cran: ggplot2 | Projects | Ecosyste.ms: Papers

10.1371/journal.pone.0189271

Transcriptional profiling of sugarcane leaves and roots under progressive osmotic stress reveals a regulated coordination of gene expression in a spatiotemporal manner
Cited by: 25
Author(s): Alejandro Pereira-Santana, Edyciel J. Alvarado-Robledo, Jesús Alejandro Zamora‐Briseño, Jorge Tonatiuh Ayala-Sumuano, Víctor M. González-Mendoza, Francisco Espadas-Gil, Luis David Alcaraz, Enrique Castaño, Miguel A. Keb-Llanes, Lorenzo Felipe Sánchez Teyer, Luis Carlos Rodríguez-Zapata
Software Mentions: 1
Published: almost 9 years ago

10.1186/s12915-019-0724-7

Unlocking the origins and biology of domestic animals using ancient DNA and paleogenomics
Cited by: 43
Author(s): Gillian P. McHugo, Michael J. Dover, David E. MacHugh
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0251562

Locomotor illusions are generated by perceptual body-environment organization
Cited by: 1
Author(s): Martin Dobricki, David Weibel, Leonardo Angelini, Elena Mugellini, Fred W. Mast
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0196051

Complications and risk management in the use of the reaming-irrigator-aspirator (RIA) system: RIA is a safe and reliable method in harvesting autologous bone graft
Cited by: 27
Author(s): Patrick Haubruck, Julian Ober, Raban Arved Heller, Matthias Miska, Gerhard Schmidmaier, Michael C. Tanner
Software Mentions: 1
Published: over 8 years ago

10.1186/s12915-020-0760-3

A metabolic switch regulates the transition between growth and diapause in C. elegans
Cited by: 46
Author(s): Sider Penkov, Bharath Kumar Raghuraman, Cihan Erkut, Jana Oertel, Roberta Galli, Eduardo Jacobo Miranda Ackerman, Daniela Vorkel, Jean‐Marc Verbavatz, Edmund Koch, Karim Fahmy, Andrej Shevchenko, Teymuras V. Kurzchalia
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0211544

Understanding the prevalence of bear part consumption in Cambodia: A comparison of specialised questioning techniques
Cited by: 25
Author(s): Elizabeth Davis, Brian Crudge, Thona Lim, D.A. O'Connor, Vichet Roth, Matt Hunt, Jenny Anne Glikman
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0032146

Human Platelet-Rich Plasma- and Extracellular Matrix-Derived Peptides Promote Impaired Cutaneous Wound Healing In Vivo
Cited by: 56
Author(s): Tatiana N. Demidova-Rice, Lindsey N. Wolf, Jeffry Deckenback, Michael R. Hamblin, Ira M. Herman
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0221200

Covariates of diarrhoea among under-five children in India: Are they level dependent?
Cited by: 8
Author(s): Mala Ramanathan, Bevin Vijayan
Software Mentions: 1
Published: about 7 years ago

10.3389/fpls.2021.641890

Presence of the Weakly Pathogenic Fusarium poae in the Fusarium Head Blight Disease Complex Hampers Biocontrol and Chemical Control of the Virulent Fusarium graminearum Pathogen
Cited by: 16
Author(s): Junjun Tan, Noémie De Zutter, Sarah De Saeger, Marthe De Boevre, Trang Minh Tran, Théo van der Lee, C. Waalwijk, Anne Willems, Peter Vandamme, Maarten Ameye, Kris Audenaert
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0239492

Evaluation of pooled sample analysis strategy in expediting case detection in areas with emerging outbreaks of COVID-19: A pilot study
Cited by: 15
Author(s): Anirudh Singh, Ram Kumar Nema, Ankur Joshi, Prem Shankar, Shashwati Nema, Arun Raghuwanshi, Chitra Patankar, Bijina J. Mathew, Arti Shrivas, Ritu Pandey, Ranu Tripathi, Debasis Biswas, Sarman Singh
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0214013

Zooplankters’ nightmare: The fast and efficient catching basket of larval phantom midges (Diptera: Chaoborus)
Cited by: 11
Author(s): Sebastian Kruppert, Lisa Deussen, Linda C. Weiss, Martin Horstmann, Jonas Wolff, Thomas Kleinteich, Stanislav N. Gorb, Ralph Tollrian
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0187933

Relationship between fine particulate matter, weather condition and daily non-accidental mortality in Shanghai, China: A Bayesian approach
Cited by: 22
Author(s): Xin Fang, Bo Fang, Chunfang Wang, Tian Xia, Matteo Bottai, Fang Fang, Yang Cao
Software Mentions: 1
Published: almost 9 years ago

10.1186/s12915-021-01085-2

An economical and highly adaptable optogenetics system for individual and population-level manipulation of Caenorhabditis elegans
Cited by: 1
Author(s): Mandy Koopman, Leen Janssen, Ellen A. A. Nollen
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0239613

Associations between individual variations in visual attention at 9 months and behavioral competencies at 18 months in rural Malawi
Cited by: 3
Author(s): Juha Pyykkö, Per Ashorn, Eletina Chilora, Kenneth Maleta, Per Ashorn, Jukka Leppänen
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0236489

Incubating parents serve as visual cues to predators in Kentish plover (Charadrius alexandrinus)
Cited by: 6
Author(s): Noémie Engel, Zsolt Végvári, Romy Rice, Vojtěch Kubelka, Tamás Székely
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0088419

Bayesian Model Comparison and Parameter Inference in Systems Biology Using Nested Sampling
Cited by: 38
Author(s): Nick Pullen, Richard J. Morris
Software Mentions: 1
Published: over 12 years ago

10.3389/fpls.2018.01399

The Phytogeographic History of Common Walnut in China
Cited by: 32
Author(s): Xiaojia Feng, Huijuan Zhou, Saman Zulfiqar, Xiang Luo, Yiheng Hu, Li Feng, Maria Emilia Malvolti, Keith Woeste, Peng Zhao
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0101685

Genetic Variation in DNA Repair Pathways and Risk of Non-Hodgkin's Lymphoma
Cited by: 20
Author(s): Justin Rendleman, Yevgeniy Antipin, Boris Reva, Christina Adaniel, Jennifer A. Przybylo, Ana Dutra-Clarke, Nichole Hansen, Adriana Heguy, Kety Huberman, Laetitia Borsu, Ora Paltiel, Dina Ben‐Yehuda, Jennifer R. Brown, Arnold S. Freedman, Chris Sander, Andrew D. Zelenetz, Robert J. Klein, Yongzhao Shao, Mortimer J. Lacher, Joseph Vijai, Kenneth Offit, Tomas Kirchhoff
Software Mentions: 1
Published: over 12 years ago

10.3389/fpls.2017.00372

In silico MCMV Silencing Concludes Potential Host-Derived miRNAs in Maize
Cited by: 18
Author(s): Muhammad Shahzad Iqbal, Basit Jabbar, Muhammad Nauman Sharif, Qurban Ali, Tayyab Husnain, Idrees Ahmad Nasir
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0208829

Complex spatio-temporal distribution and genomic ancestry of mitochondrial DNA haplogroups in 24,216 Danes
Cited by: 5
Author(s): Jonas Bybjerg‐Grauholm, Christian Munch Hagen, Vanessa F. Gonçalves, Marie Bækvad‐Hansen, Christine Hansen, Paula L. Hedley, Jørgen K. Kanters, Jimmi Nielsen, Michael Theisen, Ole Mors, James L. Kennedy, Thomas Damm Als, Alfonso Buil Demur, Merete Nordentoft, Anders D. Børglum, Preben Bo Mortensen, Thomas Werge, David M. Hougaard, Michael Christiansen
Software Mentions: 1
Published: almost 8 years ago

10.3389/fpls.2021.649204

Growing in Mixed Stands Increased Leaf Photosynthesis and Physiological Stress Resistance in Moso Bamboo and Mature Chinese Fir Plantations
Cited by: 7
Author(s): Chunju Peng, Song YanDong, Chong Li, Tingting Mei, Zhen Wu, Yongjun Shi, Yongqiang Zhou, Guomo Zhou
Software Mentions: 1
Published: over 5 years ago

10.1186/s12859-018-2170-x

EqualTDRL: illustrating equivalent tandem duplication random loss rearrangements
Cited by: 7
Author(s): Tom Hartmann, Matthias Bernt, Martin Middendorf
Software Mentions: 1
Published: over 8 years ago

10.3389/fpls.2019.01265

Phytochemical and Ecological Analysis of Two Varieties of Hemp (Cannabis sativa L.) Grown in a Mountain Environment of Italian Alps
Cited by: 84
Author(s): Radmila Pavlović, Sara Panseri, Luca Giupponi, Valeria Leoni, Cinzia Citti, Chiara Cattaneo, Maria Cavaletto, Annamaria Giorgi
Software Mentions: 1
Published: about 7 years ago

10.3389/fpls.2021.700273

Bioformulation of Silk-Based Coating to Preserve and Deliver Rhizobium tropici to Phaseolus vulgaris Under Saline Environments
Cited by: 5
Author(s): Manal Mhada, Augustine T. Zvinavashe, Zakaria Hazzoumi, Youssef Zeroual, Benedetto Marelli, Lamfeddal Kouisni
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0146538

Knowledge of Bovine Tuberculosis, Cattle Husbandry and Dairy Practices amongst Pastoralists and Small-Scale Dairy Farmers in Cameroon
Cited by: 38
Author(s): Robert F. Kelly, Saidou M. Hamman, K. L. Morgan, Egbe Franklyn Nkongho, Victor Ngu Ngwa, Vincent N. Tanya, Walters N. Andu, Melissa Sander, Lucy Ndip, Ian Handel, Stella Mazeri, Adrian Muwonge, Barend M. deC. Bronsvoort
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0099782

Human Coronaviruses Associated with Upper Respiratory Tract Infections in Three Rural Areas of Ghana
Cited by: 63
Author(s): Michael Owusu, Augustina Annan, Victor M. Corman, Richard Larbi, Priscilla Anti, Jan Felix Drexler, Olivia Agbenyega, Yaw Adu‐Sarkodie, Christian Drosten
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0098076

Genome-Wide Analysis of Cold Adaptation in Indigenous Siberian Populations
Cited by: 119
Author(s): Alexia Cardona, Luca Pagani, Tiago Antão, Daniel J. Lawson, Christina A. Eichstaedt, Bryndís Yngvadóttir, Ma Than Than Shwe, Joseph Wee, Irene Gallego Romero, Srilakshmi M. Raj, Mait Metspalu, Richard Villems, Eske Willerslev, Chris Tyler‐Smith, B. A. Malyarchuk, Miroslava Derenko, Toomas Kivisild
Software Mentions: 1
Published: over 12 years ago

10.3389/fpls.2020.00094

Allometric Relationships for Predicting Aboveground Biomass and Sapwood Area of Oneseed Juniper (Juniperus monosperma) Trees
Cited by: 9
Author(s): Andrew M. Cunliffe, Cameron D. McIntire, Fabio Boschetti, Katherine J. Sauer, M. E. Litvak, Karen Anderson, Richard E. Brazier
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0205429

Tool making cockatoos adjust the lengths but not the widths of their tools to function
Cited by: 14
Author(s): Alice M. I. Auersperg, Celeste de Kock, Mark O’Hara, Ludwig Huber
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0179172

Trends in food insecurity for adults with cardiometabolic disease in the United States: 2005-2012
Cited by: 96
Author(s): Seth A. Berkowitz, Theodore S Z Berkowitz, James B. Meigs, Deborah J. Wexler
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0257583

Racial and ethnic disparities in HIV diagnoses among heterosexually active persons in the United States nationally and by state, 2018
Cited by: 4
Author(s): Erika G. Martin, Bahareh Ansari, Rachel Hart-Malloy, Dawn K. Smith, Kevin P. Delaney, Thomas L. Gift, Andrés A. Berruti, Monica Trigg, Eli S. Rosenberg
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0247783

Transcriptome analysis of the role of autophagy in plant response to heat stress
Cited by: 4
Author(s): Yan Zhang, Haoxuan Min, Chengchen Shi, Xia Gao, Zhibing Lai
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0230141

Design of composite measure schemes for comparative severity assessment in animal-based neuroscience research: A case study focussed on rat epilepsy models
Cited by: 15
Author(s): Roelof Maarten van Dijk, Ines Koska, André Bleich, René Tolba, Isabel Seiffert, Christina Möller, Valentina Di Liberto, Steven R. Talbot, Heidrun Potschka
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0041162

FAST-SeqS: A Simple and Efficient Method for the Detection of Aneuploidy by Massively Parallel Sequencing
Cited by: 62
Author(s): Isaac Kinde, Nickolas Papadopoulos, Kenneth W. Kinzler, Bert Vogelstein
Software Mentions: 1
Published: over 14 years ago

10.3389/fpls.2017.01586

Genome-Wide Association Study of Septoria tritici Blotch Resistance in Ethiopian Durum Wheat Landraces
Cited by: 43
Author(s): Yosef Gebrehawaryat Kidane, Bogale Nigir Hailemariam, Deȷene K. Mengistu, Carlo Fadda, Mario Enrico Pè, Matteo Dell’Acqua
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0167876

Susceptibility and Antibody Response of the Laboratory Model Zebra Finch (Taeniopygia guttata) to West Nile Virus
Cited by: 11
Author(s): Erik K. Hofmeister, Melissa Lund, Valerie I. Shearn-Bochsler, Christopher N. Balakrishnan
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pone.0153009

Sphingosine-1-Phosphate Lyase Deficient Cells as a Tool to Study Protein Lipid Interactions
Cited by: 36
Author(s): Mathias J. Gerl, Verena Bittl, Susanne Kirchner, Timo Sachsenheimer, Hanna L. Brunner, Christian Lüchtenborg, Cagakan Özbalci, Hannah Wiedemann, Sabine Wegehingel, Walter Nickel, Per Haberkant, Carsten Schultz, Marcus Krüger, Britta Brügger
Software Mentions: 1
Published: over 10 years ago

10.3389/fpls.2021.707839

QTL Map of Early- and Late-Stage Perennial Regrowth in Zea diploperennis
Cited by: 4
Author(s): Kyle W. Swentowsky, Harrison S. Bell, David M. Wills, R. Kelly Dawe
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0115626

Reducing Uncertainty in the American Community Survey through Data-Driven Regionalization
Cited by: 61
Author(s): Seth E. Spielman, David C. Folch
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0080347

First Partial Skeleton of a 1.34-Million-Year-Old Paranthropus boisei from Bed II, Olduvai Gorge, Tanzania
Cited by: 135
Author(s): Manuel Domı́nguez-Rodrigo, Travis Rayne Pickering, Enrique Baquedano, Audax Mabulla, Darren F. Mark, Charles M. Musiba, Henry T. Bunn, David Uribelarrea, Vicki Smith, Fernando Diéz Martín, Alfredo Pérez‐González, Policarpo Sánchez, Manuel Santonja, Doris Barboni, Agness Gidna, Gail M. Ashley, José Yravedra, Jason L. Heaton, María Carmen Arriaza
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0177013

Leopard in a tea-cup: A study of leopard habitat-use and human-leopard interactions in north-eastern India
Cited by: 55
Author(s): Aritra Kshettry, Srinivas Vaidyanathan, Vidya Athreya
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0159086

How to Fairly Allocate Scarce Medical Resources: Ethical Argumentation under Scrutiny by Health Professionals and Lay People
Cited by: 46
Author(s): Pius Krütli, Thomas Rosemann, Kjell Törnblom, Timo Smieszek
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0085203

Aerodynamic Characteristics of a Feathered Dinosaur Measured Using Physical Models. Effects of Form on Static Stability and Control Effectiveness
Cited by: 20
Author(s): Dennis Evangelista, Cardona Griselda, Guenther-Gleason Eric, Tony L. Huynh, Austin Kwong, Marks Dylan, Neil Ray, Adrian Tisbe, Kyle Tse, M. A. R. Koehl
Software Mentions: 1
Published: almost 13 years ago

10.3389/fpsyg.2019.01089

Measuring Distribution Similarities Between Samples: A Distribution-Free Overlapping Index
Cited by: 137
Author(s): Massimiliano Pastore, Antonio Calcagnì
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0176296

Ex vivo cultures combined with vivo-morpholino induced gene knockdown provide a system to assess the role of WT1 and GATA4 during gonad differentiation
Cited by: 13
Author(s): Lucas J. Rudigier, Christof Dame, Holger Scholz, Karin M. Kirschner
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0190927

Localized zinc distribution in shark vertebrae suggests differential deposition during ontogeny and across vertebral structures
Cited by: 12
Author(s): Vincent Raoult, Nicholas R. Howell, David Zahra, Victor M. Peddemors, Daryl L. Howard, Martin D. de Jonge, Benjamin L. Buchan, Jane E. Williamson
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0112572

Metabolomic Analysis Using Ultra-Performance Liquid Chromatography-Quadrupole-Time of Flight Mass Spectrometry (UPLC-Q-TOF MS) Uncovers the Effects of Light Intensity and Temperature under Shading Treatments on the Metabolites in Tea
Cited by: 68
Author(s): Qunfeng Zhang, Yuanzhi Shi, Lei Ma, Xiaoyun Yi, Jianyun Ruan
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0170647

Increased Gamma Brainwave Amplitude Compared to Control in Three Different Meditation Traditions
Cited by: 99
Author(s): Claire Braboszcz, B. Rael Cahn, Jonathan Lévy, M. Fernàndez, Arnaud Delorme
Software Mentions: 1
Published: almost 10 years ago

10.1016/j.pscychresns.2019.111019

Alcohol consumption is associated with reduced creatine levels in the hippocampus of older adults
Cited by: 4
Author(s): Naiara Demnitz, Anya Topiwala, Enikő Zsoldos, Charlotte J. Stagg, Uzay E. Emir, Heidi Johansen‐Berg, Klaus P. Ebmeier, Claire E. Sexton
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0237178

Entanglement rates and haulout abundance trends of Steller (Eumetopias jubatus) and California (Zalophus californianus) sea lions on the north coast of Washington state
Cited by: 6
Author(s): Elizabeth Marina Allyn, Jonathan J. Scordino
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0159518

High Hospitalization Rates in Survivors of Childhood Cancer: A Longitudinal Follow-Up Study Using Medical Record Linkage
Cited by: 23
Author(s): Elske Sieswerda, Anna Font-Gonzalez, Johannes B. Reitsma, Marcel G. W. Dijkgraaf, Richard C. Heinen, Monique W. M. Jaspers, Helena J. van der Pal, Flora E. van Leeuwen, Huib N. Caron, Ronald B. Geskus, Leontien C. M. Kremer
Software Mentions: 1
Published: over 10 years ago

10.3389/fpsyg.2018.01692

Articulation and Dynamics Influence the Perceptual Attack Time of Saxophone Sounds
Cited by: 4
Author(s): Toni Bechtold, Olivier Senn
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0139663

Genomic Landscape of Primary Mediastinal B-Cell Lymphoma Cell Lines
Cited by: 17
Author(s): Haiping Dai, Stefan Ehrentraut, Stefan Nagel, Sonja Eberth, Claudia Pommerenke, Wilhelm G. Dirks, Robert Geffers, Srilaxmi Kalavalapalli, Maren Kaufmann, Corrina Meyer, Silke Faehnrich, Suning Chen, Hans G. Drexler, Roderick A.F. MacLeod
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0089428

Increased Prolactin Levels Are Associated with Impaired Processing Speed in Subjects with Early Psychosis
Cited by: 32
Author(s): Itziar Montalvo, Alfonso Gutiérrez-Zotes, Marta Creus, Rosa Monseny, Laura Ortega, J. Franch, Stephen M. Lawrie, Rebecca M. Reynolds, Elisabet Vilella, Javier Labad
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0137640

Deciphering Seed Sequence Based Off-Target Effects in a Large-Scale RNAi Reporter Screen for E-Cadherin Expression
Cited by: 8
Author(s): Robert A. Adams, Barbara Nicke, Hans‐Dieter Pohlenz, Florian Sohler
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0155143

Impaired Bile Acid Homeostasis in Children with Severe Acute Malnutrition
Cited by: 18
Author(s): Ling Zhang, Wieger Voskuijl, Marialena Mouzaki, Albert K. Groen, J. J. Alexander, Céline Bourdon, Alice Wang, Christian J. Versloot, Valeria Di Giovanni, Ronald J. A. Wanders, Robert Bandsma
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0192117

The number of repeated observations needed to estimate the habitual physical activity of an individual to a given level of precision
Cited by: 25
Author(s): Patrick Bergman
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0192277

Distribution of triclosan-resistant genes in major pathogenic microorganisms revealed by metagenome and genome-wide analysis
Cited by: 14
Author(s): Raees Khan, Nazish Roy, Kihyuck Choi, Seon-Woo Lee
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0156147

Near-Bottom Hypoxia Impacts Dynamics of Bacterioplankton Assemblage throughout Water Column of the Gulf of Finland (Baltic Sea)
Cited by: 8
Author(s): Peeter Laas, Elina Šatova, Inga Lips, Urmas Lips, Jaak Simm, Veljo Kisand, Madis Metsis
Software Mentions: 1
Published: over 10 years ago

10.1186/s12859-016-1250-z

GeneSCF: a real-time based functional enrichment tool with support for multiple organisms
Cited by: 78
Author(s): Santhilal Subhash, Chandrasekhar Kanduri
Software Mentions: 1
Published: about 10 years ago

10.1017/S0033291717000836

Adolescent friendships predict later resilient functioning across psychosocial domains in a healthy community cohort
Cited by: 147
Author(s): A.-L. van Harmelen, Rogier A. Kievit, Konstantinos Ioannidis, Sharon Neufeld, Peter Jones, Edward T. Bullmore, Raymond J. Dolan, Peter Fonagy, Ian Goodyer
Software Mentions: 1
Published: over 9 years ago

10.1186/s12859-021-04324-z

LLAMA: a robust and scalable machine learning pipeline for analysis of large scale 4D microscopy data: analysis of cell ruffles and filopodia
Cited by: 1
Author(s): James G. Lefevre, Yvette W. H. Koh, Adam A. Wall, Nicholas D. Condon, Jennifer L. Stow, Nicholas A. Hamilton
Software Mentions: 1
Published: about 5 years ago

10.3389/fpsyg.2021.642641

Not Too Much and Not Too Little: Information Processing for a Good Purchase Decision
Cited by: 5
Author(s): Claudia Vogrincic-Haselbacher, Joachim I. Krueger, Brigitta Lurger, Isabelle Dinslaken, Julian Anslinger, Florian Caks, Arnd Florack, Hilmar Brohmer, Ursula Athenstaedt
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0185972

Assessing climate change-robustness of protected area management plans—The case of Germany
Cited by: 6
Author(s): Juliane Geyer, Stefan Kreft, Florian Jeltsch, Pierre L. Ibisch
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0156926

Universal HbA1c Measurement in Early Pregnancy to Detect Type 2 Diabetes Reduces Ethnic Disparities in Antenatal Diabetes Screening: A Population-Based Observational Study
Cited by: 13
Author(s): Ruth Hughes, Jonathan Williman, Joanna Gullam
Software Mentions: 1
Published: over 10 years ago

10.1186/s12859-015-0477-4

BACA: bubble chArt to compare annotations
Cited by: 16
Author(s): Vittorio Fortino, Harri Alenius, Dario Greco
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0186433

Integrated mRNA and microRNA transcriptome analyses reveal regulation of thermal acclimation in Gymnocypris przewalskii: A case study in Tibetan Schizothoracine fish
Cited by: 14
Author(s): Cunfang Zhang, Chao Tong, Fei Tian, Kai Zhao
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pcbi.1008119

Ten simple rules to increase computational skills among biologists with Code Clubs
Cited by: 5
Author(s): Ada K. Hagan, Nicholas A. Lesniak, Marcy J. Balunas, Lucas Bishop, William L. Close, Matthew K. Doherty, Amanda G. Elmore, Kaitlin J. Flynn, Geoffrey D. Hannigan, Charlie C. Koumpouras, Matthew L. Jenior, Ariangela J. Kozik, Kathryn McBride, Samara Rifkin, Joshua M. A. Stough, Kelly L Sovacool, Marc A. Sze, Sarah Tomkovich, Begüm D. Topçuoğlu, Patrick D. Schloss
Software Mentions: 1
Published: about 6 years ago

10.1186/s12859-017-1955-7

Exploration of charge states of balanol analogues acting as ATP-competitive inhibitors in kinases
Cited by: 9
Author(s): Ari Hardianto, Muhammad Yusuf, Fei Liu, Shoba Ranganathan
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pcbi.1006468

Wrangling distributed computing for high-throughput environmental science: An introduction to HTCondor
Cited by: 10
Author(s): Richard A. Erickson, Michael N. Fienen, S. Grace McCalla, Emily L. Weiser, Melvin L. Bower, Jonathan M. Knudson, Greg Thain
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pcbi.1003638

Are Current Atomistic Force Fields Accurate Enough to Study Proteins in Crowded Environments?
Cited by: 117
Author(s): Dražen Petrov, Bojan Žagrović
Software Mentions: 1
Published: over 12 years ago

10.3389/fpubh.2020.567621

Epidemiological and Genomic Analysis of SARS-CoV-2 in 10 Patients From a Mid-Sized City Outside of Hubei, China in the Early Phase of the COVID-19 Outbreak
Cited by: 3
Author(s): Jinkun Chen, Evann E. Hilt, Fan Li, Huan Wu, Zhuojing Jiang, ZHANG Qinchao, Jiling Wang, Yifang Wang, Ziqin Li, Jialiang Tang, Shangxin Yang
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pcbi.1006360

ggsashimi: Sashimi plot revised for browser- and annotation-independent splicing visualization
Cited by: 137
Author(s): Diego Garrido-Martín, Emilio Palumbo, Roderic Guigó, Alessandra Breschi
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pcbi.1004890

A Crowdsourcing Approach to Developing and Assessing Prediction Algorithms for AML Prognosis
Cited by: 29
Author(s): David Noren, Byron L. Long, Raquel Norel, Kahn Rrhissorrakrai, Kenneth R. Hess, Chenyue W. Hu, Alex Bisberg, André Schultz, Erik Engquist, Li Liu, Xihui Lin, Gregory M. Chen, Honglei Xie, Geoffrey A. M. Hunter, Paul C. Boutros, О. А. Степанов, Thea Norman, Stephen H. Friend, Gustavo Stolovitzky, Steven M. Kornblau, Amina A. Qutub
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pcbi.1006991

Neurogranin stimulates Ca2+/calmodulin-dependent kinase II by suppressing calcineurin activity at specific calcium spike frequencies
Cited by: 16
Author(s): Lu Li, Massimo Lai, S P Cole, Nicolas Le Novère, Stuart J. Edelstein
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pcbi.1004723

Evolutionary Genomics Suggests That CheV Is an Additional Adaptor for Accommodating Specific Chemoreceptors within the Chemotaxis Signaling Complex
Cited by: 33
Author(s): Davi R. Ortega, Igor B. Zhulin
Software Mentions: 1
Published: over 10 years ago

10.3389/fspor.2020.00106

Dietary Adjustments to Altitude Training in Elite Endurance Athletes; Impact of a Randomized Clinical Trial With Antioxidant-Rich Foods
Cited by: 1
Author(s): Anu Koivisto-Mørk, Ingvild Paur, Gøran Paulsen, Ina Garthe, Truls Raastad, Nasser E. Bastani, Rune Blomhoff, Siv Kjølsrud Bøhn
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pcbi.1006099

Biogeography and environmental conditions shape bacteriophage-bacteria networks across the human microbiome
Cited by: 33
Author(s): Geoffrey D. Hannigan, Melissa B. Duhaime, Danai Koutra, Patrick D. Schloss
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pbio.2007044

CRISPR screening using an expanded toolkit of autophagy reporters identifies TMEM41B as a novel autophagy factor
Cited by: 103
Author(s): Christopher J. Shoemaker, T.Q. Huang, N. Weir, Nicole J. Polyakov, Sebastian W. Schultz, Vladimir Denic
Software Mentions: 1
Published: over 7 years ago

10.1186/s12859-021-04034-6

PnB Designer: a web application to design prime and base editor guide RNAs for animals and plants
Cited by: 180
Author(s): Sebastian M. Siegner, Mehmet E. Karasu, Markus S. Schröder, Zacharias Kontarakis, Jacob E. Corn
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pbio.3000632

A widespread family of heat-resistant obscure (Hero) proteins protect against protein instability and aggregation
Cited by: 44
Author(s): Kaoru Tsuboyama, Tatsuya Osaki, Eriko Matsuura-Suzuki, Hiroko Kozuka‐Hata, Yuki Okada, Masaaki Oyama, Yoshiho Ikeuchi, Shigeo Iwasaki, Yukihide Tomari
Software Mentions: 1
Published: over 6 years ago

10.3389/fsurg.2017.00040

Fertility Preservation in Endometriosis Patients: Anti-Müllerian Hormone Is a Reliable Marker of the Ovarian Follicle Density
Cited by: 23
Author(s): Elisabetta Garavaglia, Cinzia Sala, Gianluca Taccagni, Michela Traglia, Caterina Barbieri, Stefano Ferrari, Massimo Candiani, Paola Panina-Bordignon, Daniela Toniolo
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pbio.1002555

Phosphorylation of Def Regulates Nucleolar p53 Turnover and Cell Cycle Progression through Def Recruitment of Calpain3
Cited by: 29
Author(s): Yihong Guan, Delai Huang, Feng Chen, Ce Gao, Ting Tao, Hui Shi, Shanshan Zhao, Zuyuan Liao, Li Jan Lo, Yingchun Wang, Jun Chen, Jinrong Peng
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pbio.2005189

Tissue-specific degradation of essential centrosome components reveals distinct microtubule populations at microtubule organizing centers
Cited by: 58
Author(s): Maria D. Sallee, Jennifer C. Zonka, Taylor D. Skokan, Brian Raftrey, Jessica L. Feldman
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pbio.1002452

Functional Sites Induce Long-Range Evolutionary Constraints in Enzymes
Cited by: 92
Author(s): Benjamin R. Jack, Austin G. Meyer, Julián Echave, Claus O. Wilke
Software Mentions: 1
Published: over 10 years ago

10.3399/bjgpopen18X101622

Family practitioners' top medical priorities when managing patients with multimorbidity: a cross-sectional study
Cited by: 6
Author(s): Lilli Herzig, Yolanda Müeller, Dagmar M. Haller, Andreas Zeller, Stefan Neuner-Jehle, Anouk Déruaz‐Luyet, Christine Cohidon, Sven Streit, Bernard Burnand, Jean-Christophe Zuchuat
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pbio.3000650

A pedagogical approach to science outreach
Cited by: 7
Author(s): Marni B. McClure, Kacey C. Hall, Erin F. Brooks, Catherine T. Allen, Kenneth S. Lyle
Software Mentions: 1
Published: over 6 years ago

10.1089/ast.2016.1615

Replication of Simulated Prebiotic Amphiphilic Vesicles in a Finite Environment Exhibits Complex Behavior That Includes High Progeny Variability and Competition
Cited by: 7
Author(s): Don Armstrong, Doron Lancet, Raphael Zidovetzki
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pbio.3000429

The intragenus and interspecies quorum-sensing autoinducers exert distinct control over Vibrio cholerae biofilm formation and dispersal
Cited by: 62
Author(s): Andrew A. Bridges, Bonnie L. Bassler
Software Mentions: 1
Published: almost 7 years ago

10.3390/plants10081739

Context-Dependent Effects of Trichoderma Seed Inoculation on Anthracnose Disease and Seed Yield of Bean (Phaseolus vulgaris): Ambient Conditions Override Cultivar-Specific Differences
Cited by: 2
Author(s): Karina Gutiérrez-Moreno, Michelina Ruocco, Maurilia M. Monti, Octavio Martı́nez de la Vega, Martin Heil
Software Mentions: 1
Published: about 5 years ago

10.3390/plants10020189

Relative Telomere Length and Telomerase Reverse Transcriptase (TERT) Expression Are Associated with Age in Almond (Prunus dulcis [Mill.] D.A.Webb)
Cited by: 4
Author(s): Katherine M. D’Amico-Willman, Elizabeth S. Anderson, Thomas M. Gradziel, Jonathan Fresnedo-Ramírez
Software Mentions: 1
Published: almost 6 years ago

10.3390/plants9030373

Effects of Rhizome Integration on the Water Physiology of Phyllostachys edulis Clones Under Heterogeneous Water Stress
Cited by: 4
Author(s): Jing Xiong, Chunju Cai, Shaohui Fan, Guanglu Liu, Changming Wang, Benxue Chen
Software Mentions: 1
Published: over 6 years ago

10.3390/plants10040816

Broomrape Species Parasitizing Odontarrhena lesbiaca (Brassicaceae) Individuals Act as Nickel Hyperaccumulators
Cited by: 7
Author(s): Panayiotis G. Dimitrakopoulos, Maria Aloupi, Georgios Tetradis, George C. Adamidis
Software Mentions: 1
Published: over 5 years ago

10.3389/fvets.2021.735345

Transmission Dynamics of Corynebacterium spp. Within Two Danish Dairy Cattle Herds
Cited by: 2
Author(s): Carsten Kirkeby, Tariq Hisham Beshara Halasa, Michael Farre, Galal Nazih Chehabi, Kaare Græsbøll
Software Mentions: 1
Published: about 5 years ago

10.3390/plants10040680

Floristic and Vegetation Changes on a Small Mediterranean Island over the Last Century
Cited by: 6
Author(s): Saverio Sciandrello, Salvatore Cambria, Gianpietro Giusso del Galdo, Riccardo Guarino, Pietro Minissale, Salvatore Pasta, Gianmarco Tavilla, A Cristaudo
Software Mentions: 1
Published: over 5 years ago

10.3390/plants9060772

Cucumber Fruit Size and Shape Variations Explored from the Aspects of Morphology, Histology, and Endogenous Hormones
Cited by: 28
Author(s): Huan Liu, Yupeng Pan, Ce Liu, Yuanyuan Ding, Xiao Wang, Zhihui Cheng, Huanwen Meng
Software Mentions: 1
Published: over 6 years ago

10.3390/plants10071380

Disparate Dynamics of Gene Body and cis-Regulatory Element Evolution Illustrated for the Senescence-Associated Cysteine Protease Gene SAG12 of Plants
Cited by: 7
Author(s): Emil Vatov, Uwe Ludewig, Ulrike Zentgraf
Software Mentions: 1
Published: over 5 years ago

10.3390/plants8090338

SWEET Gene Family in Medicago truncatula: Genome-Wide Identification, Expression and Substrate Specificity Analysis
Cited by: 22
Author(s): Bin Hu, Hao Wu, Weifeng Huang, Jianbo Song, Yong Zhou, Yongjun Lin
Software Mentions: 1
Published: about 7 years ago

10.1007/s00402-020-03691-1

Recommendations for return to sports after total hip arthroplasty are becoming less restrictive as implants improve
Cited by: 16
Author(s): Tu-Lan Vu-Han, Sebastian Hardt, R. Ascherl, Clemens Gwinner, Carsten Perka
Software Mentions: 1
Published: almost 6 years ago

10.3390/plants9111624

Advancements in Low-Chill Blueberry Vaccinium corymbosum L. Tissue Culture Practices
Cited by: 8
Author(s): Francesco Cappai, Alexandria Garcia, Ryan Cullen, Matthew Davis, Patricio Muńoz
Software Mentions: 1
Published: almost 6 years ago

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