinh, Anh Nguyen Duc, Marcel Wolbers, Ha Vinh, James I. Campbell, Dung Tran Thi Ngoc, Nguyễn Văn Minh Hoàng, Tuyen Ha Thanh, To Nguyen Thi Nguyen, Nguyen Phu Huong Lan, Christopher M. Parry, Nguyễn Văn Vĩnh Châu, Guy Thwaites, Duy Pham Thanh, Stephen Baker
Software Mentions: 1
Published: over 10 years ago

10.3389/fmicb.2021.716523

Evaluation of the Antibacterial Activity of Crude Extracts Obtained From Cultivation of Native Endophytic Fungi Belonging to a Tropical Montane Rainforest in Colombia
Cited by: 11
Author(s): Esteban Charria-Girón, María C. Espinosa, Andrea Zapata-Montoya, María José Soto Méndéz, Juan P. Caicedo, Andrés F. Dávalos, Beatriz E. Ferro, Aída M. Vasco-Palacios, Nelson Caicedo
Software Mentions: 1
Published: over 4 years ago

10.1007/s10811-015-0631-4

Light and temperature effects on bioactivity in diatoms
Cited by: 83
Author(s): Richard Andre Ingebrigtsen, Espen Hansen, Jeanette Hammer Andersen, Hans Christian Eilertsen
Software Mentions: 1
Published: almost 11 years ago

10.1007/s10803-019-04222-7

The Relation Between Autistic Traits, the Degree of Synaesthesia, and Local/Global Visual Perception
Cited by: 7
Author(s): Floor Burghoorn, Mark Dingemanse, Rob van Lier, Tessa M. van Leeuwen
Software Mentions: 1
Published: over 6 years ago

10.1128/JB.00827-16

Growth Trade-Offs Accompany the Emergence of Glycolytic Metabolism in Shewanella oneidensis MR-1
Cited by: 13
Author(s): Lon M. Chubiz, Christopher J. Marx
Software Mentions: 1
Published: about 9 years ago

10.3390/cancers13020275

Role of Omentin in Obesity Paradox in Lung Cancer
Cited by: 8
Author(s): S.C. Parida, Sumit Siddharth, Dipali Sharma
Software Mentions: 1
Published: over 5 years ago

10.1074/jbc.RA119.007730

Cross-reactivity of a rice NLR immune receptor to distinct effectors from the rice blast pathogen Magnaporthe oryzae provides partial disease resistance
Cited by: 27
Author(s): Freya A. Varden, Hiromasa Saitoh, Kae Yoshino, Marina Franceschetti, Sophien Kamoun, Ryohei Terauchi, Mark J. Banfield
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-021-95113-4

GC-TOF/MS-based metabolomics analysis to investigate the changes driven by N-Acetylcysteine in the plant-pathogen Xanthomonas citri subsp. citri
Cited by: 3
Author(s): Simone Cristina Picchi, Mariana de Souza e Silva, Luiz Leonardo Saldanha, Henrique Ferreira, Marco Aurélio Takita, Camila Caldana, Alessandra Alves de Souza
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-021-94963-2

Development of a CNS-permeable reactivator for nerve agent exposure: an iterative, multi-disciplinary approach
Cited by: 5
Author(s): Brian J. Bennion, Michael Malfatti, Nicholas A. Be, Heather A. Enright, Saphon Hok, C. Linn Cadieux, Timothy S. Carpenter, Victoria Lao, Edward A. Kuhn, M. Windy McNerney, Felice C. Lightstone, Tin Nguyen, Carlos A. Valdez
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-021-95307-w

Identification and characterization of Piwi-interacting RNAs in human placentas of preeclampsia
Cited by: 2
Author(s): Jie He, Miaomiao Chen, Jiacheng Xu, Jie Fang, Zheng Liu, Hongbo Qi
Software Mentions: 1
Published: almost 5 years ago

10.1111/gcbb.12419

Could Miscanthus replace maize as the preferred substrate for anaerobic digestion in the United Kingdom? Future breeding strategies
Cited by: 10
Author(s): Sarah Purdy, Anne Maddison, Christopher Nunn, Ana L. Winters, Emma Timms-Taravella, Cerys Jones, John Clifton‐Brown, Iain S. Donnison, Joe Gallagher
Software Mentions: 1
Published: over 9 years ago

10.3389/fimmu.2020.605170

Deep Sequencing of B Cell Receptor Repertoires From COVID-19 Patients Reveals Strong Convergent Immune Signatures
Cited by: 81
Author(s): Jacob D. Galson, Sebastian Schaetzle, Rachael Bashford-Rogers, Matthew I. J. Raybould, Aleksandr Kovaltsuk, Gavin J. Kilpatrick, Ralph Minter, Donna K. Finch, Jorge Amil Dias, Louisa K. James, Gavin Thomas, Wing-Yiu Jason Lee, Jason R. Betley, Olivia Cavlan, Alex Leech, Charlotte Deane, Joan Seoane, Carlos Caldas, Daniel J. Pennington, Paul Pfeffer, Jane Osbourn
Software Mentions: 1
Published: over 5 years ago

10.3389/fimmu.2021.738123

Characterising the Phenotypic Diversity of Antigen-Specific Memory B Cells Before and After Vaccination
Cited by: 6
Author(s): M. Christian Tjiam, Sonia Fernández, Martyn A. French
Software Mentions: 1
Published: over 4 years ago

10.3390/microorganisms7120619

Metagenomics of Atacama Lithobiontic Extremophile Life Unveils Highlights on Fungal Communities, Biogeochemical Cycles and Carbohydrate-Active Enzymes
Cited by: 21
Author(s): Benito Gómez-Silva, Claudia Vilo-Muñoz, Alexandra Galetović, Qunfeng Dong, Hugo G Castelán-Sánchez, Yordanis Pérez-Llano, María del Rayo Sánchez-Carbente, Sonia Dávila-Ramos, Nohemí Gabriela Cortés-López, Liliana Martínez-Ávila, Alan D. W. Dobson, Ramón Alberto Batista-García
Software Mentions: 1
Published: over 6 years ago

10.3390/microorganisms9040870

Gluconacetobacter diazotrophicus Pal5 Enhances Plant Robustness Status under the Combination of Moderate Drought and Low Nitrogen Stress in Zea mays L.
Cited by: 11
Author(s): Muhammad Aammar Tufail, M. Touceda-González, I. Pertot, Ralf‐Udo Ehlers
Software Mentions: 1
Published: about 5 years ago

10.1002/glia.24048

Elovl5 is required for proper action potential conduction along peripheral myelinated fibers
Cited by: 6
Author(s): Eriola Hoxha, Ilaria Balbo, Roberta Parolisi, Matteo Audano, Francesca Montarolo, Francesco Ravera, Michela Guglielmotto, Luísa Muratori, Stefania Raimondo, Eleonora DiGregorio, Annalisa Buffo, Alfredo Brusco, Barbara Borroni, Nico Mitro, Donatella Caruso, Filippo Tempia
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.pone.0247367

SARS-CoV-2 viral shedding characteristics and potential evidence for the priority for faecal specimen testing in diagnosis
Cited by: 18
Author(s): Yuan Chen, Hongling Wang, Kefeng Li, An Tang, Yongyu Dai, Bing Wu, Hui Zhang, Jiabei Chen, Jie-nan Liu, Wenjie Wu, GU Song-ye, Hai Wang, Haodi Xu, Mingyu Wu, Menglu Yu, Yuchao Wang, Xinwei Yu, J. He, Shelan Liu, Yongli Zhang, Zhendong Tong, Jianbo Yan
Software Mentions: 1
Published: over 5 years ago

10.1002/glia.23144

Suppression of SNARE-dependent exocytosis in retinal glial cells and its effect on ischemia-induced neurodegeneration
Cited by: 13
Author(s): Lysann Wagner, Thomas Pannicke, Vanessa Rupprecht, Ina Frommherz, Cornelia Volz, Peter Illéš, Johannes Hirrlinger, Herbert Jägle, Veronica Egger, Philip G. Haydon, Frank W. Pfrieger, Antje Grosche
Software Mentions: 1
Published: about 9 years ago

10.3389/fimmu.2019.00783

PD-1 Dynamically Regulates Inflammation and Development of Brain-Resident Memory CD8 T Cells During Persistent Viral Encephalitis
Cited by: 31
Author(s): .. Shwetank, Elizabeth Frost, Taryn E Mockus, Heather M. Ren, Mesut Toprak, Matthew D Lauver, Colleen S. Netherby, Ge Jin, Jennifer M. Cosby, Brian D Evavold, Aron E. Lukacher
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-021-95417-5

Alterations in protein expression and site-specific N-glycosylation of prostate cancer tissues
Cited by: 8
Author(s): Simon Sugár, Gábor Tóth, Fanni Bugyi, Károly Vékey, Katalin Karászi, László Drahos, Lilla Turiák
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-021-95421-9

Validity of the Gender Dysphoria diagnosis and incidence trends in Sweden: a nationwide register study
Cited by: 11
Author(s): Malin Indremo, Richard A. White, Thomas Frisell, Sven Cnattingius, Alkistis Skalkidou, Johan Isaksson, Fotios C. Papadopoulos
Software Mentions: 1
Published: almost 5 years ago

10.1093/gigascience/giab050

SCIGA: Software for large-scale, single-cell immunoglobulin repertoire analysis
Cited by: 0
Author(s): Haocheng Ye, Lin Cheng, Bin Ju, Gang Xu, Yang Liu, Shuye Zhang, Lifei Wang, Zheng Zhang
Software Mentions: 1
Published: almost 5 years ago

10.1002/ctm2.342

Distinct kinetics of immunoglobulin isotypes reveal early diagnosis and disease severity of COVID‐19: A 6‐month follow‐up
Cited by: 7
Author(s): Siyang Yu, Jianghong An, Xuejiao Liao, Haiyan Wang, Fen Ma, Dapeng Li, Aimin Li, Weilong Liu, Siwei Zhang, Mingfeng Liao, Lei Liu, Juanjuan Zhao, Shaojun Xing, Lanlan Wei, Zheng Zhang
Software Mentions: 1
Published: over 5 years ago

10.1186/s40169-019-0254-5

Systems biology approaches toward autosomal dominant polycystic kidney disease (ADPKD)
Cited by: 8
Author(s): Ilnaz Rahimmanesh, Razieh Fatehi
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms22158140

Monitoring Human Milk β-Casein Phosphorylation and O-Glycosylation Over Lactation Reveals Distinct Differences between the Proteome and Endogenous Peptidome
Cited by: 18
Author(s): Kelly A. Dingess, Inge Gazi, Henk W. P. van den Toorn, Marko Mank, Bernd Stahl, Karli R. Reiding, Albert J. R. Heck
Software Mentions: 1
Published: almost 5 years ago

10.1093/gigascience/giab004

FASTQuick: rapid and comprehensive quality assessment of raw sequence reads
Cited by: 0
Author(s): Fan Zhang, Hyun Min Kang
Software Mentions: 1
Published: over 5 years ago

10.1007/s00122-021-03902-2

Unraveling the genetics of tomato fruit weight during crop domestication and diversification
Cited by: 8
Author(s): Lara Pereira, Lei Zhang, Manoj Sapkota, Alexis Ramos, Hamid Razifard, Ana L. Caicedo, Esther van der Knaap
Software Mentions: 1
Published: almost 5 years ago

10.3389/fimmu.2019.02547

Phenotypic Analysis of Human Lymph Nodes in Subjects With New-Onset Type 1 Diabetes and Healthy Individuals by Flow Cytometry
Cited by: 7
Author(s): Jennie H.M. Yang, Leena Khatri, Marius Mickunas, Evangelia Williams, Danijela Tatović, Mohammad Alhadj Ali, Philippa Young, Penelope Moyle, Vishal Sahni, Ryan Wang, Rejbinder Kaur, Gillian M. Tannahill, Andrew R Beaton, Daniëlle M. Gerlag, Caroline . S. Savage, Antonella Napolitano Rosen, Frank Waldron‐Lynch, Colin Dayan, Timothy Tree
Software Mentions: 1
Published: over 6 years ago

10.7717/peerj.11608

Scaling the effects of ocean acidification on coral growth and coral–coral competition on coral community recovery
Cited by: 4
Author(s): Nicolas R. Evensen, Yves‐Marie Bozec, Peter J. Edmunds, Peter J. Mumby
Software Mentions: 1
Published: almost 5 years ago

10.7717/peerj.5315

Touch-screen-guided task reveals a prosocial choice tendency by chimpanzees (Pan troglodytes)
Cited by: 4
Author(s): Renata S. Mendonça, Christoph D. Dahl, Susana Carvalho, Tetsuro Matsuzawa, Ikuma Adachi
Software Mentions: 1
Published: almost 8 years ago

10.1093/gigascience/giy024

Differential protein expression and post-translational modifications in metronidazole-resistant Giardia duodenalis
Cited by: 37
Author(s): Samantha J. Emery, Louise Baker, Brendan R E Ansell, Mehdi Mirzaei, Paul A. Haynes, Malcom J McConville, Staffan G. Svärd, Aaron R. Jex
Software Mentions: 1
Published: about 8 years ago

10.1002/ece3.7094

Forest floor plant diversity drives the use of mature spruce forests by European bison
Cited by: 5
Author(s): Bogdan Jaroszewicz, Joanna Borysowicz, Olga Cholewińska
Software Mentions: 1
Published: over 5 years ago

10.6061/clinics/2020/e1913

SELAdb: A database of exonic variants in a Brazilian population referred to a quaternary medical center in São Paulo
Cited by: 14
Author(s): Antônio Marcondes Lerário, Dipika R. Mohan, Luciana Ribeiro Montenegro, Mariana Ferreira de Assis Funari, Mirian Yumie Nishi, Amanda de Moraes Narcizo, A. Benedetti, Sueli Mieko Oba-Shinjo, Aurélio José Vitorino, Rogério Alexandre Scripnic Xavier dos Santos, Alexander A L Jorge, Luiz Fernando Onuchic, Suely Kazue Nagahashi Marie, Berenice Bilharinho Mendonça
Software Mentions: 1
Published: over 6 years ago

10.3389/fimmu.2017.01744

Efficacy Testing of H56 cDNA Tattoo Immunization against Tuberculosis in a Mouse Model
Cited by: 5
Author(s): Anouk C.M. Platteel, Natalie E. Nieuwenhuizen, Teresa Domaszewska, Stefanie Schürer, Ulrike Zedler, Volker Brinkmann, Alice J.A.M. Sijts, Stefan H. E. Kaufmann
Software Mentions: 1
Published: over 8 years ago

10.3390/nu11020337

Autism Spectrum Disorder (ASD) with and without Mental Regression is Associated with Changes in the Fecal Microbiota
Cited by: 61
Author(s): Julio Plaza‐Díaz, Antonio Gómez-Fernández, Natalia Chueca, María José de la Torre-Aguilar, Ángel Gil, Juan Luis Pérez‐Navero, Katherine Flores-Rojas, Pilar Martín-Borreguero, Patricio Solís-Urra, Francisco Javier Ruiz‐Ojeda, Féderico García, Mercedes Gil-Campos
Software Mentions: 1
Published: over 7 years ago

10.1093/gigascience/giy015

Piggy: a rapid, large-scale pan-genome analysis tool for intergenic regions in bacteria
Cited by: 47
Author(s): Harry A. Thorpe, Sion C. Bayliss, Samuel K. Sheppard, Edward J. Feil
Software Mentions: 1
Published: over 8 years ago

10.7150/thno.56539

Mutational spectrum and precision oncology for biliary tract carcinoma
Cited by: 27
Author(s): Jianzhen Lin, Yinghao Cao, Yang Xu, Guangyu Li, Yang Shi, Dongxu Wang, Junyu Long, Yang Song, Jianshan Mao, Fucun Xie, Yi Bai, Lei Zhang, Xiaobo Yang, Xueshuai Wan, Anqiang Wang, Mei Guan, Lin Zhao, Ke Hu, Jie Pan, Li Huo, Xin Lü, Yilei Mao, Xinting Sang, Henghui Zhang, Kai Wang, Xiaoyue Wang, Haitao Zhao
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pgen.1004423

Phenotypic Dissection of Bone Mineral Density Reveals Skeletal Site Specificity and Facilitates the Identification of Novel Loci in the Genetic Regulation of Bone Mass Attainment
Cited by: 126
Author(s): John P. Kemp, Carolina Medina‐Gomez, Karol Estrada, Beaté St Pourcain, Denise H.M. Heppe, Nicole M. Warrington, Ling Oei, Susan M. Ring, Claudia J. Kruithof, Nicholas J. Timpson, Lisa E. Wolber, Sjur Reppe, Kaare M. Gautvik, Elin Grundberg, Bing Ge, Bram C. J. van der Eerden, Jeroen van de Peppel, Matthew A. Hibbs, Cheryl Ackert‐Bicknell, Kwangbom Choi, Daniel L. Koller, Michael J. Econs, Frances Williams, Tatiana Foroud, M. Carola Zillikens, Claes Ohlsson, Albert Hofman, André G. Uitterlinden, George Davey Smith, Vincent W. V. Jaddoe, Jonathan H Tobias, Fernando Rivadeneira, David M. Evans
Software Mentions: 1
Published: almost 12 years ago

10.3390/microorganisms9071399

Engraftment of Bacteria after Fecal Microbiota Transplantation Is Dependent on Both Frequency of Dosing and Duration of Preparative Antibiotic Regimen
Cited by: 10
Author(s): Vancheswaran Gopalakrishnan, E. Ashley Dozier, Matthew S. Glover, Steven Novick, Michael W Ford, Christopher Morehouse, Paul Warrener, Carolina Caceres, Sonja Hess, Bret R. Sellman, Taylor S. Cohen
Software Mentions: 1
Published: almost 5 years ago

10.3389/fimmu.2018.03008

Heme Drives Susceptibility of Glomerular Endothelium to Complement Overactivation Due to Inefficient Upregulation of Heme Oxygenase-1
Cited by: 30
Author(s): Olivier May, Nicolas S. Merle, Anne Grünenwald, Viviane Gnemmi, Juliette Léon, Christine Payet, Tania Robe-Rybkine, Romain Paule, Florian Delguste, Simon C. Satchell, Peter W. Mathieson, Marc Hazzan, Éric Boulanger, Jordan D. Dimitrov, Véronique Frémeaux‐Bacchi, Marie Frimat, Lubka T. Roumenina
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0209742

Range overlap between the sword-billed hummingbird and its guild of long-flowered species: An approach to the study of a coevolutionary mosaic
Cited by: 11
Author(s): Florencia Soteras, Marcela Moré, Ana C. Ibañez, María del Rosario Iglesias, Andrea A. Cocucci
Software Mentions: 1
Published: over 7 years ago

10.3390/ijms21238950

Exploring the Interaction between the SWI/SNF Chromatin Remodeling Complex and the Zinc Finger Factor CTCF
Cited by: 11
Author(s): Mariangela Valletta, Rosita Russo, Ilaria Baglivo, Veronica Russo, Sara Ragucci, Annamaria Sandomenico, Emanuela Iaccarino, Menotti Ruvo, Italia De Feis, Claudia Angelini, Sara Iachettini, Annamaria Biroccio, Paolo V. Pedone, Angela Chambery
Software Mentions: 1
Published: over 5 years ago

10.1186/s13073-021-00946-3

Characterizing DNA methylation signatures and their potential functional roles in Merkel cell carcinoma
Cited by: 10
Author(s): Hemant Gujar, Arjun Mehta, Hongtao Li, Yvonne Tsai, Xianyang Qiu, Daniel J. Weisenberger, Miriam Galvonas Jasiulionis, Gino K In, Gangning Liang
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.pone.0154949

Subsets of Visceral Adipose Tissue Nuclei with Distinct Levels of 5-Hydroxymethylcytosine
Cited by: 8
Author(s): Ping Yu, Lexiang Ji, Kevin J. Lee, Miao Yu, Chuan He, Suresh Ambati, Elizabeth C. McKinney, Crystal Lyles Jackson, Clifton A. Baile, Robert J. Schmitz, Richard B. Meagher
Software Mentions: 1
Published: about 10 years ago

10.1016/j.toxlet.2020.10.008

Optimising testing strategies for classification of human health and environmental hazards – A proof-of-concept study
Cited by: 1
Author(s): Emilie Da Silva, Anders Baun, Elisabet Berggren, Andrew Worth
Software Mentions: 1
Published: over 5 years ago

10.3390/microorganisms9050990

Evaluation of a New Culture-Based AtbFinder Test-System Employing a Novel Nutrient Medium for the Selection of Optimal Antibiotics for Critically Ill Patients with Polymicrobial Infections within 4 h
Cited by: 4
Author(s): George Tetz, Victor Tetz
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pgen.1005602

Genomic Insights into the Ancestry and Demographic History of South America
Cited by: 186
Author(s): Julian R. Homburger, Andrés Moreno‐Estrada, Christopher R. Gignoux, Dominic Nelson, Elena Sánchez, Patricia A. Ortiz-Tello, Bernardo A. Pons-Estel, Eduardo Acevedo‐Vásquez, Pedro Miranda, Carl D. Langefeld, Simon Gravel, Marta E. Alarcón‐Riquelme, Carlos D. Bustamante
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pgen.1000928

Genome-Wide Association Study of Lp-PLA2 Activity and Mass in the Framingham Heart Study
Cited by: 71
Author(s): Sunil Suchindran, D Rivedal, John R. Guyton, Tom Milledge, Xiaoyi Gao, Ashlee M. Benjamin, Jennifer Rowell, Geoffrey S. Ginsburg, Jeanette McCarthy
Software Mentions: 1
Published: about 16 years ago

10.3389/fcimb.2021.644372

Transcriptional Responses of Beauveria bassiana Blastospores Cultured Under Varying Glucose Concentrations
Cited by: 6
Author(s): Gabriel Moura Mascarin, Natasha Sant′Anna Iwanicki, José Luis Ramı́rez, Ìtalo Delalibera, Christopher A. Dunlap
Software Mentions: 1
Published: about 5 years ago

10.3390/toxins9110369

Membrane-Active Properties of an Amphitropic Peptide from the CyaA Toxin Translocation Region
Cited by: 19
Author(s): Alexis Voegele, Orso Subrini, Nicolas Sapay, Daniel Ladant, Alexandre Chenal
Software Mentions: 1
Published: over 8 years ago

10.3390/toxins10080314

Accumulation and Biotransformation of Dinophysis Toxins by the Surf Clam Mesodesma donacium
Cited by: 23
Author(s): Juan Blanco, Gonzalo Álvarez, José Rengel, Rafael Manuel Jiménez Díaz, Carmen Mariño, Helena Martín, Eduardo Uribe
Software Mentions: 1
Published: almost 8 years ago

10.3390/microorganisms6030083

Exploring the Impact of the Biofloc Rearing System and an Oral WSSV Challenge on the Intestinal Bacteriome of Litopenaeus vannamei
Cited by: 38
Author(s): Mariana Rangel Pilotto, André Nicolau Aquime Gonçalves, Felipe N. Vieira, Walter Quadros Seifert, Evelyne Bachère, Rafael Diego Rosa, Luciane Maria Perazzolo
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0224664

Development of a quantitative PCR assay for the detection and enumeration of a potentially ciguatoxin-producing dinoflagellate, Gambierdiscus lapillus (Gonyaulacales, Dinophyceae)
Cited by: 15
Author(s): Anna Liza Kretzschmar, Arjun Verma, Gurjeet S. Kohli, Shauna A. Murray
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0103934

Improvement of Prediction Ability for Genomic Selection of Dairy Cattle by Including Dominance Effects
Cited by: 71
Author(s): Chuanyu Sun, P.M. VanRaden, J.B. Cole, Jeffrey R. O’Connell
Software Mentions: 1
Published: almost 12 years ago

10.3390/ijms22147578

Haplotype Analysis of BADH1 by Next-Generation Sequencing Reveals Association with Salt Tolerance in Rice during Domestication
Cited by: 8
Author(s): Myeong-Hyeon Min, Thant Zin Maung, Cheng Yuan, Rungnapa Phitaktansakul, Gang-Seob Lee, Sang-Ho Chu, Kyu‐Won Kim, Yong‐Jin Park
Software Mentions: 1
Published: almost 5 years ago

10.3390/brainsci11060704

The Association between Difficulties with Speech Fluency and Language Skills in a National Age Cohort of Children with Down Syndrome
Cited by: 3
Author(s): K Naess, Egil Nygaard, Hilde Hofslundsengen, J. Scott Yaruss
Software Mentions: 1
Published: about 5 years ago

10.3390/toxins11120727

Co-Occurrence of DON and Emerging Mycotoxins in Worldwide Finished Pig Feed and Their Combined Toxicity in Intestinal Cells
Cited by: 42
Author(s): Abdullah Khan Khoshal, Barbara Novak, Pascal G.P. Martin, Timothy Jenkins, Manon Neves, Gerd Schatzmayr, Isabelle P. Oswald, Philippe Pinton
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0237701

Evaluating the capacity of species distribution modeling to predict the geographic distribution of the mangrove community in Mexico
Cited by: 14
Author(s): Karla Rodríguez-Medina, Carlos Yáñez‐Arenas, A. Townsend Peterson, Jorge Euán Ávila, Jorge A. Herrera-Silveira
Software Mentions: 1
Published: almost 6 years ago

10.3390/toxins12050339

Diversity and Toxigenicity of Fungi that Cause Pineapple Fruitlet Core Rot
Cited by: 7
Author(s): Bastien Barral, Marc Chillet, Anna Doizy, Maeva Grassi, Laetitia Ragot, Mathieu Léchaudel, Noël Durand, Lindy Joy Rose, Altus Viljoen, Sabine Schorr‐Galindo
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0221689

Reference values for psychoacoustic tests on Polish school children 7–10 years old
Cited by: 5
Author(s): Elżbieta Włodarczyk, Agata Szkiełkowska, Henryk Skarżyńśki, Beata Miaśkiewicz, Henryk Skarżyńśki
Software Mentions: 1
Published: almost 7 years ago

10.3389/fimmu.2020.01174

Extracellular Vesicles Derived From Trichinella spiralis Muscle Larvae Ameliorate TNBS-Induced Colitis in Mice
Cited by: 39
Author(s): Yong Yang, Lei Liu, Xiaolei Liu, Yuanyuan Zhang, Hailian Shi, Wan‐Zhong Jia, Hongfei Zhu, Hong Peng Jia, Mingyuan Liu, Xue Bai
Software Mentions: 1
Published: almost 6 years ago

10.1007/s11682-016-9626-2

Associations between genetic risk, functional brain network organization and neuroticism
Cited by: 15
Author(s): Michelle N. Servaas, Linda Geerligs, Jojanneke A. Bastiaansen, Remco Renken, Jan-Bernard C Marsman, Ilja M. Nolte, Johan Ormel, André Alemán, Harriëtte Riese
Software Mentions: 1
Published: over 9 years ago

10.3390/toxins12110734

Single-Dose Toxicity of Individual and Combined Sterigmatocystin and 5-Methoxysterigmatocistin in Rat Lungs
Cited by: 4
Author(s): Daniela Jakšić, Ida Ćurtović, Domagoj Kifer, Dubravka Rašić, Nevenka Kopjar, Vedran Micek, Maja Peraica, Maja Šegvić Klarić
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pgen.1008315

Mutations in ARL2BP, a protein required for ciliary microtubule structure, cause syndromic male infertility in humans and mice
Cited by: 18
Author(s): Abigail R. Moye, Nicola Bedoni, Jessica G. Cunningham, Urikhan Sanzhaeva, Eric S. Tucker, Peter H. Mathers, Virginie G. Peter, Mathieu Quinodoz, Liliana P Paris, Luisa Coutinho Santos, Pedro Camacho, Madeleine G. Purcell, Abbie C. Winkelmann, James A. Foster, Elena N. Pugacheva, Carlo Rivolta, Visvanathan Ramamurthy
Software Mentions: 1
Published: almost 7 years ago

10.3390/nu12102908

Anti-Inflammatory Potential of Cow, Donkey and Goat Milk Extracellular Vesicles as Revealed by Metabolomic Profile
Cited by: 15
Author(s): Samanta Mecocci, Federica Gevi, Daniele Pietrucci, Luca Cavinato, Francesco R Luly, Luisa Pascucci, Stefano Petrini, Fiorentina Ascenzioni, Lello Zolla, Giovanni Chillemi, Katia Cappelli
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms21218218

Defining Metaniches in the Oral Cavity According to Their Microbial Composition and Cytokine Profile
Cited by: 15
Author(s): Corinna L Seidel, Roman G. Gerlach, Patrick Wiedemann, Matthias Weider, Gabriele Rodrian, Michael Häder, Benjamin Frey, Udo S. Gaipl, Aline Bözec, Fabian Cieplik, Christian Kirschneck, Christian Bogdan, Lina Gölz
Software Mentions: 1
Published: over 5 years ago

10.3390/nu12123636

Effects of High and Low Protein Diets on Inflammatory Profiles in People with Morbid Obesity: A 3-Week Intervention Study
Cited by: 11
Author(s): Liselot Koelman, Mariya Markova, Nicole Seebeck, Silke Hornemann, Anke Rosenthal, Volker Lange, Olga Pivovarova-Ramich, Krasimira Aleksandrova
Software Mentions: 1
Published: over 5 years ago

10.1186/s13073-019-0706-y

Genomic surveillance for hypervirulence and multi-drug resistance in invasive Klebsiella pneumoniae from South and Southeast Asia
Cited by: 150
Author(s): Kelly L. Wyres, To Nguyen Thi Nguyen, Margaret M C Lam, Louise M. Judd, Nguyễn Văn Vĩnh Châu, David A. B. Dance, Margaret Ip, Abhilasha Karkey, Clare Ling, Thyl Miliya, Paul N. Newton, Nguyen Phu Huong Lan, Amphone Sengduangphachanh, Paul Turner, Balaji Veeraraghavan, Phat Voong Vinh, Manivanh Vongsouvath, Nicholas R. Thomson, Stephen Baker, Kathryn E. Holt
Software Mentions: 1
Published: over 6 years ago

10.1002/ece3.7055

DNA metabarcoding provides insights into seasonal diet variations in Chinese mole shrew ( Anourosorex squamipes ) with potential implications for evaluating crop impacts
Cited by: 8
Author(s): Keyi Tang, Fei Xie, Hong‐yi Liu, Yingting Pu, Dan Chen, Boxin Qin, Chengxin Fu, Qiong Wang, Shunde Chen, Keji Guo
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pgen.1006908

The nucleoid occlusion factor Noc controls DNA replication initiation in Staphylococcus aureus
Cited by: 40
Author(s): Ting Pang, Xindan Wang, Hoong Chuin Lim, Thomas G. Bernhardt, David Z. Rudner
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pgen.1007512

Discovery of a dual protease mechanism that promotes DNA damage checkpoint recovery
Cited by: 16
Author(s): Peter E. Burby, Zackary W. Simmons, Jeremy W. Schroeder, Lyle A. Simmons
Software Mentions: 1
Published: almost 8 years ago

10.1186/s13073-018-0587-5

Tracking key virulence loci encoding aerobactin and salmochelin siderophore synthesis in Klebsiella pneumoniae
Cited by: 129
Author(s): Margaret M C Lam, Kelly L. Wyres, Louise M. Judd, Ryan R. Wick, Adam Jenney, Sylvain Brisse, Kathryn E. Holt
Software Mentions: 1
Published: over 7 years ago

10.1093/tas/txab033

High-throughput genotype-based population structure analysis of selected buffalo breeds
Cited by: 3
Author(s): Prakash B Thakor, Ankit T. Hinsu, Dhruv Bhatia, Tejas Shah, Nilesh Nayee, A Sudhakar, D. N. Rank, Chaitanya Joshi
Software Mentions: 1
Published: about 5 years ago

10.1186/s13073-018-0585-7

Genotype effects contribute to variation in longitudinal methylome patterns in older people
Cited by: 36
Author(s): Qian Zhang, Riccardo E. Marioni, Matthew R. Robinson, Jonathan Higham, Duncan Sproul, Naomi R. Wray, Ian J. Deary, Allan F. McRae, Peter M. Visscher
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0148266

Simvastatin Sodium Salt and Fluvastatin Interact with Human Gap Junction Gamma-3 Protein
Cited by: 3
Author(s): Andrew Marsh, Katherine Casey-Green, Fay Probert, David M. Withall, Daniel A. Mitchell, Suzanne J. Dilly, Sean James, Wade R. Dimitri, Sweta Ladwa, Paul C. Taylor, Donald R. J. Singer
Software Mentions: 1
Published: over 10 years ago

10.3389/fimmu.2020.608696

Distinguishing Sepsis From Infection by Neutrophil Dysfunction: A Promising Role of CXCR2 Surface Level
Cited by: 14
Author(s): Chutima Seree-aphinan, Polathep Vichitkunakorn, Raphatphorn Navakanitworakul, Bodin Khwannimit
Software Mentions: 1
Published: over 5 years ago

10.1016/j.tranon.2018.08.006

Somatic TP53 Mutations Are Detectable in Circulating Tumor DNA from Children with Anaplastic Wilms Tumors
Cited by: 20
Author(s): Taryn D. Treger, Tasnim Chagtai, Robert Butcher, George D Cresswell, Reem Al‐Saadi, Jesper Brok, Richard D. Williams, Chrissy h. Roberts, Nicholas M. Luscombe, Kathy Pritchard‐Jones, William Mifsud
Software Mentions: 1
Published: over 7 years ago

10.1038/tp.2014.127

Plasma lipidomics analysis finds long chain cholesteryl esters to be associated with Alzheimer’s disease
Cited by: 100
Author(s): Petroula Proitsi, M Kim, Luke Whiley, Megan Pritchard, Rufina Leung, Hilkka Soininen, Iwona Kłoszewska, Patrizia Mecocci, Magda Tsolaki, Bruno Vellas, Pak C. Sham, Simon Lovestone, John Powell, Richard Dobson, Cristina Legido‐Quigley
Software Mentions: 1
Published: over 11 years ago

10.3389/fimmu.2021.600979

Tenascin-C Deficiency Is Associated With Reduced Bacterial Outgrowth During Klebsiella pneumoniae-Evoked Pneumosepsis in Mice
Cited by: 9
Author(s): Mariska T. Meijer, Alex F. de Vos, Brendon P. Scicluna, Joris J T H Roelofs, Cherine Abou-Fayçal, Gertraud Orend, Fabrice Uhel, Tom van der Poll
Software Mentions: 1
Published: about 5 years ago

10.1042/BSR20190482

High-throughput sequencing analysis of genes encoding the B-lymphocyte receptor heavy-chain CDR3 in renal and peripheral blood of IgA nephropathy
Cited by: 4
Author(s): Dapeng Chen, Zheng Zhang, Yue Yang, Quan Hong, Wenge Li, Zhuo Li
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pgen.1007886

Narya, a RING finger domain-containing protein, is required for meiotic DNA double-strand break formation and crossover maturation in Drosophila melanogaster
Cited by: 8
Author(s): Cathleen M. Lake, Rachel J. Nielsen, Amanda M. Bonner, Salam Eche, Sanese Kania White-Brown, Kim S. McKim, R. Scott Hawley
Software Mentions: 1
Published: over 7 years ago

10.3389/fcimb.2020.598938

The Lung Microbiome of Three Young Brazilian Patients With Cystic Fibrosis Colonized by Fungi
Cited by: 7
Author(s): Otávio Guilherme Gonçalves de Almeida, Carolina Paulino da Costa Capizzani, Ludmilla Tonani, Patrícia Helena Grizante Barião, Anderson Ferreira da Cunha, Elaine Cristina Pereira De Martinis, Lídia Alice Gomes Monteiro Marin Torres, Márcia Regina von Zeska Kress
Software Mentions: 1
Published: over 5 years ago

10.3389/fcimb.2020.00419

The Salmonella Effector SseK3 Targets Small Rab GTPases
Cited by: 16
Author(s): Jiyao Gan, Nichollas E. Scott, Joshua Patrick Mark Newson, Rachelia R Wibawa, Tania Wong Fok Lung, Georgina L. Pollock, Garrett Z. Ng, Ian R. van Driel, Jaclyn S. Pearson, Elizabeth L. Hartland, Cristina Giogha
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0178274

Reprimo tissue-specific expression pattern is conserved between zebrafish and human
Cited by: 9
Author(s): Ricardo J. Figueroa, Gonzalo Carrasco-Aviño, Ignacio A. Wichmann, Martin Lange, Gareth I. Owen, Arndt F. Siekmann, Alejandro Corvalán, Juan C. Opazo, Julio D. Amigo
Software Mentions: 1
Published: about 9 years ago

10.1038/s41398-020-00931-1

Testing relationships between multimodal modes of brain structural variation and age, sex and polygenic scores for neuroticism in children and adolescents
Cited by: 3
Author(s): Linn B. Norbom, Jaroslav Rokicki, Dennis van der Meer, Dag Alnæs, null Nhat Trung Doan, Torgeir Moberget, Tobias Kaufmann, Ole A. Andreassen, Lars T. Westlye, Christian K. Tamnes
Software Mentions: 1
Published: almost 6 years ago

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Papers Mentioning ggplot2 11,441