Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: fdrtool

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/fdrtool

Estimation of (Local) False Discovery Rates and Higher Criticism
24 versions
Latest release: almost 3 years ago
42 dependent packages
17,124 downloads last month

Papers Mentioning fdrtool 124

Lack of sufficiently strong informative features limits the potential of gene expression analysis as predictive tool for many clinical classification problems
Cited by: 11
Author(s): Kenneth R. Hess, Caimiao Wei, Yuan Qi, Takayuki Inomata, W. Fraser Symmans, Lajos Pusztai
Software Mentions: 1
Published: almost 13 years ago

10.1186/1471-2105-11-454

On the Choice and Number of Microarrays for Transcriptional Regulatory Network Inference
Cited by: 12
Author(s): Elissa J. Cosgrove, Timothy S. Gardner, Eric D. Kolaczyk
Software Mentions: 1
Published: about 14 years ago

10.1371/journal.pone.0081032

Inferring the Perturbed microRNA Regulatory Networks in Cancer Using Hierarchical Gene Co-Expression Signatures
Cited by: 9
Author(s): Jin Gu, Zhenyu Xuan
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0121394

Neutral and Adaptive Drivers of Microgeographic Genetic Divergence within Continuous Populations: The Case of the Neotropical Tree Eperua falcata (Aubl.)
Cited by: 19
Author(s): Louise Brousseau, Matthieu Foll, Caroline Scotti‐Saintagne, Ivan Scotti
Software Mentions: 1
Published: over 9 years ago

10.1038/srep34335

Matrix factorization reveals aging-specific co-expression gene modules in the fat and muscle tissues in nonhuman primates
Cited by: 3
Author(s): Yongcui Wang, Weiling Zhao, Xiaobo Zhou
Software Mentions: 1
Published: about 8 years ago

10.14336/AD.2016.0330

Global Metabolic Profiling of Plasma Shows that Three-Year Mild-Caloric Restriction Lessens an Age-Related Increase in Sphingomyelin and Reduces L-leucine and L-phenylalanine in Overweight and Obese Subjects
Cited by: 6
Author(s): Minjoo Kim, Sang Hyun Lee, Jong Ho Lee
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0046091

Early Detection of Malignant Pleural Mesothelioma in Asbestos-Exposed Individuals with a Noninvasive Proteomics-Based Surveillance Tool
Cited by: 126
Author(s): Rachel Ostroff, Michael R. Mehan, A. Keith Stewart, Deborah Ayers, Edward N. Brody, Stephen Williams, S. M. Levin, Brad Black, Michael Harbut, Michele Carbone, Chandra Goparaju, Harvey I. Pass
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0049538

A Machine Learning Approach for Identifying Amino Acid Signatures in the HIV Env Gene Predictive of Dementia
Cited by: 17
Author(s): Alexander G. Holman, Dana Gabuzda
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0019693

A Gene-Phenotype Network for the Laboratory Mouse and Its Implications for Systematic Phenotyping
Cited by: 12
Author(s): Octavio Espinosa, John M. Hancock
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pgen.1004967

Evolutionary Signatures amongst Disease Genes Permit Novel Methods for Gene Prioritization and Construction of Informative Gene-Based Networks
Cited by: 21
Author(s): Nolan Priedigkeit, Nicholas W. Wolfe, Nathan L. Clark
Software Mentions: 1
Published: over 9 years ago

10.3389/fneur.2021.679984

Association Between Amygdala Volume and Trajectories of Neuropsychiatric Symptoms in Alzheimer's Disease and Dementia With Lewy Bodies
Cited by: 5
Author(s): Alberto Jaramillo‐Jimenez, Lasse Melvær Giil, Diego Alejandro Tovar‐Rios, Miguel Germán Borda, Daniel Ferreira, Kolbjørn Brønnick, Ketil Oppedal, Dag Aarsland
Software Mentions: 1
Published: over 3 years ago

10.3390/nu10121860

The Effect of a High-Dose Vitamin B Multivitamin Supplement on the Relationship between Brain Metabolism and Blood Biomarkers of Oxidative Stress: A Randomized Control Trial
Cited by: 50
Author(s): Talitha C. Ford, Luke A. Downey, Tamara Simpson, Grace McPhee, Chris Oliver, Con Stough
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pgen.1003715

Global Analysis of Fission Yeast Mating Genes Reveals New Autophagy Factors
Cited by: 86
Author(s): Lingling Sun, Ming Li, Fang Suo, Xiaoman Liu, En-Zhi Shen, Bing Yang, Meng‐Qiu Dong, Weizhong He, Li-Lin Du
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pgen.1006068

Differentiation between MAMP Triggered Defenses in Arabidopsis thaliana
Cited by: 31
Author(s): M. Madlen Vetter, Talia L. Karasov, Joy Bergelson
Software Mentions: 1
Published: over 8 years ago

10.1534/g3.114.012096

Insight Into Genomic Changes Accompanying Divergence: Genetic Linkage Maps and Synteny of<i>Lucania goodei</i>and<i>L. parva</i>Reveal a Robertsonian Fusion
Cited by: 10
Author(s): Emma L. Berdan, Genevieve M. Kozak, Ray Ming, A. Lane Rayburn, Ryan Kiehart, Rebecca C. Fuller
Software Mentions: 1
Published: over 10 years ago

10.1186/gb-2014-15-5-r72

Genetic factors underlying discordance in chromatin accessibility between monozygotic twins
Cited by: 6
Author(s): Kwoneel Kim, Hyo-Jeong Ban, Jungmin Seo, Ki Baick Lee, Maryam Yavartanoo, Sang Cheol Kim, Kiejung Park, Seongbeom Cho, Jung Kyoon Choi
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pgen.1001148

Widespread Over-Expression of the X Chromosome in Sterile F1 Hybrid Mice
Cited by: 108
Author(s): Jeffrey M. Good, Thomas Giger, Matthew D. Dean, Michael W. Nachman
Software Mentions: 1
Published: about 14 years ago

10.18632/oncotarget.25436

High-throughput testing in head and neck squamous cell carcinoma identifies agents with preferential activity in human papillomavirus-positive or negative cell lines
Cited by: 13
Author(s): Farhad Ghasemi, Morgan Black, Ren Sun, Frederick S. Vizeacoumar, Nicole Pinto, Kara M. Ruicci, John Yoo, Kevin Fung, Danielle MacNeil, David A. Palma, Eric Winquist, Joe S. Mymryk, Laurie Ailles, Alessandro Datti, John W. Barrett, Paul C. Boutros, Anthony C. Nichols
Software Mentions: 1
Published: over 6 years ago

10.3390/metabo9010002

Compositional Differences and Similarities between Typical Chinese Baijiu and Western Liquor as Revealed by Mass Spectrometry-Based Metabolomics
Cited by: 48
Author(s): Cheng Fang, Hai Du, Jia Wang, Yan Xu
Software Mentions: 1
Published: almost 6 years ago

10.1038/srep44445

Reduced DNA methylation and psychopathology following endogenous hypercortisolism – a genome-wide study
Cited by: 27
Author(s): Camilla A M Glad, Johanna C. Andersson‐Assarsson, Peter Berglund, Ragnhildur Bergthorsdottir, Oskar Ragnarsson, Gudmundur Johannsson
Software Mentions: 1
Published: over 7 years ago

10.1186/2050-6511-15-66

Exploiting high-throughput cell line drug screening studies to identify candidate therapeutic agents in head and neck cancer
Cited by: 24
Author(s): Anthony C. Nichols, Morgan Black, John Yoo, Nicole Pinto, Andrew D. Fernandes, Benjamin Haibe‐Kains, Paul C. Boutros, John W. Barrett
Software Mentions: 1
Published: almost 10 years ago

10.1186/1471-2334-13-203

Plasma metabolomics identifies lipid abnormalities linked to markers of inflammation, microbial translocation, and hepatic function in HIV patients receiving protease inhibitors
Cited by: 105
Author(s): Edana Cassol, Vikas Misra, Alexander G. Holman, Anupa Kamat, Susan Morgello, Dana Gabuzda
Software Mentions: 1
Published: over 11 years ago

10.1186/s12879-017-2246-7

Brain and liver pathology, amyloid deposition, and interferon responses among older HIV-positive patients in the late HAART era
Cited by: 29
Author(s): Isaac H. Solomon, Umberto De Girolami, Sukrutha Chettimada, Vikas Misra, Elyse J. Singer, Dana Gabuzda
Software Mentions: 1
Published: over 7 years ago

10.1186/s12863-015-0259-z

Importance of presenting the variability of the false discovery rate control
Cited by: 10
Author(s): Yi‐Ting Lin, Wen‐Chung Lee
Software Mentions: 1
Published: over 9 years ago