cran: ggplot2 | Projects | Ecosyste.ms: Papers

10.1128/mBio.02311-16

Nonselective Bottlenecks Control the Divergence and Diversification of Phase-Variable Bacterial Populations
Cited by: 13
Author(s): Jack Aidley, Shweta Rajopadhye, Nwanekka M. Akinyemi, Lea Lango-Scholey, Michael A. Jones, Christopher D. Bayliss
Software Mentions: 1
Published: over 9 years ago

10.1016/j.csbj.2020.04.004

Drug repositioning or target repositioning: A structural perspective of drug-target-indication relationship for available repurposed drugs
Cited by: 36
Author(s): Daniele Parisi, Melissa F. Adasme, А. Н. Свешникова, Sarah Naomi Bolz, Yves Moreau, Michael Schroeder
Software Mentions: 1
Published: over 6 years ago

10.3389/fcimb.2021.598672

The Fecal Microbiota Is Already Altered in Normoglycemic Individuals Who Go on to Have Type 2 Diabetes
Cited by: 22
Author(s): Li Wang, Xuefeng Yu, Xiaoqiang Xu, Jie Ming, Zhifeng Wang, Bin Gao, Ying Xing, Jie Zhou, Jianfang Fu, Tao Liu, Xiangyang Li, Malgorzata Garstka, Xiaokai Wang, Qiuhe Ji
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-018-32693-8

Reconstructing the evolutionary history of pandemic foot-and-mouth disease viruses: the impact of recombination within the emerging O/ME-SA/Ind-2001 lineage
Cited by: 52
Author(s): Katarzyna Bachanek‐Bankowska, Antonello Di Nardo, Jemma Wadsworth, Valérie Mioulet, Giulia Pezzoni, Santina Grazioli, Emiliana Brocchi, Sharmila Chapagain Kafle, Ranjani Hettiarachchi, Pradeep Lakpriya Kumarawadu, Ibrahim Eldaghayes, Abdunaser Dayhum, Deodass Meenowa, Soufien Sghaier, Hafsa Madani, Nabil Abouchoaib, Bui H. Hoang, Pham P. Vu, Kinzang Dukpa, Ratna B. Gurung, Sangay Tenzin, Ulrich Wernery, Alongkorn Panthumart, Kingkarn Boonsuya Seeyo, Wilai Linchongsubongkoch, Anthony Relmy, Labib Bakkali‐Kassimi, A. V. Scherbakov, Donald P. King, Nick J. Knowles
Software Mentions: 1
Published: almost 8 years ago

10.1002/ece3.6555

Evolution and maintenance of microbe‐mediated protection under occasional pathogen infection
Cited by: 4
Author(s): Anke Kloock, Michael B. Bonsall, Kayla C. King
Software Mentions: 1
Published: about 6 years ago

10.3390/microorganisms9030507

Microbial Communities of Meat and Meat Products: An Exploratory Analysis of the Product Quality and Safety at Selected Enterprises in South Africa
Cited by: 16
Author(s): Evelyn Madoroba, Kudakwashe Magwedere, Nyaradzo Stella Chaora, Itumeleng Matle, Farai C. Muchadeyi, Masenyabu Mathole, Rian Pierneef
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2020.539540

Analyses of the Bacterial Contamination on Belgian Broiler Carcasses at Retail Level
Cited by: 8
Author(s): Yining Zhu, Marie Joossens, Kurt Houf
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-018-33357-3

Placental FKBP51 mediates a link between second trimester maternal anxiety and birthweight in female infants
Cited by: 10
Author(s): Katie L. Togher, Gerard W. O’Keeffe, Ali S. Khashan, Gerard Clarke, Louise C. Kenny
Software Mentions: 1
Published: almost 8 years ago

10.1186/s12874-016-0241-0

www.common-metrics.org: a web application to estimate scores from different patient-reported outcome measures on a common scale
Cited by: 17
Author(s): Felix Fischer, Matthias Rose
Software Mentions: 1
Published: almost 10 years ago

10.1038/s41598-018-33525-5

E-cadherin loss induces targetable autocrine activation of growth factor signalling in lobular breast cancer
Cited by: 53
Author(s): K.L. Teo, Laura Gómez-Cuadrado, Milou Tenhagen, Adam Byron, Max A K Rätze, Miranda van Amersfoort, Jojanneke Renes, Eric Strengman, Amit Mandoli, Abhishek A. Singh, Joost H.A. Martens, Hendrik G. Stunnenberg, Paul J. van Diest, Valerie G. Brunton, Patrick W.B. Derksen
Software Mentions: 1
Published: almost 8 years ago

10.3390/nu5093352

Association between Subcutaneous White Adipose Tissue and Serum 25-Hydroxyvitamin D in Overweight and Obese Adults
Cited by: 37
Author(s): Brian D. Piccolo, Gregory G. Dolnikowski, Elias Seyoum, Anthony P. Thomas, Erik Gertz, Elisabete Abib Pedroso de Souza, Leslie R. Woodhouse, John W. Newman, Nancy L. Keim, Sean H. Adams, Marta D. Van Loan
Software Mentions: 1
Published: almost 13 years ago

10.1186/s40168-021-01084-z

Linking genomic and physiological characteristics of psychrophilic Arthrobacter to metagenomic data to explain global environmental distribution
Cited by: 7
Author(s): Liang Shen, Yongqin Liu, Michelle A. Allen, Bin Xu, Ninglian Wang, Timothy J. Williams, Feng Wang, Yu‐Guang Zhou, Qing Liu, Ricardo Cavicchioli
Software Mentions: 1
Published: about 5 years ago

10.2196/16767

Translating the Burden of Pollen Allergy Into Numbers: 10-Year Observational Study of Electronically Generated Symptom Data From the Patient’s Hayfever Diary in Austria and Germany
Cited by: 25
Author(s): Katharina Bastl, Maximilian Bastl, Karl‐Christian Bergmann, Markus Berger, Uwe Berger
Software Mentions: 1
Published: over 6 years ago

10.18632/oncotarget.12705

ALK FISH patterns and the detection of ALK fusions by next generation sequencing in lung adenocarcinoma
Cited by: 58
Author(s): Sanja Đačić, Liza C. Villaruz, Shira Abberbock, Alyssa L. Mahaffey, Pimpin Incharoen, Marina N. Nikiforova
Software Mentions: 1
Published: almost 10 years ago

10.1186/s12874-018-0559-x

Appropriate statistical methods for analysing partially nested randomised controlled trials with continuous outcomes: a simulation study
Cited by: 28
Author(s): Jane Candlish, M. Dawn Teare, Munyaradzi Dimairo, Laura Flight, Laura Mandefield, Stephen J. Walters
Software Mentions: 1
Published: almost 8 years ago

10.3389/fmicb.2021.648915

Repulsive Guidance Molecule b Deficiency Induces Gut Microbiota Dysbiosis and Increases the Susceptibility to Intestinal Inflammation in Mice
Cited by: 11
Author(s): Ying Shi, Lina Zhong, Yuting Li, Yanfang Chen, Shufen Feng, Min Wang, Yin Xia, Shaohui Tang
Software Mentions: 1
Published: over 5 years ago

10.1007/s00248-017-0996-9

An 18S rRNA Workflow for Characterizing Protists in Sewage, with a Focus on Zoonotic Trichomonads
Cited by: 30
Author(s): Julia M. Maritz, Krysta H. Rogers, Tara M. Rock, Nicole Liu, Susan Joseph, Kirkwood M. Land, Jane M. Carlton
Software Mentions: 1
Published: about 9 years ago

10.1186/s12874-019-0839-0

Multi-cohort modeling strategies for scalable globally accessible prostate cancer risk tools
Cited by: 5
Author(s): Johanna Tolksdorf, Michael W. Kattan, Stephen A. Boorjian, Stephen J. Freedland, Karim Saba, Cédric Poyet, Lourdes Guerrios-Rivera, Amanda M. De Hoedt, Michael A. Liss, Robin J. Leach, Javier Hernández, Emily Vertosick, Andrew Vickers, Donna P. Ankerst
Software Mentions: 1
Published: almost 7 years ago

10.3389/fcimb.2021.644372

Transcriptional Responses of Beauveria bassiana Blastospores Cultured Under Varying Glucose Concentrations
Cited by: 6
Author(s): Gabriel Moura Mascarin, Natasha Sant′Anna Iwanicki, José Luis Ramı́rez, Ìtalo Delalibera, Christopher A. Dunlap
Software Mentions: 1
Published: over 5 years ago

10.1007/s00248-020-01586-7

16S rRNA Gene Copy Number Normalization Does Not Provide More Reliable Conclusions in Metataxonomic Surveys
Cited by: 40
Author(s): Robert M. Starke, Victor Satler Pylro, Daniel Morais
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-018-35460-x

The timing and widespread effects of the largest Holocene volcanic eruption in Antarctica
Cited by: 36
Author(s): Dermot Antoniades, Santiago Giralt, Adelina Geyer, Antonio M. Álvarez‐Valero, Sergi Pla-Rabés, Ignacio Granados, Emma Liu, Manuel Toro, John L. Smellie, Marc Oliva
Software Mentions: 1
Published: over 7 years ago

10.1186/1475-2859-12-72

Metabolic engineering of Bacillus subtilis for growth on overflow metabolites
Cited by: 37
Author(s): Johannes Kabisch, Isabel Pratzka, Hanna Meyer, Dirk Albrecht, Michael Lalk, Armin Ehrenreich, Thomas Schweder
Software Mentions: 1
Published: about 13 years ago

10.1038/s41598-018-35834-1

Dorsolateral and medial prefrontal cortex mediate the influence of incidental priming on economic decision making in obesity
Cited by: 18
Author(s): Filip Morys, Stefan Bode, Annette Horstmann
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-018-33252-x

The proton and metal binding sites responsible for the pH-dependent green-red bioluminescence color tuning in firefly luciferases
Cited by: 12
Author(s): Vadim R. Viviani, Gabriele Verônica de Mello Gabriel, Vanessa R. Bevilaqua, A. Simões, Takashi Hirano, Paulo Sérgio Lopes-de-Oliveira
Software Mentions: 1
Published: over 7 years ago

10.18632/aging.202136

Influence of aging on deterioration of patients with COVID-19
Cited by: 9
Author(s): Limin Pang, Yi Liu, Maoze Shen, Jujian Ye, Ruirong Chen, Zhien Lan, Zhijian Wu, Yang Guo, Peidong Zhang
Software Mentions: 1
Published: over 5 years ago

10.2196/27824

Informing Patients With Esophagogastric Cancer About Treatment Outcomes by Using a Web-Based Tool and Training: Development and Evaluation Study
Cited by: 6
Author(s): Loïs F van de Water, Héctor G. van den Boorn, Florian Hoxha, Inge Henselmans, Mart M Calff, Mirjam A. G. Sprangers, Ameen Abu‐Hanna, Ellen M. A. Smets
Software Mentions: 1
Published: almost 5 years ago

10.3389/fcimb.2020.598938

The Lung Microbiome of Three Young Brazilian Patients With Cystic Fibrosis Colonized by Fungi
Cited by: 7
Author(s): Otávio Guilherme Gonçalves de Almeida, Carolina Paulino da Costa Capizzani, Ludmilla Tonani, Patrícia Helena Grizante Barião, Anderson Ferreira da Cunha, Elaine Cristina Pereira De Martinis, Lídia Alice Gomes Monteiro Marin Torres, Márcia Regina von Zeska Kress
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-018-36248-9

The impact of cigarette smoke exposure, COPD, or asthma status on ABC transporter gene expression in human airway epithelial cells
Cited by: 31
Author(s): Jennifer A. Aguiar, Andrea Tamminga, Briallen Lobb, Ryan D. Huff, Julie T. Nguyen, Yechan Kim, Anna Dvorkin‐Gheva, Martin R. Stämpfli, Andrew C. Doxey, Jeremy A. Hirota
Software Mentions: 1
Published: over 7 years ago

10.1128/mBio.02716-18

The Polar Organizing Protein PopZ Is Fundamental for Proper Cell Division and Segregation of Cellular Content in Magnetospirillum gryphiswaldense
Cited by: 16
Author(s): Daniel Pfeiffer, Mauricio Toro-Nahuelpan, Marc Bramkamp, Jürgen M. Plitzko, Dirk Schüler
Software Mentions: 1
Published: over 7 years ago

10.18632/aging.202406

Modeling paraquat-induced lung fibrosis in C. elegans reveals KRIT1 as a key regulator of collagen gene transcription
Cited by: 5
Author(s): Guanghui Deng, Le Li, Yan‐Qiong Ouyang
Software Mentions: 1
Published: over 5 years ago

10.1186/s12934-021-01589-0

Evaluation of fecal microbiota transplantation in Parkinson's disease patients with constipation
Cited by: 62
Author(s): Xiaoyi Kuai, Xiaohan Yao, Lijuan Xu, Yuqing Zhou, Liping Zhang, Yi Liu, Shaofang Pei, Chunli Zhou
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-018-36188-4

Deciphering the evolution of Deception Island’s magmatic system
Cited by: 28
Author(s): Adelina Geyer, Antonio M. Álvarez‐Valero, Guillem Gisbert, M. Aulinas, Daniel Hernández-Barreña, Agustín Lobo, Joan Martı́
Software Mentions: 1
Published: over 7 years ago

10.3390/nu13082688

Flavonoid-Modifying Capabilities of the Human Gut Microbiome—An In Silico Study
Cited by: 17
Author(s): Tobias Goris, Rafael R. C. Cuadrat, Annett Braune
Software Mentions: 1
Published: about 5 years ago

10.1016/j.csbj.2019.03.001

Evolution of Genomic Base Composition: From Single Cell Microbes to Multicellular Animals
Cited by: 24
Author(s): Jon Bohlin, John H.‐O. Pettersson
Software Mentions: 1
Published: over 7 years ago

10.1155/2021/8899274

Proteomic Analysis Revealed the Characteristics of Key Proteins Involved in the Regulation of Inflammatory Response, Leukocyte Transendothelial Migration, Phagocytosis, and Immune Process during Early Lung Blast Injury
Cited by: 4
Author(s): Yunen Liu, Changci Tong, Peifang Cong, Ying Liu, Xiuyun Shi, Lin Shi, Shun Mao, Yan Zhao, Hongxu Jin, Mingxiao Hou
Software Mentions: 1
Published: over 5 years ago

10.1128/mBio.01224-19

Investigation of Genetic Susceptibility to Blastomycosis Reveals Interleukin-6 as a Potential Susceptibility Locus
Cited by: 30
Author(s): Richard M. Merkhofer, Mary O’Neill, Donny Xiong, Nydiaris Hernández-Santos, Hannah E. Dobson, J. Scott Fites, Abigail C. Shockey, Marcel Wuethrich, Caitlin S. Pepperell, Bruce S. Klein
Software Mentions: 1
Published: about 7 years ago

10.3389/fmicb.2017.00770

Microbial Population Dynamics and Ecosystem Functions of Anoxic/Aerobic Granular Sludge in Sequencing Batch Reactors Operated at Different Organic Loading Rates
Cited by: 104
Author(s): Enikö Barbara Szabo, Raquel Liébana, Malte Hermansson, Oskar Modin, Frank Persson, Britt‐Marie Wilén
Software Mentions: 1
Published: over 9 years ago

10.1186/s40478-021-01233-3

Predictors of cognitive impairment in primary age-related tauopathy: an autopsy study
Cited by: 25
Author(s): Megan A. Iida, Kurt Farrell, Jamie M. Walker, Timothy E. Richardson, Gabriel A. Marx, Clare Bryce, Dushyant P. Purohit, Gai Ayalon, Thomas G. Beach, Eileen H. Bigio, Etty Cortés, Marla Gearing, Vahram Haroutunian, Corey T. McMillan, Edward B. Lee, Dennis W. Dickson, Ann C. McKee, Thor D. Stein, John Q. Trojanowski, Randall L. Woltjer, Gábor G. Kovács, Julia Kofler, Jeffrey Kaye, Charles L. White, John F. Crary
Software Mentions: 1
Published: about 5 years ago

10.3389/fmicb.2016.01767

Differential Localization of Chemotactic Signaling Arrays during the Lifecycle of Vibrio parahaemolyticus
Cited by: 14
Author(s): Jan Heering, Simon Ringgaard
Software Mentions: 1
Published: almost 10 years ago

10.1038/s41598-018-37768-0

Bioinformatics Analysis of Metabolism Pathways of Archaeal Energy Reserves
Cited by: 22
Author(s): Liang Wang, Qinghua Liu, Xiang Wu, Yue Huang, Michael J. Wise, Zhanzhong Liu, Wei Wang, Jian Hu, Qianqian Wang
Software Mentions: 1
Published: over 7 years ago

10.1093/infdis/jiz691

Trachoma Prevalence After Discontinuation of Mass Azithromycin Distribution
Cited by: 12
Author(s): William W Godwin, Joaquín M. Prada, Paul M. Emerson, Pamela J. Hooper, Ana Bakhtiari, Michael Deiner, Travis C. Porco, Hamidah Mahmud, Emma Landskroner, T. Déirdre Hollingsworth, Graham F. Medley, Amy Pinsent, Robin L. Bailey, Thomas M. Lietman, Catherine E. Oldenburg
Software Mentions: 1
Published: over 6 years ago

10.1186/s12920-018-0354-x

HLA and proteasome expression body map
Cited by: 67
Author(s): Sebastian Boegel, Martin Löwer, Thomas Bukur, Patrick Sorn, John C. Castle, Uğur Şahin
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-018-38274-z

IPSE, a urogenital parasite-derived immunomodulatory protein, ameliorates ifosfamide-induced hemorrhagic cystitis through downregulation of pro-inflammatory pathways
Cited by: 15
Author(s): Evaristus C. Mbanefo, Liu Le, Rebecca Zee, Nirad Banskota, Kenji Ishida, Luke F. Pennington, Justin I. Odegaard, Theodore S. Jardetzky, Abdulaziz Alouffi, Franco H. Falcone, Michael H. Hsieh
Software Mentions: 1
Published: over 7 years ago

10.1016/j.mex.2020.100977

Optimizing pollencounter for high throughput phenotyping of pollen quality in tomatoes
Cited by: 4
Author(s): Mathieu Anatole Tele Ayenan, Agyemang Danquah, Charles Ampomah‐Dwamena, Peter Hanson, Isaac Asante, Eric Danquah
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-019-38538-2

The genetic and epigenetic association of LDL Receptor Related Protein 1B (LRP1B) gene with childhood obesity
Cited by: 7
Author(s): Suman Lee
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-018-38127-9

In-Depth Characterization of Monocyte-Derived Macrophages using a Mass Cytometry-Based Phagocytosis Assay
Cited by: 101
Author(s): Daniel Schulz, Yannik Severin, Vito Riccardo Tomaso Zanotelli, Bernd Bodenmiller
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-019-38713-5

Urinary proteome signature of Renal Cysts and Diabetes syndrome in children
Cited by: 15
Author(s): P Ricci, Pedro Magalhães, Magdalena Krochmal, Martin Pejchinovski, Erica Daina, Maria Rosa Caruso, Laura Goea, Iwona Belczacka, Giuseppe Remuzzi, Muriel Umbhauer, Jens Drube, Lars Pape, Harald Mischak, Stéphane Decramer, Franz Schaefer, Joost P. Schanstra, Silvia Cereghini, Petra Zürbig
Software Mentions: 1
Published: over 7 years ago

10.2196/24925

Short-Range Forecasting of COVID-19 During Early Onset at County, Health District, and State Geographic Levels Using Seven Methods: Comparative Forecasting Study
Cited by: 18
Author(s): Christopher J. Lynch, Ross Gore
Software Mentions: 1
Published: over 5 years ago

10.1128/mBio.01678-19

A Protein Antagonist of Activation-Induced Cytidine Deaminase Encoded by a Complex Mouse Retrovirus
Cited by: 8
Author(s): Gurvani B. Singh, Hyewon Byun, Almas F. Ali, Frank Medina, Dennis Wylie, Haridha Shivram, Andrea K. Nash, Mary M. Lozano, Jaquelin P. Dudley
Software Mentions: 1
Published: almost 7 years ago

10.3389/fnut.2020.594850

The Gut Microbiome and Abiotic Factors as Potential Determinants of Postprandial Glucose Responses: A Single-Arm Meal Study
Cited by: 5
Author(s): Nathalie Nestel, Josephine D. Hvass, Martin Iain Bahl, Lars Bolvig Hansen, Łukasz Krych, Dennis Sandris Nielsen, Lars Ove Dragsted, Henrik Munch Roager
Software Mentions: 1
Published: over 5 years ago

10.1016/j.mex.2019.12.004

MITAS: A model for assessing the time-dependent risk of sequential applications of pesticides for soil organisms by consideration of exposure, degradation and mixture toxicity
Cited by: 1
Author(s): Alexandra Sybertz, Martina Roß-Nickoll, Andreas Schäffer, Björn Scholz-Starke, Benjamin Daniels, Andreas Schäffer
Software Mentions: 1
Published: over 6 years ago

10.1080/19420889.2020.1812865

New insights into the limited thermotolerance of anhydrobiotic tardigrades
Cited by: 4
Author(s): Ricardo Cardoso Neves, Robyn M. Stuart, Nadja Møbjerg
Software Mentions: 1
Published: over 6 years ago

10.3390/mps4030050

A Multistep Workflow to Evaluate Newly Generated iPSCs and Their Ability to Generate Different Cell Types
Cited by: 29
Author(s): Carol X.-Q. Chen, Narges Abdian, Gilles Maussion, Rhalena A. Thomas, Iveta Demirova, Eddie Cai, Mahdieh Tabatabaei, Lenore K. Beitel, Jason Karamchandani, Edward A. Fon, Thomas M. Durcan
Software Mentions: 1
Published: about 5 years ago

10.1128/mBio.01516-19

Hydrodynamic Shape Changes Underpin Nuclear Rerouting in Branched Hyphae of an Oomycete Pathogen
Cited by: 5
Author(s): Édouard Evangelisti, Liron Shenhav, T. S. Yunusov, Marie Le Naour—Vernet, Philipp Rink, Sebastián Schornack
Software Mentions: 1
Published: almost 7 years ago

10.3390/mps2030062

Robust Normalization of Luciferase Reporter Data
Cited by: 5
Author(s): Andrea Repele, Manu Manu
Software Mentions: 1
Published: about 7 years ago

10.1128/mBio.02321-19

Identification of Key Determinants of Staphylococcus aureus Vaginal Colonization
Cited by: 28
Author(s): Liwen Deng, Katrin Schilcher, Lindsey R. Burcham, Jakub Kwieciński, Paige Johnson, Steven R. Head, David E. Heinrichs, Alexander R. Horswill, Kelly S. Doran
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-019-39620-5

Levels of Systemic Low-grade Inflammation in Pregnant Mothers and Their Offspring are Correlated
Cited by: 33
Author(s): Nadia R. Fink, Bo Chawes, Klaus Bønnelykke, Jonathan Thorsen, Jakob Stokholm, Morten Arendt Rasmussen, Susanne Brix, Hans Bisgaard
Software Mentions: 1
Published: over 7 years ago

10.1007/s11306-018-1388-y

Metabolomics reveals immunomodulation as a possible mechanism for the antibiotic effect of Persicaria capitata (Buch.-Ham. ex D. Don) H.Gross
Cited by: 6
Author(s): Pei Han, Yong Huang, Yumin Xie, Weichun Yang, Xiang Wenying, Peter J. Hylands, Cristina Legido‐Quigley
Software Mentions: 1
Published: about 8 years ago

10.1186/s12881-020-01089-9

Mutant POLQ and POLZ/REV3L DNA polymerases may contribute to the favorable survival of patients with tumors with POLE mutations outside the exonuclease domain
Cited by: 2
Author(s): Fangjin Huang, Hisashi Tanaka, Beatrice S. Knudsen, Joanne L. Rutgers
Software Mentions: 1
Published: almost 6 years ago

10.1186/1471-2350-11-9

Impact of gene variants on sex-specific regulation of human Scavenger receptor class B type 1 (SR-BI) expression in liver and association with lipid levels in a population-based study
Cited by: 28
Author(s): Ornit Chiba‐Falek, Marshall Nichols, Sunil Suchindran, John R. Guyton, Geoffrey S. Ginsburg, Elizabeth Barrett‐Connor, Jeanette McCarthy
Software Mentions: 1
Published: over 16 years ago

10.1128/mBio.03243-19

Influenza Virus Infection Induces a Narrow Antibody Response in Children but a Broad Recall Response in Adults
Cited by: 46
Author(s): Philip Meade, Guillermina Kuan, Shirin Strohmeier, Hannah E. Maier, Fatima Amanat, Ángel Balmaseda, Kimihito Ito, Ericka Kirkpatrick, Andres Javier, Lionel Gresh, Raffael Nachbagauer, Aubree Gordon, Florian Krammer
Software Mentions: 1
Published: over 6 years ago

10.1186/s12881-019-0909-5

Copy number variation is highly correlated with differential gene expression: a pan-cancer study
Cited by: 151
Author(s): Xin Shao, Ning Lv, Jie Liao, Jinbo Long, Rui Xue, Ai Ni, Donghang Xu, Xiaohui Fan
Software Mentions: 1
Published: almost 7 years ago

10.1007/s11306-016-1104-8

Removing the bottlenecks of cell culture metabolomics: fast normalization procedure, correlation of metabolites to cell number, and impact of the cell harvesting method
Cited by: 55
Author(s): Caroline Muschet, Gabriele Möller, Cornelia Prehn, Martin Hrabé de Angelis, Jerzy Adamski, Janina Tokarz
Software Mentions: 1
Published: almost 10 years ago

10.1186/s12909-021-02576-0

Willingness to volunteer and readiness to practice of undergraduate medical students during the COVID-19 pandemic: a cross-sectional survey in Indonesia
Cited by: 39
Author(s): Gilbert Lazarus, Ardi Findyartini, Azis Muhammad Putera, Nico Gamalliel, David Nugraha, Imam Adli, Jason Phowira, Lyanna Azzahra, Bagas Ariffandi, Indah Suci Widyahening
Software Mentions: 1
Published: over 5 years ago

10.1007/s11306-021-01806-2

Differential insulin sensitivity of NMR-based metabolomic measures in a two-step hyperinsulinemic euglycemic clamp study
Cited by: 0
Author(s): Wenyi Wang, Ko Willems van Dijk, Carolien A. Wijsman, Maarten P. Rozing, Simon P. Mooijaart, Marian Beekman, P. Eline Slagboom, J. Wouter Jukema, Raymond Noordam, Diana van Heemst
Software Mentions: 1
Published: about 5 years ago

10.1007/s11306-020-01740-9

Glycerophospholipid and detoxification pathways associated with small for gestation age pathophysiology: discovery metabolomics analysis in the SCOPE cohort
Cited by: 6
Author(s): Aude-Claire Morillon, Débora Farias Batista Leite, Shirish Yakkundi, Lee A. Gethings, Grace Thomas, Philip N. Baker, Louise C. Kenny, James English, Fergus P. McCarthy
Software Mentions: 1
Published: over 5 years ago

10.1186/s12909-018-1331-y

The Next Generation Scientist program: capacity-building for future scientific leaders in low- and middle-income countries
Cited by: 16
Author(s): Goonaseelan Pillai, Kelly Chibale, Edwin C. Constable, Akiko Nathalie Keller, Marcelo M. Gutierrez, Fareed Mirza, Christian Sengstag, Collen Masimirembwa, Paolo Denti, Gary Maartens, Michèle Ramsay, Bernhards Ogutu, Eyasu Makonnen, Richard K. Gordon, Carlos Gil Ferreira, F.A. Goldbaum, Wim Degrave, J. Michael Spector, Brigitta Tadmor, Hedwig J. Kaiser
Software Mentions: 1
Published: almost 8 years ago

10.3389/fcimb.2020.00419

The Salmonella Effector SseK3 Targets Small Rab GTPases
Cited by: 16
Author(s): Jiyao Gan, Nichollas E. Scott, Joshua Patrick Mark Newson, Rachelia R Wibawa, Tania Wong Fok Lung, Georgina L. Pollock, Garrett Z. Ng, Ian R. van Driel, Jaclyn S. Pearson, Elizabeth L. Hartland, Cristina Giogha
Software Mentions: 1
Published: about 6 years ago

10.1007/s11306-019-1484-7

Metabolomic and lipidomic assessment of the metabolic syndrome in Dutch middle-aged individuals reveals novel biological signatures separating health and disease
Cited by: 36
Author(s): Izabella Surowiec, Raymond Noordam, Kate Bennett, Marian Beekman, P. Eline Slagboom, Torbjörn Lundstedt, Diana van Heemst
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-019-41455-z

Acoustic recordings provide detailed information regarding the behavior of cryptic wildlife to support conservation translocations
Cited by: 4
Author(s): Xiao Qing Yan, Hemin Zhang, Desheng Li, Daifu Wu, Shuiqin Zhou, Min Sun, Haiping Hu, Xiaoqiang Liu, Shijie Mou, Shengshan He, Megan A. Owen, Yan Huang
Software Mentions: 1
Published: over 7 years ago

10.1038/s42003-021-01803-0

smiFISH and embryo segmentation for single-cell multi-gene RNA quantification in arthropods
Cited by: 19
Author(s): Llilians Calvo, Matthew Ronshaugen, Tom Pettini
Software Mentions: 1
Published: over 5 years ago

10.2196/15406

Artificial Intelligence Technologies for Coping with Alarm Fatigue in Hospital Environments Because of Sensory Overload: Algorithm Development and Validation
Cited by: 19
Author(s): Chrystinne Oliveira Fernandes, Simon Miles, Carlos José Pereira de Lucena, Donald Cowan
Software Mentions: 1
Published: over 6 years ago

10.3389/fnins.2021.738576

Dysregulation of Principal Circulating miRNAs in Non-human Primates Following Ischemic Stroke
Cited by: 2
Author(s): Jian Chen, Haiping Zhao, Yuyou Huang, Yuqian Li, Junfen Fan, Rongliang Wang, Ziping Han, Zhenhong Yang, Longfei Wu, Di Wu, Yumin Luo, Xunming Ji
Software Mentions: 1
Published: almost 5 years ago

10.1002/ece3.4663

Thermal tolerance of Mediterranean marine macrophytes: Vulnerability to global warming
Cited by: 50
Author(s): Ioannis Savva, Scott Bennett, Guillem Roca, Gabriel Jordá, Núria Marbà
Software Mentions: 1
Published: almost 8 years ago

10.3389/fmicb.2020.00839

Population Genomic Analysis Reveals a Highly Conserved Mitochondrial Genome in Fusarium asiaticum
Cited by: 13
Author(s): Meixin Yang, Hao Zhang, Theo A. J. van der Lee, C. Waalwijk, Anne D. van Diepeningen, Feng Jing, Balázs Brankovics, Wanquan Chen
Software Mentions: 1
Published: over 6 years ago

10.18632/aging.103837

IGF2 loss of imprinting enhances colorectal cancer stem cells pluripotency by promoting tumor autophagy
Cited by: 10
Author(s): Tianyi Gao, Xiangxiang Liu, Bangshun He, Yuqin Pan, Shukui Wang
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12909-020-1984-1

Assessment of third-year medical students’ comfort and preparedness for navigating challenging clinical scenarios with patients, peers, and supervisors
Cited by: 1
Author(s): Anna R. Kahkoska, Tracy M. Deselm, Laura Young
Software Mentions: 1
Published: over 6 years ago

10.1002/ece3.7003

Natural history of model organisms: The secret (group) life of Drosophila melanogaster larvae and why it matters to developmental ecology
Cited by: 17
Author(s): Juliano Morimoto, Zuzanna Pietras
Software Mentions: 1
Published: almost 6 years ago

10.1002/ece3.1993

Paternal heat exposure causes <scp>DNA</scp> methylation and gene expression changes of Stat3 in Wild guinea pig sons
Cited by: 27
Author(s): Alexandra Weyrich, Stephanie Benz, Stephan Karl, Marie Jeschek, Katarina Jewgenow, Joerns Fickel
Software Mentions: 1
Published: over 10 years ago

10.3389/fnmol.2019.00320

The lhfpl5 Ohnologs lhfpl5a and lhfpl5b Are Required for Mechanotransduction in Distinct Populations of Sensory Hair Cells in Zebrafish
Cited by: 23
Author(s): Timothy Erickson, Itallia V. Pacentine, Alexandra Venuto, Rachel Clemens, Teresa Nicolson
Software Mentions: 1
Published: over 6 years ago

10.3390/metabo11060382

Dried Blood Spot (DBS) Methodology Study for Biomarker Discovery in Lysosomal Storage Disease (LSD)
Cited by: 7
Author(s): Corina-Marcela Rus, Sebastiano Di Bucchianico, Claudia Cozma, Ralf Zimmermann, Péter Bauer
Software Mentions: 1
Published: about 5 years ago

10.3389/fcell.2021.681372

CLEC4s as Potential Therapeutic Targets in Hepatocellular Carcinoma Microenvironment
Cited by: 13
Author(s): Yinjiang Zhang, Haixia Wei, Lu Fan, Mingyan Fang, He Xu, Bingwei Lu, Zhigang Pang
Software Mentions: 1
Published: about 5 years ago

10.3389/fcell.2020.612924

Integrated Analysis of a Competing Endogenous RNA Network Reveals a Prognostic Signature in Kidney Renal Papillary Cell Carcinoma
Cited by: 9
Author(s): Ruyi He, Longyu Wang, Juan Li, Lixin Ma, Fei Wang, Yang Wang
Software Mentions: 1
Published: over 5 years ago

10.3390/metabo10010023

Phytohormone and Transcriptomic Analysis Reveals Endogenous Cytokinins Affect Kiwifruit Growth under Restricted Carbon Supply
Cited by: 22
Author(s): Simona Nardozza, Janine M. Cooney, Helen Boldingh, Katrin G. Hewitt, Tania Trower, Dan Jones, Amali H. Thrimawithana, Andrew C. Allan, Annette Richardson
Software Mentions: 1
Published: over 6 years ago

10.3390/metabo11020100

Targeted Metabolomic Assessment of the Sub-Lethal Toxicity of Halogenated Acetic Acids (HAAs) to Daphnia magna
Cited by: 8
Author(s): Lisa M. Labine, Myrna J. Simpson
Software Mentions: 1
Published: over 5 years ago

10.1186/1741-7015-11-35

A low-cost method to assess the epidemiological importance of individuals in controlling infectious disease outbreaks
Cited by: 38
Author(s): Timo Smieszek, Marcel Salathé
Software Mentions: 1
Published: over 13 years ago

10.3390/metabo11060358

The Metabolic Response of Brachypodium Roots to the Interaction with Beneficial Bacteria Is Affected by the Plant Nutritional Status
Cited by: 6
Author(s): Martino Schillaci, Cheka Kehelpannala, Federico Martinez‐Seidel, Penelope M. C. Smith, Borjana Arsova, Michelle Watt, Ute Roessner
Software Mentions: 1
Published: about 5 years ago

10.1186/s12916-018-1214-4

Fitness to practise sanctions in UK doctors are predicted by poor performance at MRCGP and MRCP(UK) assessments: data linkage study
Cited by: 14
Author(s): Richard Wakeford, Kasia Ludka, Katherine Woolf, I. C. McManus
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-019-42673-1

Barley yield formation under abiotic stress depends on the interplay between flowering time genes and environmental cues
Cited by: 64
Author(s): Mathias Wiegmann, Andreas Maurer, Anh Van Pham, Timothy J. March, Ayed Al‐Abdallat, William Thomas, Hazel Bull, Mohammed Shahid, J. Eglinton, Michaël Baum, Andrew J. Flavell, Mark Tester, Klaus Pillen
Software Mentions: 1
Published: over 7 years ago

10.1097/GME.0000000000001816

Reproductive period and preclinical cerebrospinal fluid markers for Alzheimer disease: a 25-year study
Cited by: 5
Author(s): Jenna Najar, Tore Hällström, Anna Zettergren, Lena Johansson, Erik Joas, Madeleine Mellqvist Fässberg, Henrik Zetterberg, Kaj Blennow, Silke Kern, Ingmar Skoog
Software Mentions: 1
Published: about 5 years ago

10.1186/s12862-017-1022-z

Drift, selection, or migration? Processes affecting genetic differentiation and variation along a latitudinal gradient in an amphibian
Cited by: 27
Author(s): María Cortázar-Chinarro, Ella Zoe Lattenkamp, Yvonne Meyer‐Lucht, Émilien Luquet, Anssi Laurila, Jacob Höglund
Software Mentions: 1
Published: about 9 years ago

10.1186/s12916-016-0764-6

Characteristics and knowledge synthesis approach for 456 network meta-analyses: a scoping review
Cited by: 64
Author(s): Wasifa Zarin, Areti Angeliki Veroniki, Vera Nincic, Afshin Vafaei, Emily Reynen, Sanober S. Motiwala, Jesmin Antony, Shannon Sullivan, Patricia Rios, Caitlin Daly, Joycelyne Ewusie, Μαρία Πετροπούλου, Adriani Nikolakopoulou, Anna Chaimani, Georgia Salanti, Sharon E. Straus, Andrea C. Tricco
Software Mentions: 1
Published: over 9 years ago

10.1590/0074-02760180332

First isolation of West Nile virus in Brazil
Cited by: 30
Author(s): Livia Carício Martins, Eliana Vieira Pinto da Silva, Lívia Medeiros Neves Casseb, Sandro Patroca da Silva, Ana Cecília Ribeiro Cruz, Jamilla Augusta de Sousa Pantoja, Daniele Barbosa de Almeida Medeiros, Arnaldo Jorge Martins Filho, Ermelinda do Rosário Moutinho da Cruz, Marialva Tereza Ferreira de Araújo, Jedson Ferreira Cardoso, Marcos Antônio Correia Rodrigues da Cunha, Gilton Luiz Almada, Alessandro Romano, Maria Guadalupe Dias Pestana Santos, Gilsa Aparecida Pimenta Rodrigues, Jannifer Oliveira Chiang, Juarez Antônio Simões Quaresma, Valéria Lima Carvalho, Pedro Fernando da Costa Vasconcelos
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-019-42882-8

On resolving ambiguities in microbial community analysis of partial nitritation anammox reactors
Cited by: 26
Author(s): Laura Orschler, Shelesh Agrawal, Susanne Lackner
Software Mentions: 1
Published: over 7 years ago

10.1038/s41389-018-0034-x

Double agents: genes with both oncogenic and tumor-suppressor functions
Cited by: 82
Author(s): Libing Shen, Qili Shi, Wenyuan Wang
Software Mentions: 1
Published: over 8 years ago

10.1007/s00795-020-00277-z

Quantitative volumetric analysis of the Golgi apparatus following X-ray irradiation by super-resolution 3D-SIM microscopy
Cited by: 1
Author(s): Takahiro Oike, Yuki Uchihara, Tiara Bunga Mayang Permata, Soehartati Gondhowiardjo, Tatsuya Ohno, Atsushi Shibata
Software Mentions: 1
Published: over 5 years ago

10.1186/s12916-020-01859-5

The global, regional, and national burden of pancreatitis in 195 countries and territories, 1990–2017: a systematic analysis for the Global Burden of Disease Study 2017
Cited by: 56
Author(s): Guoqing Ouyang, Guangdong Pan, Qiang Liu, Yongrong Wu, Zhen Liu, Wuchang Lu, Shuai Li, Zhihan Zhou, Yu Wen
Software Mentions: 1
Published: over 5 years ago

10.1128/mSystems.01041-20

Genomes of the “ Candidatus Actinomarinales” Order: Highly Streamlined Marine Epipelagic Actinobacteria
Cited by: 16
Author(s): Mario López‐Pérez, Jose M. Haro‐Moreno, Jaime Iranzo, Francisco Rodrı́guez-Valera
Software Mentions: 1
Published: over 5 years ago

10.1097/MD.0000000000015804

Prognostic nomogram for adult patients with acute myeloid leukemia
Cited by: 5
Author(s): Cunte Chen, Peipei Wang, Caixia Wang
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-019-43919-8

Food knowledge depends upon the integrity of both sensory and functional properties: a VBM, TBSS and DTI tractography study
Cited by: 8
Author(s): Miriam Vignando, Marilena Aiello, Adriana Rinaldi, Tatiana Cattarruzza, Giulia Mazzon, Paolo Manganotti, Roberto Eleopra, Raffaella I. Rumiati
Software Mentions: 1
Published: over 7 years ago

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Papers Mentioning ggplot2 11,441