Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: cran: fdrtool
https://packages.ecosyste.ms/registries/cran.r-project.org/packages/fdrtool
Estimation of (Local) False Discovery Rates and Higher Criticism
24 versions
Latest release: about 3 years ago
42 dependent packages
17,124 downloads last month
Papers Mentioning fdrtool 124
10.1186/1471-2105-12-463
Lack of sufficiently strong informative features limits the potential of gene expression analysis as predictive tool for many clinical classification problemsCited by: 11
Author(s): Kenneth R. Hess, Caimiao Wei, Yuan Qi, Takayuki Inomata, W. Fraser Symmans, Lajos Pusztai
Software Mentions: 1
Published: almost 13 years ago
10.1186/1471-2105-11-454
On the Choice and Number of Microarrays for Transcriptional Regulatory Network InferenceCited by: 12
Author(s): Elissa J. Cosgrove, Timothy S. Gardner, Eric D. Kolaczyk
Software Mentions: 1
Published: about 14 years ago
10.1371/journal.pone.0081032
Inferring the Perturbed microRNA Regulatory Networks in Cancer Using Hierarchical Gene Co-Expression SignaturesCited by: 9
Author(s): Jin Gu, Zhenyu Xuan
Software Mentions: 1
Published: about 11 years ago
10.1371/journal.pone.0121394
Neutral and Adaptive Drivers of Microgeographic Genetic Divergence within Continuous Populations: The Case of the Neotropical Tree Eperua falcata (Aubl.)Cited by: 19
Author(s): Louise Brousseau, Matthieu Foll, Caroline Scotti‐Saintagne, Ivan Scotti
Software Mentions: 1
Published: over 9 years ago
10.1038/srep34335
Matrix factorization reveals aging-specific co-expression gene modules in the fat and muscle tissues in nonhuman primatesCited by: 3
Author(s): Yongcui Wang, Weiling Zhao, Xiaobo Zhou
Software Mentions: 1
Published: about 8 years ago
10.14336/AD.2016.0330
Global Metabolic Profiling of Plasma Shows that Three-Year Mild-Caloric Restriction Lessens an Age-Related Increase in Sphingomyelin and Reduces L-leucine and L-phenylalanine in Overweight and Obese SubjectsCited by: 6
Author(s): Minjoo Kim, Sang Hyun Lee, Jong Ho Lee
Software Mentions: 1
Published: almost 9 years ago
10.1371/journal.pone.0046091
Early Detection of Malignant Pleural Mesothelioma in Asbestos-Exposed Individuals with a Noninvasive Proteomics-Based Surveillance ToolCited by: 126
Author(s): Rachel Ostroff, Michael R. Mehan, A. Keith Stewart, Deborah Ayers, Edward N. Brody, Stephen Williams, S. M. Levin, Brad Black, Michael Harbut, Michele Carbone, Chandra Goparaju, Harvey I. Pass
Software Mentions: 1
Published: about 12 years ago
10.1371/journal.pone.0049538
A Machine Learning Approach for Identifying Amino Acid Signatures in the HIV Env Gene Predictive of DementiaCited by: 17
Author(s): Alexander G. Holman, Dana Gabuzda
Software Mentions: 1
Published: about 12 years ago
10.1371/journal.pone.0019693
A Gene-Phenotype Network for the Laboratory Mouse and Its Implications for Systematic PhenotypingCited by: 12
Author(s): Octavio Espinosa, John M. Hancock
Software Mentions: 1
Published: over 13 years ago
10.1371/journal.pgen.1004967
Evolutionary Signatures amongst Disease Genes Permit Novel Methods for Gene Prioritization and Construction of Informative Gene-Based NetworksCited by: 21
Author(s): Nolan Priedigkeit, Nicholas W. Wolfe, Nathan L. Clark
Software Mentions: 1
Published: almost 10 years ago
10.3389/fneur.2021.679984
Association Between Amygdala Volume and Trajectories of Neuropsychiatric Symptoms in Alzheimer's Disease and Dementia With Lewy BodiesCited by: 5
Author(s): Alberto Jaramillo‐Jimenez, Lasse Melvær Giil, Diego Alejandro Tovar‐Rios, Miguel Germán Borda, Daniel Ferreira, Kolbjørn Brønnick, Ketil Oppedal, Dag Aarsland
Software Mentions: 1
Published: over 3 years ago
10.3390/nu10121860
The Effect of a High-Dose Vitamin B Multivitamin Supplement on the Relationship between Brain Metabolism and Blood Biomarkers of Oxidative Stress: A Randomized Control TrialCited by: 50
Author(s): Talitha C. Ford, Luke A. Downey, Tamara Simpson, Grace McPhee, Chris Oliver, Con Stough
Software Mentions: 1
Published: almost 6 years ago
10.1371/journal.pgen.1003715
Global Analysis of Fission Yeast Mating Genes Reveals New Autophagy FactorsCited by: 86
Author(s): Lingling Sun, Ming Li, Fang Suo, Xiaoman Liu, En-Zhi Shen, Bing Yang, Meng‐Qiu Dong, Weizhong He, Li-Lin Du
Software Mentions: 1
Published: over 11 years ago
10.1371/journal.pgen.1006068
Differentiation between MAMP Triggered Defenses in Arabidopsis thalianaCited by: 31
Author(s): M. Madlen Vetter, Talia L. Karasov, Joy Bergelson
Software Mentions: 1
Published: over 8 years ago
10.1534/g3.114.012096
Insight Into Genomic Changes Accompanying Divergence: Genetic Linkage Maps and Synteny of<i>Lucania goodei</i>and<i>L. parva</i>Reveal a Robertsonian FusionCited by: 10
Author(s): Emma L. Berdan, Genevieve M. Kozak, Ray Ming, A. Lane Rayburn, Ryan Kiehart, Rebecca C. Fuller
Software Mentions: 1
Published: over 10 years ago
10.1186/gb-2014-15-5-r72
Genetic factors underlying discordance in chromatin accessibility between monozygotic twinsCited by: 6
Author(s): Kwoneel Kim, Hyo-Jeong Ban, Jungmin Seo, Ki Baick Lee, Maryam Yavartanoo, Sang Cheol Kim, Kiejung Park, Seongbeom Cho, Jung Kyoon Choi
Software Mentions: 1
Published: almost 11 years ago
10.1371/journal.pgen.1001148
Widespread Over-Expression of the X Chromosome in Sterile F1 Hybrid MiceCited by: 108
Author(s): Jeffrey M. Good, Thomas Giger, Matthew D. Dean, Michael W. Nachman
Software Mentions: 1
Published: about 14 years ago
10.18632/oncotarget.25436
High-throughput testing in head and neck squamous cell carcinoma identifies agents with preferential activity in human papillomavirus-positive or negative cell linesCited by: 13
Author(s): Farhad Ghasemi, Morgan Black, Ren Sun, Frederick S. Vizeacoumar, Nicole Pinto, Kara M. Ruicci, John Yoo, Kevin Fung, Danielle MacNeil, David A. Palma, Eric Winquist, Joe S. Mymryk, Laurie Ailles, Alessandro Datti, John W. Barrett, Paul C. Boutros, Anthony C. Nichols
Software Mentions: 1
Published: over 6 years ago
10.3390/metabo9010002
Compositional Differences and Similarities between Typical Chinese Baijiu and Western Liquor as Revealed by Mass Spectrometry-Based MetabolomicsCited by: 48
Author(s): Cheng Fang, Hai Du, Jia Wang, Yan Xu
Software Mentions: 1
Published: almost 6 years ago
10.1038/srep44445
Reduced DNA methylation and psychopathology following endogenous hypercortisolism – a genome-wide studyCited by: 27
Author(s): Camilla A M Glad, Johanna C. Andersson‐Assarsson, Peter Berglund, Ragnhildur Bergthorsdottir, Oskar Ragnarsson, Gudmundur Johannsson
Software Mentions: 1
Published: over 7 years ago
10.1186/2050-6511-15-66
Exploiting high-throughput cell line drug screening studies to identify candidate therapeutic agents in head and neck cancerCited by: 24
Author(s): Anthony C. Nichols, Morgan Black, John Yoo, Nicole Pinto, Andrew D. Fernandes, Benjamin Haibe‐Kains, Paul C. Boutros, John W. Barrett
Software Mentions: 1
Published: almost 10 years ago
10.1186/1471-2334-13-203
Plasma metabolomics identifies lipid abnormalities linked to markers of inflammation, microbial translocation, and hepatic function in HIV patients receiving protease inhibitorsCited by: 105
Author(s): Edana Cassol, Vikas Misra, Alexander G. Holman, Anupa Kamat, Susan Morgello, Dana Gabuzda
Software Mentions: 1
Published: over 11 years ago
10.1186/s12879-017-2246-7
Brain and liver pathology, amyloid deposition, and interferon responses among older HIV-positive patients in the late HAART eraCited by: 29
Author(s): Isaac H. Solomon, Umberto De Girolami, Sukrutha Chettimada, Vikas Misra, Elyse J. Singer, Dana Gabuzda
Software Mentions: 1
Published: almost 8 years ago
10.1186/s12863-015-0259-z
Importance of presenting the variability of the false discovery rate controlCited by: 10
Author(s): Yi‐Ting Lin, Wen‐Chung Lee
Software Mentions: 1
Published: over 9 years ago