cran: ggplot2 | Projects | Ecosyste.ms: Papers

10.3389/fmicb.2017.01380

Amplicon Sequencing of the slpH Locus Permits Culture-Independent Strain Typing of Lactobacillus helveticus in Dairy Products
Cited by: 8
Author(s): Aline Moser, Daniel Wüthrich, Rémy Bruggmann, Elisabeth Eugster‐Meier, Léo Meile, Stefan Irmler
Software Mentions: 1
Published: almost 9 years ago

10.3389/fmicb.2019.02838

Composition and Diversity of CRISPR-Cas13a Systems in the Genus Leptotrichia
Cited by: 20
Author(s): Shinya Watanabe, Bintao Cui, Kotaro Kiga, Yoshifumi Aiba, Xin-Ee Tan, Yusuke Sato’o, Moriyuki Kawauchi, Tanit Boonsiri, Kanate Thitiananpakorn, Yusuke Taki, Fengyu Li, Aa Haeruman Azam, Yumi Nakada, Teppei Sasahara, Longzhu Cui
Software Mentions: 1
Published: over 6 years ago

10.3390/cells10030664

Combining Nanopore and Illumina Sequencing Permits Detailed Analysis of Insertion Mutations and Structural Variations Produced by PEG-Mediated Transformation in Ostreococcus tauri
Cited by: 3
Author(s): Julie Thomy, Frédéric Sanchez, Marta Gut, Fernando Cruz, Tyler Alioto, Gwenaël Piganeau, Nigel Grimsley, Sheree Yau
Software Mentions: 1
Published: over 5 years ago

10.3390/cells9102159

Characterization of Hematopoiesis in Sickle Cell Disease by Prospective Isolation of Stem and Progenitor Cells
Cited by: 11
Author(s): Seda S. Tolu, Kai Wang, Zi Yan, Shouping Zhang, Karl Roberts, Andrew Crouch, Gracy Sebastian, Mark Chaitowitz, Eric D. Fornari, Evan M. Schwechter, Joan Uehlinger, Deepa Manwani, Caterina P. Minniti, Eric E. Bouhassira
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2019.02852

Increasing Prevalence of ESBL-Producing Multidrug Resistance Escherichia coli From Diseased Pets in Beijing, China From 2012 to 2017
Cited by: 41
Author(s): Yanyun Chen, Zhihai Liu, Yaru Zhang, Zhenbiao Zhang, Lei Lei, Zhaofei Xia
Software Mentions: 1
Published: over 6 years ago

10.3389/fmicb.2019.01001

Genome Analysis of Coxsackievirus A4 Isolates From Hand, Foot, and Mouth Disease Cases in Shandong, China
Cited by: 11
Author(s): Min Wang, Juan Li, Mingxiao Yao, Yawei Zhang, Tao Hu, Michael J. Carr, Sebastián Duchêne, Xing-Cheng Zhang, Zhenjie Zhang, Hong Zhou, Yigang Tong, Shujun Ding, Xianjun Wang, Weifeng Shi
Software Mentions: 1
Published: about 7 years ago

10.7554/eLife.54542

Regulation of stem/progenitor cell maintenance by BMP5 in prostate homeostasis and cancer initiation
Cited by: 18
Author(s): Mathieu Tremblay, Sophie Viala, Maxwell Er Shafer, Adda-Lee Graham-Paquin, Chloe Liu, Maxime Bouchard
Software Mentions: 1
Published: almost 6 years ago

10.3390/cells10082081

Ewing Sarcoma-Derived Extracellular Vesicles Impair Dendritic Cell Maturation and Function
Cited by: 13
Author(s): Hendrik Gassmann, Kira Schneider, Valentina Evdokimova, Peter Ruzanov, Sebastian Johannes Schober, Busheng Xue, Kristina von Heyking, Melanie Thiede, G. Richter, Michael W. Pfaffl, Elfriede Noeßner, Lincoln Stein, Poul H. Sorensen, Stefan Burdach, Uwe Thiel
Software Mentions: 1
Published: almost 5 years ago

10.3389/fmicb.2019.02447

Microbial Production of the Off-Flavor Geosmin in Tilapia Production in Brazilian Water Reservoirs: Importance of Bacteria in the Intestine and Other Fish-Associated Environments
Cited by: 21
Author(s): Mie Bech Lukassen, Nadieh de Jonge, Sabine M Bjerregaard, Raju Podduturi, Niels O. G. Jørgensen, Mikael Agerlin Petersen, Gianmarco Silva David, Reinaldo José Silva, Jeppe Lund Nielsen
Software Mentions: 1
Published: over 6 years ago

10.1016/j.celrep.2017.09.092

Fumarate Hydratase Loss Causes Combined Respiratory Chain Defects
Cited by: 59
Author(s): Petros A. Tyrakis, Marie E. Yurkovich, Marco Sciacovelli, Evangelia K. Papachristou, Hannah R. Bridges, Edoardo Gaude, A. Schreiner, Clive S. D’Santos, Judy Hirst, Juan R. Hernández-Fernaud, Roger Springett, John R. Griffiths, Christian Frezza
Software Mentions: 1
Published: over 8 years ago

10.3389/fmicb.2019.03110

Transcriptome Sequencing of Listeria monocytogenes Reveals Major Gene Expression Changes in Response to Lactic Acid Stress Exposure but a Less Pronounced Response to Oxidative Stress
Cited by: 29
Author(s): Bienvenido W. Cortes, Annabel L. Naditz, Justin M. Anast, Stephan Schmitz‐Esser
Software Mentions: 1
Published: over 6 years ago

10.3389/fmicb.2021.699788

Edging on Mutational Bias, Induced Natural Selection From Host and Natural Reservoirs Predominates Codon Usage Evolution in Hantaan Virus
Cited by: 9
Author(s): Galal Ata, Hao Wang, Haoxiang Bai, Xiaoting Yao, Shiheng Tao
Software Mentions: 1
Published: almost 5 years ago

10.7554/eLife.62648

Distinct clonal evolution of B-cells in HIV controllers with neutralizing antibody breadth
Cited by: 10
Author(s): Deniz Cizmeci, Giuseppe Lofano, Evan Rossignol, Anne‐Sophie Dugast, Dongkyoon Kim, Guy Cavet, Ngan Thi Kim Nguyen, Yann Chong Tan, Michael S. Seaman, Galit Alter, Boris Jülg
Software Mentions: 1
Published: about 5 years ago

10.1186/s12915-021-01085-2

An economical and highly adaptable optogenetics system for individual and population-level manipulation of Caenorhabditis elegans
Cited by: 1
Author(s): Mandy Koopman, Leen Janssen, Ellen A. A. Nollen
Software Mentions: 1
Published: almost 5 years ago

10.1111/cpr.12724

Rbm14 maintains the integrity of genomic DNA during early mouse embryogenesis via mediating alternative splicing
Cited by: 7
Author(s): Jing Li, Chenxin Wang, Guihai Feng, Linlin Zhang, Guilai Chen, Hao Sun, Jiaqiang Wang, Ying Zhang, Qi Zhou, Wei Li
Software Mentions: 1
Published: over 6 years ago

10.1007/s00018-020-03597-6

The functional characteristics of optogenetic gene therapy for vision restoration
Cited by: 8
Author(s): Moritz Lindner, Michael James Gilhooley, Stuart N. Peirson, Steven Hughes, Mark W. Hankins
Software Mentions: 1
Published: almost 6 years ago

10.1186/s11658-021-00261-0

β-elemene alleviates airway stenosis via the ILK/Akt pathway modulated by MIR143HG sponging miR-1275
Cited by: 6
Author(s): Guoying Zhang, Cheng Xue, Yiming Zeng
Software Mentions: 1
Published: about 5 years ago

10.1016/j.cmet.2017.09.003

Citrobacter rodentium Subverts ATP Flux and Cholesterol Homeostasis in Intestinal Epithelial Cells In Vivo
Cited by: 59
Author(s): Cédric N. Berger, Valérie F. Crepin, Theodoros I. Roumeliotis, James C. Wright, Danielle Carson, Meirav Pevsner‐Fischer, R. Christopher D. Furniss, Gordon Dougan, Mally Dori-Bachash, Lu Yu, Abigail Clements, James W. Collins, Eran Elinav, Gérald Larrouy-Maumus, Jyoti S. Choudhary, Gad Frankel
Software Mentions: 1
Published: over 8 years ago

10.3390/cancers13061471

Epithelial Mutant p53 Promotes Resistance to Anti-PD-1-Mediated Oral Cancer Immunoprevention in Carcinogen-Induced Mouse Models
Cited by: 4
Author(s): Jin Wang, Yuan Hu, Vicente Escamilla-Rivera, Cassandra L. Gonzalez, Lin Tang, Bingbing Wang, Adel K. El‐Naggar, Jeffrey N. Myers, Carlos Caulín
Software Mentions: 1
Published: about 5 years ago

10.3390/cancers12082151

Germline Genetic Findings Which May Impact Therapeutic Decisions in Families with a Presumed Predisposition for Hereditary Breast and Ovarian Cancer
Cited by: 4
Author(s): Carolina Velázquez, Kim De Leeneer, Eva Esteban-Cardeñosa, Francisco Avila Cobos, Enrique Lastra, Luis E. Abella, Virginia de la Cruz, Carmen D. Lobatón, Kathleen Claes, Mercedes Durán, Mar Infante
Software Mentions: 1
Published: almost 6 years ago

10.3390/cancers13061327

Integrated Metabolomics and Transcriptomics Analysis of Monolayer and Neurospheres from Established Glioblastoma Cell Lines
Cited by: 6
Author(s): Joana Peixoto, Sudha Janaki‐Raman, Lisa Schlicker, W. Schmitz, Susanne Walz, Alina M Winkelkotte, Christel Herold‐Mende, Paula Soares, Almut Schulze, Jorge Lima
Software Mentions: 1
Published: over 5 years ago

10.3390/cancers12082000

Discovery of Prognostic Markers for Early-Stage High-Grade Serous Ovarian Cancer by Maldi-Imaging
Cited by: 11
Author(s): Hagen Kulbe, Oliver Klein, Zhiyang Wu, Eliane Tabea Taube, Wanja Kassuhn, David Horst, Silvia Darb‐Esfahani, Paul Jank, Salem Abobaker, Frauke Ringel, Andreas du Bois, Florian Heitz, Jalid Sehouli, Elena Ioana Braicu
Software Mentions: 1
Published: almost 6 years ago

10.3390/cancers11091353

CYP2D6 Genotype Predicts Plasma Concentrations of Tamoxifen Metabolites in Ethiopian Breast Cancer Patients
Cited by: 13
Author(s): Jemal Hussien Ahmed, Eyasu Makonnen, Alan Fotoohi, Abraham Aseffa, Rawleigh Howe, Eleni Aklillu
Software Mentions: 1
Published: almost 7 years ago

10.7554/eLife.65604

A call to eradicate non-inclusive terms from the life sciences
Cited by: 6
Author(s): Aziz Khan
Software Mentions: 1
Published: over 5 years ago

10.3390/cancers12082045

Early Change in the Plasma Levels of Circulating Soluble Immune Checkpoint Proteins in Patients with Unresectable Hepatocellular Carcinoma Treated by Lenvatinib or Transcatheter Arterial Chemoembolization
Cited by: 10
Author(s): Naoshi Odagiri, Hai Hoang, Lê Thị Thanh Thủy, Minh Phuong Dong, Maito Suoh, Kohei Kotani, Atsushi Hagihara, Sawako Uchida‐Kobayashi, Masaru Enomoto, Norifumi Kawada
Software Mentions: 1
Published: almost 6 years ago

10.3390/cancers13184625

Targeting OLFML3 in Colorectal Cancer Suppresses Tumor Growth and Angiogenesis, and Increases the Efficacy of Anti-PD1 Based Immunotherapy
Cited by: 8
Author(s): Jimmy Stalin, Beat A. Imhof, Oriana Coquoz, Rachel Jeitziner, Pascal Hammel, Thomas Alexander Mckee, Stéphane Jemelin, Marine Poittevin, Marc Pocard, Thomas Matthes, Rachid Kaci, Mauro Delorenzi, Curzio Rüegg, Marijana Miljkovic‐Licina
Software Mentions: 1
Published: almost 5 years ago

10.3389/fmicb.2020.01214

Candidatus Amarolinea and Candidatus Microthrix Are Mainly Responsible for Filamentous Bulking in Danish Municipal Wastewater Treatment Plants
Cited by: 35
Author(s): Marta Nierychlo, Simon Jon McIlroy, Sergey Kucheryavskiy, Chenjing Jiang, Anja Ziegler, Zivile Kondrotaite, Mikkel Stokholm-Bjerregaard, Per Halkjær Nielsen
Software Mentions: 1
Published: about 6 years ago

10.3390/cancers13020275

Role of Omentin in Obesity Paradox in Lung Cancer
Cited by: 8
Author(s): S.C. Parida, Sumit Siddharth, Dipali Sharma
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2015.00415

Ecological prevalence, genetic diversity, and epidemiological aspects of Salmonella isolated from tomato agricultural regions of the Virginia Eastern Shore
Cited by: 64
Author(s): Rebecca Bell, Jie Zheng, Erik Burrows, Sarah Allard, Charles Y. Wang, Christine E. Keys, David Melka, Errol Strain, Yan Luo, Marc W. Allard, Steven L. Rideout, Eric W. Brown
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0220485

Toxicity and bioaccumulation of Cadmium, Copper and Zinc in a direct comparison at equitoxic concentrations in common carp (Cyprinus carpio) juveniles
Cited by: 36
Author(s): Vyshal Delahaut, Božidar Rašković, Marta Satorres Salvado, Lieven Bervoets, Ronny Blust, Gudrun De Boeck
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0183765

Association between statin use, the vaginal microbiome, and Gardnerella vaginalis vaginolysin-mediated cytotoxicity
Cited by: 18
Author(s): Abdallah A. Abdelmaksoud, Philippe H. Girerd, Erin M. Garcia, J. Paul Brooks, Lauren M. Leftwich, Nihar U. Sheth, Steven Bradley, Myrna G. Serrano, Jennifer M. Fettweis, Bernice Huang, Jerome F. Strauss, Gregory A. Buck, Kimberly K. Jefferson
Software Mentions: 1
Published: almost 9 years ago

10.3390/cancers12051166

Multicenter Evaluation of Independent High-Throughput and RT-qPCR Technologies for the Development of Analytical Workflows for Circulating miRNA Analysis
Cited by: 9
Author(s): Anna Babayan, Martin Neumann, Andrei Herdean, James Shaffer, Melanie Janning, Franca Kobus, Sonja Loges, Francesca Di Pasquale, Mikael Kubista, Martin Schlumpberger, Rita Lampignano, Thomas Krahn, Thomas Schlange, Markus Sprenger-Haussels, Klaus Pantel, Vera Kloten
Software Mentions: 1
Published: about 6 years ago

10.1038/s41389-020-0237-9

PRMT1 promotes neuroblastoma cell survival through ATF5
Cited by: 21
Author(s): Zhong Yan Hua, Jeanne N. Hansen, Miao He, Shang Dai, Yuni Choi, Melody D. Fulton, S. Lloyd, Marianna Szemes, Songbai Ji, Han‐Fei Ding, James M. Angelastro, Fenfen Xiang, Hui Ping Li, Chao Wu, Songfan Yang, Karim Malik, Xiaomin Bao, Y. George Zheng, Chang Mei Liu, Nina Felice Schor, Zhi Jie Li, Xing Guo Li
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-021-86244-9

Finding Nemo’s clock reveals switch from nocturnal to diurnal activity
Cited by: 7
Author(s): Gregor Schalm, Kristina Bruns, Nina Drachenberg, Nathalie Geyer, Nicholas S. Foulkes, Cristiano Bertolucci, Gabriele Gerlach
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0196051

Complications and risk management in the use of the reaming-irrigator-aspirator (RIA) system: RIA is a safe and reliable method in harvesting autologous bone graft
Cited by: 27
Author(s): Patrick Haubruck, Julian Ober, Raban Arved Heller, Matthias Miska, Gerhard Schmidmaier, Michael C. Tanner
Software Mentions: 1
Published: about 8 years ago

10.1016/j.dib.2020.106336

Data on draft genome sequence of Caldanaerobacter sp. strain 1523vc, a thermophilic bacterium, isolated from a hot spring of Uzon Caldera, (Kamchatka, Russia)
Cited by: 2
Author(s): Aleksei A. Korzhenkov, Stepan V. Toshchakov, Olga A. Podosokorskaya, М. В. Патрушев, Ilya V. Kublanov
Software Mentions: 1
Published: over 5 years ago

10.1002/fsn3.2082

Genome‐wide association study in diverse Iranian wheat germplasms detected several putative genomic regions associated with stem rust resistance
Cited by: 5
Author(s): Ali Saremirad, M. R. Bihamta, Ali Malihipour, Khodadad Mostafavi, Hadi Alipour
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-021-86590-8

Dynamic bacterial community response to Akashiwo sanguinea (Dinophyceae) bloom in indoor marine microcosms
Cited by: 9
Author(s): Seung Won Jung, JunSu Kang, Joon‐Sang Park, Hyoung Min Joo, Sung-Suk Suh, Di Kang, Taek-Kyun Lee, Hyun-Jung Kim
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-021-86304-0

A novel causality-centrality-based method for the analysis of the impacts of air pollutants on PM2.5 concentrations in China
Cited by: 1
Author(s): Bo-Cheng Wang
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-021-86369-x

Integrating buccal and occlusal dental microwear with isotope analyses for a complete paleodietary reconstruction of Holocene populations from Hungary
Cited by: 5
Author(s): Raquel Hernando, Beatriz Gamarra, Ashley McCall, Olivia Cheronet, Daniel Fernandes, Kendra Sirak, Ryan Schmidt, Marina Lozano, Tamás Szeniczey, Tamás Hajdu, Annamária Bárány, András Kalli, Eszter K Tutkovics, Kitti Köhler, Krisztián Kiss, Judit Koós, Piroska Csengeri, Ágnes Király, Antónia Horváth, Melinda L Hajdu, K. Tóth, R Patay, Robin N. M. Feeney, Ron Pinhasi
Software Mentions: 1
Published: about 5 years ago

10.3390/v13091731

Rapid Extraction and Detection of African Swine Fever Virus DNA Based on Isothermal Recombinase Polymerase Amplification Assay
Cited by: 10
Author(s): Arianna Ceruti, Rea Maja Kobialka, Judah Ssekitoleko, Julius Boniface Okuni, Sandra Blome, Ahmed Abd El Wahed, Uwe Truyen
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41437-020-0322-z

Recent introgression between Taiga Bean Goose and Tundra Bean Goose results in a largely homogeneous landscape of genetic differentiation
Cited by: 11
Author(s): Jente Ottenburghs, Johanna Honka, Gerard Müskens, Hans Ellegren
Software Mentions: 1
Published: about 6 years ago

10.1002/fsn3.2437

Pu‐erh tea extraction alleviates intestinal inflammation in mice with flora disorder by regulating gut microbiota
Cited by: 8
Author(s): Zhifang Zhang, Fei He, Wanwan Yang, Li Yang, Siqi Huang, Hongling Mao, Yan Hou, Rong Xiao
Software Mentions: 1
Published: almost 5 years ago

10.3390/ijms22094721

SWATH Based Quantitative Proteomics Reveals Significant Lipid Metabolism in Early Myopic Guinea Pig Retina
Cited by: 15
Author(s): Jingfang Bian, Ying-Hon Sze, Dennis Y. Tse, Chi‐Ho To, Sally A McFadden, Carly Siu Yin Lam, King-Kit Li, Terry Lam
Software Mentions: 1
Published: about 5 years ago

10.1016/j.fcr.2020.107738

Performance of elite maize genotypes under selected sustainable intensification options in Kenya
Cited by: 8
Author(s): Léonard Rusinamhodzi, Dan Makumbi, James Njeru, Fred Kanampiu
Software Mentions: 1
Published: about 6 years ago

10.1093/femsle/fnz008

Genomic diversity, lifestyles and evolutionary origins of DPANN archaea
Cited by: 132
Author(s): Nina Dombrowski, Jun-Hoe Lee, Tom A. Williams, Pierre Offre, Anja Spang
Software Mentions: 1
Published: over 7 years ago

10.1155/2021/6576210

Integrative Expression and Prognosis Analysis of DHX37 in Human Cancers by Data Mining
Cited by: 5
Author(s): Kang Huang, Tudi Pang, Chang-Jun Tong, Houqing Chen, Yupeng Nie, Jiayi Wu, Yandong Zhang, Ganghong Chen, Wei Zhou, Dazhi Yang
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0257583

Racial and ethnic disparities in HIV diagnoses among heterosexually active persons in the United States nationally and by state, 2018
Cited by: 4
Author(s): Erika G. Martin, Bahareh Ansari, Rachel Hart-Malloy, Dawn K. Smith, Kevin P. Delaney, Thomas L. Gift, Andrés A. Berruti, Monica Trigg, Eli S. Rosenberg
Software Mentions: 1
Published: over 4 years ago

10.12688/wellcomeopenres.10036.2

Pathogenic mycobacteria achieve cellular persistence by inhibiting the Niemann-Pick Type C disease cellular pathway
Cited by: 21
Author(s): Paul Fineran, Emyr Lloyd-Evans, Nathan A. Lack, Nick Platt, Lianne C. Davis, Anthony J. Morgan, Doris Höglinger, Raju V. V. Tatituri, Simon Clark, Ian M. Williams, Patricia W. Tynan, Nada Al Eisa, Evgeniya V. Nazarova, Ann Williams, Antony Galione, Daniel S. Ory, Gurdyal S. Besra, David G. Russell, Michael B. Brenner, Edith Sim, Frances M. Platt
Software Mentions: 1
Published: almost 9 years ago

10.1002/hsr2.393

Standalone sauna vs exercise followed by sauna on cardiovascular function in non‐naïve sauna users: A comparison of acute effects
Cited by: 3
Author(s): Earric Lee, Joel Kostensalo, Peter Willeit, Setor K Kunutsor, Tanjaniina Laukkanen, Francesco Zaccardi, Hassan Khan, Jari A Laukkanen
Software Mentions: 1
Published: over 4 years ago

10.1186/s12955-018-0986-8

Valuing health-related quality of life: systematic variation in health perception
Cited by: 7
Author(s): Manuel B. Huber, Martin Vogelmann, Reiner Leidl
Software Mentions: 1
Published: almost 8 years ago

10.3390/ijms21238950

Exploring the Interaction between the SWI/SNF Chromatin Remodeling Complex and the Zinc Finger Factor CTCF
Cited by: 11
Author(s): Mariangela Valletta, Rosita Russo, Ilaria Baglivo, Veronica Russo, Sara Ragucci, Annamaria Sandomenico, Emanuela Iaccarino, Menotti Ruvo, Italia De Feis, Claudia Angelini, Sara Iachettini, Annamaria Biroccio, Paolo V. Pedone, Angela Chambery
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0179172

Trends in food insecurity for adults with cardiometabolic disease in the United States: 2005-2012
Cited by: 96
Author(s): Seth A. Berkowitz, Theodore S Z Berkowitz, James B. Meigs, Deborah J. Wexler
Software Mentions: 1
Published: about 9 years ago

10.1186/s13005-018-0174-4

Assessing the effect of multibracket appliance treatment on tooth color by using electronic measurement
Cited by: 2
Author(s): Anja Ratzmann, Ch. Schwahn, Anja Treichel, Andreas Faltermeier, Alexander Welk
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-021-87258-z

Gaze-pattern similarity at encoding may interfere with future memory
Cited by: 1
Author(s): Nathalie klein Selle, Matthias Gamer, Yoni Pertzov
Software Mentions: 1
Published: about 5 years ago

10.1186/s13099-021-00409-5

Ectopic gut colonization: a metagenomic study of the oral and gut microbiome in Crohn’s disease
Cited by: 24
Author(s): Shijia Hu, Eileen Png, Michelle Gowans, David Ong, Paola Flórez de Sessions, Jié Song, Niranjan Nagarajan
Software Mentions: 1
Published: over 5 years ago

10.1186/s13099-020-00371-8

Metagenomic analysis of gut microbiome and resistome of diarrheal fecal samples from Kolkata, India, reveals the core and variable microbiota including signatures of microbial dark matter
Cited by: 28
Author(s): Rituparna De, Asish K. Mukhopadhyay, Shanta Dutta
Software Mentions: 1
Published: almost 6 years ago

10.12688/wellcomeopenres.16113.2

Pooled testing conserves SARS-CoV-2 laboratory resources and improves test turn-around time: experience on the Kenyan Coast
Cited by: 11
Author(s): Charles N. Agoti, Martin Mutunga, Arnold W. Lambisia, Domtila Kimani, Robinson Cheruiyot, Patience K. Kiyuka, Clement Lewa, Elijah Gicheru, Metrine Tendwa, Khadija Said Mohammed, Victor Osoti, Johnstone Makale, Brian Tawa, Calleb Odundo, Wesley Cheruiyot, Wilfred Nyamu, Wilson Gumbi, Jedidah Mwacharo, Lydia Nyamako, Edward Otieno, David Amadi, Janet Thoya, Angela Karani, Daisy Mugo, Jennifer Musyoki, Horace Gumba, Salim Mwarumba, Bonface M. Gichuki, Susan Njuguna, Debra Riako, Shadrack Mutua, John N. Gitonga, Yiakon Sein, Brian Bartilol, Shaban Mwangi, Donwilliams O. Omuoyo, John M. Morobe, Zaydah R. de Laurent, Philip Bejon, Lynette Isabella Ochola‐Oyier, Benjamin Tsofa
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-021-86904-w

Tick defensin γ-core reduces Fusarium graminearum growth and abrogates mycotoxins production with high efficiency
Cited by: 7
Author(s): Valentin Leannec-Rialland, Alejandro Cabezas-Cruz, Vessela Atanasova‐Pénichon, Sylvain Chéreau, Nadia Ponts, Miray Tonk, Andreas Vilcinskas, Nathalie Ferrer, James J. Valdés, Florence Richard‐Forget
Software Mentions: 1
Published: about 5 years ago

10.1002/jia2.25044

Inequality in outcomes for adolescents living with perinatally acquired <scp>HIV</scp> in sub‐Saharan Africa: a Collaborative Initiative for Paediatric <scp>HIV</scp> Education and Research (<scp>CIPHER</scp>) Cohort Collaboration analysis
Cited by: 17
Author(s):
Software Mentions: 1
Published: over 8 years ago

10.3390/ijms20194784

Gene Expression of Haloferax volcanii on Intermediate and Abundant Sources of Fixed Nitrogen
Cited by: 4
Author(s): Sungmin Hwang, Nikita E. Chavarria, Rylee K Hackley, Amy K. Schmid, Julie A. Maupin-Furlow
Software Mentions: 1
Published: over 6 years ago

10.1007/s00508-021-01843-w

Risk factors for mortality in infants with congenital diaphragmatic hernia: a single center experience
Cited by: 5
Author(s): Jennifer Bettina Brandt, Tobias Werther, Erika Groth, Erik Küng, Johann Golej, Angelika Berger
Software Mentions: 1
Published: about 5 years ago

10.1136/gutjnl-2017-315631

Single-cell RNAseq reveals seven classes of colonic sensory neuron
Cited by: 181
Author(s): James R.F. Hockley, Toni S Taylor, Gerard Callejo, Anna Wilbrey, Alex Gutteridge, Karsten Bach, Wendy J. Winchester, D Bulmer, Gordon McMurray, Ewan St. John Smith
Software Mentions: 1
Published: over 8 years ago

10.1016/j.dib.2021.106759

Application of one-, three-, and seven-day forecasts during early onset on the COVID-19 epidemic dataset using moving average, autoregressive, autoregressive moving average, autoregressive integrated moving average, and naïve forecasting methods
Cited by: 5
Author(s): Christopher J. Lynch, Ross Gore
Software Mentions: 1
Published: about 5 years ago

10.1016/j.cell.2019.03.001

A Compendium of Mutational Signatures of Environmental Agents
Cited by: 386
Author(s): Jill E. Kucab, Xueqing Zou, Sandro Morganella, Madeleine Joel, Arjun Scott Nanda, Eszter Nagy, Céline Gomez, Andrea Degasperi, Robert G. Harris, Stephen Jackson, Volker M. Arlt, David H. Phillips, Serena Nik-Zainal
Software Mentions: 1
Published: about 7 years ago

10.1017/gheg.2020.3

The Nigerian Bioinformatics and Genomics Network (NBGN): a collaborative platform to advance bioinformatics and genomics in Nigeria
Cited by: 7
Author(s): Segun Fatumo, ThankGod Echezona Ebenezer, Chinwe Ekenna, Itunuoluwa Isewon, Umar Ahmad, Charles Oluwaseun Adetunji, Elijah Kolawole Oladipo, Marion O. Adebiyi, Ezekiel Adebiyi, Oyekanmi Nashiru, Nigerian Bioinformatics
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-021-87909-1

Assessment of phylo-functional coherence along the bacterial phylogeny and taxonomy
Cited by: 5
Author(s): Marcos Parras-Moltó, Daniel Aguirre de Cárcer
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-021-86193-3

Optimising assessment of dark adaptation data using time to event analysis
Cited by: 4
Author(s): Bethany E. Higgins, Giovanni Montesano, Alison Binns, David P. Crabb
Software Mentions: 1
Published: about 5 years ago

10.1186/s12957-019-1774-6

Rabbit VX2 lung tumor models can form early nodal metastases
Cited by: 2
Author(s): Alexander Gregor, Kosuke Fujita, Nicholas Bernards, Tomonari Kinoshita, Yamato Motooka, Terunaga Inage, Tsukasa Ishiwata, Zhenchian Chen, Hideki Ujiie, Chang Young Lee, Kazuhiro Yasufuku
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-021-87113-1

Structural equation modeling to shed light on the controversial role of climate on the spread of SARS-CoV-2
Cited by: 10
Author(s): Alessia Spada, Francesco Tucci, Aldo Ummarino, Paolo Pio Ciavarella, Nicholas Calà, Vincenzo Troiano, Michèle Caputo, Raffaele Ianzano, Silvia Corbo, Marco de Biase, Nicola Fascia, Chiara Forte, Giorgio Gambacorta, Gabriele Maccione, Giuseppina Prencipe, Michele Tomaiuolo, Antonio Tucci
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-021-87717-7

Individual and collective foraging in autonomous search agents with human intervention
Cited by: 1
Author(s): Daniel Schloesser, Derek Hollenbeck, Christopher T. Kello
Software Mentions: 1
Published: about 5 years ago

10.1111/gcbb.12419

Could Miscanthus replace maize as the preferred substrate for anaerobic digestion in the United Kingdom? Future breeding strategies
Cited by: 10
Author(s): Sarah Purdy, Anne Maddison, Christopher Nunn, Ana L. Winters, Emma Timms-Taravella, Cerys Jones, John Clifton‐Brown, Iain S. Donnison, Joe Gallagher
Software Mentions: 1
Published: over 9 years ago

10.1002/glia.24048

Elovl5 is required for proper action potential conduction along peripheral myelinated fibers
Cited by: 6
Author(s): Eriola Hoxha, Ilaria Balbo, Roberta Parolisi, Matteo Audano, Francesca Montarolo, Francesco Ravera, Michela Guglielmotto, Luísa Muratori, Stefania Raimondo, Eleonora DiGregorio, Annalisa Buffo, Alfredo Brusco, Barbara Borroni, Nico Mitro, Donatella Caruso, Filippo Tempia
Software Mentions: 1
Published: almost 5 years ago

10.1002/glia.23144

Suppression of SNARE-dependent exocytosis in retinal glial cells and its effect on ischemia-induced neurodegeneration
Cited by: 13
Author(s): Lysann Wagner, Thomas Pannicke, Vanessa Rupprecht, Ina Frommherz, Cornelia Volz, Peter Illéš, Johannes Hirrlinger, Herbert Jägle, Veronica Egger, Philip G. Haydon, Frank W. Pfrieger, Antje Grosche
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0205429

Tool making cockatoos adjust the lengths but not the widths of their tools to function
Cited by: 14
Author(s): Alice M. I. Auersperg, Celeste de Kock, Mark O’Hara, Ludwig Huber
Software Mentions: 1
Published: over 7 years ago

10.1093/gigascience/giab050

SCIGA: Software for large-scale, single-cell immunoglobulin repertoire analysis
Cited by: 0
Author(s): Haocheng Ye, Lin Cheng, Bin Ju, Gang Xu, Yang Liu, Shuye Zhang, Lifei Wang, Zheng Zhang
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-021-88294-5

Feasibility of CT-derived myocardial strain measurement in patients with advanced cardiac valve disease
Cited by: 11
Author(s): Marius Vach, Johanna Vogelhuber, Marcel Weber, Alois M. Sprinkart, Claus Christian Pieper, Wolfgang Block, Daniel Kuetting, Ulrike Attenberger, Julian A. Luetkens
Software Mentions: 1
Published: about 5 years ago

10.1002/2211-5463.12599

Incorporating clickers into an enzymology course improves student performance
Cited by: 3
Author(s): Claire Stines‐Chaumeil, Patrick Paumard, Mark A. Hooks
Software Mentions: 1
Published: over 7 years ago

10.1093/gigascience/giab004

FASTQuick: rapid and comprehensive quality assessment of raw sequence reads
Cited by: 0
Author(s): Fan Zhang, Hyun Min Kang
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-021-88537-5

Surveillance of respiratory syncytial virus infections in adults, Austria, 2017 to 2019
Cited by: 4
Author(s): Lorenz Schubert, Johanna Steininger, Felix Lötsch, Anna Nele Herdina, Monika Redlberger‐Fritz, Selma Tobudic, Michael Kundi, Robert Straßl, Christoph Steininger
Software Mentions: 1
Published: about 5 years ago

10.1016/j.dib.2019.103757

Data on draft genome sequence of Bacillus sp. strain VKPM B-3276 isolated from Culex pipiens larvae
Cited by: 3
Author(s): V.V. Zinina, Aleksei A. Korzhenkov, A.V. Tepliuk, A.A. Kanikovskaja, М. В. Патрушев, Ilya V. Kublanov, Stepan V. Toshchakov
Software Mentions: 1
Published: about 7 years ago

10.1155/2020/3708231

Identification and Validation of an Energy Metabolism-Related lncRNA-mRNA Signature for Lower-Grade Glioma
Cited by: 3
Author(s): J. W. Zhao, Le Wang, Bo Wei
Software Mentions: 1
Published: almost 6 years ago

10.3390/ijms22105183

Biophysical and Biochemical Comparison of Extracellular Vesicles Produced by Infective and Non-Infective Stages of Trypanosoma cruzi
Cited by: 16
Author(s): Lissette Retana Moreira, Alexa Prescilla-Ledezma, Alberto Cornet-Gómez, Fernando Gervilla Linares, Ana Belén Jódar-Reyes, Jorge I. González Fernández, Ana Karina Ibarrola Vannucci, Luis Miguel De Pablos, Antonio Osuna
Software Mentions: 1
Published: about 5 years ago

10.7717/peerj.4364

Genomic analysis of morphometric traits in bighorn sheep using the Ovine Infinium® HD SNP BeadChip
Cited by: 13
Author(s): Joshua M. Miller, Marco Festa‐Bianchet, David W. Coltman
Software Mentions: 1
Published: over 8 years ago

10.1093/gigascience/giy024

Differential protein expression and post-translational modifications in metronidazole-resistant Giardia duodenalis
Cited by: 37
Author(s): Samantha J. Emery, Louise Baker, Brendan R E Ansell, Mehdi Mirzaei, Paul A. Haynes, Malcom J McConville, Staffan G. Svärd, Aaron R. Jex
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0098076

Genome-Wide Analysis of Cold Adaptation in Indigenous Siberian Populations
Cited by: 119
Author(s): Alexia Cardona, Luca Pagani, Tiago Antão, Daniel J. Lawson, Christina A. Eichstaedt, Bryndís Yngvadóttir, Ma Than Than Shwe, Joseph Wee, Irene Gallego Romero, Srilakshmi M. Raj, Mait Metspalu, Richard Villems, Eske Willerslev, Chris Tyler‐Smith, B. A. Malyarchuk, Miroslava Derenko, Toomas Kivisild
Software Mentions: 1
Published: about 12 years ago

10.1038/s41598-021-88286-5

Interactive effects of incentive value and valence on the performance of discrete action sequences
Cited by: 4
Author(s): Tyler J. Adkins, Bradley S. Gary, Taraz G. Lee
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-021-88774-8

Shorter heels are linked with greater elastic energy storage in the Achilles tendon
Cited by: 8
Author(s): A. D. Foster, Barbara A. Block, Florian F Capobianco, John T Peabody, Nicholas A Puleo, Adrianna Luz García Vegas, Jesse W. Young
Software Mentions: 1
Published: about 5 years ago

10.1186/s40168-020-00896-9

Maternal gut microbes shape the early-life assembly of gut microbiota in passerine chicks via nests
Cited by: 35
Author(s): Cheng-Yu Chen, Chih-Kuan Chen, Yiying Chen, Andrew Fang, Grace Tzun-Wen Shaw, Chih‐Ming Hung, Daryi Wang
Software Mentions: 1
Published: almost 6 years ago

10.1093/gigascience/giy015

Piggy: a rapid, large-scale pan-genome analysis tool for intergenic regions in bacteria
Cited by: 47
Author(s): Harry A. Thorpe, Sion C. Bayliss, Samuel K. Sheppard, Edward J. Feil
Software Mentions: 1
Published: over 8 years ago

10.3390/ijms21228578

Succinic Semialdehyde Dehydrogenase Deficiency: In Vitro and In Silico Characterization of a Novel Pathogenic Missense Variant and Analysis of the Mutational Spectrum of ALDH5A1
Cited by: 3
Author(s): Heiko Brennenstuhl, Miroslava Didiášová, Birgit Assmann, Mariarita Bertoldi, Gianluca Molla, Sabine Jung-Klawitter, Oya Kuseyri Hübschmann, Julian Schröter, Thomas Opladen, Ritva Tikkanen
Software Mentions: 1
Published: over 5 years ago

10.3390/cancers13010028

High Risk α-HPV E6 Impairs Translesion Synthesis by Blocking POLη Induction
Cited by: 6
Author(s): Sebastian O. Wendel, Jazmine A. Snow, Tyler Bastian, Laura Brown, Candy Hernandez, Emily Burghardt, Andrew Kahn, Vaibhav Murthy, Daniel Neill, Zachary C Smith, Kevin A. Ault, Ossama Tawfik, Cen Wu, Nicholas A. Wallace
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0099782

Human Coronaviruses Associated with Upper Respiratory Tract Infections in Three Rural Areas of Ghana
Cited by: 63
Author(s): Michael Owusu, Augustina Annan, Victor M. Corman, Richard Larbi, Priscilla Anti, Jan Felix Drexler, Olivia Agbenyega, Yaw Adu‐Sarkodie, Christian Drosten
Software Mentions: 1
Published: almost 12 years ago

10.1007/s40037-018-0481-2

Validity evidence for programmatic assessment in competency-based education
Cited by: 30
Author(s): Harold G. J. Bok, Lubberta H. de Jong, Thomas A. O’Neill, Connor Maxey, Kent Hecker
Software Mentions: 1
Published: over 7 years ago

10.1002/ps.6206

Lifecycle of the invasive omnivore, <scp> Forficula auricularia </scp> , in Australian grain growing environments
Cited by: 8
Author(s): Matthew Binns, Ary A. Hoffmann, M. van Helden, Thomas Heddle, Matthew P. Hill, Sarina Macfadyen, M. Nash, Paul A Umina
Software Mentions: 1
Published: over 5 years ago

10.1186/s13073-021-00946-3

Characterizing DNA methylation signatures and their potential functional roles in Merkel cell carcinoma
Cited by: 10
Author(s): Hemant Gujar, Arjun Mehta, Hongtao Li, Yvonne Tsai, Xianyang Qiu, Daniel J. Weisenberger, Miriam Galvonas Jasiulionis, Gino K In, Gangning Liang
Software Mentions: 1
Published: almost 5 years ago

10.1016/j.dib.2019.104690

Dataset of plant community composition in the Zumwalt Prairie Preserve, Oregon, USA
Cited by: 2
Author(s): Bryan A. Endress, Joshua P. Averett
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-021-89007-8

Early detection of language categories in face perception
Cited by: 6
Author(s): Cristina Baus, Elisa Ruiz-Tada, Carles Escera, Albert Costa
Software Mentions: 1
Published: about 5 years ago

10.1155/2020/6820179

Prediction Model of HBsAg Seroclearance in Patients with Chronic HBV Infection
Cited by: 3
Author(s): Jing Cao, Jiao Gong, Christ-Jonathan Tsia Hin Fong, Cuicui Xiao, Guoli Lin, Xiangyong Li, Yusheng Jie, Yutian Chong
Software Mentions: 1
Published: almost 6 years ago

10.3390/ijms21218218

Defining Metaniches in the Oral Cavity According to Their Microbial Composition and Cytokine Profile
Cited by: 15
Author(s): Corinna L Seidel, Roman G. Gerlach, Patrick Wiedemann, Matthias Weider, Gabriele Rodrian, Michael Häder, Benjamin Frey, Udo S. Gaipl, Aline Bözec, Fabian Cieplik, Christian Kirschneck, Christian Bogdan, Lina Gölz
Software Mentions: 1
Published: over 5 years ago

Projects: cran: ggplot2

Enhanced Analysis

Science Score: 100/100

Bonuses:

Papers Mentioning ggplot2 11,441