cran: ggplot2 | Projects | Ecosyste.ms: Papers

10.1186/s12896-019-0558-y

Standardized mounting method of (zebrafish) embryos using a 3D-printed stamp for high-content, semi-automated confocal imaging
Cited by: 9
Author(s): David Simon Kleinhans, Virginie Lecaudey
Software Mentions: 1
Published: over 6 years ago

10.3390/cancers11040511

LC/MS-Based Polar Metabolite Profiling Identified Unique Biomarker Signatures for Cervical Cancer and Cervical Intraepithelial Neoplasia Using Global and Targeted Metabolomics
Cited by: 31
Author(s): Imran Khan, Miso Nam, Minji Kwon, Seung‐Woo Seo, Sunhee Jung, Jiyou Han, Geum‐Sook Hwang, Mi Kyung Kim
Software Mentions: 1
Published: about 7 years ago

10.3390/cancers12010070

Integrated Analysis of Structural Variation and RNA Expression of FGFR2 and Its Splicing Modulator ESRP1 Highlight the ESRP1amp-FGFR2norm-FGFR2-IIIchigh Axis in Diffuse Gastric Cancer
Cited by: 12
Author(s): Sara Pinto Teles, Patrícia Oliveira, Marta Ferreira, Joana Carvalho, Pedro Ferreira, Carla Oliveíra
Software Mentions: 1
Published: over 6 years ago

10.3390/cancers12051080

YM155-Adapted Cancer Cell Lines Reveal Drug-Induced Heterogeneity and Enable the Identification of Biomarker Candidates for the Acquired Resistance Setting
Cited by: 4
Author(s): Martin Michaelis, Mark N. Wass, Ian Reddin, Yvonne Voges, Florian Rothweiler, Stephanie Hehlgans, Jaroslav Činátl, Marco Mernberger, Andrea Nist, Thorsten Stiewe, Franz Rödel, Jindřich Činátl
Software Mentions: 1
Published: about 6 years ago

10.3389/fonc.2020.00466

Circulating Tumor DNA Is Capable of Monitoring the Therapeutic Response and Resistance in Advanced Colorectal Cancer Patients Undergoing Combined Target and Chemotherapy
Cited by: 20
Author(s): Hua Cao, Xinyi Liu, Yixin Chen, Pan Chyr Yang, Tanxiao Huang, Lele Song, Rui‐hua Xu
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0247367

SARS-CoV-2 viral shedding characteristics and potential evidence for the priority for faecal specimen testing in diagnosis
Cited by: 18
Author(s): Yuan Chen, Hongling Wang, Kefeng Li, An Tang, Yongyu Dai, Bing Wu, Hui Zhang, Jiabei Chen, Jie-nan Liu, Wenjie Wu, GU Song-ye, Hai Wang, Haodi Xu, Mingyu Wu, Menglu Yu, Yuchao Wang, Xinwei Yu, J. He, Shelan Liu, Yongli Zhang, Zhendong Tong, Jianbo Yan
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0209742

Range overlap between the sword-billed hummingbird and its guild of long-flowered species: An approach to the study of a coevolutionary mosaic
Cited by: 11
Author(s): Florencia Soteras, Marcela Moré, Ana C. Ibañez, María del Rosario Iglesias, Andrea A. Cocucci
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0154949

Subsets of Visceral Adipose Tissue Nuclei with Distinct Levels of 5-Hydroxymethylcytosine
Cited by: 8
Author(s): Ping Yu, Lexiang Ji, Kevin J. Lee, Miao Yu, Chuan He, Suresh Ambati, Elizabeth C. McKinney, Crystal Lyles Jackson, Clifton A. Baile, Robert J. Schmitz, Richard B. Meagher
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0224664

Development of a quantitative PCR assay for the detection and enumeration of a potentially ciguatoxin-producing dinoflagellate, Gambierdiscus lapillus (Gonyaulacales, Dinophyceae)
Cited by: 15
Author(s): Anna Liza Kretzschmar, Arjun Verma, Gurjeet S. Kohli, Shauna A. Murray
Software Mentions: 1
Published: over 6 years ago

10.3389/fonc.2021.623964

Oxygen Deprivation Modulates EGFR and PD-L1 in Squamous Cell Carcinomas of the Head and Neck
Cited by: 4
Author(s): Sebastian Zahnreich, Senayit Gebrekidan, Gabriele Multhoff, Peter Vaupel, Heinz Schmidberger, Arnulf Mayer
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0103934

Improvement of Prediction Ability for Genomic Selection of Dairy Cattle by Including Dominance Effects
Cited by: 71
Author(s): Chuanyu Sun, P.M. VanRaden, J.B. Cole, Jeffrey R. O’Connell
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0237701

Evaluating the capacity of species distribution modeling to predict the geographic distribution of the mangrove community in Mexico
Cited by: 14
Author(s): Karla Rodríguez-Medina, Carlos Yáñez‐Arenas, A. Townsend Peterson, Jorge Euán Ávila, Jorge A. Herrera-Silveira
Software Mentions: 1
Published: almost 6 years ago

10.7554/eLife.59614

Ubiquitin-dependent regulation of a conserved DMRT protein controls sexually dimorphic synaptic connectivity and behavior
Cited by: 15
Author(s): Emily A. Bayer, Rebecca C. Stecky, Lauren B. Neal, Phinikoula S. Katsamba, Göran Ahlsén, Vishnu Balaji, Thorsten Hoppe, Lawrence Shapiro, Meital Oren‐Suissa, Oliver Hobert
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0235190

Two decades of little change: An analysis of U.S. medical school basic science faculty by sex, race/ethnicity, and academic rank
Cited by: 29
Author(s): Christopher L. Bennett, Raquel Y. Salinas, Joseph J. Locascio, Edward W. Boyer
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0069185

Identifying Issue Frames in Text
Cited by: 10
Author(s): Eyal Sagi, Daniel Diermeier, Stefan Kaufmann
Software Mentions: 1
Published: almost 13 years ago

10.18632/aging.101639

ZNF185 is a p53 target gene following DNA damage
Cited by: 9
Author(s): Artem Smirnov, Angela Cappello, Anna Maria Lena, Lucia Anemona, Alessandro Mauriello, Nicola Di Daniele, Margherita Annicchiarico-Petruzzelli, Gerry Melino, Eleonora Candi
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0254031

Anemia design effects in cluster surveys of women and young children in refugee settings
Cited by: 0
Author(s): Erin Hulland, Eva Leidman, Caroline Wilkinson, Mélody Tondeur, Oleg Bilukha
Software Mentions: 1
Published: almost 5 years ago

10.3389/fped.2021.691599

Immunotherapies for Anti-N-M-methyl-D-aspartate Receptor Encephalitis: Multicenter Retrospective Pediatric Cohort Study in China
Cited by: 5
Author(s): Shiqi Guang, Jianjun Ma, Xiaotun Ren, Shuizhen Zhou, Jian Yang, Jianzhao Zhang, Xiaoshuang Cao, Linxiu Zhong, Xiao Ding, Xiaosu Wang, Changhong Ren, Weihua Zhang, Linmei Zhang, Min Zhang, Jing Sun, Miriam Kessi, Fei Yin, Jing Peng, Yuwu Jiang
Software Mentions: 1
Published: almost 5 years ago

10.1186/s12896-018-0447-9

The importance of genotype identity, genetic heterogeneity, and bioinformatic handling for properly assessing genomic variation in transgenic plants
Cited by: 9
Author(s): Jean Michel Michno, Robert M. Stupar
Software Mentions: 1
Published: about 8 years ago

10.3389/fped.2020.587730

Carriage Dynamics of Pneumococcal Serotypes in Naturally Colonized Infants in a Rural African Setting During the First Year of Life
Cited by: 7
Author(s): Chrispin Chaguza, Madikay Senghore, Ebrima Bojang, Stephanie Lo, Chinelo Ebruke, Rebecca A. Gladstone, Peggy-Estelle Tientcheu, Rowan E Bancroft, Archibald Worwui, Ebenezer Foster-Nyarko, Fatima Ceesay, Catherine Okoi, Lesley McGee, Keith P. Klugman, Robert F. Breiman, Michael R. Barer, Richard A. Adegbola, Martín Antonio, Stephen D. Bentley, Brenda Kwambana-Adams
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0049406

A Generic Model to Simulate Air-Borne Diseases as a Function of Crop Architecture
Cited by: 13
Author(s): Pierre Casadebaig, Gauthier Quesnel, Michel Langlais, Robert Faivre
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0149035

Heterologous Expression Screens in Nicotiana benthamiana Identify a Candidate Effector of the Wheat Yellow Rust Pathogen that Associates with Processing Bodies
Cited by: 63
Author(s): Benjamin Pêtre, Diane G. O. Saunders, Jan Sklenář, Cécile Lorrain, Ksenia V. Krasileva, Joe Win, Sébastien Duplessis, Sophien Kamoun
Software Mentions: 1
Published: over 10 years ago

10.3389/fphar.2020.601344

Largely Accelerated Arterial Aging in Rheumatoid Arthritis Is Associated With Inflammatory Activity and Smoking in the Early Stage of the Disease
Cited by: 9
Author(s): Nikolett Mong, Z Tarjanyi, László Tóthfalusi, Andrea Bartykowszki, Anikó Ilona Nagy, Anett Szekely, Dávid Becker, Pál Maurovich-Horvat, Béla Merkely, György Nagy
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0178274

Reprimo tissue-specific expression pattern is conserved between zebrafish and human
Cited by: 9
Author(s): Ricardo J. Figueroa, Gonzalo Carrasco-Aviño, Ignacio A. Wichmann, Martin Lange, Gareth I. Owen, Arndt F. Siekmann, Alejandro Corvalán, Juan C. Opazo, Julio D. Amigo
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0053608

Taxonomic Classification of Bacterial 16S rRNA Genes Using Short Sequencing Reads: Evaluation of Effective Study Designs
Cited by: 266
Author(s): Orna Mizrahi-Man, Emily Davenport, Yoav Gilad
Software Mentions: 1
Published: over 13 years ago

10.3389/fphar.2020.00620

Software Tools for Model-Informed Precision Dosing: How Well Do They Satisfy the Needs?
Cited by: 58
Author(s): Wannee Kantasiripitak, Ruth Van Daele, Matthias Gijsen, Marc Ferrante, Isabel Spriet, Erwin Dreesen
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0232770

Colonization of Beauveria bassiana 08F04 in root-zone soil and its biocontrol of cereal cyst nematode (Heterodera filipjevi)
Cited by: 8
Author(s): Jie Zhang, Bo Fu, Qitong Lin, I. T. Riley, Shengli Ding, Linlin Chen, Jiangkuan Cui, Lirong Yang, Honglian Li
Software Mentions: 1
Published: about 6 years ago

10.3389/fphar.2019.00001

Pathway Based Analysis of Mutation Data Is Efficient for Scoring Target Cancer Drugs
Cited by: 93
Author(s): Marianna Zolotovskaia, Maxim Sorokin, Anna A. Emelianova, Nicolas Borisov, Denis Kuzmin, Pieter Borger, Andrew Garazha, Anton Buzdin
Software Mentions: 1
Published: over 7 years ago

10.3389/fphar.2020.00794

Individualized Dosing With High Inter-Occasion Variability Is Correctly Handled With Model-Informed Precision Dosing—Using Rifampicin as an Example
Cited by: 14
Author(s): Ulrika S. H. Simonsson, Ulrika S. H. Simonsson
Software Mentions: 1
Published: about 6 years ago

10.3389/fphar.2021.630003

A Computational Exploration of the Molecular Network Associated to Neuroinflammation in Alzheimer’s Disease
Cited by: 3
Author(s): Fatima El Idrissi, Bernard Gressier, David Devos, Karim Bélarbi
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.pone.0218943

Stable isotope and dental caries data reveal abrupt changes in subsistence economy in ancient China in response to global climate change
Cited by: 27
Author(s): Christina Cheung, Hua Zhang, Joseph C. Hepburn, Dongya Yang, Michael P. Richards
Software Mentions: 1
Published: almost 7 years ago

10.1186/s12915-020-00812-5

The evolutionarily conserved ESRE stress response network is activated by ROS and mitochondrial damage
Cited by: 14
Author(s): Elissa Tjahjono, Aidan P. McAnena, Natalia V. Kirienko
Software Mentions: 1
Published: almost 6 years ago

10.3389/fphar.2020.01036

Kuijieyuan Decoction Improved Intestinal Barrier Injury of Ulcerative Colitis by Affecting TLR4-Dependent PI3K/AKT/NF-κB Oxidative and Inflammatory Signaling and Gut Microbiota
Cited by: 69
Author(s): Baohai Liu, Xuehua Piao, Wei Niu, Qingyu Zhang, Chi Ma, Tong Wu, QiChang Gu, Tingfang Cui, Shuangdi Li
Software Mentions: 1
Published: almost 6 years ago

10.3389/fphar.2019.01508

Combined Use of Astragalus Polysaccharide and Berberine Attenuates Insulin Resistance in IR-HepG2 Cells via Regulation of the Gluconeogenesis Signaling Pathway
Cited by: 19
Author(s): Zhu Mao, Min Lin, Xin Zhang, Lu Ping Qin
Software Mentions: 1
Published: over 6 years ago

10.3389/fphar.2021.626766

A Review of the Dose Justification of Phase 3 Trials to Regulatory Authorities for Drugs Intended for the Treatment of Type 2 Diabetes in Europe
Cited by: 0
Author(s): Jeroen V. Koomen, Jasper Stevens, Margje H. Monster‐Simons, Hiddo J.L. Heerspink, Peter G. M. Mol
Software Mentions: 1
Published: about 5 years ago

10.3389/fphar.2021.693167

Suppression of Inflammatory Cardiac Cytokine Network in Rats with Untreated Obesity and Pre-Diabetes by AT2 Receptor Agonist NP-6A4
Cited by: 7
Author(s): Madhavi P. Gavini, Abuzar Mahmood, Anthony Belenchia, Paige Beauparlant, Sumit Kumar, Sivakumar Ardhanari, Vincent G. DeMarco, Lakshmi Pulakat
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.pone.0081663

Modulation of Malaria Infection in Anopheles gambiae Mosquitoes Exposed to Natural Midgut Bacteria
Cited by: 55
Author(s): Majoline T. Tchioffo, Anne Boissière, Thomas S. Churcher, Luc Abate, Geoffrey Gimonneau, Sandrine E. Nsango, Parfait Awono-Ambene, Richard Christen, Antoine Berry, Isabelle Morlais
Software Mentions: 1
Published: over 12 years ago

10.3389/fphar.2021.713197

Comprehensive Analysis of Fecal Microbiome and Metabolomics in Hepatic Fibrosis Rats Reveal Hepatoprotective Effects of Yinchen Wuling Powder From the Host-Microbial Metabolic Axis
Cited by: 5
Author(s): Yumeng Zhang, Min Zhao, Xue Jiang, Qiaoyu Qiao, Tingting Liu, Chunjie Zhao, Miao Wang
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.pone.0154457

Complementary Hand Responses Occur in Both Peri- and Extrapersonal Space
Cited by: 3
Author(s): Tim Faber, Michiel van Elk, Kai J. Jonas
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0237818

Genome-wide association study for mammary structure in Canadian Angus cows
Cited by: 7
Author(s): Kajal Devani, Graham Plastow, Karin Orsel, Tiago S. Valente
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0249739

The effects of maturity matched and un-matched opposition on physical performance and spatial exploration behavior during youth basketball matches
Cited by: 7
Author(s): Jorge Arede, Sean P. Cumming, David M. Johnson, Nuno Leite
Software Mentions: 1
Published: about 5 years ago

10.7554/eLife.05357

Dynamic subcellular localization of a respiratory complex controls bacterial respiration
Cited by: 25
Author(s): François Alberge, Léon Espinosa, Farida Seduk, Léa Sylvi, René Toci, Anne Walburger, Axel Magalon
Software Mentions: 1
Published: about 11 years ago

10.3389/fphys.2020.615025

Regulation of Peroxisome Proliferator-Activated Receptor Pathway During Torpor in the Garden Dormouse, Eliomys quercinus
Cited by: 3
Author(s): A. Watts, Samantha M. Logan, Anna Kübber‐Heiss, Annika Posautz, Gabrielle Stalder, Johanna Painer, Kristina Gasch, Sylvain Giroud, Kenneth B. Storey
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0195433

Effects of different slipping methods on the mortality of sardine, Sardina pilchardus, after purse-seine capture off the Portuguese Southern coast (Algarve)
Cited by: 16
Author(s): Ana Marçalo, Pedro M. Guerreiro, Luís Bentes, Mafalda Rangel, Pedro Monteiro, Frederico Oliveira, Carlos M.L. Afonso, Pedro Pousão-Ferreira, Hugues P. Benoît, Mike Breen, Karim Erzini, Jorge M. S. Gonçalves
Software Mentions: 1
Published: about 8 years ago

10.3389/fphys.2018.00878

A Mechanistic Computational Model Reveals That Plasticity of CD4+ T Cell Differentiation Is a Function of Cytokine Composition and Dosage
Cited by: 31
Author(s): Bhanwar Lal Puniya, Robert G. Todd, Akram Mohammed, Deborah M. Brown, Matteo Barberis, Tomáš Helikar
Software Mentions: 1
Published: almost 8 years ago

10.1186/s12915-021-01138-6

Single-cell analysis at the protein level delineates intracellular signaling dynamic during hematopoiesis
Cited by: 5
Author(s): Jinheng Wang, Chenggong Tu, Hui Zhang, Yongliang Huo, Eline Menu, Jinbao Liu
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.pone.0188085

Steps to achieve quantitative measurements of microRNA using two step droplet digital PCR
Cited by: 26
Author(s): Elizabeth Stein, David L. Duewer, Natalia Farkas, Erica L. Romsos, Lili Wang, Kenneth D. Cole
Software Mentions: 1
Published: over 8 years ago

10.7554/eLife.47155

Evolution of neuronal anatomy and circuitry in two highly divergent nematode species
Cited by: 49
Author(s): Ray L. Hong, Metta Riebesell, Daniel J. Bumbarger, Steven J. Cook, Heather R Carstensen, Tahmineh Sarpolaki, Luisa Cochella, Jessica Castrejon, Eduardo Moreno, Bogdan Sieriebriennikov, Oliver Hobert, Ralf J. Sommer
Software Mentions: 1
Published: over 6 years ago

10.3389/fphys.2021.663023

Transcriptomics Analysis and Re-sequencing Reveal the Mechanism Underlying the Thermotolerance of an Artificial Selection Population of the Pacific Oyster
Cited by: 7
Author(s): Yulong Tan, Rong Cong, Hongsheng Qi, Luping Wang, Guofan Zhang, Ying Pan, Li Li
Software Mentions: 1
Published: about 5 years ago

10.7554/eLife.05864

MorphoGraphX: A platform for quantifying morphogenesis in 4D
Cited by: 352
Author(s): Pierre Barbier de Reuille, Anne-Lise Routier-Kierzkowska, Daniel Kierzkowski, George W. Bassel, Thierry Schüpbach, Gerardo Tauriello, Namrata Bajpai, Soeren Strauss, Alain Weber, Annamária Kiss, Agata Burian, Hugo Hofhuis, Aleksandra Sapala, Marcin Lipowczan, Maria B. Heimlicher, Sarah Robinson, Emmanuelle Bayer, Konrad Basler, Petros Koumoutsakos, Adrienne Roeder, Tinri Aegerter-Wilmsen, Naomi Nakayama, Miltos Tsiantis, Angela Hay, Dorota Kwiatkowska, Ioannis Xénarios, Cris Kuhlemeier, Richard S. Smith
Software Mentions: 1
Published: about 11 years ago

10.3390/nu11051124

Dietary Egg Sphingomyelin Prevents Aortic Root Plaque Accumulation in Apolipoprotein-E Knockout Mice
Cited by: 18
Author(s): Courtney Millar, Gregory H Norris, A. Vitols, Christopher García, Samantha Seibel, Liya Anto, Christopher N. Blesso
Software Mentions: 1
Published: about 7 years ago

10.3389/fphys.2019.00572

Metformin Monotherapy Downregulates Diabetes-Associated Inflammatory Status and Impacts on Mortality
Cited by: 24
Author(s): Anteneh Mehari Tizazu, Ma Shwe Zin Nyunt, Olivier Cexus, Koolarina Suku, Esther Wing Hei Mok, Chin Hui Xian, Joni Chong, Crystal Tze Ying Tan, Wilson How, Sandra Hubert, Emilie Combet, Tamàs Fülöp, Tze Pin Ng, Anis Larbi
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pone.0069202

Genome-Wide Association Mapping for Identification of Quantitative Trait Loci for Rectal Temperature during Heat Stress in Holstein Cattle
Cited by: 86
Author(s): Serdal Dikmen, J.B. Cole, D.J. Null, Peter J. Hansen
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0209431

Evaluating the bio-economic performance of a Callo de hacha (Atrina maura, Atrina tuberculosa & Pinna rugosa) fishery restoration plan in La Paz, Mexico
Cited by: 4
Author(s): Juliano Palacios‐Abrantes, Juliana Herrera-Correal, Salvador Estrada, Jacy Brunkow, Renato Molina
Software Mentions: 1
Published: over 7 years ago

10.3389/fpls.2021.637190

Quantitative High-Throughput, Real-Time Bioassay for Plant Pathogen Growth in vivo
Cited by: 2
Author(s): Chunqiu Zhang, Ben N. Mansfeld, Ying-Zu Lin, Rebecca Grumet
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0177536

The Global Fund in China: Multidrug-resistant tuberculosis nationwide programmatic scale-up and challenges to transition to full country ownership
Cited by: 17
Author(s): Lixia Wang, Renzhong Li, Cheng Xu, Hui Zhang, Yunzhou Ruan, Ming-Ting Chen, Dongmei Wang, Emilio Dirlikov, Xin Du, Jian Zhao, Yanlin Zhao, Sheng Fen Wang, Yuhong Liu, Liang Li, Dennis Falzon, Yiyuan Sun, Yu Wang, Bernhard Schwärtlander, Fabio Scano
Software Mentions: 1
Published: almost 9 years ago

10.3389/fpls.2020.00643

Stomata and Sporophytes of the Model Moss Physcomitrium patens
Cited by: 10
Author(s): Robert S. Caine, Caspar Chater, Andrew J. Fleming, Julie E. Gray
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0251562

Locomotor illusions are generated by perceptual body-environment organization
Cited by: 1
Author(s): Martin Dobricki, David Weibel, Leonardo Angelini, Elena Mugellini, Fred W. Mast
Software Mentions: 1
Published: about 5 years ago

10.3389/fpls.2021.696229

Chromosome Level Assembly of Homozygous Inbred Line ‘Wongyo 3115’ Facilitates the Construction of a High-Density Linkage Map and Identification of QTLs Associated With Fruit Firmness in Octoploid Strawberry (Fragaria × ananassa)
Cited by: 10
Author(s): Hye-Eun Lee, Abinaya Manivannan, Sun Yi Lee, Koeun Han, Jun-Geol Yeum, Jinkwan Jo, Jinhee Kim, Il Rae Rho, Ye Rin Lee, Eun Su Lee, Byoung‐Cheorl Kang, Do-Sun Kim
Software Mentions: 1
Published: almost 5 years ago

10.18632/aging.202322

Identification of novel SNPs associated with coronary artery disease and birth weight using a pleiotropic cFDR method
Cited by: 1
Author(s): Xinrui Wu, Xu Lin, Qi Li, Zun Wang, Na Zhang, Mengyuan Tian, Xiaolei Wang, Hong‐Wen Deng, Hongzhuan Tan
Software Mentions: 1
Published: over 5 years ago

10.3389/fpls.2020.00387

Water Stable Isotopes in Ecohydrological Field Research: Comparison Between In Situ and Destructive Monitoring Methods to Determine Soil Water Isotopic Signatures
Cited by: 22
Author(s): Angelika Kübert, Sinikka Paulus, Adrian Dahlmann, Christiane Werner, Youri Rothfuss, Natalie Orlowski, Maren Dubbert
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0196051

Complications and risk management in the use of the reaming-irrigator-aspirator (RIA) system: RIA is a safe and reliable method in harvesting autologous bone graft
Cited by: 27
Author(s): Patrick Haubruck, Julian Ober, Raban Arved Heller, Matthias Miska, Gerhard Schmidmaier, Michael C. Tanner
Software Mentions: 1
Published: about 8 years ago

10.1186/s12915-019-0657-1

ImageJ SurfCut: a user-friendly pipeline for high-throughput extraction of cell contours from 3D image stacks
Cited by: 39
Author(s): Özer Erguvan, Marion Louveaux, Olivier Hamant, Stéphane Verger
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pone.0211544

Understanding the prevalence of bear part consumption in Cambodia: A comparison of specialised questioning techniques
Cited by: 25
Author(s): Elizabeth Davis, Brian Crudge, Thona Lim, D.A. O'Connor, Vichet Roth, Matt Hunt, Jenny Anne Glikman
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0032146

Human Platelet-Rich Plasma- and Extracellular Matrix-Derived Peptides Promote Impaired Cutaneous Wound Healing In Vivo
Cited by: 56
Author(s): Tatiana N. Demidova-Rice, Lindsey N. Wolf, Jeffry Deckenback, Michael R. Hamblin, Ira M. Herman
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0221200

Covariates of diarrhoea among under-five children in India: Are they level dependent?
Cited by: 8
Author(s): Mala Ramanathan, Bevin Vijayan
Software Mentions: 1
Published: almost 7 years ago

10.3389/fpls.2020.00601

Soil Sickness in Aged Tea Plantation Is Associated With a Shift in Microbial Communities as a Result of Plant Polyphenol Accumulation in the Tea Gardens
Cited by: 47
Author(s): Yasir Arafat, Israr Ud Din, Muhammad Tayyab, Yuhang Jiang, Ting Cui, Zhaoying Cai, Hao Zhao, Xiangmin Lin, Wenxiong Lin, Shan Lin
Software Mentions: 1
Published: about 6 years ago

10.1186/s12915-019-0724-7

Unlocking the origins and biology of domestic animals using ancient DNA and paleogenomics
Cited by: 43
Author(s): Gillian P. McHugo, Michael J. Dover, David E. MacHugh
Software Mentions: 1
Published: over 6 years ago

10.7554/eLife.47460

A distinct cardiopharyngeal mesoderm genetic hierarchy establishes antero-posterior patterning of esophagus striated muscle
Cited by: 17
Author(s): Glenda Comai, Églantine Heude, Sébastien Mella, Sylvain Paisant, Francesca Pala, Mirialys Gallardo, Francina Langa, Gabrielle Kardon, Swetha Gopalakrishnan, Shahragim Tajbakhsh
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0239492

Evaluation of pooled sample analysis strategy in expediting case detection in areas with emerging outbreaks of COVID-19: A pilot study
Cited by: 15
Author(s): Anirudh Singh, Ram Kumar Nema, Ankur Joshi, Prem Shankar, Shashwati Nema, Arun Raghuwanshi, Chitra Patankar, Bijina J. Mathew, Arti Shrivas, Ritu Pandey, Ranu Tripathi, Debasis Biswas, Sarman Singh
Software Mentions: 1
Published: over 5 years ago

10.3389/fpls.2020.609600

Regulation of Exocyst Function in Pollen Tube Growth by Phosphorylation of Exocyst Subunit EXO70C2
Cited by: 4
Author(s): Antonietta Saccomanno, Martin Potocký, Přemysl Pejchar, Michal Hála, Hiromasa Shikata, Claus Schwechheimer, Viktor Žárský
Software Mentions: 1
Published: over 5 years ago

10.3389/fpls.2020.00239

Root Skewing-Associated Genes Impact the Spaceflight Response of Arabidopsis thaliana
Cited by: 25
Author(s): Brandon Califar, Natasha Sng, Agata K. Zupanska, Anna‐Lisa Paul, Robert J. Ferl
Software Mentions: 1
Published: over 6 years ago

10.1186/s12915-020-0760-3

A metabolic switch regulates the transition between growth and diapause in C. elegans
Cited by: 46
Author(s): Sider Penkov, Bharath Kumar Raghuraman, Cihan Erkut, Jana Oertel, Roberta Galli, Eduardo Jacobo Miranda Ackerman, Daniela Vorkel, Jean‐Marc Verbavatz, Edmund Koch, Karim Fahmy, Andrej Shevchenko, Teymuras V. Kurzchalia
Software Mentions: 1
Published: about 6 years ago

10.3389/fpls.2016.01071

Salt Induces Features of a Dormancy-Like State in Seeds of Eutrema (Thellungiella) salsugineum, a Halophytic Relative of Arabidopsis
Cited by: 15
Author(s): Yana Kazachkova, Asif Ali Khan, Tania Acuña, Isabel López‐Díaz, Esther Carrera, Inna Khozin‐Goldberg, Aaron Fait, Simon Barak
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pone.0214013

Zooplankters’ nightmare: The fast and efficient catching basket of larval phantom midges (Diptera: Chaoborus)
Cited by: 11
Author(s): Sebastian Kruppert, Lisa Deussen, Linda C. Weiss, Martin Horstmann, Jonas Wolff, Thomas Kleinteich, Stanislav N. Gorb, Ralph Tollrian
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pone.0187933

Relationship between fine particulate matter, weather condition and daily non-accidental mortality in Shanghai, China: A Bayesian approach
Cited by: 22
Author(s): Xin Fang, Bo Fang, Chunfang Wang, Tian Xia, Matteo Bottai, Fang Fang, Yang Cao
Software Mentions: 1
Published: over 8 years ago

10.3389/fpls.2016.00804

Natural Allelic Variations in Highly Polyploidy Saccharum Complex
Cited by: 24
Author(s): Song Jiang, Xiping Yang, Marcio F. R. Resende, Leandro G. Neves, James Todd, Jisen Zhang, Jack C. Comstock, Jianping Wang
Software Mentions: 1
Published: about 10 years ago

10.1186/s12915-021-01085-2

An economical and highly adaptable optogenetics system for individual and population-level manipulation of Caenorhabditis elegans
Cited by: 1
Author(s): Mandy Koopman, Leen Janssen, Ellen A. A. Nollen
Software Mentions: 1
Published: almost 5 years ago

10.7554/eLife.65487

Inverse regulation of Vibrio cholerae biofilm dispersal by polyamine signals
Cited by: 18
Author(s): Andrew A. Bridges, Bonnie L. Bassler
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0239613

Associations between individual variations in visual attention at 9 months and behavioral competencies at 18 months in rural Malawi
Cited by: 3
Author(s): Juha Pyykkö, Per Ashorn, Eletina Chilora, Kenneth Maleta, Per Ashorn, Jukka Leppänen
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0236489

Incubating parents serve as visual cues to predators in Kentish plover (Charadrius alexandrinus)
Cited by: 6
Author(s): Noémie Engel, Zsolt Végvári, Romy Rice, Vojtěch Kubelka, Tamás Székely
Software Mentions: 1
Published: almost 6 years ago

10.3389/fpsyt.2021.687487

Every Night and Every Morn: Effect of Variation in CLOCK Gene on Depression Depends on Exposure to Early and Recent Stress
Cited by: 5
Author(s): D. Győrik, Nóra Eszlári, Zsófia Gál, Dóra Török, Dániel Baksa, Zsüliet Kristóf, Sára Sütöri, Péter Petschner, Gabriella Juhász, György Bagdy, Xénia Gonda
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.pone.0088419

Bayesian Model Comparison and Parameter Inference in Systems Biology Using Nested Sampling
Cited by: 38
Author(s): Nick Pullen, Richard J. Morris
Software Mentions: 1
Published: over 12 years ago

10.3389/fpsyt.2021.698147

Conspiratorial Thinking During COVID-19: The Roles of Paranoia, Delusion-Proneness, and Intolerance of Uncertainty
Cited by: 29
Author(s): Emily K. Larsen, Kayla R. Donaldson, Megan Liew, Aprajita Mohanty
Software Mentions: 1
Published: almost 5 years ago

10.3389/fpsyt.2021.666261

Longitudinal Trends and Risk Factors for Depressed Mood Among Canadian Adults During the First Wave of COVID-19
Cited by: 10
Author(s): Gustavo S. Betini, John P. Hirdes, Rhéda Adekpedjou, Christopher M. Perlman, Nathan Huculak, Paul C. Hébert
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.pone.0101685

Genetic Variation in DNA Repair Pathways and Risk of Non-Hodgkin's Lymphoma
Cited by: 20
Author(s): Justin Rendleman, Yevgeniy Antipin, Boris Reva, Christina Adaniel, Jennifer A. Przybylo, Ana Dutra-Clarke, Nichole Hansen, Adriana Heguy, Kety Huberman, Laetitia Borsu, Ora Paltiel, Dina Ben‐Yehuda, Jennifer R. Brown, Arnold S. Freedman, Chris Sander, Andrew D. Zelenetz, Robert J. Klein, Yongzhao Shao, Mortimer J. Lacher, Joseph Vijai, Kenneth Offit, Tomas Kirchhoff
Software Mentions: 1
Published: almost 12 years ago

10.1186/s12859-018-2170-x

EqualTDRL: illustrating equivalent tandem duplication random loss rearrangements
Cited by: 7
Author(s): Tom Hartmann, Matthias Bernt, Martin Middendorf
Software Mentions: 1
Published: about 8 years ago

10.3389/fpsyg.2019.00877

Asymmetries Between Direct and Indirect Scalar Implicatures in Second Language Acquisition
Cited by: 3
Author(s): Shuo Feng, Jacee Cho
Software Mentions: 1
Published: about 7 years ago

10.1186/s12859-016-1250-z

GeneSCF: a real-time based functional enrichment tool with support for multiple organisms
Cited by: 78
Author(s): Santhilal Subhash, Chandrasekhar Kanduri
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pone.0208829

Complex spatio-temporal distribution and genomic ancestry of mitochondrial DNA haplogroups in 24,216 Danes
Cited by: 5
Author(s): Jonas Bybjerg‐Grauholm, Christian Munch Hagen, Vanessa F. Gonçalves, Marie Bækvad‐Hansen, Christine Hansen, Paula L. Hedley, Jørgen K. Kanters, Jimmi Nielsen, Michael Theisen, Ole Mors, James L. Kennedy, Thomas Damm Als, Alfonso Buil Demur, Merete Nordentoft, Anders D. Børglum, Preben Bo Mortensen, Thomas Werge, David M. Hougaard, Michael Christiansen
Software Mentions: 1
Published: over 7 years ago

10.3389/fpsyg.2014.00090

Music reduces pain and increases functional mobility in fibromyalgia
Cited by: 62
Author(s): Eduardo A. Garza‐Villarreal, Andrew D. Wilson, Lene Vase, Elvira Brattico, Fernando A. Barrios, Troels Staehelin Jensen, Juan Romero-Romo, Peter Vuust
Software Mentions: 1
Published: over 12 years ago

10.3389/fpsyg.2021.570741

Soundscape in Times of Change: Case Study of a City Neighbourhood During the COVID-19 Lockdown
Cited by: 21
Author(s): Sara Lenzi, Juan Sádaba, PerMagnus Lindborg
Software Mentions: 1
Published: about 5 years ago

10.1186/s12859-021-04324-z

LLAMA: a robust and scalable machine learning pipeline for analysis of large scale 4D microscopy data: analysis of cell ruffles and filopodia
Cited by: 1
Author(s): James G. Lefevre, Yvette W. H. Koh, Adam A. Wall, Nicholas D. Condon, Jennifer L. Stow, Nicholas A. Hamilton
Software Mentions: 1
Published: almost 5 years ago

10.1186/s12859-015-0477-4

BACA: bubble chArt to compare annotations
Cited by: 16
Author(s): Vittorio Fortino, Harri Alenius, Dario Greco
Software Mentions: 1
Published: over 11 years ago

10.1186/s12859-017-1955-7

Exploration of charge states of balanol analogues acting as ATP-competitive inhibitors in kinases
Cited by: 9
Author(s): Ari Hardianto, Muhammad Yusuf, Fei Liu, Shoba Ranganathan
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0146538

Knowledge of Bovine Tuberculosis, Cattle Husbandry and Dairy Practices amongst Pastoralists and Small-Scale Dairy Farmers in Cameroon
Cited by: 38
Author(s): Robert F. Kelly, Saidou M. Hamman, K. L. Morgan, Egbe Franklyn Nkongho, Victor Ngu Ngwa, Vincent N. Tanya, Walters N. Andu, Melissa Sander, Lucy Ndip, Ian Handel, Stella Mazeri, Adrian Muwonge, Barend M. deC. Bronsvoort
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0099782

Human Coronaviruses Associated with Upper Respiratory Tract Infections in Three Rural Areas of Ghana
Cited by: 63
Author(s): Michael Owusu, Augustina Annan, Victor M. Corman, Richard Larbi, Priscilla Anti, Jan Felix Drexler, Olivia Agbenyega, Yaw Adu‐Sarkodie, Christian Drosten
Software Mentions: 1
Published: almost 12 years ago

10.3389/fpsyg.2021.709859

Self-Transcendent Emotions and Their Social Effects: Awe, Elevation and Kama Muta Promote a Human Identification and Motivations to Help Others
Cited by: 11
Author(s): José J. Pizarro, Nekane Basabe, Itziar Fernández Sedano, Pilar Carrera, Pedro Apodaca, Carlos Ignacio Man Ging, Olaia Cusi, Darío Páez
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.pone.0098076

Genome-Wide Analysis of Cold Adaptation in Indigenous Siberian Populations
Cited by: 119
Author(s): Alexia Cardona, Luca Pagani, Tiago Antão, Daniel J. Lawson, Christina A. Eichstaedt, Bryndís Yngvadóttir, Ma Than Than Shwe, Joseph Wee, Irene Gallego Romero, Srilakshmi M. Raj, Mait Metspalu, Richard Villems, Eske Willerslev, Chris Tyler‐Smith, B. A. Malyarchuk, Miroslava Derenko, Toomas Kivisild
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0205429

Tool making cockatoos adjust the lengths but not the widths of their tools to function
Cited by: 14
Author(s): Alice M. I. Auersperg, Celeste de Kock, Mark O’Hara, Ludwig Huber
Software Mentions: 1
Published: over 7 years ago

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