cran: ggplot2 | Projects | Ecosyste.ms: Papers

10.1038/s42003-021-01655-8

Hallmarks of primary neurulation are conserved in the zebrafish forebrain
Cited by: 7
Author(s): Jonathan M. Werner, Maraki Y. Negesse, Dominique L. Brooks, Allyson R. Caldwell, Jafira M. Johnson, Rachel Brewster
Software Mentions: 1
Published: over 5 years ago

10.3390/genes12071028

Nature and Nurture: Genotype-Dependent Differential Responses of Root Architecture to Agar and Soil Environments
Cited by: 5
Author(s): Merijn Kerstens, Vera Hesen, Kavya Yalamanchili, Andrea Bimbó, Stephen P. Grigg, Davy Opdenacker, Tom Beeckman, Renze Heidstra, Viola Willemsen
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-021-84914-2

Long-term monitoring of SARS-CoV-2 RNA in wastewater of the Frankfurt metropolitan area in Southern Germany
Cited by: 92
Author(s): Shelesh Agrawal, Laura Orschler, Susanne Lackner
Software Mentions: 1
Published: over 5 years ago

10.3390/genes12071017

De Novo Sporophyte Transcriptome Assembly and Functional Annotation in the Endangered Fern Species Vandenboschia speciosa (Willd.) G. Kunkel
Cited by: 3
Author(s): Mohammed Bakkali, Rubén Martín-Blázquez, Mercedes Ruíz-Estévez, Manuel A. Garrido-Ramos
Software Mentions: 1
Published: almost 5 years ago

10.7717/peerj.9057

Culicidae-centric metabarcoding through targeted use of D2 ribosomal DNA primers
Cited by: 4
Author(s): Pedro M. Pedro, Jandui Almeida Amorim, Martha Virgínia Ribeiro Rojas, Ivy Luizi Rodrigues de Sá, Allan Kardec Ribeiro Galardo, Noel Fernandes Santos Neto, Dirceu Tornavoi de Carvalho, Kaio Augusto Nabas Ribeiro, María Tereza Pepe Razzolini, Maria Anice Mureb Sallum
Software Mentions: 1
Published: about 6 years ago

10.7717/peerj.4029

A microbial survey of the International Space Station (ISS)
Cited by: 49
Author(s): Jenna M. Lang, David A. Coil, Russell Y. Neches, Wendy E. Brown, Darlene Cavalier, Mark Severance, Jarrad Hampton-Marcell, Jack A. Gilbert, Jonathan A. Eisen
Software Mentions: 1
Published: over 8 years ago

10.3390/antibiotics10060677

Colistin Selection of the Mcr-1 Gene in Broiler Chicken Intestinal Microbiota
Cited by: 1
Author(s): Pedro Miguela-Villoldo, Miguel A. Moreno, Agustín Rebollada‐Merino, Antonio Rodríguez‐Bertos, Marta Hernández, David Rodrı́guez-Làzaro, Alejandro Gallardo, Alberto Quesada, J. Goyache, Lucas Domı́nguez, María Ugarte‐Ruiz
Software Mentions: 1
Published: about 5 years ago

10.1186/s12874-016-0241-0

www.common-metrics.org: a web application to estimate scores from different patient-reported outcome measures on a common scale
Cited by: 17
Author(s): Felix Fischer, Matthias Rose
Software Mentions: 1
Published: over 9 years ago

10.7717/peerj.6941

Transcriptional regulation of Bcl-2 gene by the PR/SET domain family member PRDM10
Cited by: 6
Author(s): Na Chen, Taobo Hu, Yuanyuan Gui, Jieying Gao, Zhihong Li, Shi Huang
Software Mentions: 1
Published: about 7 years ago

10.1186/s13073-018-0585-7

Genotype effects contribute to variation in longitudinal methylome patterns in older people
Cited by: 36
Author(s): Qian Zhang, Riccardo E. Marioni, Matthew R. Robinson, Jonathan Higham, Duncan Sproul, Naomi R. Wray, Ian J. Deary, Allan F. McRae, Peter M. Visscher
Software Mentions: 1
Published: over 7 years ago

10.1186/s13073-018-0587-5

Tracking key virulence loci encoding aerobactin and salmochelin siderophore synthesis in Klebsiella pneumoniae
Cited by: 129
Author(s): Margaret M C Lam, Kelly L. Wyres, Louise M. Judd, Ryan R. Wick, Adam Jenney, Sylvain Brisse, Kathryn E. Holt
Software Mentions: 1
Published: over 7 years ago

10.1186/s12874-018-0559-x

Appropriate statistical methods for analysing partially nested randomised controlled trials with continuous outcomes: a simulation study
Cited by: 28
Author(s): Jane Candlish, M. Dawn Teare, Munyaradzi Dimairo, Laura Flight, Laura Mandefield, Stephen J. Walters
Software Mentions: 1
Published: over 7 years ago

10.3390/ijerph17114081

How Does Perfectionism Influence the Development of Psychological Strengths and Difficulties in Children?
Cited by: 9
Author(s): Silvia Melero, Alexandra Morales, José P. Espada, Iván Fernández-Martínez, Mireia Orgilés
Software Mentions: 1
Published: about 6 years ago

10.18632/oncotarget.15236

Stat5 deficiency decreases transcriptional heterogeneity and supports emergence of hematopoietic sub-populations
Cited by: 2
Author(s): Zhengqi Wang, Kevin D. Bunting
Software Mentions: 1
Published: over 9 years ago

10.7717/peerj.11008

Low compositions of human toll-like receptor 7/8-stimulating RNA motifs in the MERS-CoV, SARS-CoV and SARS-CoV-2 genomes imply a substantial ability to evade human innate immunity
Cited by: 2
Author(s): Cheng Yang, Mei Fang Chen
Software Mentions: 1
Published: over 5 years ago

10.1186/s12874-019-0839-0

Multi-cohort modeling strategies for scalable globally accessible prostate cancer risk tools
Cited by: 5
Author(s): Johanna Tolksdorf, Michael W. Kattan, Stephen A. Boorjian, Stephen J. Freedland, Karim Saba, Cédric Poyet, Lourdes Guerrios-Rivera, Amanda M. De Hoedt, Michael A. Liss, Robin J. Leach, Javier Hernández, Emily Vertosick, Andrew Vickers, Donna P. Ankerst
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms21093088

Genome-Wide Identification and Characterization of UTR-Introns of Citrus sinensis
Cited by: 4
Author(s): Xiaobao Shi, Junwei Wu, Raphael Anue Mensah, Na Tian, Jiapeng Liu, Fan Liu, Jialan Chen, Jing-Ru Che, Yifeng Guo, Binghua Wu, Guoqiang Zhong, Chunzhen Cheng
Software Mentions: 1
Published: about 6 years ago

10.1186/s13073-019-0706-y

Genomic surveillance for hypervirulence and multi-drug resistance in invasive Klebsiella pneumoniae from South and Southeast Asia
Cited by: 150
Author(s): Kelly L. Wyres, To Nguyen Thi Nguyen, Margaret M C Lam, Louise M. Judd, Nguyễn Văn Vĩnh Châu, David A. B. Dance, Margaret Ip, Abhilasha Karkey, Clare Ling, Thyl Miliya, Paul N. Newton, Nguyen Phu Huong Lan, Amphone Sengduangphachanh, Paul Turner, Balaji Veeraraghavan, Phat Voong Vinh, Manivanh Vongsouvath, Nicholas R. Thomson, Stephen Baker, Kathryn E. Holt
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-021-84911-5

ABA signalling and metabolism are not essential for dark-induced stomatal closure but affect response speed
Cited by: 11
Author(s): Ashley J. Pridgeon, Alistair M. Hetherington
Software Mentions: 1
Published: over 5 years ago

10.1038/s42003-020-1002-5

Single platelet variability governs population sensitivity and initiates intrinsic heterotypic responses
Cited by: 7
Author(s): Maaike S. A. Jongen, Ben D. MacArthur, Nicola A. Englyst, Jonathan West
Software Mentions: 1
Published: about 6 years ago

10.7717/peerj.4284

EU protected area network did not prevent a country wide population decline in a threatened grassland bird
Cited by: 25
Author(s): Joao Silva, Ricardo A. Correia, Hany Alonso, Ricardo C. Martins, Marcello D’Amico, Ana Delgado, Hugo L. Sampaio, Carlos Godinho, Francisco Moreira
Software Mentions: 1
Published: over 8 years ago

10.3389/fcimb.2020.590657

Pathogenic Differences of Type 1 Restriction-Modification Allele Variants in Experimental Listeria monocytogenes Meningitis
Cited by: 3
Author(s): Florian R. Zbinden, Megan De Ste Croix, Denis Grandgirard, Richard D. Haigh, Irene Vacca, Roxana Zamudio, Emily C. A. Goodall, Roger Stephan, Marco R. Oggioni, Stephen L. Leib
Software Mentions: 1
Published: over 5 years ago

10.3390/antibiotics10060690

An Assessment of the Impact of Coronavirus Disease (COVID-19) Pandemic on National Antimicrobial Consumption in Jordan
Cited by: 22
Author(s): Sayer Al‐Azzam, Nizar M. Mhaidat, Hayaa Abdallah Banat, Mohammad Alfaour, Dana Samih Ahmad, A. Müller, Adi Al-Nuseirat, Elizabeth A. Lattyak, Barbara R. Conway, Mamoon A. Aldeyab
Software Mentions: 1
Published: about 5 years ago

10.3389/fimmu.2020.01652

Systematic Immunophenotyping Reveals Sex-Specific Responses After Painful Injury in Mice
Cited by: 18
Author(s): Vivianne L. Tawfik, Nolan A. Huck, Quentin Baca, Edward A. Ganio, Elena S. Haight, Anthony Culos, Sajjad Ghaemi, Thanaphong Phongpreecha, Martin S. Angst, James D. Clark, Nima Aghaeepour, Brice Gaudillière
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41420-021-00487-z

Type-I interferon signatures in SARS-CoV-2 infected Huh7 cells
Cited by: 21
Author(s): Xi Chen, Elisa Saccon, K. Sofia Appelberg, Flora Mikaeloff, Jimmy E Rodriguez, Beatriz Sá Vinhas, Teresa Frisan, Ákos Végvári, Alì Mirazimi, Ujjwal Neogi, Soham Gupta
Software Mentions: 1
Published: about 5 years ago

10.1186/s40462-020-00200-2

Living la Vida T-LoCoH: site fidelity of Florida ranched and wild white-tailed deer (Odocoileus virginianus) during the epizootic hemorrhagic disease virus (EHDV) transmission period
Cited by: 3
Author(s): Emily T. N. Dinh, Allison Cauvin, Jeremy P. Orange, Rebecca M. Shuman, Samantha M. Wisely, Jason K. Blackburn
Software Mentions: 1
Published: over 6 years ago

10.1016/j.omto.2020.12.009

Negative allosteric modulators of metabotropic glutamate receptor 3 target the stem-like phenotype of glioblastoma
Cited by: 2
Author(s): Hans-Georg Wirsching, Manuela Silginer, Elisa Ventura, Will Macnair, Isabel Burghardt, Manfred Claassen, Silvia Gatti, Jürgen Wichmann, Claus Riemer, Hannah Schneider, Michael Weller
Software Mentions: 1
Published: over 5 years ago

10.1016/j.omto.2020.09.003

Exploring the Role of TRIP-Brs in Human Breast Cancer: An Investigation of Expression, Clinicopathological Significance, and Prognosis
Cited by: 5
Author(s): Raj Kumar Mongre, Chandra Bhushan Mishra, Samil Jung, Beom Suk Lee, Nguyen Thi Ngoc Quynh, Nguyen Hai Anh, Davaajragal Myagmarjav, Taeyeon Jo, Myeong‐Sok Lee
Software Mentions: 1
Published: over 5 years ago

10.1016/j.omtn.2021.04.019

Construction of a Myc-associated ceRNA network reveals a prognostic signature in hepatocellular carcinoma
Cited by: 10
Author(s): Dandan Zhang, Yi Shi, Ji‐Bin Liu, Xiaoli Yang, Rui Xin, Huimin Wang, Pei‐Yao Wang, Chengyou Jia, Wenjie Zhang, Yu‐Shui Ma, Da Fu
Software Mentions: 1
Published: about 5 years ago

10.1186/s40478-019-0799-y

Perfusion fixation in brain banking: a systematic review
Cited by: 33
Author(s): Whitney McFadden, Hadley Walsh, Felix Richter, Céline Soudant, Clare Bryce, Patrick R. Hof, Mary Fowkes, John F. Crary, Andrew McKenzie
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-021-85367-3

Vaginal microbiome and serum metabolite differences in late gestation commercial sows at risk for pelvic organ prolapse
Cited by: 9
Author(s): Zoë E Kiefer, Lucas R Koester, Lucas Showman, Jamie M Studer, Amanda Chipman, Aileen F. Keating, Stephan Schmitz‐Esser, Jason W. Ross
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0237701

Evaluating the capacity of species distribution modeling to predict the geographic distribution of the mangrove community in Mexico
Cited by: 14
Author(s): Karla Rodríguez-Medina, Carlos Yáñez‐Arenas, A. Townsend Peterson, Jorge Euán Ávila, Jorge A. Herrera-Silveira
Software Mentions: 1
Published: almost 6 years ago

10.3389/fcimb.2021.598672

The Fecal Microbiota Is Already Altered in Normoglycemic Individuals Who Go on to Have Type 2 Diabetes
Cited by: 22
Author(s): Li Wang, Xuefeng Yu, Xiaoqiang Xu, Jie Ming, Zhifeng Wang, Bin Gao, Ying Xing, Jie Zhou, Jianfang Fu, Tao Liu, Xiangyang Li, Malgorzata Garstka, Xiaokai Wang, Qiuhe Ji
Software Mentions: 1
Published: over 5 years ago

10.1186/s13023-020-01367-y

Natural history of lung function in spinal muscular atrophy
Cited by: 50
Author(s): Camiel A. Wijngaarde, Esther S. Veldhoen, Ruben P A van Eijk, Marloes Stam, Louise Otto, Fay‐Lynn Asselman, Roelie M. Wösten‐van Asperen, Erik H.J. Hulzebos, Laura P. Verweij-van den Oudenrijn, Bart Bartels, Inge Cuppen, Renske I. Wadman, Leonard H. van den Berg, Cornelis K. van der Ent, W. Ludo van der Pol
Software Mentions: 1
Published: about 6 years ago

10.15252/msb.20209469

Mapping the nucleolar proteome reveals a spatiotemporal organization related to intrinsic protein disorder
Cited by: 66
Author(s): Lovisa Stenström, Diana Mahdessian, Christian Gnann, Anthony J. Cesnik, Wei Ouyang, Manuel D. Leonetti, Mathias Uhlén, Sara Cuylen-Haering, Peter Thul, Emma Lundberg
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-021-84827-0

A multi-scale pipeline linking drug transcriptomics with pharmacokinetics predicts in vivo interactions of tuberculosis drugs
Cited by: 11
Author(s): Joseph M. Cicchese, Awanti Sambarey, Denise E. Kirschner, Jennifer J. Linderman, Sriram Chandrasekaran
Software Mentions: 1
Published: over 5 years ago

10.1186/s12920-018-0354-x

HLA and proteasome expression body map
Cited by: 67
Author(s): Sebastian Boegel, Martin Löwer, Thomas Bukur, Patrick Sorn, John C. Castle, Uğur Şahin
Software Mentions: 1
Published: about 8 years ago

10.3389/fcimb.2021.704100

Gut Microbial Diversity in Female Patients With Invasive Mole and Choriocarcinoma and Its Differences Versus Healthy Controls
Cited by: 3
Author(s): Xiaomei Liu, Xue Pan, Hao Líu, Xiaoxin Ma
Software Mentions: 1
Published: almost 5 years ago

10.1186/s12859-015-0477-4

BACA: bubble chArt to compare annotations
Cited by: 16
Author(s): Vittorio Fortino, Harri Alenius, Dario Greco
Software Mentions: 1
Published: over 11 years ago

10.1111/mpp.12900

Single gene enables plant pathogenic Pectobacterium to overcome host‐specific chemical defence
Cited by: 18
Author(s): Tijs J. M. van den Bosch, Outi Niemi, Cornelia U. Welte
Software Mentions: 1
Published: over 6 years ago

10.1186/s13073-021-00946-3

Characterizing DNA methylation signatures and their potential functional roles in Merkel cell carcinoma
Cited by: 10
Author(s): Hemant Gujar, Arjun Mehta, Hongtao Li, Yvonne Tsai, Xianyang Qiu, Daniel J. Weisenberger, Miriam Galvonas Jasiulionis, Gino K In, Gangning Liang
Software Mentions: 1
Published: almost 5 years ago

10.1111/omi.12323

Modified SHI medium supports growth of a disease‐state subgingival polymicrobial community in vitro
Cited by: 8
Author(s): Eleanor I. Lamont, Archita Gadkari, Kristopher A. Kerns, Thao T. To, Diane M. Daubert, Georgios A. Kotsakis, Batbileg Bor, Xuesong He, Jeffrey S. McLean
Software Mentions: 1
Published: over 5 years ago

10.1002/1878-0261.12605

ZNF281/Zfp281 is a target of miR‐1 and counteracts muscle differentiation
Cited by: 12
Author(s): Sara Nicolai, Marco Pieraccioli, Artem Smirnov, Consuelo Pitolli, Lucia Anemona, Alessandro Mauriello, Eleonora Candi, Margherita Annicchiarico-Petruzzelli, Yufang Shi, Ying Wang, Gerry Melino, Giuseppe Raschellà
Software Mentions: 1
Published: over 6 years ago

10.3389/fcimb.2021.644372

Transcriptional Responses of Beauveria bassiana Blastospores Cultured Under Varying Glucose Concentrations
Cited by: 6
Author(s): Gabriel Moura Mascarin, Natasha Sant′Anna Iwanicki, José Luis Ramı́rez, Ìtalo Delalibera, Christopher A. Dunlap
Software Mentions: 1
Published: about 5 years ago

10.18632/aging.202322

Identification of novel SNPs associated with coronary artery disease and birth weight using a pleiotropic cFDR method
Cited by: 1
Author(s): Xinrui Wu, Xu Lin, Qi Li, Zun Wang, Na Zhang, Mengyuan Tian, Xiaolei Wang, Hong‐Wen Deng, Hongzhuan Tan
Software Mentions: 1
Published: over 5 years ago

10.1038/s42003-021-01873-0

The catalytic subunit of Plasmodium falciparum casein kinase 2 is essential for gametocytogenesis
Cited by: 6
Author(s): Eva Hitz, Olivia Grüninger, Armin Passecker, Matthias T. Wyss, Christian Scheurer, Sergio Wittlin, H. P. Beck, Nicolas M. B. Brancucci, Till S. Voss
Software Mentions: 1
Published: over 5 years ago

10.1186/s13024-021-00478-9

Functional microRNA targetome undergoes degeneration-induced shift in the retina
Cited by: 10
Author(s): Joshua Chu-Tan, Adrian V. Cioanca, Zhiping Feng, Yvette Wooff, Ulrike Schümann, Riemke Aggio-Bruce, Hardip R. Patel, Matt Rutar, Katherine M. Hannan, Kostya I. Panov, Jan Provis, Riccardo Natoli
Software Mentions: 1
Published: almost 5 years ago

10.1186/s10020-020-00160-8

Neonatal hair profiling reveals a metabolic phenotype of monochorionic twins with selective intrauterine growth restriction and abnormal umbilical artery flow
Cited by: 11
Author(s): Jing Yang, Wei Yuan, Hongbo Qi, Ning Yin, Yang Yang, Zailing Li, Lili Xu, Xueju Wang, Pengbo Yuan, Luyao Li, Ting-Li Han, Yangyu Zhao
Software Mentions: 1
Published: about 6 years ago

10.3390/ijerph16030369

Accuracy Assessment of the Planar Morphology of Valley Bank Gullies Extracted with High Resolution Remote Sensing Imagery on the Loess Plateau, China
Cited by: 11
Author(s): Yixian Chen, Juying Jiao, Yanhong Wei, Hanqing Zhao, Weijie Yu, Binting Cao, Huibi Xu, Fangchen Yan, Duoyang Wu, Hang Li
Software Mentions: 1
Published: over 7 years ago

10.3390/cancers12051166

Multicenter Evaluation of Independent High-Throughput and RT-qPCR Technologies for the Development of Analytical Workflows for Circulating miRNA Analysis
Cited by: 9
Author(s): Anna Babayan, Martin Neumann, Andrei Herdean, James Shaffer, Melanie Janning, Franca Kobus, Sonja Loges, Francesca Di Pasquale, Mikael Kubista, Martin Schlumpberger, Rita Lampignano, Thomas Krahn, Thomas Schlange, Markus Sprenger-Haussels, Klaus Pantel, Vera Kloten
Software Mentions: 1
Published: about 6 years ago

10.1093/annweh/wxaa080

Evaluation of Methods for Sampling of Staphylococcus aureus and Other Staphylococcus Species from Indoor Surfaces
Cited by: 8
Author(s): Anne Mette Madsen, Hoang U.T. Phan, Mathias Laursen, John Kerr White, Katrine Uhrbrand
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2016.02137

The Resistome of Farmed Fish Feces Contributes to the Enrichment of Antibiotic Resistance Genes in Sediments below Baltic Sea Fish Farms
Cited by: 94
Author(s): Windi I. Muziasari, Leena Pitkänen, Henning Sørum, Robert D. Stedtfeld, James M. Tiedje, Marko Virta
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-021-86244-9

Finding Nemo’s clock reveals switch from nocturnal to diurnal activity
Cited by: 7
Author(s): Gregor Schalm, Kristina Bruns, Nina Drachenberg, Nathalie Geyer, Nicholas S. Foulkes, Cristiano Bertolucci, Gabriele Gerlach
Software Mentions: 1
Published: about 5 years ago

10.1186/s12881-020-01089-9

Mutant POLQ and POLZ/REV3L DNA polymerases may contribute to the favorable survival of patients with tumors with POLE mutations outside the exonuclease domain
Cited by: 2
Author(s): Fangjin Huang, Hisashi Tanaka, Beatrice S. Knudsen, Joanne L. Rutgers
Software Mentions: 1
Published: almost 6 years ago

10.1002/mgg3.536

Molecular diagnosis of somatic overgrowth conditions: A single‐center experience
Cited by: 25
Author(s): Emilie Lalonde, Jessica Ebrahimzadeh, Keith Rafferty, Jennifer Richards‐Yutz, Richard Grant, Erik Toorens, Jennifer Marie Rosado, Erica Schindewolf, Tapan Ganguly, Jennifer M. Kalish, Matthew A. Deardorff, Arupa Ganguly
Software Mentions: 1
Published: over 7 years ago

10.1186/1471-2350-11-9

Impact of gene variants on sex-specific regulation of human Scavenger receptor class B type 1 (SR-BI) expression in liver and association with lipid levels in a population-based study
Cited by: 28
Author(s): Ornit Chiba‐Falek, Marshall Nichols, Sunil Suchindran, John R. Guyton, Geoffrey S. Ginsburg, Elizabeth Barrett‐Connor, Jeanette McCarthy
Software Mentions: 1
Published: over 16 years ago

10.1093/gigascience/giy015

Piggy: a rapid, large-scale pan-genome analysis tool for intergenic regions in bacteria
Cited by: 47
Author(s): Harry A. Thorpe, Sion C. Bayliss, Samuel K. Sheppard, Edward J. Feil
Software Mentions: 1
Published: over 8 years ago

10.3390/molecules24071445

In Silico Investigation of the Anti-Tumor Mechanisms of Epigallocatechin-3-Gallate
Cited by: 17
Author(s): Wang Wang, Xiuhong Xiong, Xue Li, Qinyang Zhang, Wentao Yang, Linfang Du
Software Mentions: 1
Published: about 7 years ago

10.1093/gigascience/giy024

Differential protein expression and post-translational modifications in metronidazole-resistant Giardia duodenalis
Cited by: 37
Author(s): Samantha J. Emery, Louise Baker, Brendan R E Ansell, Mehdi Mirzaei, Paul A. Haynes, Malcom J McConville, Staffan G. Svärd, Aaron R. Jex
Software Mentions: 1
Published: over 8 years ago

10.3389/fcimb.2020.598938

The Lung Microbiome of Three Young Brazilian Patients With Cystic Fibrosis Colonized by Fungi
Cited by: 7
Author(s): Otávio Guilherme Gonçalves de Almeida, Carolina Paulino da Costa Capizzani, Ludmilla Tonani, Patrícia Helena Grizante Barião, Anderson Ferreira da Cunha, Elaine Cristina Pereira De Martinis, Lídia Alice Gomes Monteiro Marin Torres, Márcia Regina von Zeska Kress
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-021-86590-8

Dynamic bacterial community response to Akashiwo sanguinea (Dinophyceae) bloom in indoor marine microcosms
Cited by: 9
Author(s): Seung Won Jung, JunSu Kang, Joon‐Sang Park, Hyoung Min Joo, Sung-Suk Suh, Di Kang, Taek-Kyun Lee, Hyun-Jung Kim
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-021-86304-0

A novel causality-centrality-based method for the analysis of the impacts of air pollutants on PM2.5 concentrations in China
Cited by: 1
Author(s): Bo-Cheng Wang
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-021-86369-x

Integrating buccal and occlusal dental microwear with isotope analyses for a complete paleodietary reconstruction of Holocene populations from Hungary
Cited by: 5
Author(s): Raquel Hernando, Beatriz Gamarra, Ashley McCall, Olivia Cheronet, Daniel Fernandes, Kendra Sirak, Ryan Schmidt, Marina Lozano, Tamás Szeniczey, Tamás Hajdu, Annamária Bárány, András Kalli, Eszter K Tutkovics, Kitti Köhler, Krisztián Kiss, Judit Koós, Piroska Csengeri, Ágnes Király, Antónia Horváth, Melinda L Hajdu, K. Tóth, R Patay, Robin N. M. Feeney, Ron Pinhasi
Software Mentions: 1
Published: about 5 years ago

10.1186/s12881-019-0909-5

Copy number variation is highly correlated with differential gene expression: a pan-cancer study
Cited by: 151
Author(s): Xin Shao, Ning Lv, Jie Liao, Jinbo Long, Rui Xue, Ai Ni, Donghang Xu, Xiaohui Fan
Software Mentions: 1
Published: over 6 years ago

10.3390/molecules24152828

Variability of Bioactive Glucosinolates, Isothiocyanates and Enzyme Patterns in Horseradish Hairy Root Cultures Initiated from Different Organs
Cited by: 9
Author(s): Regina Bertóti, Andrea Böszörményi, Ágnes Alberti, Szabolcs Béni, Márta M-Hamvas, Éva Szőke, Gábor Vasas, Sándor Gonda
Software Mentions: 1
Published: almost 7 years ago

10.1186/s12909-021-02576-0

Willingness to volunteer and readiness to practice of undergraduate medical students during the COVID-19 pandemic: a cross-sectional survey in Indonesia
Cited by: 39
Author(s): Gilbert Lazarus, Ardi Findyartini, Azis Muhammad Putera, Nico Gamalliel, David Nugraha, Imam Adli, Jason Phowira, Lyanna Azzahra, Bagas Ariffandi, Indah Suci Widyahening
Software Mentions: 1
Published: over 5 years ago

10.3390/molecules26195808

Optimization of HS-SPME for GC-MS Analysis and Its Application in Characterization of Volatile Compounds in Sweet Potato
Cited by: 14
Author(s): Rong Zhang, Cuiming Tang, Biao Jiang, Xueying Mo, Zhangying Wang
Software Mentions: 1
Published: over 4 years ago

10.3390/molecules24010203

Biosynthetic Gene Content of the ‘Perfume Lichens’ Evernia prunastri and Pseudevernia furfuracea
Cited by: 33
Author(s): Anjuli Calchera, Francesco Dal Grande, Helge B. Bode, Imke Schmitt
Software Mentions: 1
Published: over 7 years ago

10.3389/fcimb.2019.00202

How Ocular Surface Microbiota Debuts in Type 2 Diabetes Mellitus
Cited by: 49
Author(s): Siqi Li, Guoguo Yi, Hui Peng, Zhenhao Li, Shuze Chen, Zhong Huang, Yifan Chen, Zhoucheng Wang, Qixin Deng, Min Fu
Software Mentions: 1
Published: almost 7 years ago

10.3390/molecules26051278

Point Mutations of Nicotinic Receptor α1 Subunit Reveal New Molecular Features of G153S Slow-Channel Myasthenia
Cited by: 2
Author(s): Denis S. Kudryavtsev, Anastasia Isaeva, Daria Barkova, Ekaterina N. Spirova, Renata Mukhutdinova, Igor E. Kasheverov, Victor I. Tsetlin
Software Mentions: 1
Published: over 5 years ago

10.3390/molecules25215002

Distribution of Protein Precipitation Capacity within Variable Proanthocyanidin Fingerprints
Cited by: 9
Author(s): Milla Marleena Leppä, Juuso Erik Laitila, Juha‐Pekka Salminen
Software Mentions: 1
Published: over 5 years ago

10.1186/s12909-018-1331-y

The Next Generation Scientist program: capacity-building for future scientific leaders in low- and middle-income countries
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Author(s): Goonaseelan Pillai, Kelly Chibale, Edwin C. Constable, Akiko Nathalie Keller, Marcelo M. Gutierrez, Fareed Mirza, Christian Sengstag, Collen Masimirembwa, Paolo Denti, Gary Maartens, Michèle Ramsay, Bernhards Ogutu, Eyasu Makonnen, Richard K. Gordon, Carlos Gil Ferreira, F.A. Goldbaum, Wim Degrave, J. Michael Spector, Brigitta Tadmor, Hedwig J. Kaiser
Software Mentions: 1
Published: over 7 years ago

10.1038/s42003-021-01767-1

A versatile microfluidic platform measures hyphal interactions between Fusarium graminearum and Clonostachys rosea in real-time
Cited by: 11
Author(s): Alejandro Gimeno, Claire E. Stanley, Zacharie Ngamenie, Ming-Hui Hsung, Florian Walder, Stefanie S. Schmieder, Saskia Bindschedler, Pilar Junier, Beat Keller, Susanne Vogelgsang
Software Mentions: 1
Published: over 5 years ago

10.3390/molecules26051398

Signaling Pathways Regulated by Silica Nanoparticles
Cited by: 12
Author(s): Shih-Yi Hsu, Robert Morris, Feng Cheng
Software Mentions: 1
Published: over 5 years ago

10.1155/2017/5724046

Differential Regulation of Cardiac Function and Intracardiac Cytokines by Rapamycin in Healthy and Diabetic Rats
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Author(s): Christian Lück, Vincent G. DeMarco, Abuzar Mahmood, Madhavi P. Gavini, Lakshmi Pulakat
Software Mentions: 1
Published: over 9 years ago

10.1245/s10434-018-6396-7

A Population-based Study on Lymph Node Retrieval in Patients with Esophageal Cancer: Results from the Dutch Upper Gastrointestinal Cancer Audit
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Author(s): Leonie R. van der Werf, Johan L. Dikken, Mark I. van Berge Henegouwen, Valery Lemmens, G. Nieuwenhuijzen, Bas P. L. Wijnhoven
Software Mentions: 1
Published: over 8 years ago

10.3390/molecules22071097

Evaluation of Marine Microalga Diacronema vlkianum Biomass Fatty Acid Assimilation in Wistar Rats
Cited by: 7
Author(s): Cristina de Mello-Sampayo, Angela Paterna, Ambra Polizzi, Diana Duarte, Irineu Batista, Rui Pinto, Patrícia Gonçalves, Anabela Raymundo, Ana Paula Batista, Luísa Gouveia, Beatriz Silva‐Lima, Narcisa M. Bandarra
Software Mentions: 1
Published: almost 9 years ago

10.3390/molecules25122954

Metabolomics of Myrcia bella Populations in Brazilian Savanna Reveals Strong Influence of Environmental Factors on Its Specialized Metabolism
Cited by: 12
Author(s): Luiz Leonardo Saldanha, Pierre‐Marie Allard, Adlin Afzan, Fernanda de Souza Rosa de Pereira Melo, Laurence Marcourt, Emerson Ferreira Queiroz, Wagner Vilegas, Cláudia Maria Furlan, Anne Lígia Dokkedal, Jean‐Luc Wolfender
Software Mentions: 1
Published: almost 6 years ago

10.1111/1755-0998.12533

Detecting the movement and spawning activity of bigheaded carps with environmental <scp>DNA</scp>
Cited by: 65
Author(s): Richard A. Erickson, Christopher B. Rees, Alison A. Coulter, Christopher M. Merkes, S. Grace McCalla, Katherine F. Touzinsky, Liza R. Walleser, Reuben R. Goforth, Jon J. Amberg
Software Mentions: 1
Published: about 10 years ago

10.3389/fcimb.2020.00419

The Salmonella Effector SseK3 Targets Small Rab GTPases
Cited by: 16
Author(s): Jiyao Gan, Nichollas E. Scott, Joshua Patrick Mark Newson, Rachelia R Wibawa, Tania Wong Fok Lung, Georgina L. Pollock, Garrett Z. Ng, Ian R. van Driel, Jaclyn S. Pearson, Elizabeth L. Hartland, Cristina Giogha
Software Mentions: 1
Published: almost 6 years ago

10.1038/s42003-021-02548-6

Cellular 3D-reconstruction and analysis in the human cerebral cortex using automatic serial sections
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Author(s): Nick Yin Larsen, Xixia Li, Xueke Tan, Gang Ji, Jing Lin, Grażyna Rajkowska, Jesper Møller, Ninna Vihrs, Jon Sporring, Fei Sun, Jens Randel Nyengaard
Software Mentions: 1
Published: almost 5 years ago

10.3389/fcimb.2021.637836

Identification and Phenotypic Characterization of Hsp90 Phosphorylation Sites That Modulate Virulence Traits in the Major Human Fungal Pathogen Candida albicans
Cited by: 9
Author(s): Leenah M. Alaalm, Julia L. Crunden, Mark C Butcher, Ulrike Obst, Ryann Whealy, Carolyn Williamson, Heath O’Brien, Christiane Schaffitzel, Gordon Ramage, James Spencer, Stephanie Diezmann
Software Mentions: 1
Published: almost 5 years ago

10.1093/gigascience/giab004

FASTQuick: rapid and comprehensive quality assessment of raw sequence reads
Cited by: 0
Author(s): Fan Zhang, Hyun Min Kang
Software Mentions: 1
Published: over 5 years ago

10.1186/s12909-020-1984-1

Assessment of third-year medical students’ comfort and preparedness for navigating challenging clinical scenarios with patients, peers, and supervisors
Cited by: 1
Author(s): Anna R. Kahkoska, Tracy M. Deselm, Laura Young
Software Mentions: 1
Published: over 6 years ago

10.3389/fimmu.2021.666543

Innate Immune Responses to Wildtype and Attenuated Sheeppox Virus Mediated Through RIG-1 Sensing in PBMC In-Vitro
Cited by: 2
Author(s): Tesfaye Rufael, Richard T. Kangethe, Francisco J. Berguido, Tirumala Bharani Kumar Settypalli, Yang Liu, Reingard Grabherr, Angelika Loitsch, Elena L. Sassu, Rudolf Pichler, Giovanni Cattoli, Adama Diallo, Viskam Wijewardana, Charles Euloge Lamien
Software Mentions: 1
Published: about 5 years ago

10.1186/s12915-020-0760-3

A metabolic switch regulates the transition between growth and diapause in C. elegans
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Author(s): Sider Penkov, Bharath Kumar Raghuraman, Cihan Erkut, Jana Oertel, Roberta Galli, Eduardo Jacobo Miranda Ackerman, Daniela Vorkel, Jean‐Marc Verbavatz, Edmund Koch, Karim Fahmy, Andrej Shevchenko, Teymuras V. Kurzchalia
Software Mentions: 1
Published: about 6 years ago

10.3389/fncel.2017.00401

Differentiation-Dependent Motility-Responses of Developing Neural Progenitors to Optogenetic Stimulation
Cited by: 3
Author(s): Tímea Köhidi, Attila Jády, Károly Markó, Noémi Papp, Tibor Andrási, Zsuzsanna Környei, Emı́lia Madarász
Software Mentions: 1
Published: over 8 years ago

10.1093/gigascience/giab050

SCIGA: Software for large-scale, single-cell immunoglobulin repertoire analysis
Cited by: 0
Author(s): Haocheng Ye, Lin Cheng, Bin Ju, Gang Xu, Yang Liu, Shuye Zhang, Lifei Wang, Zheng Zhang
Software Mentions: 1
Published: almost 5 years ago

10.1002/glia.23144

Suppression of SNARE-dependent exocytosis in retinal glial cells and its effect on ischemia-induced neurodegeneration
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Author(s): Lysann Wagner, Thomas Pannicke, Vanessa Rupprecht, Ina Frommherz, Cornelia Volz, Peter Illéš, Johannes Hirrlinger, Herbert Jägle, Veronica Egger, Philip G. Haydon, Frank W. Pfrieger, Antje Grosche
Software Mentions: 1
Published: about 9 years ago

10.1002/glia.24048

Elovl5 is required for proper action potential conduction along peripheral myelinated fibers
Cited by: 6
Author(s): Eriola Hoxha, Ilaria Balbo, Roberta Parolisi, Matteo Audano, Francesca Montarolo, Francesco Ravera, Michela Guglielmotto, Luísa Muratori, Stefania Raimondo, Eleonora DiGregorio, Annalisa Buffo, Alfredo Brusco, Barbara Borroni, Nico Mitro, Donatella Caruso, Filippo Tempia
Software Mentions: 1
Published: almost 5 years ago

10.1038/s42003-021-01801-2

Isoginkgetin derivative IP2 enhances the adaptive immune response against tumor antigens
Cited by: 7
Author(s): Romain Darrigrand, Alison Pierson, Marine Rouillon, Dolor Renko, Mathilde Boulpicante, David Bouyssié, Emmanuelle Mouton-Barbosa, Julien Marcoux, Camille Garcia, Michael Ghosh, Mouâd Alami, Sébastien Apcher
Software Mentions: 1
Published: over 5 years ago

10.1074/mcp.RA118.001307

The mRNA-bound Proteome of Leishmania mexicana: Novel Genetic Insight into an Ancient Parasite
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Author(s): Luis Miguel De Pablos, Tiago Luiz Ferreira, Adam Dowle, Sarah Forrester, Ewan Parry, Katherine Newling, Pegine Walrad
Software Mentions: 1
Published: almost 7 years ago

10.1186/1741-7015-11-35

A low-cost method to assess the epidemiological importance of individuals in controlling infectious disease outbreaks
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Author(s): Timo Smieszek, Marcel Salathé
Software Mentions: 1
Published: over 13 years ago

10.1111/gcbb.12419

Could Miscanthus replace maize as the preferred substrate for anaerobic digestion in the United Kingdom? Future breeding strategies
Cited by: 10
Author(s): Sarah Purdy, Anne Maddison, Christopher Nunn, Ana L. Winters, Emma Timms-Taravella, Cerys Jones, John Clifton‐Brown, Iain S. Donnison, Joe Gallagher
Software Mentions: 1
Published: over 9 years ago

10.1074/mcp.RA119.001472

Multibatch TMT Reveals False Positives, Batch Effects and Missing Values
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Author(s): Alejandro Brenes, Jens Hukelmann, Dalila Bensaddek
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-021-87258-z

Gaze-pattern similarity at encoding may interfere with future memory
Cited by: 1
Author(s): Nathalie klein Selle, Matthias Gamer, Yoni Pertzov
Software Mentions: 1
Published: about 5 years ago

10.1186/s12916-018-1214-4

Fitness to practise sanctions in UK doctors are predicted by poor performance at MRCGP and MRCP(UK) assessments: data linkage study
Cited by: 14
Author(s): Richard Wakeford, Kasia Ludka, Katherine Woolf, I. C. McManus
Software Mentions: 1
Published: over 7 years ago

10.1017/gheg.2020.3

The Nigerian Bioinformatics and Genomics Network (NBGN): a collaborative platform to advance bioinformatics and genomics in Nigeria
Cited by: 7
Author(s): Segun Fatumo, ThankGod Echezona Ebenezer, Chinwe Ekenna, Itunuoluwa Isewon, Umar Ahmad, Charles Oluwaseun Adetunji, Elijah Kolawole Oladipo, Marion O. Adebiyi, Ezekiel Adebiyi, Oyekanmi Nashiru, Nigerian Bioinformatics
Software Mentions: 1
Published: over 6 years ago

10.1186/s12916-016-0764-6

Characteristics and knowledge synthesis approach for 456 network meta-analyses: a scoping review
Cited by: 64
Author(s): Wasifa Zarin, Areti Angeliki Veroniki, Vera Nincic, Afshin Vafaei, Emily Reynen, Sanober S. Motiwala, Jesmin Antony, Shannon Sullivan, Patricia Rios, Caitlin Daly, Joycelyne Ewusie, Μαρία Πετροπούλου, Adriani Nikolakopoulou, Anna Chaimani, Georgia Salanti, Sharon E. Straus, Andrea C. Tricco
Software Mentions: 1
Published: over 9 years ago

10.1016/j.molcel.2018.05.033

mRNA Deadenylation Is Coupled to Translation Rates by the Differential Activities of Ccr4-Not Nucleases
Cited by: 176
Author(s): M. Webster, Ying Hsin Chen, James A.W. Stowell, Najwa Alhusaini, Thomas J. Sweet, Brenton R. Graveley, Jeff Coller, Lori A. Passmore
Software Mentions: 1
Published: about 8 years ago

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