Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: cran: edgeRun
https://packages.ecosyste.ms/registries/cran.r-project.org/packages/edgeRun
More Powerful Unconditional Testing of Negative Binomial Means
for Digital Gene Expression Data
3 versions
Latest release: about 10 years ago
0 downloads
Papers Mentioning edgeRun 10
10.1186/s12864-019-5504-9
Streamlined computational pipeline for genetic background characterization of genetically engineered mice based on next generation sequencing dataCited by: 5
Author(s): Carlos Farkas, Francisco Fuentes-Villalobos, Boris Rebolledo‐Jaramillo, Fernando Benavides, Ariel F. Castro, Roxana Pincheira
Software Mentions: 5
Published: over 5 years ago
10.1093/bioinformatics/btv209
edgeRun: an R package for sensitive, functionally relevant differential expression discovery using an unconditional exact testCited by: 39
Author(s): Emmanuel Dimont, Jiantao Shi, Rory Kirchner, Winston Hide
Software Mentions: 3
Published: over 9 years ago
10.1371/journal.pgen.1009185
Opposing functions of Fng1 and the Rpd3 HDAC complex in H4 acetylation in Fusarium graminearumCited by: 20
Author(s): Hang Jiang, Aliang Xia, Meng Ye, Jingyi Ren, Dongao Li, Huiquan Liu, Qinhu Wang, Ping Lü, Chunlan Wu, Jin‐Rong Xu, Cong Jiang
Software Mentions: 2
Published: almost 4 years ago
10.3389/fmicb.2018.00818
Dicer-Like Proteins Regulate Sexual Development via the Biogenesis of Perithecium-Specific MicroRNAs in a Plant Pathogenic Fungus Fusarium graminearumCited by: 31
Author(s): Wenping Zeng, Jie Wang, Ying Wang, Jing Lin, Yànpíng Fù, Jiǎtāo Xiè, Dàohóng Jiāng, Tao Chen, Huiquan Liu, Jiāsēn Chéng
Software Mentions: 2
Published: over 6 years ago
10.1038/s41598-020-66290-5
Dimethylsulfoniopropionate concentration in coral reef invertebrates varies according to species assemblagesCited by: 14
Author(s): Isis Guibert, Flavien Bourdreux, Isabelle Bonnard, Xavier Pochon, Vaimiti Dubousquet, Phila Raharivelomanana, Véronique Berteaux‐Lecellier, Gaël Lecellier
Software Mentions: 2
Published: over 4 years ago
10.3390/jof7090755
FgSfl1 and Its Conserved PKA Phosphorylation Sites Are Important for Conidiation, Sexual Reproduction, and Pathogenesis in Fusarium graminearumCited by: 5
Author(s): Chen Gong, Junqi Huang, Daiyuan Sun, Daiying Xu, Yuqian Guo, Jiangang Kang, Gang Niu, Chenfang Wang
Software Mentions: 1
Published: about 3 years ago
10.3389/fmicb.2017.02140
Sugar Metabolism of the First Thermophilic Planctomycete Thermogutta terrifontis: Comparative Genomic and Transcriptomic ApproachesCited by: 15
Author(s): Alexander G. Elcheninov, Peter Menzel, Soley Gudbergsdottir, Alexei I. Slesarev, Vitaly V. Kadnikov, Anders Krogh, E. A. Bonch-Osmolovskaya, Xu Peng, Ilya V. Kublanov
Software Mentions: 1
Published: almost 7 years ago
10.3389/fpls.2018.00438
MFS Transporters and GABA Metabolism Are Involved in the Self-Defense Against DON in Fusarium graminearumCited by: 14
Author(s): Qinhu Wang, Daipeng Chen, Mengchun Wu, Jindong Zhu, Cong Jiang, Jin‐Rong Xu, Huiquan Liu
Software Mentions: 1
Published: over 6 years ago
10.1038/srep22333
FgSsn3 kinase, a component of the mediator complex, is important for sexual reproduction and pathogenesis in Fusarium graminearumCited by: 18
Author(s): Shulin Cao, Shijie Zhang, Chaofeng Hao, Huiquan Liu, Jin‐Rong Xu, Qiaojun Jin
Software Mentions: 1
Published: over 8 years ago
10.1038/s41598-017-04960-7
RNA editing of the AMD1 gene is important for ascus maturation and ascospore discharge in Fusarium graminearumCited by: 22
Author(s): Shulin Cao, Yanan He, Chaofeng Hao, Yan Xu, Hongchang Zhang, Chenfang Wang, Huiquan Liu, Jin‐Rong Xu
Software Mentions: 1
Published: over 7 years ago