cran: ggplot2 | Projects | Ecosyste.ms: Papers

10.1371/journal.pntd.0007832

Field study of the improved rapid sand fly exposure test in areas endemic for canine leishmaniasis
Cited by: 8
Author(s): Laura Willen, Tereza Leštinová, Barbora Kalousková, Petra Sumová, Tatiana Spitzová, Rita Velez, E. Domenech, Ondřej Vaněk, Montserrat Gállego, Pascal Mertens, Petr Volf
Software Mentions: 1
Published: almost 7 years ago

10.18632/aging.101767

A novel six-microRNA-based model to improve prognosis prediction of breast cancer
Cited by: 32
Author(s): Jianguo Lai, Hongli Wang, Zihao Pan, Fengxi Su
Software Mentions: 1
Published: over 7 years ago

10.1186/s12885-021-07837-1

Novel immune-related genes in the tumor microenvironment with prognostic value in breast cancer
Cited by: 7
Author(s): Wen Tan, Maomao Liu, Liangshan Wang, Yang Guo, Chunhong Wei, Shuqi Zhang, Chengyu Luo, Nan Liu
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pntd.0005337

Intensive trapping of blood-fed Anopheles darlingi in Amazonian Peru reveals unexpectedly high proportions of avian blood-meals
Cited by: 36
Author(s): Marta Moreno, Marlon P. Saavedra, Sara A. Bickersmith, Catharine Prussing, Adrian Michalski, Carlos Tong Rios, Joseph M. Vinetz, Jan E. Conn
Software Mentions: 1
Published: over 9 years ago

10.3389/fmicb.2021.695167

Fungal Interactions and Host Tree Preferences in the Spruce Bark Beetle Ips typographus
Cited by: 13
Author(s): Sifat Munim Tanin, D Kandasamy, Paal Krokene
Software Mentions: 1
Published: over 5 years ago

10.18632/aging.103465

Systems biology approach to exploring the effect of cyclic stretching on cardiac cell physiology
Cited by: 0
Author(s): Chien Cheng Chen, Tai‐Chee Wong, Tzu Yun Chin, Wen Hsien Lee, Chan Yen Kuo, Yi Chiung Hsu
Software Mentions: 1
Published: about 6 years ago

10.1038/s42003-020-1002-5

Single platelet variability governs population sensitivity and initiates intrinsic heterotypic responses
Cited by: 7
Author(s): Maaike S. A. Jongen, Ben D. MacArthur, Nicola A. Englyst, Jonathan West
Software Mentions: 1
Published: over 6 years ago

10.1186/s12885-021-08108-9

Multi gene mutation signatures in colorectal cancer patients: predict for the diagnosis, pathological classification, staging and prognosis
Cited by: 19
Author(s): Yan Zhuang, Hailong Wang, Da Jiang, Ying Liu, Lixia Feng, Caijuan Tian, Mingyu Pu, Xiaowei Wang, Jiangyan Zhang, Y. Hu, Pengfei Liu
Software Mentions: 1
Published: over 5 years ago

10.1186/s12885-021-08171-2

Comparison of breast cancer surrogate subtyping using a closed-system RT-qPCR breast cancer assay and immunohistochemistry on 100 core needle biopsies with matching surgical specimens
Cited by: 7
Author(s): Slavica Janeva, Toshima Z. Parris, Salmir Nasic, Shahin De Lara, Karin Larsson, Riccardo A. Audisio, Roger Olofsson Bagge, Anikó Kovács
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-021-86244-9

Finding Nemo’s clock reveals switch from nocturnal to diurnal activity
Cited by: 7
Author(s): Gregor Schalm, Kristina Bruns, Nina Drachenberg, Nathalie Geyer, Nicholas S. Foulkes, Cristiano Bertolucci, Gabriele Gerlach
Software Mentions: 1
Published: over 5 years ago

10.1186/s12859-016-1250-z

GeneSCF: a real-time based functional enrichment tool with support for multiple organisms
Cited by: 78
Author(s): Santhilal Subhash, Chandrasekhar Kanduri
Software Mentions: 1
Published: about 10 years ago

10.1161/CIRCINTERVENTIONS.115.002988

Quantification of the Effect of Pressure Wire Drift on the Diagnostic Performance of Fractional Flow Reserve, Instantaneous Wave-Free Ratio, and Whole-Cycle Pd/Pa
Cited by: 42
Author(s): Christopher Cook, Yousif Ahmad, Matthew Shun-Shin, Sukhjinder Nijjer, Ricardo Petraco, Rasha Al‐Lamee, Jamil Mayet, Dárrel P. Francis, Sayan Sen, Justin E. Davies
Software Mentions: 1
Published: over 10 years ago

10.1093/gigascience/giab004

FASTQuick: rapid and comprehensive quality assessment of raw sequence reads
Cited by: 0
Author(s): Fan Zhang, Hyun Min Kang
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2021.624980

Seasonal Variation in Viral Infection Rates and Cell Sizes of Infected Prokaryotes in a Large and Deep Freshwater Lake (Lake Biwa, Japan)
Cited by: 4
Author(s): Shang Shen, Yoshihisa Shimizu
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-021-86590-8

Dynamic bacterial community response to Akashiwo sanguinea (Dinophyceae) bloom in indoor marine microcosms
Cited by: 9
Author(s): Seung Won Jung, JunSu Kang, Joon‐Sang Park, Hyoung Min Joo, Sung-Suk Suh, Di Kang, Taek-Kyun Lee, Hyun-Jung Kim
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-021-86304-0

A novel causality-centrality-based method for the analysis of the impacts of air pollutants on PM2.5 concentrations in China
Cited by: 1
Author(s): Bo-Cheng Wang
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pcbi.1008119

Ten simple rules to increase computational skills among biologists with Code Clubs
Cited by: 5
Author(s): Ada K. Hagan, Nicholas A. Lesniak, Marcy J. Balunas, Lucas Bishop, William L. Close, Matthew K. Doherty, Amanda G. Elmore, Kaitlin J. Flynn, Geoffrey D. Hannigan, Charlie C. Koumpouras, Matthew L. Jenior, Ariangela J. Kozik, Kathryn McBride, Samara Rifkin, Joshua M. A. Stough, Kelly L Sovacool, Marc A. Sze, Sarah Tomkovich, Begüm D. Topçuoğlu, Patrick D. Schloss
Software Mentions: 1
Published: about 6 years ago

10.1093/gigascience/giab050

SCIGA: Software for large-scale, single-cell immunoglobulin repertoire analysis
Cited by: 0
Author(s): Haocheng Ye, Lin Cheng, Bin Ju, Gang Xu, Yang Liu, Shuye Zhang, Lifei Wang, Zheng Zhang
Software Mentions: 1
Published: about 5 years ago

10.1002/glia.23144

Suppression of SNARE-dependent exocytosis in retinal glial cells and its effect on ischemia-induced neurodegeneration
Cited by: 13
Author(s): Lysann Wagner, Thomas Pannicke, Vanessa Rupprecht, Ina Frommherz, Cornelia Volz, Peter Illéš, Johannes Hirrlinger, Herbert Jägle, Veronica Egger, Philip G. Haydon, Frank W. Pfrieger, Antje Grosche
Software Mentions: 1
Published: over 9 years ago

10.1002/glia.24048

Elovl5 is required for proper action potential conduction along peripheral myelinated fibers
Cited by: 6
Author(s): Eriola Hoxha, Ilaria Balbo, Roberta Parolisi, Matteo Audano, Francesca Montarolo, Francesco Ravera, Michela Guglielmotto, Luísa Muratori, Stefania Raimondo, Eleonora DiGregorio, Annalisa Buffo, Alfredo Brusco, Barbara Borroni, Nico Mitro, Donatella Caruso, Filippo Tempia
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pcbi.1006468

Wrangling distributed computing for high-throughput environmental science: An introduction to HTCondor
Cited by: 10
Author(s): Richard A. Erickson, Michael N. Fienen, S. Grace McCalla, Emily L. Weiser, Melvin L. Bower, Jonathan M. Knudson, Greg Thain
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pcbi.1003638

Are Current Atomistic Force Fields Accurate Enough to Study Proteins in Crowded Environments?
Cited by: 117
Author(s): Dražen Petrov, Bojan Žagrović
Software Mentions: 1
Published: over 12 years ago

10.1038/s41598-021-86369-x

Integrating buccal and occlusal dental microwear with isotope analyses for a complete paleodietary reconstruction of Holocene populations from Hungary
Cited by: 5
Author(s): Raquel Hernando, Beatriz Gamarra, Ashley McCall, Olivia Cheronet, Daniel Fernandes, Kendra Sirak, Ryan Schmidt, Marina Lozano, Tamás Szeniczey, Tamás Hajdu, Annamária Bárány, András Kalli, Eszter K Tutkovics, Kitti Köhler, Krisztián Kiss, Judit Koós, Piroska Csengeri, Ágnes Király, Antónia Horváth, Melinda L Hajdu, K. Tóth, R Patay, Robin N. M. Feeney, Ron Pinhasi
Software Mentions: 1
Published: over 5 years ago

10.1111/gcbb.12419

Could Miscanthus replace maize as the preferred substrate for anaerobic digestion in the United Kingdom? Future breeding strategies
Cited by: 10
Author(s): Sarah Purdy, Anne Maddison, Christopher Nunn, Ana L. Winters, Emma Timms-Taravella, Cerys Jones, John Clifton‐Brown, Iain S. Donnison, Joe Gallagher
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pcbi.1006360

ggsashimi: Sashimi plot revised for browser- and annotation-independent splicing visualization
Cited by: 137
Author(s): Diego Garrido-Martín, Emilio Palumbo, Roderic Guigó, Alessandra Breschi
Software Mentions: 1
Published: about 8 years ago

10.1186/s12860-021-00344-y

Identification and characterization of the LRR repeats in plant LRR-RLKs
Cited by: 10
Author(s): Tianshu Chen
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pcbi.1004890

A Crowdsourcing Approach to Developing and Assessing Prediction Algorithms for AML Prognosis
Cited by: 29
Author(s): David Noren, Byron L. Long, Raquel Norel, Kahn Rrhissorrakrai, Kenneth R. Hess, Chenyue W. Hu, Alex Bisberg, André Schultz, Erik Engquist, Li Liu, Xihui Lin, Gregory M. Chen, Honglei Xie, Geoffrey A. M. Hunter, Paul C. Boutros, О. А. Степанов, Thea Norman, Stephen H. Friend, Gustavo Stolovitzky, Steven M. Kornblau, Amina A. Qutub
Software Mentions: 1
Published: over 10 years ago

10.1017/gheg.2020.3

The Nigerian Bioinformatics and Genomics Network (NBGN): a collaborative platform to advance bioinformatics and genomics in Nigeria
Cited by: 7
Author(s): Segun Fatumo, ThankGod Echezona Ebenezer, Chinwe Ekenna, Itunuoluwa Isewon, Umar Ahmad, Charles Oluwaseun Adetunji, Elijah Kolawole Oladipo, Marion O. Adebiyi, Ezekiel Adebiyi, Oyekanmi Nashiru, Nigerian Bioinformatics
Software Mentions: 1
Published: almost 7 years ago

10.1007/s12031-017-0898-9

Selection and Prioritization of Candidate Drug Targets for Amyotrophic Lateral Sclerosis Through a Meta-Analysis Approach
Cited by: 20
Author(s): Giovanna Morello, Antonio Gianmaria Spampinato, Francesca Luisa Conforti, Velia D’Agata, Sebastiano Cavallaro
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pcbi.1006991

Neurogranin stimulates Ca2+/calmodulin-dependent kinase II by suppressing calcineurin activity at specific calcium spike frequencies
Cited by: 16
Author(s): Lu Li, Massimo Lai, S P Cole, Nicolas Le Novère, Stuart J. Edelstein
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms21093088

Genome-Wide Identification and Characterization of UTR-Introns of Citrus sinensis
Cited by: 4
Author(s): Xiaobao Shi, Junwei Wu, Raphael Anue Mensah, Na Tian, Jiapeng Liu, Fan Liu, Jialan Chen, Jing-Ru Che, Yifeng Guo, Binghua Wu, Guoqiang Zhong, Chunzhen Cheng
Software Mentions: 1
Published: over 6 years ago

10.7554/eLife.30674

DDM1 and Lsh remodelers allow methylation of DNA wrapped in nucleosomes
Cited by: 89
Author(s): David Lyons, Daniel Zilberman
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pcbi.1004723

Evolutionary Genomics Suggests That CheV Is an Additional Adaptor for Accommodating Specific Chemoreceptors within the Chemotaxis Signaling Complex
Cited by: 33
Author(s): Davi R. Ortega, Igor B. Zhulin
Software Mentions: 1
Published: over 10 years ago

10.1136/gutjnl-2017-315631

Single-cell RNAseq reveals seven classes of colonic sensory neuron
Cited by: 181
Author(s): James R.F. Hockley, Toni S Taylor, Gerard Callejo, Anna Wilbrey, Alex Gutteridge, Karsten Bach, Wendy J. Winchester, D Bulmer, Gordon McMurray, Ewan St. John Smith
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pcbi.1006099

Biogeography and environmental conditions shape bacteriophage-bacteria networks across the human microbiome
Cited by: 33
Author(s): Geoffrey D. Hannigan, Melissa B. Duhaime, Danai Koutra, Patrick D. Schloss
Software Mentions: 1
Published: over 8 years ago

10.1186/s12866-020-02041-w

The Epidome - a species-specific approach to assess the population structure and heterogeneity of Staphylococcus epidermidis colonization and infection
Cited by: 8
Author(s): Amalie Katrine Rendboe, Thor Bech Johannesen, Anna Cäcilia Ingham, Emeli Månsson, Søren Iversen, Sharmin Baig, Sofie Marie Edslev, Jørgen Skov Jensen, Bo Söderquist, Paal Skytt Andersen, Marc Stegger
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12866-021-02204-3

Deviations in the gut microbiota of neonates affected by maternal group B Streptococcus colonization
Cited by: 4
Author(s): Yuefeng Li, Xue-lei Gong, Su-xiang Chen, Kejian Wang, Yan-hua Jiang
Software Mentions: 1
Published: over 5 years ago

10.1186/s12859-021-04324-z

LLAMA: a robust and scalable machine learning pipeline for analysis of large scale 4D microscopy data: analysis of cell ruffles and filopodia
Cited by: 1
Author(s): James G. Lefevre, Yvette W. H. Koh, Adam A. Wall, Nicholas D. Condon, Jennifer L. Stow, Nicholas A. Hamilton
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pbio.2007044

CRISPR screening using an expanded toolkit of autophagy reporters identifies TMEM41B as a novel autophagy factor
Cited by: 103
Author(s): Christopher J. Shoemaker, T.Q. Huang, N. Weir, Nicole J. Polyakov, Sebastian W. Schultz, Vladimir Denic
Software Mentions: 1
Published: over 7 years ago

10.18632/aging.103509

Circadian clock is associated with tumor microenvironment in kidney renal clear cell carcinoma
Cited by: 20
Author(s): Liangcheng Zhou, Zundu Luo, Zuwei Li, Qinying Huang
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pbio.3000632

A widespread family of heat-resistant obscure (Hero) proteins protect against protein instability and aggregation
Cited by: 44
Author(s): Kaoru Tsuboyama, Tatsuya Osaki, Eriko Matsuura-Suzuki, Hiroko Kozuka‐Hata, Yuki Okada, Masaaki Oyama, Yoshiho Ikeuchi, Shigeo Iwasaki, Yukihide Tomari
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pbio.1002555

Phosphorylation of Def Regulates Nucleolar p53 Turnover and Cell Cycle Progression through Def Recruitment of Calpain3
Cited by: 29
Author(s): Yihong Guan, Delai Huang, Feng Chen, Ce Gao, Ting Tao, Hui Shi, Shanshan Zhao, Zuyuan Liao, Li Jan Lo, Yingchun Wang, Jun Chen, Jinrong Peng
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pbio.2005189

Tissue-specific degradation of essential centrosome components reveals distinct microtubule populations at microtubule organizing centers
Cited by: 58
Author(s): Maria D. Sallee, Jennifer C. Zonka, Taylor D. Skokan, Brian Raftrey, Jessica L. Feldman
Software Mentions: 1
Published: about 8 years ago

10.1002/ece3.2878

Stable isotope analyses-A method to distinguish intensively farmed from wild frogs
Cited by: 15
Author(s): Carolin Dittrich, Ulrich Struck, Mark‐Oliver Rödel
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pbio.1002452

Functional Sites Induce Long-Range Evolutionary Constraints in Enzymes
Cited by: 92
Author(s): Benjamin R. Jack, Austin G. Meyer, Julián Echave, Claus O. Wilke
Software Mentions: 1
Published: over 10 years ago

10.1186/s12866-021-02103-7

Age-related changes of microbiota in midlife associated with reduced saccharolytic potential: an in vitro study
Cited by: 14
Author(s): Junkui Chen, Xionge Pi, Wei Liu, Qianming Ding, Xin Wang, Weiguo Jia, Liying Zhu
Software Mentions: 1
Published: over 5 years ago

10.1186/s40478-018-0624-z

The relevance of cerebrospinal fluid α-synuclein levels to sporadic and familial Alzheimer’s disease
Cited by: 38
Author(s): Daniel Twohig, Elena Rodriguez‐Vieitez, Sigrid Botne Sando, Guro Berge, Camilla Lauridsen, Ina Møller, Gøril Rolfseng Grøntvedt, Geir Bråthen, Kalicharan Patra, Guojun Bu, Tammie L.S. Benzinger, Celeste M. Karch, Anne M. Fagan, John C. Morris, Randall J. Bateman, Agneta Nordberg, Linda R. White, Henrietta M. Nielsen
Software Mentions: 1
Published: almost 8 years ago

10.1186/s12866-020-01729-3

The mismatch repair system (mutS and mutL) in Acinetobacter baylyi ADP1
Cited by: 5
Author(s): Hua Zhou, Linyue Zhang, Qingye Xu, Linghong Zhang, Yunsong Yu, Xiaoting Hua
Software Mentions: 1
Published: over 6 years ago

10.18632/aging.202639

The age pattern of the male-to-female ratio in mortality from COVID-19 mirrors that of cardiovascular disease in the general population
Cited by: 10
Author(s): Ila Nimgaonkar, Linda Valeri, Ezra Süsser, Sabiha Hussain, Jag Sunderram, Abraham Aviv
Software Mentions: 1
Published: over 5 years ago

10.1161/CIRCGENETICS.115.001302

Metabolic Characterization of a Rare Genetic Variation Within APOC3 and Its Lipoprotein Lipase–Independent Effects
Cited by: 27
Author(s): Fotios Drenos, George Davey Smith, Mika Ala‐Korpela, Johannes Kettunen, Peter Würtz, Pasi Soininen, Antti J. Kangas, Caroline Dale, Debbie A. Lawlor, Tom R. Gaunt, Juan-Pablo Casas, Nicholas J. Timpson
Software Mentions: 1
Published: over 10 years ago

10.1186/s12885-015-1909-2

Inhibiting inducible miR-223 further reduces viable cells in human cancer cell lines MCF-7 and PC3 treated by celastrol
Cited by: 25
Author(s): Lu Cao, Xue Zhang, Fanfan Cao, Ying Wang, Yu-fan Shen, Chen Yang, Georges Uzan, Bin Peng, Denghai Zhang
Software Mentions: 1
Published: almost 11 years ago

10.1186/s12866-016-0924-z

Nationwide molecular epidemiology of methicillin-resistant Staphylococcus aureus responsible for horse infections in France
Cited by: 19
Author(s): François Guérin, Marguerite Fines-Guyon, Pierrick Meignen, Géraldine Delente, Caroline Fondrinier, Nancy Bourdon, Vincent Cattoir, Albertine Léon
Software Mentions: 1
Published: over 9 years ago

10.1186/s13099-020-00371-8

Metagenomic analysis of gut microbiome and resistome of diarrheal fecal samples from Kolkata, India, reveals the core and variable microbiota including signatures of microbial dark matter
Cited by: 28
Author(s): Rituparna De, Asish K. Mukhopadhyay, Shanta Dutta
Software Mentions: 1
Published: over 6 years ago

10.1186/s13099-021-00409-5

Ectopic gut colonization: a metagenomic study of the oral and gut microbiome in Crohn’s disease
Cited by: 24
Author(s): Shijia Hu, Eileen Png, Michelle Gowans, David Ong, Paola Flórez de Sessions, Jié Song, Niranjan Nagarajan
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-021-87258-z

Gaze-pattern similarity at encoding may interfere with future memory
Cited by: 1
Author(s): Nathalie klein Selle, Matthias Gamer, Yoni Pertzov
Software Mentions: 1
Published: over 5 years ago

10.1186/s13005-018-0174-4

Assessing the effect of multibracket appliance treatment on tooth color by using electronic measurement
Cited by: 2
Author(s): Anja Ratzmann, Ch. Schwahn, Anja Treichel, Andreas Faltermeier, Alexander Welk
Software Mentions: 1
Published: about 8 years ago

10.1186/s12866-020-01773-z

Profiling of koumiss microbiota and organic acids and their effects on koumiss taste
Cited by: 28
Author(s): Hongxiang Tang, Hongbing Ma, Qiangchuan Hou, Weicheng Li, Haiyan Xu, Wenjun Liu, Zhihong Sun, Halatu Haobisi, Bilige Menghe
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pbio.3000650

A pedagogical approach to science outreach
Cited by: 7
Author(s): Marni B. McClure, Kacey C. Hall, Erin F. Brooks, Catherine T. Allen, Kenneth S. Lyle
Software Mentions: 1
Published: over 6 years ago

10.1186/s12955-018-0986-8

Valuing health-related quality of life: systematic variation in health perception
Cited by: 7
Author(s): Manuel B. Huber, Martin Vogelmann, Reiner Leidl
Software Mentions: 1
Published: about 8 years ago

10.1002/hsr2.393

Standalone sauna vs exercise followed by sauna on cardiovascular function in non‐naïve sauna users: A comparison of acute effects
Cited by: 3
Author(s): Earric Lee, Joel Kostensalo, Peter Willeit, Setor K Kunutsor, Tanjaniina Laukkanen, Francesco Zaccardi, Hassan Khan, Jari A Laukkanen
Software Mentions: 1
Published: about 5 years ago

10.7554/eLife.58910

S-phase-independent silencing establishment in Saccharomyces cerevisiae
Cited by: 16
Author(s): Davis Goodnight, Jasper Rine
Software Mentions: 1
Published: over 6 years ago

10.1186/s12885-020-07523-8

microRNA-451a promoter methylation regulated by DNMT3B expedites bladder cancer development via the EPHA2/PI3K/AKT axis
Cited by: 10
Author(s): Beibei Liu, Wei Sun, Wuyue Gao, Liqiang Li, Zhenxue Cao, Xiaohuai Yang, Jianmin Liu, Yuanyuan Guo
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-021-86904-w

Tick defensin γ-core reduces Fusarium graminearum growth and abrogates mycotoxins production with high efficiency
Cited by: 7
Author(s): Valentin Leannec-Rialland, Alejandro Cabezas-Cruz, Vessela Atanasova‐Pénichon, Sylvain Chéreau, Nadia Ponts, Miray Tonk, Andreas Vilcinskas, Nathalie Ferrer, James J. Valdés, Florence Richard‐Forget
Software Mentions: 1
Published: over 5 years ago

10.1002/ece3.5451

The effect of multiple natural enemies on a shared herbivore prey
Cited by: 2
Author(s): Maartje J. Klapwijk
Software Mentions: 1
Published: over 7 years ago

10.5334/aogh.2574

Nationwide Hospital-Based Seroprevalence of Hepatitis A and Hepatitis E Virus in Bangladesh
Cited by: 7
Author(s): Ashraful Islam Khan, M Salimuzzaman, Md. Taufiqul Islam, Mokibul Hassan Afrad, Tahmina Shirin, Monjur Hossain Khan Jony, Md. Ashraful Alam, Mahmudur Rahman, Meerjady Sabrina Flora, Firdausi Qadri
Software Mentions: 1
Published: almost 7 years ago

10.7554/eLife.66815

Human airway cells prevent SARS-CoV-2 multibasic cleavage site cell culture adaptation
Cited by: 64
Author(s): Mart M. Lamers, Anna Z Mykytyn, Tim I Breugem, Yiquan Wang, Douglas C. Wu, Samra Riesebosch, Petra B. van den Doel, Debby Schipper, Theo M. Bestebroer, Nicholas C. Wu, Bart L. Haagmans
Software Mentions: 1
Published: over 5 years ago

10.1186/s12866-020-1707-0

Design of targeted primers based on 16S rRNA sequences in meta-transcriptomic datasets and identification of a novel taxonomic group in the Asgard archaea
Cited by: 13
Author(s): Ruyi Zhang, Bin Zou, Yonggang Yan, Che Ok Jeon, Meng Li, Mingwei Cai, Zhe‐Xue Quan
Software Mentions: 1
Published: over 6 years ago

10.1186/s12874-019-0862-1

Validating a transnational fracture treatment registry using a standardized method
Cited by: 2
Author(s): Jasper Frese, Annalice Gode, Gerhard Heinrichs, Armin Will, Arndt P. Schulz
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pbio.3000429

The intragenus and interspecies quorum-sensing autoinducers exert distinct control over Vibrio cholerae biofilm formation and dispersal
Cited by: 62
Author(s): Andrew A. Bridges, Bonnie L. Bassler
Software Mentions: 1
Published: almost 7 years ago

10.18632/aging.103554

Analysis of plasma metabolic profile, characteristics and enzymes in the progression from chronic hepatitis B to hepatocellular carcinoma
Cited by: 22
Author(s): Fei-Fei Cai, Yanan Song, Yi‐Yu Lu, Yongyu Zhang, Yiyang Hu, Shi‐Bing Su
Software Mentions: 1
Published: over 6 years ago

10.3390/plants10081739

Context-Dependent Effects of Trichoderma Seed Inoculation on Anthracnose Disease and Seed Yield of Bean (Phaseolus vulgaris): Ambient Conditions Override Cultivar-Specific Differences
Cited by: 2
Author(s): Karina Gutiérrez-Moreno, Michelina Ruocco, Maurilia M. Monti, Octavio Martı́nez de la Vega, Martin Heil
Software Mentions: 1
Published: about 5 years ago

10.1186/s12896-019-0558-y

Standardized mounting method of (zebrafish) embryos using a 3D-printed stamp for high-content, semi-automated confocal imaging
Cited by: 9
Author(s): David Simon Kleinhans, Virginie Lecaudey
Software Mentions: 1
Published: about 7 years ago

10.7554/eLife.60095

Peripheral natural killer cells in chronic hepatitis B patients display multiple molecular features of T cell exhaustion
Cited by: 15
Author(s): Marie Marotel, Marine Villard, Annabelle Drouillard, Issam Tout, Laurie Besson, Omran Allatif, Marine Pujol, Yamila Rocca, Michelle Ainouze, Guillaume Roblot, Sébastien Viel, Melissa Gomez, V. Loustaud, Sophie Alain, David Durantel, Thierry Walzer, Uzma Hasan, Antoine Marçais
Software Mentions: 1
Published: over 5 years ago

10.1038/s41437-020-0322-z

Recent introgression between Taiga Bean Goose and Tundra Bean Goose results in a largely homogeneous landscape of genetic differentiation
Cited by: 11
Author(s): Jente Ottenburghs, Johanna Honka, Gerard Müskens, Hans Ellegren
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-021-87909-1

Assessment of phylo-functional coherence along the bacterial phylogeny and taxonomy
Cited by: 5
Author(s): Marcos Parras-Moltó, Daniel Aguirre de Cárcer
Software Mentions: 1
Published: over 5 years ago

10.3390/plants10020189

Relative Telomere Length and Telomerase Reverse Transcriptase (TERT) Expression Are Associated with Age in Almond (Prunus dulcis [Mill.] D.A.Webb)
Cited by: 4
Author(s): Katherine M. D’Amico-Willman, Elizabeth S. Anderson, Thomas M. Gradziel, Jonathan Fresnedo-Ramírez
Software Mentions: 1
Published: almost 6 years ago

10.1172/jci.insight.136533

Humoral immune responses mediate the development of a restrictive phenotype of chronic lung allograft dysfunction
Cited by: 13
Author(s): Keizo Misumi, David Wheeler, Yoshiro Aoki, M.P. Combs, Russell R. Braeuer, Ryuji Higashikubo, Wenjun Li, Daniel Kreisel, Ragini Vittal, Jeffrey L. Myers, Amir Lagstein, Neff Walker, Carol Farver, Vibha N. Lama
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-021-86193-3

Optimising assessment of dark adaptation data using time to event analysis
Cited by: 4
Author(s): Bethany E. Higgins, Giovanni Montesano, Alison Binns, David P. Crabb
Software Mentions: 1
Published: over 5 years ago

10.3390/plants9030373

Effects of Rhizome Integration on the Water Physiology of Phyllostachys edulis Clones Under Heterogeneous Water Stress
Cited by: 4
Author(s): Jing Xiong, Chunju Cai, Shaohui Fan, Guanglu Liu, Changming Wang, Benxue Chen
Software Mentions: 1
Published: over 6 years ago

10.1590/s0102-865020200050000008

Differences in lipidomics may be potential biomarkers for early diagnosis of pancreatic cancer
Cited by: 8
Author(s): Dehua Zhou, Di Mu, Ming Cheng, Yuting Dou, Xianwei Zhang, Zhensheng Feng, Guangyu Qiu, Hua Yu, Yang Chen, Hong Xu, Jian Sun, Ling Zhou
Software Mentions: 1
Published: almost 7 years ago

10.3390/plants10040816

Broomrape Species Parasitizing Odontarrhena lesbiaca (Brassicaceae) Individuals Act as Nickel Hyperaccumulators
Cited by: 7
Author(s): Panayiotis G. Dimitrakopoulos, Maria Aloupi, Georgios Tetradis, George C. Adamidis
Software Mentions: 1
Published: over 5 years ago

10.3390/plants10040680

Floristic and Vegetation Changes on a Small Mediterranean Island over the Last Century
Cited by: 6
Author(s): Saverio Sciandrello, Salvatore Cambria, Gianpietro Giusso del Galdo, Riccardo Guarino, Pietro Minissale, Salvatore Pasta, Gianmarco Tavilla, A Cristaudo
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-021-87113-1

Structural equation modeling to shed light on the controversial role of climate on the spread of SARS-CoV-2
Cited by: 10
Author(s): Alessia Spada, Francesco Tucci, Aldo Ummarino, Paolo Pio Ciavarella, Nicholas Calà, Vincenzo Troiano, Michèle Caputo, Raffaele Ianzano, Silvia Corbo, Marco de Biase, Nicola Fascia, Chiara Forte, Giorgio Gambacorta, Gabriele Maccione, Giuseppina Prencipe, Michele Tomaiuolo, Antonio Tucci
Software Mentions: 1
Published: over 5 years ago

10.3390/plants9060772

Cucumber Fruit Size and Shape Variations Explored from the Aspects of Morphology, Histology, and Endogenous Hormones
Cited by: 28
Author(s): Huan Liu, Yupeng Pan, Ce Liu, Yuanyuan Ding, Xiao Wang, Zhihui Cheng, Huanwen Meng
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-021-87717-7

Individual and collective foraging in autonomous search agents with human intervention
Cited by: 1
Author(s): Daniel Schloesser, Derek Hollenbeck, Christopher T. Kello
Software Mentions: 1
Published: over 5 years ago

10.1186/s12874-020-01128-2

Spie charts for quantifying treatment effectiveness and safety in multiple outcome network meta-analysis: a proof-of-concept study
Cited by: 6
Author(s): Caitlin Daly, Lawrence Mbuagbaw, Lehana Thabane, Sharon E. Straus, Jemila S Hamid
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12896-018-0447-9

The importance of genotype identity, genetic heterogeneity, and bioinformatic handling for properly assessing genomic variation in transgenic plants
Cited by: 9
Author(s): Jean Michel Michno, Robert M. Stupar
Software Mentions: 1
Published: over 8 years ago

10.1002/ece3.7750

The burden of size and growth for the juveniles of large mammalian herbivores: Structural and functional constraints in the feeding biology of juveniles relative to adults in red kangaroos, Osphranter rufus
Cited by: 6
Author(s): Terence J. Dawson, Melinda Norton, Suzette Rodoreda, Sarah K. Abbott, Steven R. McLeod
Software Mentions: 1
Published: over 5 years ago

10.1172/jci.insight.147474

The effect of low-dose IL-2 and Treg adoptive cell therapy in patients with type 1 diabetes
Cited by: 76
Author(s): Shen Dong, Kamir J Hiam-Galvez, Cody T. Mowery, Kevan C. Herold, Stephen E. Gitelman, Jonathan H. Esensten, Weihong Liu, Angela Lares, Ashley S. Leinbach, Michael Lee, Vinh Nguyen, Stanley Tamaki, Whitney Tamaki, Courtney M. Tamaki, Morvarid Mehdizadeh, Amy Putnam, Matthew H. Spitzer, Chun Jimmie Ye, Qizhi Tang, Jeffrey A. Bluestone
Software Mentions: 1
Published: about 5 years ago

10.3390/nu5093352

Association between Subcutaneous White Adipose Tissue and Serum 25-Hydroxyvitamin D in Overweight and Obese Adults
Cited by: 37
Author(s): Brian D. Piccolo, Gregory G. Dolnikowski, Elias Seyoum, Anthony P. Thomas, Erik Gertz, Elisabete Abib Pedroso de Souza, Leslie R. Woodhouse, John W. Newman, Nancy L. Keim, Sean H. Adams, Marta D. Van Loan
Software Mentions: 1
Published: about 13 years ago

10.3390/plants10071380

Disparate Dynamics of Gene Body and cis-Regulatory Element Evolution Illustrated for the Senescence-Associated Cysteine Protease Gene SAG12 of Plants
Cited by: 7
Author(s): Emil Vatov, Uwe Ludewig, Ulrike Zentgraf
Software Mentions: 1
Published: over 5 years ago

10.1002/acn3.50867

The NIH Toolbox for cognitive surveillance in Duchenne muscular dystrophy
Cited by: 11
Author(s): Mathula Thangarajh, Aaron J. Kaat, Genila Bibat, Jennifer Mansour, Katherine Summerton, Anthony Gioia, Carly Berger, Kristina K. Hardy, Kathryn R. Wagner
Software Mentions: 1
Published: about 7 years ago

10.1021/acs.jafc.0c06279

Xylooligosaccharides Increase Bifidobacteria and Lachnospiraceae in Mice on a High-Fat Diet, with a Concomitant Increase in Short-Chain Fatty Acids, Especially Butyric Acid
Cited by: 40
Author(s): Karin Berger, Stephen Burleigh, Maria Lindahl, Abhishek Bhattacharya, Prachiti Patil, Henrik Stålbrand, Eva Nordberg Karlsson, Frida Fåk Hållenius, Margareta Nyman, Patrick Adlercreutz
Software Mentions: 1
Published: over 5 years ago

10.1093/cid/cix185

Treatment Response in Enteric Fever in an Era of Increasing Antimicrobial Resistance: An Individual Patient Data Analysis of 2092 Participants Enrolled into 4 Randomized, Controlled Trials in Nepal
Cited by: 36
Author(s): Corinne N. Thompson, Abhilasha Karkey, Sabina Dongol, Amit Arjyal, Marcel Wolbers, Thomas C. Darton, Jeremy Farrar, Guy Thwaites, Christiane Dolecek, Buddha Basnyat, Stephen Baker
Software Mentions: 1
Published: over 9 years ago

10.3233/JAD-190132

Low Serum High-Density Lipoprotein Cholesterol Levels Associate with the C9orf72 Repeat Expansion in Frontotemporal Lobar Degeneration Patients
Cited by: 13
Author(s): Olli Jääskeläinen, Eino Solje, Anette Hall, Kasper Katisko, Ville Korhonen, Mika Tiainen, Antti J. Kangas, Seppo Helisalmi, Maria Pikkarainen, Anne M. Koivisto, Päivi Hartikainen, Mikko Hiltunen, Mika Ala‐Korpela, Hilkka Soininen, Pasi Soininen, Annakaisa Haapasalo, Anne M. Remes, Sanna‐Kaisa Herukka
Software Mentions: 1
Published: almost 7 years ago

10.1016/j.jacc.2018.09.073

His Resynchronization Versus Biventricular Pacing in Patients With Heart Failure and Left Bundle Branch Block
Cited by: 167
Author(s): Ahran Arnold, Matthew Shun-Shin, Daniel Keene, James P. Howard, S.M. Afzal Sohaib, Ian Wright, Graham D. Cole, Norman Qureshi, David Lefroy, Michael Koa‐Wing, Nick Linton, Phang Boon Lim, Nicholas S. Peters, D. Wyn Davies, Amal Muthumala, Mark Tanner, Kenneth A. Ellenbogen, Prapa Kanagaratnam, Dárrel P. Francis, Zachary I. Whinnett
Software Mentions: 1
Published: almost 8 years ago

10.1186/s12874-016-0241-0

www.common-metrics.org: a web application to estimate scores from different patient-reported outcome measures on a common scale
Cited by: 17
Author(s): Felix Fischer, Matthias Rose
Software Mentions: 1
Published: about 10 years ago

10.1038/s41598-021-88294-5

Feasibility of CT-derived myocardial strain measurement in patients with advanced cardiac valve disease
Cited by: 11
Author(s): Marius Vach, Johanna Vogelhuber, Marcel Weber, Alois M. Sprinkart, Claus Christian Pieper, Wolfgang Block, Daniel Kuetting, Ulrike Attenberger, Julian A. Luetkens
Software Mentions: 1
Published: over 5 years ago

10.3390/plants8090338

SWEET Gene Family in Medicago truncatula: Genome-Wide Identification, Expression and Substrate Specificity Analysis
Cited by: 22
Author(s): Bin Hu, Hao Wu, Weifeng Huang, Jianbo Song, Yong Zhou, Yongjun Lin
Software Mentions: 1
Published: about 7 years ago

10.3390/nu12102908

Anti-Inflammatory Potential of Cow, Donkey and Goat Milk Extracellular Vesicles as Revealed by Metabolomic Profile
Cited by: 15
Author(s): Samanta Mecocci, Federica Gevi, Daniele Pietrucci, Luca Cavinato, Francesco R Luly, Luisa Pascucci, Stefano Petrini, Fiorentina Ascenzioni, Lello Zolla, Giovanni Chillemi, Katia Cappelli
Software Mentions: 1
Published: about 6 years ago

Projects: cran: ggplot2

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Science Score: 100/100

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Papers Mentioning ggplot2 11,441