cran: ggplot2 | Projects | Ecosyste.ms: Papers

10.1186/s40462-020-00200-2

Living la Vida T-LoCoH: site fidelity of Florida ranched and wild white-tailed deer (Odocoileus virginianus) during the epizootic hemorrhagic disease virus (EHDV) transmission period
Cited by: 3
Author(s): Emily T. N. Dinh, Allison Cauvin, Jeremy P. Orange, Rebecca M. Shuman, Samantha M. Wisely, Jason K. Blackburn
Software Mentions: 1
Published: over 4 years ago

10.3389/fcimb.2021.637836

Identification and Phenotypic Characterization of Hsp90 Phosphorylation Sites That Modulate Virulence Traits in the Major Human Fungal Pathogen Candida albicans
Cited by: 9
Author(s): Leenah M. Alaalm, Julia L. Crunden, Mark C Butcher, Ulrike Obst, Ryann Whealy, Carolyn Williamson, Heath O’Brien, Christiane Schaffitzel, Gordon Ramage, James Spencer, Stephanie Diezmann
Software Mentions: 1
Published: about 3 years ago

10.1016/j.omto.2020.12.009

Negative allosteric modulators of metabotropic glutamate receptor 3 target the stem-like phenotype of glioblastoma
Cited by: 2
Author(s): Hans-Georg Wirsching, Manuela Silginer, Elisa Ventura, Will Macnair, Isabel Burghardt, Manfred Claassen, Silvia Gatti, Jürgen Wichmann, Claus Riemer, Hannah Schneider, Michael Weller
Software Mentions: 1
Published: over 3 years ago

10.1016/j.omto.2020.09.003

Exploring the Role of TRIP-Brs in Human Breast Cancer: An Investigation of Expression, Clinicopathological Significance, and Prognosis
Cited by: 5
Author(s): Raj Kumar Mongre, Chandra Bhushan Mishra, Samil Jung, Beom Suk Lee, Nguyen Thi Ngoc Quynh, Nguyen Hai Anh, Davaajragal Myagmarjav, Taeyeon Jo, Myeong‐Sok Lee
Software Mentions: 1
Published: almost 4 years ago

10.1155/2021/1353674

Data Mining, Network Pharmacology, and Molecular Docking Explore the Effects of Core Traditional Chinese Medicine Prescriptions in Patients with Rectal Cancer and Qi and Blood Deficiency Syndrome
Cited by: 2
Author(s): Shiyu Ma, Lin Zheng, Lan Zheng, Xiaolan Bian
Software Mentions: 1
Published: over 3 years ago

10.1016/j.omtn.2021.04.019

Construction of a Myc-associated ceRNA network reveals a prognostic signature in hepatocellular carcinoma
Cited by: 10
Author(s): Dandan Zhang, Yi Shi, Ji‐Bin Liu, Xiaoli Yang, Rui Xin, Huimin Wang, Pei‐Yao Wang, Chengyou Jia, Wenjie Zhang, Yu‐Shui Ma, Da Fu
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-020-64367-9

Dynamics of apomictic and sexual reproduction during primary succession on a glacier forefield in the Swiss Alps
Cited by: 7
Author(s): Christian Sailer, Jürg Stöcklin, Ueli Grossniklaus
Software Mentions: 1
Published: over 4 years ago

10.1155/2020/5239854

Chinese Medicine for Psoriasis Vulgaris Based on Syndrome Pattern: A Network Pharmacological Study
Cited by: 4
Author(s): Dongmei Wang, Chuanjian Lu, Jian Yu, Miaomiao Zhang, Wei Zhu, Jiangyong Gu
Software Mentions: 1
Published: over 4 years ago

10.1111/eva.13183

Heterogeneity of a dwarf phenotype in Dutch traditional chicken breeds revealed by genomic analyses
Cited by: 7
Author(s): Zhou Wu, Chiara Bortoluzzi, Martijn F.L. Derks, Langqing Liu, Mirte Bosse, S.J. Hiemstra, M.A.M. Groenen, R.P.M.A. Crooijmans
Software Mentions: 1
Published: almost 4 years ago

10.1016/j.csbj.2019.03.001

Evolution of Genomic Base Composition: From Single Cell Microbes to Multicellular Animals
Cited by: 24
Author(s): Jon Bohlin, John H.‐O. Pettersson
Software Mentions: 1
Published: almost 6 years ago

10.1590/s0102-865020200050000008

Differences in lipidomics may be potential biomarkers for early diagnosis of pancreatic cancer
Cited by: 8
Author(s): Dehua Zhou, Di Mu, Ming Cheng, Yuting Dou, Xianwei Zhang, Zhensheng Feng, Guangyu Qiu, Hua Yu, Yang Chen, Hong Xu, Jian Sun, Ling Zhou
Software Mentions: 1
Published: almost 5 years ago

10.1186/s12920-018-0354-x

HLA and proteasome expression body map
Cited by: 67
Author(s): Sebastian Boegel, Martin Löwer, Thomas Bukur, Patrick Sorn, John C. Castle, Uğur Şahin
Software Mentions: 1
Published: over 6 years ago

10.15252/msb.20209469

Mapping the nucleolar proteome reveals a spatiotemporal organization related to intrinsic protein disorder
Cited by: 66
Author(s): Lovisa Stenström, Diana Mahdessian, Christian Gnann, Anthony J. Cesnik, Wei Ouyang, Manuel D. Leonetti, Mathias Uhlén, Sara Cuylen-Haering, Peter Thul, Emma Lundberg
Software Mentions: 1
Published: over 4 years ago

10.1155/2021/3495360

Network Pharmacology-Based Investigation of the Therapeutic Mechanisms of Action of Danning Tablets in Nonalcoholic Fatty Liver Disease
Cited by: 6
Author(s): Tong Lin, Li Li, Caijun Liang, Lisheng Peng
Software Mentions: 1
Published: over 3 years ago

10.2196/16767

Translating the Burden of Pollen Allergy Into Numbers: 10-Year Observational Study of Electronically Generated Symptom Data From the Patient’s Hayfever Diary in Austria and Germany
Cited by: 25
Author(s): Katharina Bastl, Maximilian Bastl, Karl‐Christian Bergmann, Markus Berger, Uwe Berger
Software Mentions: 1
Published: almost 5 years ago

10.3389/fmed.2021.663396

HLA Variants and Inhibitor Development in Hemophilia A: A Retrospective Case-Controlled Study Using the ATHNdataset
Cited by: 4
Author(s): Joseph R. McGill, Vijaya L. Simhadri, Zuben E. Sauna
Software Mentions: 1
Published: over 3 years ago

10.1186/s12881-020-01089-9

Mutant POLQ and POLZ/REV3L DNA polymerases may contribute to the favorable survival of patients with tumors with POLE mutations outside the exonuclease domain
Cited by: 2
Author(s): Fangjin Huang, Hisashi Tanaka, Beatrice S. Knudsen, Joanne L. Rutgers
Software Mentions: 1
Published: over 4 years ago

10.1111/mpp.12900

Single gene enables plant pathogenic Pectobacterium to overcome host‐specific chemical defence
Cited by: 18
Author(s): Tijs J. M. van den Bosch, Outi Niemi, Cornelia U. Welte
Software Mentions: 1
Published: almost 5 years ago

10.1111/omi.12323

Modified SHI medium supports growth of a disease‐state subgingival polymicrobial community in vitro
Cited by: 8
Author(s): Eleanor I. Lamont, Archita Gadkari, Kristopher A. Kerns, Thao T. To, Diane M. Daubert, Georgios A. Kotsakis, Batbileg Bor, Xuesong He, Jeffrey S. McLean
Software Mentions: 1
Published: almost 4 years ago

10.1002/1878-0261.12605

ZNF281/Zfp281 is a target of miR‐1 and counteracts muscle differentiation
Cited by: 12
Author(s): Sara Nicolai, Marco Pieraccioli, Artem Smirnov, Consuelo Pitolli, Lucia Anemona, Alessandro Mauriello, Eleonora Candi, Margherita Annicchiarico-Petruzzelli, Yufang Shi, Ying Wang, Gerry Melino, Giuseppe Raschellà
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-020-65824-1

Motor axonopathies in a mouse model of Duchenne muscular dystrophy
Cited by: 6
Author(s): Justin Dhindsa, Angela L McCall, Laura M Strickland, Anna Fusco, Amanda F Kahn, Mai K. ElMallah
Software Mentions: 1
Published: over 4 years ago

10.1186/s13024-021-00478-9

Functional microRNA targetome undergoes degeneration-induced shift in the retina
Cited by: 10
Author(s): Joshua Chu-Tan, Adrian V. Cioanca, Zhiping Feng, Yvette Wooff, Ulrike Schümann, Riemke Aggio-Bruce, Hardip R. Patel, Matt Rutar, Katherine M. Hannan, Kostya I. Panov, Jan Provis, Riccardo Natoli
Software Mentions: 1
Published: about 3 years ago

10.1186/s13073-021-00946-3

Characterizing DNA methylation signatures and their potential functional roles in Merkel cell carcinoma
Cited by: 10
Author(s): Hemant Gujar, Arjun Mehta, Hongtao Li, Yvonne Tsai, Xianyang Qiu, Daniel J. Weisenberger, Miriam Galvonas Jasiulionis, Gino K In, Gangning Liang
Software Mentions: 1
Published: over 3 years ago

10.1186/s10020-020-00160-8

Neonatal hair profiling reveals a metabolic phenotype of monochorionic twins with selective intrauterine growth restriction and abnormal umbilical artery flow
Cited by: 11
Author(s): Jing Yang, Wei Yuan, Hongbo Qi, Ning Yin, Yang Yang, Zailing Li, Lili Xu, Xueju Wang, Pengbo Yuan, Luyao Li, Ting-Li Han, Yangyu Zhao
Software Mentions: 1
Published: over 4 years ago

10.1155/2021/9980949

Investigating the Multitarget Pharmacological Mechanism of Ursolic Acid Acting on Colon Cancer: A Network Pharmacology Approach
Cited by: 5
Author(s): Jun Zhao, Ping Leng, Wen Xu, Jialin Sun, Beibei Ni, Guang-Wei Liu
Software Mentions: 1
Published: over 3 years ago

10.1186/1471-2350-11-9

Impact of gene variants on sex-specific regulation of human Scavenger receptor class B type 1 (SR-BI) expression in liver and association with lipid levels in a population-based study
Cited by: 28
Author(s): Ornit Chiba‐Falek, Marshall Nichols, Sunil Suchindran, John R. Guyton, Geoffrey S. Ginsburg, Elizabeth Barrett‐Connor, Jeanette McCarthy
Software Mentions: 1
Published: almost 15 years ago

10.1186/s12881-019-0909-5

Copy number variation is highly correlated with differential gene expression: a pan-cancer study
Cited by: 151
Author(s): Xin Shao, Ning Lv, Jie Liao, Jinbo Long, Rui Xue, Ai Ni, Donghang Xu, Xiaohui Fan
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-020-65692-9

Remote ischemic conditioning in active ulcerative colitis: An explorative randomized clinical trial
Cited by: 3
Author(s): Line E. Godskesen, Thomas Ravn Lassen, Nichlas Riise Jespersen, Majken Siersbæk, Yan Yan, Michael Milek Nielsen, Sara K. Tjønnfjord, Lars Grøntved, Gunvor Iben Madsen, Jørgen Kjems, Hans Erik Bøtker, Michael Schmidt, Aleksander Krag, Jens Kjeldsen
Software Mentions: 1
Published: over 4 years ago

10.1002/mgg3.536

Molecular diagnosis of somatic overgrowth conditions: A single‐center experience
Cited by: 25
Author(s): Emilie Lalonde, Jessica Ebrahimzadeh, Keith Rafferty, Jennifer Richards‐Yutz, Richard Grant, Erik Toorens, Jennifer Marie Rosado, Erica Schindewolf, Tapan Ganguly, Jennifer M. Kalish, Matthew A. Deardorff, Arupa Ganguly
Software Mentions: 1
Published: almost 6 years ago

10.3390/molecules24071445

In Silico Investigation of the Anti-Tumor Mechanisms of Epigallocatechin-3-Gallate
Cited by: 17
Author(s): Wang Wang, Xiuhong Xiong, Xue Li, Qinyang Zhang, Wentao Yang, Linfang Du
Software Mentions: 1
Published: over 5 years ago

10.1111/eva.13289

Larval development in the Pacific oyster and the impacts of ocean acidification: Differential genetic effects in wild and domesticated stocks
Cited by: 5
Author(s): Evan Durland, Pierre De Wit, Eli Meyer, Chris Langdon
Software Mentions: 1
Published: over 3 years ago

10.1186/s12909-021-02576-0

Willingness to volunteer and readiness to practice of undergraduate medical students during the COVID-19 pandemic: a cross-sectional survey in Indonesia
Cited by: 39
Author(s): Gilbert Lazarus, Ardi Findyartini, Azis Muhammad Putera, Nico Gamalliel, David Nugraha, Imam Adli, Jason Phowira, Lyanna Azzahra, Bagas Ariffandi, Indah Suci Widyahening
Software Mentions: 1
Published: over 3 years ago

10.1245/s10434-018-6396-7

A Population-based Study on Lymph Node Retrieval in Patients with Esophageal Cancer: Results from the Dutch Upper Gastrointestinal Cancer Audit
Cited by: 38
Author(s): Leonie R. van der Werf, Johan L. Dikken, Mark I. van Berge Henegouwen, Valery Lemmens, G. Nieuwenhuijzen, Bas P. L. Wijnhoven
Software Mentions: 1
Published: over 6 years ago

10.3389/fncel.2017.00401

Differentiation-Dependent Motility-Responses of Developing Neural Progenitors to Optogenetic Stimulation
Cited by: 3
Author(s): Tímea Köhidi, Attila Jády, Károly Markó, Noémi Papp, Tibor Andrási, Zsuzsanna Környei, Emı́lia Madarász
Software Mentions: 1
Published: almost 7 years ago

10.3389/fimmu.2017.00813

T Cell Lymphoma and Leukemia in Severe Combined Immunodeficiency Pigs following Bone Marrow Transplantation: A Case Report
Cited by: 13
Author(s): Ellis J. Powell, Jared H. Graham, N. Matthew Ellinwood, Jesse M. Hostetter, Michael J. Yaeger, Chak Sum Ho, Lynden E. Gault, Veronica Norlin, Elizabeth M. Snella, Jackie K. Jens, Emily H. Waide, Adeline N. Boettcher, Maureen Kerrigan, Raymond R.R. Rowland, Jason W. Ross, Jack C. M. Dekkers, Christopher K. Tuggle
Software Mentions: 1
Published: over 7 years ago

10.2196/27824

Informing Patients With Esophagogastric Cancer About Treatment Outcomes by Using a Web-Based Tool and Training: Development and Evaluation Study
Cited by: 6
Author(s): Loïs F van de Water, Héctor G. van den Boorn, Florian Hoxha, Inge Henselmans, Mart M Calff, Mirjam A. G. Sprangers, Ameen Abu‐Hanna, Ellen M. A. Smets
Software Mentions: 1
Published: about 3 years ago

10.1186/s12909-018-1331-y

The Next Generation Scientist program: capacity-building for future scientific leaders in low- and middle-income countries
Cited by: 16
Author(s): Goonaseelan Pillai, Kelly Chibale, Edwin C. Constable, Akiko Nathalie Keller, Marcelo M. Gutierrez, Fareed Mirza, Christian Sengstag, Collen Masimirembwa, Paolo Denti, Gary Maartens, Michèle Ramsay, Bernhards Ogutu, Eyasu Makonnen, Richard K. Gordon, Carlos Gil Ferreira, F.A. Goldbaum, Wim Degrave, J. Michael Spector, Brigitta Tadmor, Hedwig J. Kaiser
Software Mentions: 1
Published: about 6 years ago

10.1080/19420889.2020.1812865

New insights into the limited thermotolerance of anhydrobiotic tardigrades
Cited by: 4
Author(s): Ricardo Cardoso Neves, Robyn M. Stuart, Nadja Møbjerg
Software Mentions: 1
Published: almost 5 years ago

10.1093/gigascience/giy015

Piggy: a rapid, large-scale pan-genome analysis tool for intergenic regions in bacteria
Cited by: 47
Author(s): Harry A. Thorpe, Sion C. Bayliss, Samuel K. Sheppard, Edward J. Feil
Software Mentions: 1
Published: over 6 years ago

10.3390/molecules24152828

Variability of Bioactive Glucosinolates, Isothiocyanates and Enzyme Patterns in Horseradish Hairy Root Cultures Initiated from Different Organs
Cited by: 9
Author(s): Regina Bertóti, Andrea Böszörményi, Ágnes Alberti, Szabolcs Béni, Márta M-Hamvas, Éva Szőke, Gábor Vasas, Sándor Gonda
Software Mentions: 1
Published: over 5 years ago

10.1093/gigascience/giy024

Differential protein expression and post-translational modifications in metronidazole-resistant Giardia duodenalis
Cited by: 37
Author(s): Samantha J. Emery, Louise Baker, Brendan R E Ansell, Mehdi Mirzaei, Paul A. Haynes, Malcom J McConville, Staffan G. Svärd, Aaron R. Jex
Software Mentions: 1
Published: over 6 years ago

10.1038/s42003-021-01803-0

smiFISH and embryo segmentation for single-cell multi-gene RNA quantification in arthropods
Cited by: 19
Author(s): Llilians Calvo, Matthew Ronshaugen, Tom Pettini
Software Mentions: 1
Published: over 3 years ago

10.3390/molecules26195808

Optimization of HS-SPME for GC-MS Analysis and Its Application in Characterization of Volatile Compounds in Sweet Potato
Cited by: 14
Author(s): Rong Zhang, Cuiming Tang, Biao Jiang, Xueying Mo, Zhangying Wang
Software Mentions: 1
Published: about 3 years ago

10.3390/molecules24010203

Biosynthetic Gene Content of the ‘Perfume Lichens’ Evernia prunastri and Pseudevernia furfuracea
Cited by: 33
Author(s): Anjuli Calchera, Francesco Dal Grande, Helge B. Bode, Imke Schmitt
Software Mentions: 1
Published: almost 6 years ago

10.1111/eva.13133

Dispersal ability predicts spatial genetic structure in native mammals persisting across an urbanization gradient
Cited by: 14
Author(s): Jonathan L. Richardson, Sozos Michaelides, Matthew Combs, Mihajla Djan, Lianne Bisch, Kerry Barrett, Georgianna Silveira, Justin Butler, Than Thar Aye, Jason Munshi‐South, Michael DiMatteo, Charles H. Brown, Thomas J. McGreevy
Software Mentions: 1
Published: about 4 years ago

10.3389/fchem.2019.00311

Stigmatic Microscopy Enables Low-Cost, 3D, Microscale Particle Imaging Velocimetry in Rehydrating Aqueous Two-Phase Systems
Cited by: 3
Author(s): Cameron Yamanishi, C. Ryan Oliver, Taisuke Kojima, Shuichi Takayama
Software Mentions: 1
Published: over 5 years ago

10.3390/molecules26051278

Point Mutations of Nicotinic Receptor α1 Subunit Reveal New Molecular Features of G153S Slow-Channel Myasthenia
Cited by: 2
Author(s): Denis S. Kudryavtsev, Anastasia Isaeva, Daria Barkova, Ekaterina N. Spirova, Renata Mukhutdinova, Igor E. Kasheverov, Victor I. Tsetlin
Software Mentions: 1
Published: over 3 years ago

10.7554/eLife.65811

Differentiation of mouse fetal lung alveolar progenitors in serum-free organotypic cultures
Cited by: 3
Author(s): Konstantinos Gkatzis, Paolo Panza, Sofia Peruzzo, Didier Y.R. Stainier
Software Mentions: 1
Published: about 3 years ago

10.3390/molecules25215002

Distribution of Protein Precipitation Capacity within Variable Proanthocyanidin Fingerprints
Cited by: 9
Author(s): Milla Marleena Leppä, Juuso Erik Laitila, Juha‐Pekka Salminen
Software Mentions: 1
Published: about 4 years ago

10.1128/mSphere.00090-20

Restricted Sequence Variation in Streptococcus pyogenes Penicillin Binding Proteins
Cited by: 16
Author(s): Andrew Hayes, Jake A. Lacey, Jacqueline M Morris, Mark R. Davies, Steven Y. C. Tong
Software Mentions: 1
Published: over 4 years ago

10.3390/molecules26051398

Signaling Pathways Regulated by Silica Nanoparticles
Cited by: 12
Author(s): Shih-Yi Hsu, Robert Morris, Feng Cheng
Software Mentions: 1
Published: over 3 years ago

10.3390/molecules22071097

Evaluation of Marine Microalga Diacronema vlkianum Biomass Fatty Acid Assimilation in Wistar Rats
Cited by: 7
Author(s): Cristina de Mello-Sampayo, Angela Paterna, Ambra Polizzi, Diana Duarte, Irineu Batista, Rui Pinto, Patrícia Gonçalves, Anabela Raymundo, Ana Paula Batista, Luísa Gouveia, Beatriz Silva‐Lima, Narcisa M. Bandarra
Software Mentions: 1
Published: over 7 years ago

10.3390/molecules25122954

Metabolomics of Myrcia bella Populations in Brazilian Savanna Reveals Strong Influence of Environmental Factors on Its Specialized Metabolism
Cited by: 12
Author(s): Luiz Leonardo Saldanha, Pierre‐Marie Allard, Adlin Afzan, Fernanda de Souza Rosa de Pereira Melo, Laurence Marcourt, Emerson Ferreira Queiroz, Wagner Vilegas, Cláudia Maria Furlan, Anne Lígia Dokkedal, Jean‐Luc Wolfender
Software Mentions: 1
Published: over 4 years ago

10.1111/1755-0998.12533

Detecting the movement and spawning activity of bigheaded carps with environmental <scp>DNA</scp>
Cited by: 65
Author(s): Richard A. Erickson, Christopher B. Rees, Alison A. Coulter, Christopher M. Merkes, S. Grace McCalla, Katherine F. Touzinsky, Liza R. Walleser, Reuben R. Goforth, Jon J. Amberg
Software Mentions: 1
Published: over 8 years ago

10.1128/mBio.00478-21

Genotypic and Phenotypic Diversity among Human Isolates of Akkermansia muciniphila
Cited by: 51
Author(s): Bradford Becken, Lauren Davey, Dustin R. Middleton, Katherine D. Mueller, Agastya Sharma, Zachary C. Holmes, Eric P. Dallow, Brenna C Remick, Gregory M. Barton, Lawrence A. David, James V. McCann, Sarah Armstrong, Per Malkus, Raphael H. Valdivia
Software Mentions: 1
Published: over 3 years ago

10.1186/s12909-020-1984-1

Assessment of third-year medical students’ comfort and preparedness for navigating challenging clinical scenarios with patients, peers, and supervisors
Cited by: 1
Author(s): Anna R. Kahkoska, Tracy M. Deselm, Laura Young
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-021-82472-1

Neuroendocrine prostate cancer has distinctive, non-prostatic HOX code that is represented by the loss of HOXB13 expression
Cited by: 9
Author(s): Siyuan Cheng, Shu Yang, Yunfan Shi, Runhua Shi, Yunshin Yeh, Xiuping Yu
Software Mentions: 1
Published: almost 4 years ago

10.1111/eva.12804

Natural Wolbachia infections are common in the major malaria vectors in Central Africa
Cited by: 38
Author(s): Diégo Ayala, Ousman Akone‐Ella, Nil Rahola, Pierre Kengne, Marc F. Ngangue, Fabrice Mezeme, Boris Makanga, Martha Nigg, Carlo Costantini, Frédéric Simard, Franck Prugnolle, Benjamín Roche, Olivier Duron, Christophe Paupy
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-021-82295-0

Lsr2, a nucleoid-associated protein influencing mycobacterial cell cycle
Cited by: 14
Author(s): Marta Kołodziej, Damian Trojanowski, Katarzyna Bury, Joanna Hołówka, Weronika Matysik, Hanna Kąkolewska, Helge Feddersen, Giacomo Giacomelli, Igor Konieczny, Marc Bramkamp, Jolanta Zakrzewska‐Czerwińska
Software Mentions: 1
Published: almost 4 years ago

10.1371/journal.pone.0183765

Association between statin use, the vaginal microbiome, and Gardnerella vaginalis vaginolysin-mediated cytotoxicity
Cited by: 18
Author(s): Abdallah A. Abdelmaksoud, Philippe H. Girerd, Erin M. Garcia, J. Paul Brooks, Lauren M. Leftwich, Nihar U. Sheth, Steven Bradley, Myrna G. Serrano, Jennifer M. Fettweis, Bernice Huang, Jerome F. Strauss, Gregory A. Buck, Kimberly K. Jefferson
Software Mentions: 1
Published: about 7 years ago

10.1038/s42003-020-1052-8

SAMHD1 is a key regulator of the lineage-specific response of acute lymphoblastic leukaemias to nelarabine
Cited by: 20
Author(s): Tamara Rothenburger, Katie-May McLaughlin, Tobias Herold, C. Schneider, Thomas Oellerich, Florian Rothweiler, Andrew Feber, Tim R. Fenton, Mark N. Wass, Oliver T. Keppler, Martin Michaelis, Jindrich Cinatl
Software Mentions: 1
Published: over 4 years ago

10.1186/s12915-021-01138-6

Single-cell analysis at the protein level delineates intracellular signaling dynamic during hematopoiesis
Cited by: 5
Author(s): Jinheng Wang, Chenggong Tu, Hui Zhang, Yongliang Huo, Eline Menu, Jinbao Liu
Software Mentions: 1
Published: about 3 years ago

10.1038/s42003-021-02609-w

Phylogeographic reconstruction of the marbled crayfish origin
Cited by: 6
Author(s): Julian Gutekunst, Olena Maiakovska, Katharina Hanna, Panagiotis Provataris, Hannes Horn, Stephan Wolf, Christopher E. Skelton, Nathan J. Dorn, Frank Lyko
Software Mentions: 1
Published: about 3 years ago

10.3389/fendo.2021.664839

Decreased Expression of Ileal Thyroid Hormone Transporters in a Hypothyroid Patient: A Case Report
Cited by: 4
Author(s): Chae Won Chung, Eun Young Mo, Gyung Seo Jung, Yoo Hyung Kim, Sun Wook Cho, Do Joon Park, Jeong Mo Bae, Young Joo Park
Software Mentions: 1
Published: over 3 years ago

10.1093/gigascience/giab004

FASTQuick: rapid and comprehensive quality assessment of raw sequence reads
Cited by: 0
Author(s): Fan Zhang, Hyun Min Kang
Software Mentions: 1
Published: almost 4 years ago

10.1111/eva.12430

Sockeye salmon repatriation leads to population re‐establishment and rapid introgression with native kokanee
Cited by: 22
Author(s): Andrew J. Veale, Michael A. Russello
Software Mentions: 1
Published: about 8 years ago

10.1074/mcp.RA118.001307

The mRNA-bound Proteome of Leishmania mexicana: Novel Genetic Insight into an Ancient Parasite
Cited by: 32
Author(s): Luis Miguel De Pablos, Tiago Luiz Ferreira, Adam Dowle, Sarah Forrester, Ewan Parry, Katherine Newling, Pegine Walrad
Software Mentions: 1
Published: over 5 years ago

10.1074/mcp.RA119.001472

Multibatch TMT Reveals False Positives, Batch Effects and Missing Values
Cited by: 115
Author(s): Alejandro Brenes, Jens Hukelmann, Dalila Bensaddek
Software Mentions: 1
Published: about 5 years ago

10.1186/1741-7015-11-35

A low-cost method to assess the epidemiological importance of individuals in controlling infectious disease outbreaks
Cited by: 38
Author(s): Timo Smieszek, Marcel Salathé
Software Mentions: 1
Published: almost 12 years ago

10.1093/gigascience/giab050

SCIGA: Software for large-scale, single-cell immunoglobulin repertoire analysis
Cited by: 0
Author(s): Haocheng Ye, Lin Cheng, Bin Ju, Gang Xu, Yang Liu, Shuye Zhang, Lifei Wang, Zheng Zhang
Software Mentions: 1
Published: about 3 years ago

10.1002/glia.23144

Suppression of SNARE-dependent exocytosis in retinal glial cells and its effect on ischemia-induced neurodegeneration
Cited by: 13
Author(s): Lysann Wagner, Thomas Pannicke, Vanessa Rupprecht, Ina Frommherz, Cornelia Volz, Peter Illéš, Johannes Hirrlinger, Herbert Jägle, Veronica Egger, Philip G. Haydon, Frank W. Pfrieger, Antje Grosche
Software Mentions: 1
Published: over 7 years ago

10.1002/glia.24048

Elovl5 is required for proper action potential conduction along peripheral myelinated fibers
Cited by: 6
Author(s): Eriola Hoxha, Ilaria Balbo, Roberta Parolisi, Matteo Audano, Francesca Montarolo, Francesco Ravera, Michela Guglielmotto, Luísa Muratori, Stefania Raimondo, Eleonora DiGregorio, Annalisa Buffo, Alfredo Brusco, Barbara Borroni, Nico Mitro, Donatella Caruso, Filippo Tempia
Software Mentions: 1
Published: over 3 years ago

10.1186/s12916-018-1214-4

Fitness to practise sanctions in UK doctors are predicted by poor performance at MRCGP and MRCP(UK) assessments: data linkage study
Cited by: 14
Author(s): Richard Wakeford, Kasia Ludka, Katherine Woolf, I. C. McManus
Software Mentions: 1
Published: almost 6 years ago

10.1016/j.molcel.2018.05.033

mRNA Deadenylation Is Coupled to Translation Rates by the Differential Activities of Ccr4-Not Nucleases
Cited by: 176
Author(s): M. Webster, Ying Hsin Chen, James A.W. Stowell, Najwa Alhusaini, Thomas J. Sweet, Brenton R. Graveley, Jeff Coller, Lori A. Passmore
Software Mentions: 1
Published: over 6 years ago

10.1111/eva.12897

The role of windows of selection and windows of dominance in the evolution of insecticide resistance in human disease vectors
Cited by: 11
Author(s): Andy South, Rosemary Susan Lees, Gala Garrod, Jessica Carson, David Malone, Ian M. Hastings
Software Mentions: 1
Published: almost 5 years ago

10.1111/gcbb.12419

Could Miscanthus replace maize as the preferred substrate for anaerobic digestion in the United Kingdom? Future breeding strategies
Cited by: 10
Author(s): Sarah Purdy, Anne Maddison, Christopher Nunn, Ana L. Winters, Emma Timms-Taravella, Cerys Jones, John Clifton‐Brown, Iain S. Donnison, Joe Gallagher
Software Mentions: 1
Published: almost 8 years ago

10.1186/s12916-016-0764-6

Characteristics and knowledge synthesis approach for 456 network meta-analyses: a scoping review
Cited by: 64
Author(s): Wasifa Zarin, Areti Angeliki Veroniki, Vera Nincic, Afshin Vafaei, Emily Reynen, Sanober S. Motiwala, Jesmin Antony, Shannon Sullivan, Patricia Rios, Caitlin Daly, Joycelyne Ewusie, Μαρία Πετροπούλου, Adriani Nikolakopoulou, Anna Chaimani, Georgia Salanti, Sharon E. Straus, Andrea C. Tricco
Software Mentions: 1
Published: almost 8 years ago

10.1186/s12943-021-01308-8

The inflammatory kinase IKKα phosphorylates and stabilizes c-Myc and enhances its activity
Cited by: 19
Author(s): Bernhard Moser, Bernhard Hochreiter, José Basílio, Viola Gleitsmann, Anja Panhuber, Alan Pardo-Garcia, Bastian Hoesel, Manuel Salzmann, Ulrike Resch, Mamoona Noreen, Johannes A. Schmid
Software Mentions: 1
Published: almost 4 years ago

10.1186/s12943-020-01160-2

CircMRPS35 suppresses gastric cancer progression via recruiting KAT7 to govern histone modification
Cited by: 102
Author(s): Meng-Meng Jie, Yaran Wu, Mengyuan Gao, Xinzhe Li, Cheng Liu, Qin Ouyang, Qingyun Tang, Changyu Shan, Yang‐Fan Lv, Kebin Zhang, Qian Dai, Yang Chen, Shuo Zeng, Chenglin Li, Liting Wang, Fengtian He, C. Hu, Shi–Ming Yang
Software Mentions: 1
Published: over 4 years ago

10.1017/gheg.2020.3

The Nigerian Bioinformatics and Genomics Network (NBGN): a collaborative platform to advance bioinformatics and genomics in Nigeria
Cited by: 7
Author(s): Segun Fatumo, ThankGod Echezona Ebenezer, Chinwe Ekenna, Itunuoluwa Isewon, Umar Ahmad, Charles Oluwaseun Adetunji, Elijah Kolawole Oladipo, Marion O. Adebiyi, Ezekiel Adebiyi, Oyekanmi Nashiru, Nigerian Bioinformatics
Software Mentions: 1
Published: almost 5 years ago

10.1002/ece3.5237

Genetic diversity, admixture, and hatchery influence in Brook Trout (Salvelinus fontinalis) throughout western New York State
Cited by: 14
Author(s): Stephanie Dowell Beer, Scott Cornett, Peter Austerman, Betsy Trometer, Thomas Hoffman, Meredith L. Bartron
Software Mentions: 1
Published: over 5 years ago

10.1186/s13041-017-0312-0

Optimizing reproducibility of operant testing through reinforcer standardization: identification of key nutritional constituents determining reward strength in touchscreens
Cited by: 21
Author(s): Eun Woo Kim, Benjamin U. Phillips, Christopher Heath, So Yeon Cho, Hyun-Jeong Kim, Jemeen Sreedharan, Ho Taek Song, Jong Eun Lee, Timothy J. Bussey, Chul Hoon Kim, Eosu Kim, Lisa M. Saksida
Software Mentions: 1
Published: over 7 years ago

10.3389/fimmu.2017.01227

IFNγ Enhances CD64-Potentiated Phagocytosis of Treponema pallidum Opsonized with Human Syphilitic Serum by Human Macrophages
Cited by: 30
Author(s): Kelly L. Hawley, Adriana R. Cruz, Sarah Benjamin, Carson J. La Vake, Jorge Cervantes, Morgan LeDoyt, Lady G. Ramirez, Daniza Mandich, Mary Fiel-Gan, Melissa J. Caimano, Justin D. Radolf, Juan C. Salazar
Software Mentions: 1
Published: about 7 years ago

10.5334/aogh.2574

Nationwide Hospital-Based Seroprevalence of Hepatitis A and Hepatitis E Virus in Bangladesh
Cited by: 7
Author(s): Ashraful Islam Khan, M Salimuzzaman, Md. Taufiqul Islam, Mokibul Hassan Afrad, Tahmina Shirin, Monjur Hossain Khan Jony, Md. Ashraful Alam, Mahmudur Rahman, Meerjady Sabrina Flora, Firdausi Qadri
Software Mentions: 1
Published: almost 5 years ago

10.1039/c4mb00290c

Proteome-wide analysis of human disease mutations in short linear motifs: neglected players in cancer?
Cited by: 75
Author(s): Bora Uyar, Robert J. Weatheritt, Holger Dinkel, Norman E. Davey, Toby J. Gibson
Software Mentions: 1
Published: almost 11 years ago

10.1136/gutjnl-2017-315631

Single-cell RNAseq reveals seven classes of colonic sensory neuron
Cited by: 181
Author(s): James R.F. Hockley, Toni S Taylor, Gerard Callejo, Anna Wilbrey, Alex Gutteridge, Karsten Bach, Wendy J. Winchester, D Bulmer, Gordon McMurray, Ewan St. John Smith
Software Mentions: 1
Published: over 6 years ago

10.1093/molbev/msaa104

Evolution of Human Brain Size-Associated NOTCH2NL Genes Proceeds toward Reduced Protein Levels
Cited by: 8
Author(s): Gerrald A. Lodewijk, Diana Pereira Fernandes, Iraklis Vretzakis, Jeanne E. Savage, Frank M. J. Jacobs
Software Mentions: 1
Published: over 4 years ago

10.1093/molbev/msz249

HLA Heterozygote Advantage against HIV-1 Is Driven by Quantitative and Qualitative Differences in HLA Allele-Specific Peptide Presentation
Cited by: 51
Author(s): Jatin Arora, Federica Pierini, Paul J. McLaren, Mary Carrington, Jacques Fellay, Tobias Lenz
Software Mentions: 1
Published: about 5 years ago

10.1002/acn3.50867

The NIH Toolbox for cognitive surveillance in Duchenne muscular dystrophy
Cited by: 11
Author(s): Mathula Thangarajh, Aaron J. Kaat, Genila Bibat, Jennifer Mansour, Katherine Summerton, Anthony Gioia, Carly Berger, Kristina K. Hardy, Kathryn R. Wagner
Software Mentions: 1
Published: about 5 years ago

10.1080/19336950.2021.1965422

A pan-cancer analysis revealed the role of the SLC16 family in cancer
Cited by: 16
Author(s): Jun Li, Jiaheng Xie, Dan Wu, Liang Chen, Zixuan Gong, Rui Wu, Y. Hu, Jiangning Zhao, Yetao Xu
Software Mentions: 1
Published: almost 4 years ago

10.1186/s12916-020-01859-5

The global, regional, and national burden of pancreatitis in 195 countries and territories, 1990–2017: a systematic analysis for the Global Burden of Disease Study 2017
Cited by: 56
Author(s): Guoqing Ouyang, Guangdong Pan, Qiang Liu, Yongrong Wu, Zhen Liu, Wuchang Lu, Shuai Li, Zhihan Zhou, Yu Wen
Software Mentions: 1
Published: almost 4 years ago

10.1186/s12916-020-01703-w

Circulating bilirubin levels and risk of colorectal cancer: serological and Mendelian randomization analyses
Cited by: 27
Author(s): Nazlisadat Seyed Khoei, Mazda Jenab, Neil Murphy, Barbara L. Banbury, Robert Carreras‐Torres, Vivian Viallon, Tilman Kühn, Bas Bueno‐de‐Mesquita, Krasimira Aleksandrova, Amanda J. Cross, Elisabete Weiderpass, Magdalena Stępień, Andrew Cameron Bulmer, Anne Tjønneland, Marie Christine Boutron-Ruault, Gianluca Severi, Franck Carbonnel, Verena Katzke, Heiner Boeing, Michael Bergmann, Antonia Trichopoulou, Anna Karakatsani, Georgia Martimianaki, Domenico Palli, Giovanna Tagliabue, Salvatore Panico, Rosario Tumino, Carlotta Sacerdote, Guri Skeie, Susana Merino, Catalina Bonet, Miguel Rodríguez‐Barranco, Leire Gil, María Dolores Chirlaque, Eva Ardanaz, Robin Myte, Johan Hultdin, Aurora Pérez-Cornago, Dagfinn Aune, Konstantinos K. Tsilidis, Demetrius Albanês, John A. Baron, Sonja I. Berndt, Stéphane Bézieau, Hermann Brenner, Peter T. Campbell, Graham Casey, Andrew T. Chan, Jenny Chang‐Claude, Stephen J. Chanock, Michelle Cotterchio, Steven Gallinger, Stephen B. Gruber, Robert W. Haile, Jochen Hampe, Michael Hoffmeister, John L. Hopper, Li Hsu, Jeroen R. Huyghe, Mark A. Jenkins, Amit D. Joshi, Ellen Kampman, Susanna C. Larsson, Loı̈c Le Marchand, Christopher I. Li, Li Li, Annika Lindblom, Noralane M. Lindor, Vicente Martín, Vı́ctor Moreno, Polly A. Newcomb, Kenneth Offit, Shuji Ogino, Patrick S. Parfrey, Paul D.P. Pharoah, Gad Rennert, Lori C. Sakoda, Clemens Schafmayer, Stephanie L. Schmit, Robert E. Schoen, Martha L. Slattery, Stephen N. Thibodeau, Cornelia M. Ulrich, Fränzel J.B. van Duijnhoven, Korbinian Weigl, Stephanie J. Weinstein, Emily White, Alicja Wolk, Michael O. Woods, Anna H. Wu, Xuehong Zhang, Pietro Ferrari, Gabriele Anton, Annette Peters, Ulrike Peters, Marc J. Gunter, Karl‐Heinz Wagner, Heinz Freisling
Software Mentions: 1
Published: about 4 years ago

10.1093/molbev/msab199

BUSCO Update: Novel and Streamlined Workflows along with Broader and Deeper Phylogenetic Coverage for Scoring of Eukaryotic, Prokaryotic, and Viral Genomes
Cited by: 1,440
Author(s): Mosè Manni, Matthew Berkeley, Mathieu Seppey, Felipe A. Simão, Evgeny M. Zdobnov
Software Mentions: 1
Published: over 3 years ago

10.1093/molbev/msy183

Pseudogenes Provide Evolutionary Evidence for the Competitive Endogenous RNA Hypothesis
Cited by: 23
Author(s): Cian Glenfield, Aoife McLysaght
Software Mentions: 1
Published: about 6 years ago

10.1186/s13100-017-0094-z

Evolutionary history of the mariner element galluhop in avian genomes
Cited by: 3
Author(s): Natasha Ávila Bertocchi, Fabiano Pimentel Torres, Analía Del Valle Garnero, Ricardo José Gunski, Gabriel Luz Wallau
Software Mentions: 1
Published: over 7 years ago

10.1080/17453674.2019.1610269

Contemporary posterior surgical approach in total hip replacement: still more reoperations due to dislocation compared with direct lateral approach? An observational study of the Swedish Hip Arthroplasty Register including 156,979 hips
Cited by: 17
Author(s): Oscar Skoogh, Georgios Tsikandylakis, Maziar Mohaddes, Szilárd Nemes, Daniel Odin, Peter Grant, Ola Rolfson
Software Mentions: 1
Published: over 5 years ago

10.1186/s13100-020-00218-8

Transposable element abundance correlates with mode of transmission in microsporidian parasites
Cited by: 14
Author(s): Nathalia Rammé Medeiros de Albuquerque, Dieter Ebert, Karen Luisa Haag
Software Mentions: 1
Published: over 4 years ago

10.1016/j.mito.2015.07.001

MitoLoc: A method for the simultaneous quantification of mitochondrial network morphology and membrane potential in single cells
Cited by: 66
Author(s): Jakob Vowinckel, Johannes Hartl, Richard J. Butler, Markus Ralser
Software Mentions: 1
Published: about 9 years ago

10.1155/2021/3336770

TLR3 Serves as a Prognostic Biomarker and Associates with Immune Infiltration in the Renal Clear Cell Carcinoma Microenvironment
Cited by: 5
Author(s): Guodong Liao, Jia Lv, Alin Ji, Shuai Meng, Chao Chen
Software Mentions: 1
Published: about 3 years ago

10.1002/evl3.112

Response to Perrier and Charmantier: On the importance of time scales when studying adaptive evolution
Cited by: 1
Author(s): Mirte Bosse, Lewis G. Spurgin, Veronika N. Laine, Ella F. Cole, Josh A. Firth, Phillip Gienapp, Andrew Gosler, Keith McMahon, Jocelyn Poissant, Irene Verhagen, M.A.M. Groenen, Kees van Oers, Ben C. Sheldon, Marcel E. Visser, Jon Slate
Software Mentions: 1
Published: over 5 years ago

Projects: cran: ggplot2

Papers Mentioning ggplot2 11,441