cran: ggplot2 | Projects | Ecosyste.ms: Papers

10.3390/cancers12010070

Integrated Analysis of Structural Variation and RNA Expression of FGFR2 and Its Splicing Modulator ESRP1 Highlight the ESRP1amp-FGFR2norm-FGFR2-IIIchigh Axis in Diffuse Gastric Cancer
Cited by: 12
Author(s): Sara Pinto Teles, Patrícia Oliveira, Marta Ferreira, Joana Carvalho, Pedro Ferreira, Carla Oliveíra
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-019-55574-0

Spatially Adjusted Time-varying Reproductive Numbers: Understanding the Geographical Expansion of Urban Dengue Outbreaks
Cited by: 19
Author(s): Ta-Chou Ng, Tzai‐Hung Wen
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-019-55825-0

Supplementation of live yeast based feed additive in early life promotes rumen microbial colonization and fibrolytic potential in lambs
Cited by: 25
Author(s): Frédérique Chaucheyras‐Durand, Aurélie Ameilbonne, Pauline Auffret, Mickaël Bernard, Marie-Madeleine Mialon, Lysiane Dunière, Evelyne Forano
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-019-55644-3

High Levels of Oxidative Stress and Skin Microbiome are Critical for Initiation and Development of Chronic Wounds in Diabetic Mice
Cited by: 41
Author(s): Jane H. Kim, Benjamin Yang, Amanda Tedesco, Elyson Gavin D. Lebig, Paul Ruegger, Karen Xu, James Borneman, Manuela Martins‐Green
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-019-55464-5

Insight into the biology of Mycobacterium mucogenicum and Mycobacterium neoaurum clade members
Cited by: 11
Author(s): Phani Rama Krishna Behra, B. M. Fredrik Pettersson, Malavika Ramesh, Santanu Dasgupta, Leif A. Kirsebom
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-019-55741-3

Sensitivity and specificity of metatranscriptomics as an arbovirus surveillance tool
Cited by: 23
Author(s): Jana Batovska, Peter T Mee, Stacey E. Lynch, Tim Sawbridge, Brendan Rodoni
Software Mentions: 1
Published: over 6 years ago

10.3390/cancers12051080

YM155-Adapted Cancer Cell Lines Reveal Drug-Induced Heterogeneity and Enable the Identification of Biomarker Candidates for the Acquired Resistance Setting
Cited by: 4
Author(s): Martin Michaelis, Mark N. Wass, Ian Reddin, Yvonne Voges, Florian Rothweiler, Stephanie Hehlgans, Jaroslav Činátl, Marco Mernberger, Andrea Nist, Thorsten Stiewe, Franz Rödel, Jindřich Činátl
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-020-74734-1

Historical trend on seed amino acid concentration does not follow protein changes in soybeans
Cited by: 17
Author(s): André Fróes de Borja Reis, Santiago Tamagno, Luiz H. Moro Rosso, Osler Ortez, Seth L. Naeve, Ignacio A. Ciampitti
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0155046

A European Mitochondrial Haplotype Identified in Ancient Phoenician Remains from Carthage, North Africa
Cited by: 23
Author(s): Elizabeth Matisoo-Smith, Anna L. Gosling, James Boocock, Olga Kardailsky, Yara Kurumilian, Sihem Roudesli‐Chebbi, Leila Badre, Jean-Paul Morel, Leïla Ladjimi Sebaï, Pierre Zalloua
Software Mentions: 1
Published: about 10 years ago

10.7717/peerj.8266

Organ health and development in larval kingfish are unaffected by ocean acidification and warming
Cited by: 6
Author(s): Andrea Frommel, Colin J. Brauner, Bridie J. M. Allan, Simon Nicol, Darren M. Parsons, Steve Pether, Alvin N. Setiawan, Neville Smith, Philip L. Munday
Software Mentions: 1
Published: over 6 years ago

10.1186/s12864-017-3782-7

Comparative genomics of Eucalyptus and Corymbia reveals low rates of genome structural rearrangement
Cited by: 24
Author(s): Jakob B. Butler, René E. Vaillancourt, Brad M. Potts, D. J. Lee, Graham J. King, Abdul Baten, Mervyn Shepherd, Jules S. Freeman
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-020-75189-0

Spatiotemporal mapping of malaria prevalence in Madagascar using routine surveillance and health survey data
Cited by: 16
Author(s): Rohan Arambepola, Suzanne Keddie, Emma Collins, Katherine A. Twohig, Punam Amratia, Amelia Bertozzi‐Villa, Elisabeth G. Chestnutt, Jonathan Harris, Justin Millar, Jennifer Rozier, Susan F. Rumisha, Tasmin L. Symons, Camilo Vargas-Ruiz, Mauricette Andriamananjara, Saraha Rabeherisoa, Arsène Ratsimbasoa, Rosalind E. Howes, Daniel J. Weiss, Peter W. Gething, Ewan Cameron
Software Mentions: 1
Published: almost 6 years ago

10.1002/fsn3.2082

Genome‐wide association study in diverse Iranian wheat germplasms detected several putative genomic regions associated with stem rust resistance
Cited by: 5
Author(s): Ali Saremirad, M. R. Bihamta, Ali Malihipour, Khodadad Mostafavi, Hadi Alipour
Software Mentions: 1
Published: over 5 years ago

10.1186/1471-2164-15-870

Diversification of the C-TERMINALLY ENCODED PEPTIDE (CEP) gene family in angiosperms, and evolution of plant-family specific CEP genes
Cited by: 59
Author(s): Huw A. Ogilvie, Nijat Imin, Michael A. Djordjevic
Software Mentions: 1
Published: over 12 years ago

10.1038/s41598-020-74886-0

Male sexual orientation, gender nonconformity, and neural activity during mental rotations: an fMRI study
Cited by: 14
Author(s): Monika Folkierska-Żukowska, Qazi Rahman, Artur Marchewka, Marek Wypych, Dawid Droździel, Andrzej Sokołowski, Wojciech Ł. Dragan
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0159518

High Hospitalization Rates in Survivors of Childhood Cancer: A Longitudinal Follow-Up Study Using Medical Record Linkage
Cited by: 23
Author(s): Elske Sieswerda, Anna Font-Gonzalez, Johannes B. Reitsma, Marcel G. W. Dijkgraaf, Richard C. Heinen, Monique W. M. Jaspers, Helena J. van der Pal, Flora E. van Leeuwen, Huib N. Caron, Ronald B. Geskus, Leontien C. M. Kremer
Software Mentions: 1
Published: about 10 years ago

10.1038/s41598-020-75909-6

Vocal panting: a novel thermoregulatory mechanism for enhancing heat tolerance in a desert-adapted bird
Cited by: 15
Author(s): Anaïs Pessato, Andrew E. McKechnie, Katherine L. Buchanan, Mylène M. Mariette
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-020-75928-3

Mapping O2 concentration in ex-vivo tissue samples on a fast PLIM macro-imager
Cited by: 5
Author(s): Rajannya Sen, Alexander V. Zhdanov, Thomaz F.S. Bastiaanssen, L Hirvonen, Peter Švihra, Patrick Fitzgerald, John F. Cryan, Stefan Andersson‐Engels, A. Nomerotski, Dmitri B. Papkovsky
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-020-76105-2

A prospective observational prevalence study of elevated HbA1c among elective surgical patients
Cited by: 3
Author(s): L.W. Teo, Wan Yen Lim, Yuhe Ke, Isaac Sia, Chuan Hao Gui, Hairil Rizal Abdullah
Software Mentions: 1
Published: almost 6 years ago

10.12688/wellcomeopenres.16113.2

Pooled testing conserves SARS-CoV-2 laboratory resources and improves test turn-around time: experience on the Kenyan Coast
Cited by: 11
Author(s): Charles N. Agoti, Martin Mutunga, Arnold W. Lambisia, Domtila Kimani, Robinson Cheruiyot, Patience K. Kiyuka, Clement Lewa, Elijah Gicheru, Metrine Tendwa, Khadija Said Mohammed, Victor Osoti, Johnstone Makale, Brian Tawa, Calleb Odundo, Wesley Cheruiyot, Wilfred Nyamu, Wilson Gumbi, Jedidah Mwacharo, Lydia Nyamako, Edward Otieno, David Amadi, Janet Thoya, Angela Karani, Daisy Mugo, Jennifer Musyoki, Horace Gumba, Salim Mwarumba, Bonface M. Gichuki, Susan Njuguna, Debra Riako, Shadrack Mutua, John N. Gitonga, Yiakon Sein, Brian Bartilol, Shaban Mwangi, Donwilliams O. Omuoyo, John M. Morobe, Zaydah R. de Laurent, Philip Bejon, Lynette Isabella Ochola‐Oyier, Benjamin Tsofa
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-020-76170-7

Potential of Moroccan entomopathogenic nematodes for the control of the Mediterranean fruit fly Ceratitis capitata Wiedemann (Diptera: Tephritidae)
Cited by: 22
Author(s): Fouad Mokrını, Salah-Eddine Laasli, Youssef Benseddik, Abdelmalek Boutaleb Joutei, Abdelali Blenzar, Hicham Lakhal, Mohamed Sbaghi, Mustafa İmren, Göksel Özer, Timothy C. Paulitz, Rachid Lahlali, Abdelfattah A. Dababat
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-020-76114-1

Probing natural variation of IRE1 expression and endoplasmic reticulum stress responses in Arabidopsis accessions
Cited by: 7
Author(s): Taiaba Afrin, Minye Seok, Brenna C. Terry, Karolina M. Pajerowska-Mukhtar
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12864-020-07145-1

Genome of the four-finger threadfin Eleutheronema tetradactylum (Perciforms: Polynemidae)
Cited by: 3
Author(s): Zhe Qu, Wenyan Nong, Yifei Yu, Tobias Baril, Ho Yin Yip, Alexander Hayward, Jerome H. L. Hui
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12864-015-1536-y

A novel member of the let-7 microRNA family is associated with developmental transitions in filarial nematode parasites
Cited by: 26
Author(s): Alan D. Winter, Victoria Gillan, Kirsty Maitland, Richard D. Emes, Brett Roberts, Gillian McCormack, William Weir, Anna V. Protasio, Nancy Holroyd, Matthew Berriman, Collette Britton, Eileen Devaney
Software Mentions: 1
Published: over 11 years ago

10.1038/s41598-020-76692-0

Recycling biofloc waste as novel protein source for crayfish with special reference to crayfish nutritional standards and growth trajectory
Cited by: 8
Author(s): Roman Lunda, Koushik Roy, Petr Dvořák, Antonín Kouba, Jan Mráz
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pbio.1002452

Functional Sites Induce Long-Range Evolutionary Constraints in Enzymes
Cited by: 92
Author(s): Benjamin R. Jack, Austin G. Meyer, Julián Echave, Claus O. Wilke
Software Mentions: 1
Published: over 10 years ago

10.7717/peerj.6809

Identification of a putative competitive endogenous RNA network for lung adenocarcinoma using TCGA datasets
Cited by: 14
Author(s): Yuanyong Wang, Tong Lu, Yang Wo, Xiao Sun, Shicheng Li, Shuncheng Miao, Yanting Dong, Xiaoliang Leng, Wenjie Jiao
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0227199

Transgenic overexpression of endogenous FLOWERING LOCUS T-like gene MeFT1 produces early flowering in cassava
Cited by: 24
Author(s): John Odipio, Getu Beyene, Raj Deepika Chauhan, Titus Alicai, Rebecca Bart, Dmitri A. Nusinow
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-020-77196-7

Diversity, dynamics, direction, and magnitude of high-altitude migrating insects in the Sahel
Cited by: 17
Author(s): Jenna Florio, Laura Veru, Adama Dao, Alpha Seydou Yaro, Moussa Diallo, ZZ Sanogo, Djibril Samaké, Diana L. Huestis, Ousman Yossi, Elijah J. Talamas, María Lourdes Chamorro, J. Howard Frank, Maurizio Biondi, Carsten Morkel, Charles R. Bartlett, Yvonne‐Marie Linton, Ehud Strobach, Jason W. Chapman, D. R. Reynolds, Roy Faiman, Benjamin J Krajacich, Corey Shepard. Smith, Tovi Lehmann
Software Mentions: 1
Published: over 5 years ago

10.7717/peerj.7451

Profiling the lncRNA-miRNA-mRNA ceRNA network to reveal potential crosstalk between inflammatory bowel disease and colorectal cancer
Cited by: 28
Author(s): Fangfang Sun, Weiwei Liang, Kejun Tang, Mengying Hong, Jing Qian
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0174534

The microRNA repertoire of Tibetan naked carp Gymnocypris przewalskii: A case study in Schizothoracinae fish on the Tibetan Plateau
Cited by: 15
Author(s): Chao Tong, Fei Tian, Cunfang Zhang, Kai Zhao
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pbio.2005189

Tissue-specific degradation of essential centrosome components reveals distinct microtubule populations at microtubule organizing centers
Cited by: 58
Author(s): Maria D. Sallee, Jennifer C. Zonka, Taylor D. Skokan, Brian Raftrey, Jessica L. Feldman
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0146104

Statistical Evaluation of HTS Assays for Enzymatic Hydrolysis of β-Keto Esters
Cited by: 11
Author(s): O. Buß, Sven Jäger, Sarah‐Marie Dold, Sarah C. Zimmermann, Kay Hamacher, Katja Schmitz, Jens Rudat
Software Mentions: 1
Published: over 10 years ago

10.1038/s41598-020-78052-4

Mismatch of thermal optima between performance measures, life stages and species of spiny lobster
Cited by: 6
Author(s): Samantha Twiname, Quinn P. Fitzgibbon, Alistair J. Hobday, Chris Carter, Michael Oellermann, Gretta T. Pecl
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0139663

Genomic Landscape of Primary Mediastinal B-Cell Lymphoma Cell Lines
Cited by: 17
Author(s): Haiping Dai, Stefan Ehrentraut, Stefan Nagel, Sonja Eberth, Claudia Pommerenke, Wilhelm G. Dirks, Robert Geffers, Srilaxmi Kalavalapalli, Maren Kaufmann, Corrina Meyer, Silke Faehnrich, Suning Chen, Hans G. Drexler, Roderick A.F. MacLeod
Software Mentions: 1
Published: over 10 years ago

10.7554/eLife.65811

Differentiation of mouse fetal lung alveolar progenitors in serum-free organotypic cultures
Cited by: 3
Author(s): Konstantinos Gkatzis, Paolo Panza, Sofia Peruzzo, Didier Y.R. Stainier
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.pone.0256342

Plant strategies for maximizing growth during water stress and subsequent recovery in Solanum melongena L. (eggplant)
Cited by: 13
Author(s): E. F. Delfin, Sarah Tepler Drobnitch, Louise H. Comas
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-020-78317-y

Amplitude of low frequency fluctuations (ALFF) of spontaneous and induced rumination in major depression: An fNIRS study
Cited by: 13
Author(s): David Rosenbaum, Isabell Int-Veen, Agnes Kroczek, Paula Hilsendegen, Kerstin Velten-Schurian, Isabel Bihlmaier, Andreas J. Fallgatter, Ann‐Christine Ehlis
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-020-78527-4

Acute and subacute psychoactive effects of Kambô, the secretion of the Amazonian Giant Maki Frog (Phyllomedusa bicolor): retrospective reports
Cited by: 7
Author(s): Timo Torsten Schmidt, Simon Reiche, Caroline L. C. Hage, Felix Bermpohl, Tomislav Majić
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-020-78846-6

The acute effect in performing common range of motion tests in healthy young adults: a prospective study
Cited by: 5
Author(s): Fabian Holzgreve, Christian Maurer-Grubinger, J. Isaak, P. Kokott, Manja Mörl-Kreitschmann, L. Polte, A. Solimann, L. Wessler, Natalie Filmann, Anke van Mark, Laura Maltry, David A. Groneberg, Daniela Ohlendorf
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-020-78962-3

First assessment of POPs and cytochrome P450 expression in Cuvier’s beaked whales (Ziphius cavirostris) skin biopsies from the Mediterranean Sea
Cited by: 10
Author(s): Matteo Baini, Cristina Panti, María Cristina Fossi, Paola Tepsich, Begoña Jiménez, Frazer Coomber, Alice Bartalini, Juan Moreira, Aurélie Moulins, Massimiliano Rosso
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pbio.1002555

Phosphorylation of Def Regulates Nucleolar p53 Turnover and Cell Cycle Progression through Def Recruitment of Calpain3
Cited by: 29
Author(s): Yihong Guan, Delai Huang, Feng Chen, Ce Gao, Ting Tao, Hui Shi, Shanshan Zhao, Zuyuan Liao, Li Jan Lo, Yingchun Wang, Jun Chen, Jinrong Peng
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pone.0182730

Quantifying immediate and delayed effects of anthelmintic exposure on ecosystem functioning supported by a common dung beetle species
Cited by: 17
Author(s): Paul Manning, Sarah A. Beynon, Owen T. Lewis
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-020-79269-z

Lipid yield from the diatom Porosira glacialis is determined by solvent choice and number of extractions, independent of cell disruption
Cited by: 6
Author(s): Jon Brage Svenning, Lars Dalheim, Terje Vasskog, Lucie Matricon, Birthe Vang, Ragnar L. Olsen
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0170658

Using spatio-temporal surveillance data to test the infectious environment of children before type 1 diabetes diagnosis
Cited by: 6
Author(s): Pierre Bougnères, Sophie Le Fur, Sophie Valtat, Yoichiro Kamatani, Mark Lathrop, Alain‐Jacques Valleron
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-020-80644-z

LAMP-based foldable microdevice platform for the rapid detection of Magnaporthe oryzae and Sarocladium oryzae in rice seed
Cited by: 16
Author(s): M. K. Prasannakumar, P. Buela Parivallal, D. Pramesh, H. B. Mahesh, Esack Edwin Raj
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-020-79706-z

Neon-green fluorescence in the desert gecko Pachydactylus rangei caused by iridophores
Cited by: 15
Author(s): David Prötzel, Martin Heß, Martina Schwager, Frank Glaw, Mark D. Scherz
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-020-78775-4

Shared and divergent phase separation and aggregation properties of brain-expressed ubiquilins
Cited by: 16
Author(s): Julia E. Gerson, Hunter Linton, Jiazheng Xing, Alexandra B. Sutter, Fayth S. Kakos, Jaimie Ryou, Nyjerus Liggans, Lisa M. Sharkey, Nathaniel Safren, Henry L. Paulson, Magdalena I. Ivanova
Software Mentions: 1
Published: over 5 years ago

10.7717/peerj.6195

Hardly habitual: chimpanzees and gorillas show flexibility in their motor responses when presented with a causally-clear task
Cited by: 7
Author(s): Sarah L. Jacobson, Lydia M. Hopper
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0222610

Cardiac resynchronization therapy-heart failure (CRT-HF) clinic: A novel model of care
Cited by: 18
Author(s): Eiran Z. Gorodeski, Christina Magnelli-Reyes, Laurie Ann Moennich, Adam Grimaldi, John Rickard
Software Mentions: 1
Published: almost 7 years ago

10.3390/v11040332

Experimental Infection of Sand Flies by Massilia Virus and Viral Transmission by Co-Feeding on Sugar Meal
Cited by: 9
Author(s): Magdalena Jancarova, Laurence Bichaud, Jana Hlaváčová, Stéphane Priet, Nazlı Ayhan, Tatiana Spitzová, Petr Volf, Rémi N. Charrel
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0176541

Environmental DNA method for estimating salamander distribution in headwater streams, and a comparison of water sampling methods
Cited by: 46
Author(s): Izumi Katano, Ken Harada, Rio Souma, Toshifumi Minamoto
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-020-80323-z

Biomechanical insights into the dentition of megatooth sharks (Lamniformes: Otodontidae)
Cited by: 8
Author(s): Antonio Ballell, Humberto G. Ferrón
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-020-79914-7

Propofol infusions using a human target controlled infusion (TCI) pump in chimpanzees (Pan troglodytes)
Cited by: 3
Author(s): Takako Miyabe‐Nishiwaki, Akihisa Kaneko, Atsushi Yamanaka, Norihiko Maeda, Juri Suzuki, Masaki Tomonaga, Tetsuro Matsuzawa, Kanako Muta, Ryohei Nishimura, Isao Yajima, Douglas J. Eleveld, Anthony Absalom, Kenichi Masui
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0089428

Increased Prolactin Levels Are Associated with Impaired Processing Speed in Subjects with Early Psychosis
Cited by: 32
Author(s): Itziar Montalvo, Alfonso Gutiérrez-Zotes, Marta Creus, Rosa Monseny, Laura Ortega, J. Franch, Stephen M. Lawrie, Rebecca M. Reynolds, Elisabet Vilella, Javier Labad
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pbio.3000632

A widespread family of heat-resistant obscure (Hero) proteins protect against protein instability and aggregation
Cited by: 44
Author(s): Kaoru Tsuboyama, Tatsuya Osaki, Eriko Matsuura-Suzuki, Hiroko Kozuka‐Hata, Yuki Okada, Masaaki Oyama, Yoshiho Ikeuchi, Shigeo Iwasaki, Yukihide Tomari
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-021-81254-z

Estimating epidemiological parameters using diagnostic testing data from low pathogenicity avian influenza infected turkey houses
Cited by: 2
Author(s): Peter J. Bonney, Sasidhar Malladi, Amos Ssematimba, Erica Spackman, Mia Kim Torchetti, Marie Culhane, Carol J. Cardona
Software Mentions: 1
Published: over 5 years ago

10.1186/s13048-020-0613-2

Integrated bioinformatics analysis for the screening of hub genes and therapeutic drugs in ovarian cancer
Cited by: 47
Author(s): Dan Yang, Yulong He, Bo Wu, Yan Deng, Nan Wang, Menglin Li, Yang Liu
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-020-80149-9

Comparative analysis of nuclear, chloroplast, and mitochondrial genomes of watermelon and melon provides evidence of gene transfer
Cited by: 18
Author(s): Haonan Cui, Zhuo Ding, Qianglong Zhu, Yue Wu, Boyan Qiu, Peng Gao
Software Mentions: 1
Published: over 5 years ago

10.1186/s12864-018-4850-3

Transposable elements generate regulatory novelty in a tissue-specific fashion
Cited by: 76
Author(s): Marco Trizzino, Aurélie Kapusta, Christopher D. Brown
Software Mentions: 1
Published: about 8 years ago

10.1038/s41598-020-80924-8

Dietary patterns, food groups and nutrients in Crohn’s disease: associations with gut and systemic inflammation
Cited by: 10
Author(s): Syed Ali Raza Naqvi, Lorian Taylor, Remo Panaccione, Subrata Ghosh, Herman W. Barkema, Naomi Hotte, Nusrat Shommu, Sandeep Kaur, Raylene A. Reimer, Karen Madsen, Maitreyi Raman
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-020-79362-3

Molecular analyses identifies new domains and structural differences among Streptococcus pneumoniae immune evasion proteins PspC and Hic
Cited by: 3
Author(s): Shanshan Du, Cláudia Vilhena, Serina King, Alfredo Sahagún-Ruíz, Sven Hammerschmidt, Christine Skerka, Peter F. Zipfel
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-021-81143-5

Explaining the trends and variability in the United States tornado records using climate teleconnections and shifts in observational practices
Cited by: 14
Author(s): Niloufar Nouri, Naresh Devineni, Valerie Were, R. Khanbilvardi
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0206512

Immune diversity sheds light on missing variation in worldwide genetic diversity panels
Cited by: 53
Author(s): Laurent Abi-Rached, Philippe Gouret, Jung-Hua Yeh, Julie Di Cristofaro, Pierre Pontarotti, Christophe Picard, Julien Paganini
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41598-020-80798-w

Sensitivity to food and cocaine cues are independent traits in a large sample of heterogeneous stock rats
Cited by: 10
Author(s): Christopher P. King, Jordan A. Tripi, Alesa Hughson, Aidan P. Horvath, Alexander Lamparelli, Katie Holl, Apurva S. Chitre, Oksana Polesskaya, Keita Ishiwari, Leah C. Solberg Woods, Abraham A. Palmer, Terry E. Robinson, Shelly B. Flagel, Paul J. Meyer
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0253440

Evaluating coverage bias in next-generation sequencing of Escherichia coli
Cited by: 6
Author(s): Samantha Gunasekera, Sam Abraham, Marc Stegger, Stanley Pang, Penghao Wang, Shafi Sahibzada, Mark O’Dea
Software Mentions: 1
Published: about 5 years ago

10.1186/s12864-019-6189-9

Capture of complete ciliate chromosomes in single sequencing reads reveals widespread chromosome isoforms
Cited by: 8
Author(s): Kelsi Lindblad, Jananan S. Pathmanathan, Sandrine Moreira, John R. Bracht, Robert Sebra, Elizabeth Hutton, Laura F. Landweber
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-021-81112-y

Impact of a toothpaste with microcrystalline hydroxyapatite on the occurrence of early childhood caries: a 1-year randomized clinical trial
Cited by: 32
Author(s): Elżbieta Paszyńska, Małgorzata Pawińska, Maria Gawriołek, Inga Kamińska, Justyna Otulakowska-Skrzynska, Grażyna Marczuk-Kolada, Szymon Rzatowski, Katarzyna Sokołowska, Aneta Olszewska, Ulrich Schlagenhauf, Theodor W. May, Bennett T. Amaechi, Elżbieta Łuczaj-Cepowicz
Software Mentions: 1
Published: over 5 years ago

10.7554/eLife.42951

Regulator of G protein signaling 12 enhances osteoclastogenesis by suppressing Nrf2-dependent antioxidant proteins to promote the generation of reactive oxygen species
Cited by: 30
Author(s): Andrew Ng, Ziqing Li, Megan M. Jones, Shuting Yang, Chunyi Li, Chuanyun Fu, Chengjian Tu, Merry Jo Oursler, Jun Qu, Shuying Yang
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pcbi.1006360

ggsashimi: Sashimi plot revised for browser- and annotation-independent splicing visualization
Cited by: 137
Author(s): Diego Garrido-Martín, Emilio Palumbo, Roderic Guigó, Alessandra Breschi
Software Mentions: 1
Published: about 8 years ago

10.1038/s41598-021-96159-0

Molecular mechanisms of the anti-cancer drug, LY2874455, in overcoming the FGFR4 mutation-based resistance
Cited by: 3
Author(s): Fariba Dehghanian, Shahryar Alavi
Software Mentions: 1
Published: about 5 years ago

10.1186/1471-2164-13-703

Targeted enrichment of the black cottonwood (Populus trichocarpa) gene space using sequence capture
Cited by: 66
Author(s): Long Zhou, Jason A. Holliday
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0137640

Deciphering Seed Sequence Based Off-Target Effects in a Large-Scale RNAi Reporter Screen for E-Cadherin Expression
Cited by: 8
Author(s): Robert A. Adams, Barbara Nicke, Hans‐Dieter Pohlenz, Florian Sohler
Software Mentions: 1
Published: almost 11 years ago

10.7717/peerj.12052

A new threat to local marine biodiversity: filamentous mats proliferating at mesophotic depths off Rapa Nui
Cited by: 4
Author(s): Javier Sellanes, Matthias Gorny, German Zapata‐Hernández, Gonzalo Álvarez, Práxedes Muñoz, Fadia Tala
Software Mentions: 1
Published: almost 5 years ago

10.12688/wellcomeopenres.10036.2

Pathogenic mycobacteria achieve cellular persistence by inhibiting the Niemann-Pick Type C disease cellular pathway
Cited by: 21
Author(s): Paul Fineran, Emyr Lloyd-Evans, Nathan A. Lack, Nick Platt, Lianne C. Davis, Anthony J. Morgan, Doris Höglinger, Raju V. V. Tatituri, Simon Clark, Ian M. Williams, Patricia W. Tynan, Nada Al Eisa, Evgeniya V. Nazarova, Ann Williams, Antony Galione, Daniel S. Ory, Gurdyal S. Besra, David G. Russell, Michael B. Brenner, Edith Sim, Frances M. Platt
Software Mentions: 1
Published: about 9 years ago

10.7554/eLife.56893

Rho1 activation recapitulates early gastrulation events in the ventral, but not dorsal, epithelium of Drosophila embryos
Cited by: 18
Author(s): Ashley Rich, Richard G. Fehon, Michael Glotzer
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0241373

Variations in the Circle of Willis in a large population sample using 3D TOF angiography: The Tromsø Study
Cited by: 28
Author(s): Lars B. Hindenes, Asta Håberg, Liv Hege Johnsen, Ellisiv B. Mathiesen, David Robben, Torgil Vangberg
Software Mentions: 1
Published: almost 6 years ago

10.3390/v13010114

Studies on the Efficacy, Potential Cardiotoxicity and Monkey Pharmacokinetics of GLP-26 as a Potent Hepatitis B Virus Capsid Assembly Modulator
Cited by: 13
Author(s): Selwyn J. Hurwitz, Noreen McBrearty, Alla Arzumanyan, Eugene Bichenkov, Sijia Tao, Leda Bassit, Zhe Chen, James J. Kohler, Franck Amblard, Mark A. Feitelson, Raymond F. Schinazi
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0155143

Impaired Bile Acid Homeostasis in Children with Severe Acute Malnutrition
Cited by: 18
Author(s): Ling Zhang, Wieger Voskuijl, Marialena Mouzaki, Albert K. Groen, J. J. Alexander, Céline Bourdon, Alice Wang, Christian J. Versloot, Valeria Di Giovanni, Ronald J. A. Wanders, Robert Bandsma
Software Mentions: 1
Published: over 10 years ago

10.1038/s41598-021-98033-5

Different theta connectivity patterns underlie pleasantness evoked by familiar and unfamiliar music
Cited by: 3
Author(s): Alberto Ara, Josep Marco-Pallarés
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.pone.0149813

Effects of Invasive-Plant Management on Nitrogen-Removal Services in Freshwater Tidal Marshes
Cited by: 21
Author(s): Mary Alldred, Stephen B. Baines, Stuart Findlay
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0181371

Effects of health risk assessment and counselling on physical activity in older people: A pragmatic randomised trial
Cited by: 12
Author(s): Anna Marie Herghelegiu, André Moser, Gabriel Ioan Prada, Stephan Born, Matthias Wilhelm, Andreas E. Stuck
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0257800

Enhanced copper-resistance gene repertoire in Alteromonas macleodii strains isolated from copper-treated marine coatings
Cited by: 4
Author(s): Kathleen D. Cusick, Ane Iturbide, Pratima Gautam, Amelia Price, Shawn W. Polson, Madolyn L. MacDonald, Ivan Erill
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-021-98356-3

Using approach latency and anticipatory behaviour to assess whether voluntary playpen access is rewarding to laboratory mice
Cited by: 6
Author(s): Anna S. Ratuski, I. Joanna Makowska, Kaitlyn R Dvorack, Daniel M. Weary
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.pbio.2007044

CRISPR screening using an expanded toolkit of autophagy reporters identifies TMEM41B as a novel autophagy factor
Cited by: 103
Author(s): Christopher J. Shoemaker, T.Q. Huang, N. Weir, Nicole J. Polyakov, Sebastian W. Schultz, Vladimir Denic
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-021-98247-7

Quantitative assessment of sensitizing potency using a dose–response adaptation of GARDskin
Cited by: 5
Author(s): Robin Gradin, Andy Forreryd, Ulrika Mattson, Anders Jerre, Henrik Johansson
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-021-98099-1

Persistence and accumulation of environmental DNA from an endangered dragonfly
Cited by: 4
Author(s): Kristie Jo Schmidt, Daniel A. Soluk, Sarah E. Mays Maestas, Hugh B. Britten
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-021-98709-y

Viral S protein histochemistry reveals few potential SARS-CoV-2 entry sites in human ocular tissues
Cited by: 9
Author(s): Gottfried Martin, Julian Wolf, Thabo Lapp, Hansjürgen Agostini, Günther Schlunck, Claudia Auw-Hädrich, Clemens Lange
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.pone.0192117

The number of repeated observations needed to estimate the habitual physical activity of an individual to a given level of precision
Cited by: 25
Author(s): Patrick Bergman
Software Mentions: 1
Published: over 8 years ago

10.7554/eLife.61287

Characterization of the mechanism by which the RB/E2F pathway controls expression of the cancer genomic DNA deaminase APOBEC3B
Cited by: 22
Author(s): Pieter A. Roelofs, Chai Yeen Goh, Boon Haow Chua, Matthew C. Jarvis, Teneale A. Stewart, John D. McCann, Rebecca M. McDougle, Michael A. Carpenter, John W.M. Martens, Paul N. Span, Dennis Kappei, Reuben S. Harris
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-021-98834-8

Cortical thickness is differently associated with ALDH2 rs671 polymorphism according to level of amyloid deposition
Cited by: 0
Author(s): Yong Hyuk Cho, Heirim Lee, Na-Rae Kim, Jin Wook Choi, Hyun Woong Roh, Jae Ho Ha, Chang Hyung Hong, Sang Won Seo, Seong Hye Choi, Eun-Joo Kim, Byeong C. Kim, Seong Yoon Kim, J.Y. Cheong, Bumhee Park, Sang Joon Son
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.pone.0255421

Urban children’s connections to nature and environmental behaviors differ with age and gender
Cited by: 13
Author(s): Ryan J. Keith, Lisa M. Given, John M. Martin, Dieter F. Hochuli
Software Mentions: 1
Published: about 5 years ago

10.1186/s40168-020-00800-5

Entomopathogenic nematode-associated microbiota: from monoxenic paradigm to pathobiome
Cited by: 47
Author(s): Jean-Claude Ogier, Sylvie Pagès, Marie Frayssinet, Sophie Gaudriault
Software Mentions: 1
Published: over 6 years ago

10.1186/s40168-020-00852-7

Temporal variations in bacterial community diversity and composition throughout intensive care unit renovations
Cited by: 12
Author(s): Jessica Chopyk, Kevan Akrami, Tovia Bavly, Ji Hyun Shin, Leila K. Schwanemann, Melissa Ly, Richa Kalia, Ying Xu, Scott T. Kelley, Atul Malhotra, Francesca J. Torriani, Daniel A. Sweeney, David T. Pride
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-021-99129-8

Evaluation of at-home methods for N95 filtering facepiece respirator decontamination
Cited by: 0
Author(s): Tiffany X. Chen, Ana Pinharanda, Natalie A. Steinemann, Keiko Yasuma, E. Lee, Jaeseung Hahn, Lydia Wu, Stavros Fanourakis, Darcy S. Peterka, Elizabeth M. C. Hillman
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-021-99162-7

Population pharmacokinetic model of cefazolin in total hip arthroplasty
Cited by: 4
Author(s): Julien Lanoiselée, Robin Chaux, Sophie Hodin, S. Bourayou, Audrick Gibert, Rémi Philippot, Serge Molliex, P. Zufferey, Xavier Delavenne, Édouard Ollier
Software Mentions: 1
Published: almost 5 years ago

10.1126/science.aau6348

Thyroid hormone signaling specifies cone subtypes in human retinal organoids
Cited by: 169
Author(s): Kiara C. Eldred, Sarah E. Hadyniak, Katarzyna A. Hussey, Boris Brenerman, Ping Wu Zhang, Xitiz Chamling, Valentin M. Sluch, Derek S. Welsbie, Samer Hattar, James Taylor, Karl Wahlin, Donald J. Zack, Robert J. Johnston
Software Mentions: 1
Published: almost 8 years ago

10.7554/eLife.58496

International authorship and collaboration across bioRxiv preprints
Cited by: 13
Author(s): Richard J. Abdill, Elizabeth M. Adamowicz, Ran Blekhman
Software Mentions: 1
Published: about 6 years ago

10.1186/s12864-015-1678-y

Characterization of a second secologanin synthase isoform producing both secologanin and secoxyloganin allows enhanced de novo assembly of a Catharanthus roseus transcriptome
Cited by: 49
Author(s): Thomas Dugé de Bernonville, Emilien Foureau, Claire Parage, Arnaud Lanoue, Marc Clastre, Monica Arias Londono, Audrey Oudin, Benjamin Houillé, Nicolas Papon, Sébastien Besseau, Gaëlle Glévarec, Lucía Atehortúa, Nathalie Giglioli-Guivarc’h, Benoit St-Pierre, Vincenzo De Luca, Sarah E. O’Connor, Vincent Courdavault
Software Mentions: 1
Published: about 11 years ago

10.7717/peerj.11608

Scaling the effects of ocean acidification on coral growth and coral–coral competition on coral community recovery
Cited by: 4
Author(s): Nicolas R. Evensen, Yves‐Marie Bozec, Peter J. Edmunds, Peter J. Mumby
Software Mentions: 1
Published: about 5 years ago

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