cran: ggplot2 | Projects | Ecosyste.ms: Papers

10.3389/fgene.2020.00303

Genomic Sequencing Capacity, Data Retention, and Personal Access to Raw Data in Europe
Cited by: 7
Author(s): Shaman Narayanasamy, Varvara Markina, Adrian Thorogood, Adriana Blazkova, Mahsa Shabani, Bartha Maria Knoppers, Barbara Prainsack, Robert Koesters
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-018-36188-4

Deciphering the evolution of Deception Island’s magmatic system
Cited by: 28
Author(s): Adelina Geyer, Antonio M. Álvarez‐Valero, Guillem Gisbert, M. Aulinas, Daniel Hernández-Barreña, Agustín Lobo, Joan Martı́
Software Mentions: 1
Published: almost 8 years ago

10.1186/s13073-021-00946-3

Characterizing DNA methylation signatures and their potential functional roles in Merkel cell carcinoma
Cited by: 10
Author(s): Hemant Gujar, Arjun Mehta, Hongtao Li, Yvonne Tsai, Xianyang Qiu, Daniel J. Weisenberger, Miriam Galvonas Jasiulionis, Gino K In, Gangning Liang
Software Mentions: 1
Published: about 5 years ago

10.2196/14766

Serious Gaming During Multidisciplinary Rehabilitation for Patients With Chronic Pain or Fatigue Symptoms: Mixed Methods Design of a Realist Process Evaluation
Cited by: 8
Author(s): Miel A. P. Vugts, A.M.E.E. Zedlitz, Margot C. W. Joosen, Hubertus J. M. Vrijhoef
Software Mentions: 1
Published: over 6 years ago

10.1111/evj.12766

Quantification of the effect of instrumentation error in objective gait assessment in the horse on hindlimb symmetry parameters
Cited by: 14
Author(s): F. M. Serra Bragança, Marie Rhodin, Thomas Wiestner, Elin Hernlund, Thilo Pfau, P. R. van Weeren, Michael A Weishaupt
Software Mentions: 1
Published: almost 9 years ago

10.1128/mBio.00478-21

Genotypic and Phenotypic Diversity among Human Isolates of Akkermansia muciniphila
Cited by: 51
Author(s): Bradford Becken, Lauren Davey, Dustin R. Middleton, Katherine D. Mueller, Agastya Sharma, Zachary C. Holmes, Eric P. Dallow, Brenna C Remick, Gregory M. Barton, Lawrence A. David, James V. McCann, Sarah Armstrong, Per Malkus, Raphael H. Valdivia
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2016.01767

Differential Localization of Chemotactic Signaling Arrays during the Lifecycle of Vibrio parahaemolyticus
Cited by: 14
Author(s): Jan Heering, Simon Ringgaard
Software Mentions: 1
Published: almost 10 years ago

10.3389/fmicb.2020.00575

Integrative Proteome and Acetylome Analyses of Murine Responses to Cryptococcus neoformans Infection
Cited by: 10
Author(s): Hailong Li, Yanjian Li, Tianshu Sun, Wei Du, Zhijie Zhang, Dancheng Li, Chen Ding
Software Mentions: 1
Published: over 6 years ago

10.3390/proteomes6040045

A Comparative Quantitative LC-MS/MS Profiling Analysis of Human Pancreatic Adenocarcinoma, Adjacent-Normal Tissue, and Patient-Derived Tumour Xenografts
Cited by: 20
Author(s): Orla Coleman, Michael Henry, Fiona O’Neill, Sandra Roche, Niall Swan, Lorraine Boyle, J. J. Murphy, Justine Meiller, Neil T. Conlon, Justin Geoghegan, Kevin C. Conlon, Vincent J. Lynch, Ninfa L. Straubinger, Robert M. Straubinger, G. McVey, M. Moriarty, Martin Clynes
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41598-018-37768-0

Bioinformatics Analysis of Metabolism Pathways of Archaeal Energy Reserves
Cited by: 22
Author(s): Liang Wang, Qinghua Liu, Xiang Wu, Yue Huang, Michael J. Wise, Zhanzhong Liu, Wei Wang, Jian Hu, Qianqian Wang
Software Mentions: 1
Published: over 7 years ago

10.7554/eLife.52770

Proximity proteomics in a marine diatom reveals a putative cell surface-to-chloroplast iron trafficking pathway
Cited by: 13
Author(s): Jernej Turnšek, John K. Brunson, Maria del Pilar Martinez Viedma, Thomas J. Deerinck, Aleš Horák, Miroslav Oborník, Vincent A. Bielinski, Andrew E. Allen
Software Mentions: 1
Published: over 5 years ago

10.1007/s00406-020-01229-5

Distress severity in perceptual anomalies moderates the relationship between prefrontal brain structure and psychosis proneness in nonclinical individuals
Cited by: 3
Author(s): Ulrika Evermann, Simon Schmitt, Tina Meller, Julia‐Katharina Pfarr, Sarah Grezellschak, Igor Nenadić
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-018-38274-z

IPSE, a urogenital parasite-derived immunomodulatory protein, ameliorates ifosfamide-induced hemorrhagic cystitis through downregulation of pro-inflammatory pathways
Cited by: 15
Author(s): Evaristus C. Mbanefo, Liu Le, Rebecca Zee, Nirad Banskota, Kenji Ishida, Luke F. Pennington, Justin I. Odegaard, Theodore S. Jardetzky, Abdulaziz Alouffi, Franco H. Falcone, Michael H. Hsieh
Software Mentions: 1
Published: over 7 years ago

10.7554/eLife.23382

Mice deficient of Myc super-enhancer region reveal differential control mechanism between normal and pathological growth
Cited by: 49
Author(s): Kashyap Dave, Inderpreet Sur, Jian Yan, Jilin Zhang, Eevi Kaasinen, Fan Zhong, Leander Blaas, Xiaoze Li, Shabnam Kharazi, Charlotte Gustafsson, Annick De Paepe, Robert Månsson, Jussi Taipale
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-019-38538-2

The genetic and epigenetic association of LDL Receptor Related Protein 1B (LRP1B) gene with childhood obesity
Cited by: 7
Author(s): Suman Lee
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-018-38127-9

In-Depth Characterization of Monocyte-Derived Macrophages using a Mass Cytometry-Based Phagocytosis Assay
Cited by: 101
Author(s): Daniel Schulz, Yannik Severin, Vito Riccardo Tomaso Zanotelli, Bernd Bodenmiller
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-019-38713-5

Urinary proteome signature of Renal Cysts and Diabetes syndrome in children
Cited by: 15
Author(s): P Ricci, Pedro Magalhães, Magdalena Krochmal, Martin Pejchinovski, Erica Daina, Maria Rosa Caruso, Laura Goea, Iwona Belczacka, Giuseppe Remuzzi, Muriel Umbhauer, Jens Drube, Lars Pape, Harald Mischak, Stéphane Decramer, Franz Schaefer, Joost P. Schanstra, Silvia Cereghini, Petra Zürbig
Software Mentions: 1
Published: over 7 years ago

10.1186/s12968-019-0531-x

Kidney transplantation is associated with reduced myocardial fibrosis. A cardiovascular magnetic resonance study with native T1 mapping
Cited by: 13
Author(s): Mariana Moraes Contti, M. P. Barbosa, Alejandra Del Carmen Villanueva Maurício, Hong Si Nga, Mariana Farina Valiatti, Henrique Mochida Takase, Ariane Moysés Bravin, Luís Gustavo Modelli de Andrade
Software Mentions: 1
Published: over 7 years ago

10.7554/eLife.59540

A gradient of Wnt activity positions the neurosensory domains of the inner ear
Cited by: 9
Author(s): Magdalena Żak, Nicolas Daudet
Software Mentions: 1
Published: over 5 years ago

10.7554/eLife.58662

Functional partitioning of a liquid-like organelle during assembly of axonemal dyneins
Cited by: 32
Author(s): Chanjae Lee, Rachael M. Cox, Ophelia Papoulas, Amjad Horani, Kevin Drew, Caitlin C. Devitt, Steven L. Brody, Edward M. Marcotte, John B. Wallingford
Software Mentions: 1
Published: almost 6 years ago

10.3389/fpsyg.2021.642641

Not Too Much and Not Too Little: Information Processing for a Good Purchase Decision
Cited by: 5
Author(s): Claudia Vogrincic-Haselbacher, Joachim I. Krueger, Brigitta Lurger, Isabelle Dinslaken, Julian Anslinger, Florian Caks, Arnd Florack, Hilmar Brohmer, Ursula Athenstaedt
Software Mentions: 1
Published: over 5 years ago

10.1128/mBio.01332-21

Biochemical Barriers on the Path to Ocean Anoxia?
Cited by: 1
Author(s): Stephen J. Giovannoni, Francis Chan, Edward W. Davis, Curtis Deutsch, Sarah M. Wolf
Software Mentions: 1
Published: about 5 years ago

10.1093/cid/cix185

Treatment Response in Enteric Fever in an Era of Increasing Antimicrobial Resistance: An Individual Patient Data Analysis of 2092 Participants Enrolled into 4 Randomized, Controlled Trials in Nepal
Cited by: 36
Author(s): Corinne N. Thompson, Abhilasha Karkey, Sabina Dongol, Amit Arjyal, Marcel Wolbers, Thomas C. Darton, Jeremy Farrar, Guy Thwaites, Christiane Dolecek, Buddha Basnyat, Stephen Baker
Software Mentions: 1
Published: over 9 years ago

10.1128/mBio.00895-21

Sinorhizobium meliloti Functions Required for Resistance to Antimicrobial NCR Peptides and Bacteroid Differentiation
Cited by: 12
Author(s): Quentin Nicoud, Quentin Barrière, Nicolas Busset, Sara Dendene, Dmitrii Y. Travin, Mickaël Bourge, Romain Le Bars, Claire Boulogne, Marie Lecroël, Sándor Jenei, Atilla Kereszt, Éva Kondorosi, Emanuele G. Biondi, Tatiana Timchenko, Benoît Alunni, Peter Mergaert
Software Mentions: 1
Published: about 5 years ago

10.1177/2048872617746850

A single centre prospective cohort study addressing the effect of a rule-in/rule-out troponin algorithm on routine clinical practice
Cited by: 11
Author(s): Jack Marjot, Thomas E Kaier, Katherine Henderson, Laura Hunter, Michael Marber, Divaka Perera
Software Mentions: 1
Published: almost 9 years ago

10.3389/fonc.2020.522332

Integrated Analysis Reveals ENDOU as a Biomarker in Head and Neck Squamous Cell Carcinoma Progression
Cited by: 5
Author(s): Changshui Xu, Yunbin Zhang, Yimin Shen, Yong Shi, Ming Zhang, Liang Zhou
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-39620-5

Levels of Systemic Low-grade Inflammation in Pregnant Mothers and Their Offspring are Correlated
Cited by: 33
Author(s): Nadia R. Fink, Bo Chawes, Klaus Bønnelykke, Jonathan Thorsen, Jakob Stokholm, Morten Arendt Rasmussen, Susanne Brix, Hans Bisgaard
Software Mentions: 1
Published: over 7 years ago

10.3389/fmicb.2021.683266

RNA-Based Analysis Reveals High Diversity of Plant-Associated Active Fungi in the Atmosphere
Cited by: 1
Author(s): Yan Chen, Xishen Zhu, Ziqiong Hou, Yi Wang, Zhou Yang, Ling Wang, Lin Liu, Jingrong Duan, Sauban Musa Jibril, Chengyun Li
Software Mentions: 1
Published: about 5 years ago

10.1128/mSphere.00075-15

A Novel Glycolipid Biosurfactant Confers Grazing Resistance upon Pantoea ananatis BRT175 against the Social Amoeba Dictyostelium discoideum
Cited by: 21
Author(s): Derek D. N. Smith, Arvin Nickzad, Éric Déziel, John Stavrinides
Software Mentions: 1
Published: over 10 years ago

10.3390/proteomes7020016

The Proteome of Tetrasphaera elongata is adapted to Changing Conditions in Wastewater Treatment Plants
Cited by: 16
Author(s): Florian‐Alexander Herbst, Morten Simonsen Dueholm, Reinhard Wimmer, Per Halkjær Nielsen
Software Mentions: 1
Published: over 7 years ago

10.1038/s42003-018-0213-5

Multiple animal positioning system shows that socially-reared mice influence the social proximity of isolation-reared cagemates
Cited by: 22
Author(s): Nozomi Endo, Waka Ujita, M. Fujiwara, Hideaki Miyauchi, Hiroyuki Mishima, Yusuke Makino, Lisa Hashimoto, Hiroshi Ōyama, Manabu Makinodan, Mayumi Nishi, Chiharu Tohyama, Masaki Kakeyama
Software Mentions: 1
Published: almost 8 years ago

10.3389/fmicb.2020.00376

Hiding in Plain Sight: The Globally Distributed Bacterial Candidate Phylum PAUC34f
Cited by: 3
Author(s): Michael L. Chen, Eric D. Becraft, Maria Pachiadaki, Julia Brown, Jessica K. Jarett, Josep M. Gasol, Nikolai V. Ravin, Duane P. Moser, Takuro Nunoura, Gerhard J. Herndl, Tanja Woyke, Ramunas Stepanauskas
Software Mentions: 1
Published: over 6 years ago

10.2196/24925

Short-Range Forecasting of COVID-19 During Early Onset at County, Health District, and State Geographic Levels Using Seven Methods: Comparative Forecasting Study
Cited by: 18
Author(s): Christopher J. Lynch, Ross Gore
Software Mentions: 1
Published: over 5 years ago

10.1155/2020/5285178

The Association of Extreme Tachycardia and Sustained Return of Spontaneous Circulation after Nontraumatic Out-of-Hospital Cardiac Arrest
Cited by: 0
Author(s): Dong Hoon Lee, Eugi Jung, You Hwan Jo, Joonghee Kim, Jae Hyuk Lee, Seung Min Park, Yu Jin Kim
Software Mentions: 1
Published: over 6 years ago

10.1128/mSphere.00213-17

Gene Acquisition by a Distinct Phyletic Group within Streptococcus pneumoniae Promotes Adhesion to the Ocular Epithelium
Cited by: 8
Author(s): Irena Antic, Maureen Stolzer, Han Lai, Evan Powell, Rory Eutsey, Rolando Cuevas, Xinyu Miao, Regis P. Kowalski, Robert M. Q. Shanks, Dannie Durand, N. Luisa Hiller
Software Mentions: 1
Published: about 9 years ago

10.1007/s10654-015-0010-0

Prevalence of refractive error in Europe: the European Eye Epidemiology (E3) Consortium
Cited by: 295
Author(s): Katie Williams, Virginie J M Verhoeven, Phillippa Cumberland, Geir Bertelsen, Christian Wolfram, Gabriëlle H.S. Buitendijk, Albert Hofman, Cornelia M. van Duijn, Johannes R. Vingerling, Robert W A M Kuijpers, René Höhn, Alireza Mirshahi, Anthony P. Khawaja, Robert Luben, Maja Gran Erke, Therese von Hanno, Omar A. Mahroo, Ruth Hogg, Christian Gieger, Audrey Cougnard‐Grégoire, Eleftherios Anastasopoulos, Alain M. Bron, Jean François Dartigues, J.-F. Korobelnik, Catherine Creuzot‐Garcher, Fotis Topouzis, Cécile Delcourt, Jugnoo S Rahi, Thomas Meitinger, Astrid Fletcher, Paul J. Foster, Norbert Pfeiffer, Caroline C.W. Klaver, Christopher J. Hammond
Software Mentions: 1
Published: over 11 years ago

10.1093/gigascience/giab004

FASTQuick: rapid and comprehensive quality assessment of raw sequence reads
Cited by: 0
Author(s): Fan Zhang, Hyun Min Kang
Software Mentions: 1
Published: over 5 years ago

10.7554/eLife.54542

Regulation of stem/progenitor cell maintenance by BMP5 in prostate homeostasis and cancer initiation
Cited by: 18
Author(s): Mathieu Tremblay, Sophie Viala, Maxwell Er Shafer, Adda-Lee Graham-Paquin, Chloe Liu, Maxime Bouchard
Software Mentions: 1
Published: about 6 years ago

10.1002/cre2.233

Neutral zone recording in computer‐guided implant prosthesis: A new digital neuromuscular approach
Cited by: 4
Author(s): Massimo Frascaria, Davide Pietropaoli, Matteo Casinelli, R Cattaneo, Eleonora Ortu, Annalisa Monaco
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-019-41455-z

Acoustic recordings provide detailed information regarding the behavior of cryptic wildlife to support conservation translocations
Cited by: 4
Author(s): Xiao Qing Yan, Hemin Zhang, Desheng Li, Daifu Wu, Shuiqin Zhou, Min Sun, Haiping Hu, Xiaoqiang Liu, Shijie Mou, Shengshan He, Megan A. Owen, Yan Huang
Software Mentions: 1
Published: over 7 years ago

10.1083/jcb.202104093

Signal strength controls the rate of polarization within CTLs during killing
Cited by: 15
Author(s): Gordon L. Frazer, Christian Gawden-Bone, Nele M. G. Dieckmann, Yukako Asano, Gillian M. Griffiths
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2017.01380

Amplicon Sequencing of the slpH Locus Permits Culture-Independent Strain Typing of Lactobacillus helveticus in Dairy Products
Cited by: 8
Author(s): Aline Moser, Daniel Wüthrich, Rémy Bruggmann, Elisabeth Eugster‐Meier, Léo Meile, Stefan Irmler
Software Mentions: 1
Published: over 9 years ago

10.1007/s10198-015-0720-y

Economic evaluation in chronic pain: a systematic review and de novo flexible economic model
Cited by: 19
Author(s): W. Sullivan, Matthew Hirst, Stephen Beard, D. Gladwell, Francis Fagnani, Julio López Bastida, Ceri Phillips, W. Dunlop
Software Mentions: 1
Published: about 11 years ago

10.3389/fpsyg.2018.01692

Articulation and Dynamics Influence the Perceptual Attack Time of Saxophone Sounds
Cited by: 4
Author(s): Toni Bechtold, Olivier Senn
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0249739

The effects of maturity matched and un-matched opposition on physical performance and spatial exploration behavior during youth basketball matches
Cited by: 7
Author(s): Jorge Arede, Sean P. Cumming, David M. Johnson, Nuno Leite
Software Mentions: 1
Published: over 5 years ago

10.7554/eLife.64674

Propensity for somatic expansion increases over the course of life in Huntington disease
Cited by: 28
Author(s): Radhia Kacher, François‐Xavier Lejeune, Sandrine Noël, Cécile Cazeneuve, Alexis Brice, Sandrine Humbert, Alexandra Dürr
Software Mentions: 1
Published: over 5 years ago

10.1111/1758-2229.12736

Consistency in microbiomes in cultures of Alexandrium species isolated from brackish and marine waters
Cited by: 13
Author(s): Eva Sörenson, Mireia Bertos‐Fortis, Hanna Farnelid, Anke Kremp, Karen Krüger, Elin Lindehoff, Catherine Legrand
Software Mentions: 1
Published: over 7 years ago

10.1128/mSphereDirect.00027-19

Antibody Biomarkers Associated with Sterile Protection Induced by Controlled Human Malaria Infection under Chloroquine Prophylaxis
Cited by: 24
Author(s): Joshua M. Obiero, Joseph J. Campo, Anja Scholzen, Arlo Randall, Else M. Bijker, Meta Roestenberg, Cornelus C. Hermsen, Andy Teng, Aarti Jain, D. Huw Davies, Robert W. Sauerwein, Philip L. Felgner
Software Mentions: 1
Published: over 7 years ago

10.2196/27824

Informing Patients With Esophagogastric Cancer About Treatment Outcomes by Using a Web-Based Tool and Training: Development and Evaluation Study
Cited by: 6
Author(s): Loïs F van de Water, Héctor G. van den Boorn, Florian Hoxha, Inge Henselmans, Mart M Calff, Mirjam A. G. Sprangers, Ameen Abu‐Hanna, Ellen M. A. Smets
Software Mentions: 1
Published: about 5 years ago

10.1186/s13148-020-00869-7

CTCF loss mediates unique DNA hypermethylation landscapes in human cancers
Cited by: 26
Author(s): Nathan Damaschke, Joseph Gawdzik, Mele Avilla, Bing Yang, John Svaren, Avtar Roopra, Jianhua Luo, Yan Yu, Sündüz Keleş, David F. Jarrard
Software Mentions: 1
Published: over 6 years ago

10.1172/jci.insight.136533

Humoral immune responses mediate the development of a restrictive phenotype of chronic lung allograft dysfunction
Cited by: 13
Author(s): Keizo Misumi, David Wheeler, Yoshiro Aoki, M.P. Combs, Russell R. Braeuer, Ryuji Higashikubo, Wenjun Li, Daniel Kreisel, Ragini Vittal, Jeffrey L. Myers, Amir Lagstein, Neff Walker, Carol Farver, Vibha N. Lama
Software Mentions: 1
Published: almost 6 years ago

10.1098/rsos.150358

Differential responses of coral larvae to the colour of ambient light guide them to suitable settlement microhabitat
Cited by: 42
Author(s): Marie E. Strader, Sarah W. Davies, Mikhail V. Matz
Software Mentions: 1
Published: about 11 years ago

10.1186/s13073-019-0706-y

Genomic surveillance for hypervirulence and multi-drug resistance in invasive Klebsiella pneumoniae from South and Southeast Asia
Cited by: 150
Author(s): Kelly L. Wyres, To Nguyen Thi Nguyen, Margaret M C Lam, Louise M. Judd, Nguyễn Văn Vĩnh Châu, David A. B. Dance, Margaret Ip, Abhilasha Karkey, Clare Ling, Thyl Miliya, Paul N. Newton, Nguyen Phu Huong Lan, Amphone Sengduangphachanh, Paul Turner, Balaji Veeraraghavan, Phat Voong Vinh, Manivanh Vongsouvath, Nicholas R. Thomson, Stephen Baker, Kathryn E. Holt
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0195433

Effects of different slipping methods on the mortality of sardine, Sardina pilchardus, after purse-seine capture off the Portuguese Southern coast (Algarve)
Cited by: 16
Author(s): Ana Marçalo, Pedro M. Guerreiro, Luís Bentes, Mafalda Rangel, Pedro Monteiro, Frederico Oliveira, Carlos M.L. Afonso, Pedro Pousão-Ferreira, Hugues P. Benoît, Mike Breen, Karim Erzini, Jorge M. S. Gonçalves
Software Mentions: 1
Published: over 8 years ago

10.1128/mSphere.00506-19

Recovirus NS1-2 Has Viroporin Activity That Induces Aberrant Cellular Calcium Signaling To Facilitate Virus Replication
Cited by: 16
Author(s): Alicia C. Strtak, Jacob L. Perry, Mark N. Sharp, Alexandra L. Chang‐Graham, Tibor Farkas, Joseph M. Hyser
Software Mentions: 1
Published: almost 7 years ago

10.3389/fgene.2021.665555

Identification of a Competing Endogenous RNA Network Related to Immune Signature in Lung Adenocarcinoma
Cited by: 2
Author(s): Ting Zhu, Yongjun Yu, Jun Li, Kewei Ren
Software Mentions: 1
Published: over 5 years ago

10.1128/mSphere.00334-19

Validating DNA Extraction Protocols for Bentonite Clay
Cited by: 11
Author(s): Katja Engel, Sara Coyotzi, Melody A. Vachon, Jennifer McKelvie, Josh D. Neufeld
Software Mentions: 1
Published: almost 7 years ago

10.1128/mSphere.00601-19

Stability of Microbial Community Profiles Associated with Compacted Bentonite from the Grimsel Underground Research Laboratory
Cited by: 8
Author(s): Katja Engel, Sian E. Ford, Sara Coyotzi, Jennifer McKelvie, Nikitas Diomidis, G. F. Slater, Josh D. Neufeld
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-019-42673-1

Barley yield formation under abiotic stress depends on the interplay between flowering time genes and environmental cues
Cited by: 64
Author(s): Mathias Wiegmann, Andreas Maurer, Anh Van Pham, Timothy J. March, Ayed Al‐Abdallat, William Thomas, Hazel Bull, Mohammed Shahid, J. Eglinton, Michaël Baum, Andrew J. Flavell, Mark Tester, Klaus Pillen
Software Mentions: 1
Published: over 7 years ago

10.2196/15597

Analysis of Collective Human Intelligence for Diagnosis of Pigmented Skin Lesions Harnessed by Gamification Via a Web-Based Training Platform: Simulation Reader Study
Cited by: 11
Author(s): Claus Rinner, Harald Kittler, Cliff Rosendahl, Philipp Tschandl
Software Mentions: 1
Published: almost 7 years ago

10.3389/fgene.2021.693936

Genome-Wide Identification and Characterization of the Potato IQD Family During Development and Stress
Cited by: 9
Author(s): Chao Mei, Yuwei Liu, Xue Dong, Qianna Song, Huijie Wang, Hongwei Shi, Feng Rui-yun
Software Mentions: 1
Published: over 5 years ago

10.3389/fgene.2017.00166

Evidence Suggesting Absence of Mitochondrial DNA Methylation
Cited by: 109
Author(s): Mie Mechta, Lars R. Ingerslev, Odile Fabre, Martin Picard, Romain Barrès
Software Mentions: 1
Published: almost 9 years ago

10.3389/fpsyg.2019.01089

Measuring Distribution Similarities Between Samples: A Distribution-Free Overlapping Index
Cited by: 137
Author(s): Massimiliano Pastore, Antonio Calcagnì
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-019-42882-8

On resolving ambiguities in microbial community analysis of partial nitritation anammox reactors
Cited by: 26
Author(s): Laura Orschler, Shelesh Agrawal, Susanne Lackner
Software Mentions: 1
Published: over 7 years ago

10.1098/rspb.2018.2025

The history, genome and biology of NCTC 30: a non-pandemic Vibrio cholerae isolate from World War One
Cited by: 14
Author(s): Matthew J. Dorman, Leanne Kane, Daryl Domman, Jake D. Turnbull, Claire Cormie, Mohammed-Abbas Fazal, David Goulding, Julie E. Russell, Sarah Alexander, Nicholas R. Thomson
Software Mentions: 1
Published: over 7 years ago

10.1186/s13073-018-0587-5

Tracking key virulence loci encoding aerobactin and salmochelin siderophore synthesis in Klebsiella pneumoniae
Cited by: 129
Author(s): Margaret M C Lam, Kelly L. Wyres, Louise M. Judd, Ryan R. Wick, Adam Jenney, Sylvain Brisse, Kathryn E. Holt
Software Mentions: 1
Published: almost 8 years ago

10.1186/s13073-018-0585-7

Genotype effects contribute to variation in longitudinal methylome patterns in older people
Cited by: 36
Author(s): Qian Zhang, Riccardo E. Marioni, Matthew R. Robinson, Jonathan Higham, Duncan Sproul, Naomi R. Wray, Ian J. Deary, Allan F. McRae, Peter M. Visscher
Software Mentions: 1
Published: about 8 years ago

10.3389/fmicb.2020.01615

Origin and Evolution of H1N1/pdm2009: A Codon Usage Perspective
Cited by: 7
Author(s): Fucheng Guo, Jian Yang, Junbin Pan, Xianghui Liang, Xuejuan Shen, David M. Irwin, Ruiai Chen, Yongyi Shen
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0203503

Chronic fatigue syndrome patients have alterations in their oral microbiome composition and function
Cited by: 7
Author(s): Taiwu Wang, Li Yu, Cong Xu, Keli Pan, Minglu Mo, Mingxiang Duan, Yao Zhang, Hongyan Xiong
Software Mentions: 1
Published: about 8 years ago

10.1038/s41598-019-43919-8

Food knowledge depends upon the integrity of both sensory and functional properties: a VBM, TBSS and DTI tractography study
Cited by: 8
Author(s): Miriam Vignando, Marilena Aiello, Adriana Rinaldi, Tatiana Cattarruzza, Giulia Mazzon, Paolo Manganotti, Roberto Eleopra, Raffaella I. Rumiati
Software Mentions: 1
Published: over 7 years ago

10.1038/s41437-020-0322-z

Recent introgression between Taiga Bean Goose and Tundra Bean Goose results in a largely homogeneous landscape of genetic differentiation
Cited by: 11
Author(s): Jente Ottenburghs, Johanna Honka, Gerard Müskens, Hans Ellegren
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-019-43641-5

Enhanced metastatic potential in the MB49 urothelial carcinoma model
Cited by: 7
Author(s): Yuru Liu, Peng-Nien Yin, Christopher Silvers, Yi-Fen Lee
Software Mentions: 1
Published: over 7 years ago

10.1155/2021/3336770

TLR3 Serves as a Prognostic Biomarker and Associates with Immune Infiltration in the Renal Clear Cell Carcinoma Microenvironment
Cited by: 5
Author(s): Guodong Liao, Jia Lv, Alin Ji, Shuai Meng, Chao Chen
Software Mentions: 1
Published: about 5 years ago

10.18632/oncotarget.10418

In-depth proteomic profiling of the uveal melanoma secretome
Cited by: 43
Author(s): Martina Angi, Helen Kalirai, Samuel Prendergast, Deborah M. Simpson, Dean E. Hammond, Michele C. Madigan, Robert J. Beynon, Sarah E. Coupland
Software Mentions: 1
Published: over 10 years ago

10.1042/CS20210198

Glycoursodeoxycholic acid ameliorates diet-induced metabolic disorders with inhibiting endoplasmic reticulum stress
Cited by: 10
Author(s): Lele Cheng, Tao Chen, Manyun Guo, Peining Liu, Xiangrui Qiao, Yuanyuan Wei, Jianqing She, Bolin Li, Wen Xi, Juan Zhou, Zuyi Yuan, Yue Wu, Junhui Liu
Software Mentions: 1
Published: over 5 years ago

10.1007/s00259-019-04305-8

Cross-interaction of tau PET tracers with monoamine oxidase B: evidence from in silico modelling and in vivo imaging
Cited by: 65
Author(s): N. Murugan, Konstantinos Chiotis, Elena Rodriguez‐Vieitez, Laëtitia Lemoine, Hans Ågren, Agneta Nordberg
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0188085

Steps to achieve quantitative measurements of microRNA using two step droplet digital PCR
Cited by: 26
Author(s): Elizabeth Stein, David L. Duewer, Natalia Farkas, Erica L. Romsos, Lili Wang, Kenneth D. Cole
Software Mentions: 1
Published: almost 9 years ago

10.1186/s13148-021-01075-9

Epigenome-wide association study of level and change in cognitive abilities from midlife through late life
Cited by: 0
Author(s): Ida Karlsson, Malin Ericsson, Yunzhang Wang, Juulia Jylhävä, Sara Hägg, Anna K. Dahl Aslan, Chandra A. Reynolds, Nancy L. Pedersen
Software Mentions: 1
Published: over 5 years ago

10.1128/mSphere.00090-20

Restricted Sequence Variation in Streptococcus pyogenes Penicillin Binding Proteins
Cited by: 16
Author(s): Andrew Hayes, Jake A. Lacey, Jacqueline M Morris, Mark R. Davies, Steven Y. C. Tong
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms22189964

Fractionated Irradiation of Right Thorax Induces Abscopal Damage on Bone Marrow Cells via TNF-α and SAA
Cited by: 6
Author(s): Yimeng Song, Songling Hu, Junling Zhang, Lin Zhu, Xiaomin Zhao, Qianping Chen, Jianghong Zhang, Yang Bai, Yan Pan, Chunlin Shao
Software Mentions: 1
Published: about 5 years ago

10.7554/eLife.32822

Sci-Hub provides access to nearly all scholarly literature
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Author(s): Daniel S. Himmelstein, Ariel Rodriguez Romero, Jacob Levernier, Thomas A. Munro, Stephen Reid McLaughlin, Bastian Greshake Tzovaras, Casey S. Greene
Software Mentions: 1
Published: over 8 years ago

10.3389/fgene.2019.00261

Accuracy of Gene Expression Prediction From Genotype Data With PrediXcan Varies Across and Within Continental Populations
Cited by: 32
Author(s): Anna V. Mikhaylova, Timothy A. Thornton
Software Mentions: 1
Published: over 7 years ago

10.3389/fmicb.2016.01185

The First Temporal and Spatial Assessment of Vibrio Diversity of the Surrounding Seawater of Coral Reefs in Ishigaki, Japan
Cited by: 26
Author(s): Arshia Amin, Feng Gao, Nurhidayu Al‐saari, Pedro Milet Meirelles, Yasushi Yamazaki, Sayaka Mino, Fabiano L. Thompson, Toko Sawabe, Tomoo Sawabe
Software Mentions: 1
Published: about 10 years ago

10.2196/15406

Artificial Intelligence Technologies for Coping with Alarm Fatigue in Hospital Environments Because of Sensory Overload: Algorithm Development and Validation
Cited by: 19
Author(s): Chrystinne Oliveira Fernandes, Simon Miles, Carlos José Pereira de Lucena, Donald Cowan
Software Mentions: 1
Published: almost 7 years ago

10.1038/s42003-021-01655-8

Hallmarks of primary neurulation are conserved in the zebrafish forebrain
Cited by: 7
Author(s): Jonathan M. Werner, Maraki Y. Negesse, Dominique L. Brooks, Allyson R. Caldwell, Jafira M. Johnson, Rachel Brewster
Software Mentions: 1
Published: over 5 years ago

10.1038/s42003-020-1002-5

Single platelet variability governs population sensitivity and initiates intrinsic heterotypic responses
Cited by: 7
Author(s): Maaike S. A. Jongen, Ben D. MacArthur, Nicola A. Englyst, Jonathan West
Software Mentions: 1
Published: over 6 years ago

10.1161/CIRCINTERVENTIONS.115.002988

Quantification of the Effect of Pressure Wire Drift on the Diagnostic Performance of Fractional Flow Reserve, Instantaneous Wave-Free Ratio, and Whole-Cycle Pd/Pa
Cited by: 42
Author(s): Christopher Cook, Yousif Ahmad, Matthew Shun-Shin, Sukhjinder Nijjer, Ricardo Petraco, Rasha Al‐Lamee, Jamil Mayet, Dárrel P. Francis, Sayan Sen, Justin E. Davies
Software Mentions: 1
Published: over 10 years ago

10.1161/CIRCGENETICS.115.001302

Metabolic Characterization of a Rare Genetic Variation Within APOC3 and Its Lipoprotein Lipase–Independent Effects
Cited by: 27
Author(s): Fotios Drenos, George Davey Smith, Mika Ala‐Korpela, Johannes Kettunen, Peter Würtz, Pasi Soininen, Antti J. Kangas, Caroline Dale, Debbie A. Lawlor, Tom R. Gaunt, Juan-Pablo Casas, Nicholas J. Timpson
Software Mentions: 1
Published: over 10 years ago

10.1038/s41598-020-67228-7

Analyzing trend and forecasting of rainfall changes in India using non-parametrical and machine learning approaches
Cited by: 183
Author(s): Bushra Praveen, Swapan Talukdar, . Shahfahad, Susanta Mahato, Jayanta Mondal, Pritee Sharma, Abu Reza Md. Towfiqul Islam, Atiqur Rahman
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0069202

Genome-Wide Association Mapping for Identification of Quantitative Trait Loci for Rectal Temperature during Heat Stress in Holstein Cattle
Cited by: 86
Author(s): Serdal Dikmen, J.B. Cole, D.J. Null, Peter J. Hansen
Software Mentions: 1
Published: over 13 years ago

10.1038/s41598-020-67224-x

The speed of FtsZ treadmilling is tightly regulated by membrane binding
Cited by: 10
Author(s): Daniela A. García‐Soriano, Tamara Heermann, Ana Raso, Germán Rivas, Petra Schwille
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-020-67158-4

Climate drives intraspecific differentiation in the expression of growth-defence trade-offs in a long-lived pine species
Cited by: 17
Author(s): Carla Vázquez‐González, Luís Sampedro, Vicente Rozas, Rafael Zas
Software Mentions: 1
Published: over 6 years ago

10.1007/s11060-018-2867-8

Prognostic relevance of mutations and copy number alterations assessed with targeted next generation sequencing in IDH mutant grade II glioma
Cited by: 22
Author(s): Maarten M.J. Wijnenga, Pim J. French, Hendrikus J. Dubbink, Winand N.M. Dinjens, Peggy N. Atmodimedjo, Johan M. Kros, Ruth Fleischeuer, Clemens Dirven, Arnaud Vincent, Martin J. van den Bent
Software Mentions: 1
Published: over 8 years ago

10.1186/s13020-021-00488-1

Herbal formula Huangqi Guizhi Wuwu decoction attenuates paclitaxel-related neurotoxicity via inhibition of inflammation and oxidative stress
Cited by: 11
Author(s): Zhangming Lv, Jiayun Shen, Xuejiao Gao, Yonglan Ruan, Jinying Ling, Rongwei Sun, Jingya Dai, Haizhen Fan, Xiaolan Cheng, Peng Cao
Software Mentions: 1
Published: about 5 years ago

10.1186/s40880-017-0225-4

Exploring the potential confounder of nitrogen fertilizers in the relationship between pesticide exposures and risk of leukemia: a Poisson regression with two-way fixed-effects analysis
Cited by: 2
Author(s): Keith Fluegge, Keith Fluegge
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-018-31047-8

Analyses of ovarian activity reveal repeated evolution of post-reproductive lifespans in toothed whales
Cited by: 58
Author(s): Stephen Ellis, Daniel W. Franks, Stuart Nattrass, Thomas E. Currie, Michael A. Cant, D. K. Giles, Kenneth C. Balcomb, Darren P. Croft
Software Mentions: 1
Published: about 8 years ago

10.1038/s41598-020-67563-9

Immunosuppressive properties of cytochalasin B-induced membrane vesicles of mesenchymal stem cells: comparing with extracellular vesicles derived from mesenchymal stem cells
Cited by: 31
Author(s): Marina O. Gomzikova, Alexander Aimaletdinov, Oksana V. Bondar, И. Г. Старостина, Natalya Gorshkova, Olga Neustroeva, Sevindzh K. Kletukhina, Sirina V. Kurbangaleeva, V. V. Vorobev, Ekaterina Garanina, Jenny L. Persson, Jennie N. Jeyapalan, Nigel P. Mongan, Svetlana Khaiboullina, Albert A. Rizvanov
Software Mentions: 1
Published: over 6 years ago

10.3390/children8080675

Under-Vaccination in Pediatric Liver Transplant Candidates with Acute and Chronic Liver Disease—A Retrospective Observational Study of the European Reference Network TransplantChild
Cited by: 5
Author(s): Tobias Laue, Zeynep Demir, Dominique Debray, Mara Cananzi, Paola Gaio, Valeria Casotti, Lorenzo D’Antiga, Vaidotas Urbonas, Ulrich Baumann
Software Mentions: 1
Published: about 5 years ago

10.7554/eLife.41279

Synthetic and genomic regulatory elements reveal aspects of cis-regulatory grammar in mouse embryonic stem cells
Cited by: 50
Author(s): Dana King, Clarice Kit Yee Hong, James Shepherdson, David M Granas, Brett Maricque, Barak A. Cohen
Software Mentions: 1
Published: over 6 years ago

10.7554/eLife.62648

Distinct clonal evolution of B-cells in HIV controllers with neutralizing antibody breadth
Cited by: 10
Author(s): Deniz Cizmeci, Giuseppe Lofano, Evan Rossignol, Anne‐Sophie Dugast, Dongkyoon Kim, Guy Cavet, Ngan Thi Kim Nguyen, Yann Chong Tan, Michael S. Seaman, Galit Alter, Boris Jülg
Software Mentions: 1
Published: over 5 years ago

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