Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: depmixS4

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/depmixS4

Dependent Mixture Models - Hidden Markov Models of GLMs and Other Distributions in S4
26 versions
Latest release: over 3 years ago
4 dependent packages
1,060 downloads last month

Papers Mentioning depmixS4 27

Hidden Markov models reveal temporal patterns and sex differences in killer whale behavior
Cited by: 8
Author(s): Jennifer B. Tennessen, Marla M. Holt, Eric J. Ward, M. Bradley Hanson, Candice K. Emmons, D. K. Giles, Joyce Hogan
Software Mentions: 6
Published: about 5 years ago

10.1186/s12859-016-0991-z

Detecting broad domains and narrow peaks in ChIP-seq data with hiddenDomains
Cited by: 29
Author(s): Joshua Starmer, Terry Magnuson
Software Mentions: 5
Published: over 8 years ago

10.3389/fpsyg.2017.00429

Analyzing Dyadic Sequence Data—Research Questions and Implied Statistical Models
Cited by: 3
Author(s): Peter Fuchs, Fridtjof W. Nußbeck, Nathalie Meuwly, Guy Bodenmann
Software Mentions: 4
Published: over 7 years ago

10.1016/j.envsoft.2018.02.011

Modelling background air pollution exposure in urban environments: Implications for epidemiological research
Cited by: 27
Author(s): Álvaro Gómez-Losada, José C.M. Pires, Rafael Pino‐Mejías
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0136449

The Balance-Scale Task Revisited: A Comparison of Statistical Models for Rule-Based and Information-Integration Theories of Proportional Reasoning
Cited by: 12
Author(s): Abe D. Hofman, Ingmar Visser, Brenda R.J. Jansen, Han L. J. van der Maas
Software Mentions: 3
Published: about 9 years ago

10.7554/eLife.36245

The human leukemia virus HTLV-1 alters the structure and transcription of host chromatin in cis
Cited by: 56
Author(s): Anat Melamed, Hiroko Yaguchi, Michi Miura, Aviva Witkover, Tomas Fitzgerald, Ewan Birney, Charles R. M. Bangham
Software Mentions: 3
Published: over 6 years ago

10.1098/rsif.2017.0885

Hidden Markov models for monitoring circadian rhythmicity in telemetric activity data
Cited by: 47
Author(s): Qi Huang, Dwayne Cohen, Sandra Komarzynski, Xiao-Mei Li, Pasquale F. Innominato, Françis Lévi, Bärbel Finkenstädt
Software Mentions: 2
Published: almost 7 years ago

10.1186/s12864-015-1592-3

Using whole-genome sequences of the LG/J and SM/J inbred mouse strains to prioritize quantitative trait genes and nucleotides
Cited by: 34
Author(s): Igor Nikolskiy, Donald F. Conrad, Sung Chun, Justin C. Fay, James M. Cheverud, Heather A. Lawson
Software Mentions: 2
Published: over 9 years ago

10.1186/s12889-019-7369-x

Patterns of seasonal and pandemic influenza-associated health care and mortality in Ontario, Canada
Cited by: 2
Author(s): Michael Li, Benjamin M. Bolker, Jonathan Dushoff, Junling Ma, David J. D. Earn
Software Mentions: 2
Published: about 5 years ago

10.1111/eva.12705

Endangered Père David’s deer genome provides insights into population recovering
Cited by: 17
Author(s): Lifeng Zhu, Cao Deng, Xiang Zhao, Jingjing Ding, Huasheng Huang, Shilin Zhu, Zhiwen Wang, Siyu Qin, Yulong Ding, Guoqing Lu, Yang Zhang
Software Mentions: 2
Published: about 6 years ago

10.3389/fpls.2017.00140

Characterization of the Two-Speed Subgenomes of Fusarium graminearum Reveals the Fast-Speed Subgenome Specialized for Adaption and Infection
Cited by: 31
Author(s): Qinhu Wang, Cong Jiang, Chenfang Wang, Changjun Chen, Jin‐Rong Xu, Huiquan Liu
Software Mentions: 2
Published: almost 8 years ago

10.3389/fpsyg.2018.01738

Self-Regulation Shift Theory: A Dynamic Personal Agency Approach to Recovery Capital and Methodological Suggestions
Cited by: 20
Author(s): Charles C. Benight, Aaron Harwell, Kotaro Shoji
Software Mentions: 2
Published: about 6 years ago

10.3389/fpsyg.2019.00083

Understanding Test Takers' Choices in a Self-Adapted Test: A Hidden Markov Modeling of Process Data
Cited by: 8
Author(s): Meirav Arieli‐Attali, Lu Ou, Vanessa R. Simmering
Software Mentions: 2
Published: almost 6 years ago

10.1098/rsos.160791

Repeatability of circadian behavioural variation revealed in free-ranging marine fish
Cited by: 33
Author(s): Josep Alós, Martina Martorell-Barceló, Andrea Campos-Candela
Software Mentions: 2
Published: almost 8 years ago

10.1038/s41598-018-36011-0

Predicting Patient-ventilator Asynchronies with Hidden Markov Models
Cited by: 21
Author(s): Yaroslav Marchuk, Rudys Magrans, Bernat Sales, Jaume Montanyà, Josefina López-Aguilar, Candelaria de Haro, Gemma Gomà, Carlés Subirá, Rafael Fernández, Robert M. Kacmarek, Lluís Blanch
Software Mentions: 2
Published: almost 6 years ago

10.1111/cdev.12468

Different Executive Functions Support Different Kinds of Cognitive Flexibility: Evidence From 2‐, 3‐, and 4‐Year‐Olds
Cited by: 51
Author(s): Emma Blakey, Ingmar Visser, Daniel J. Carroll
Software Mentions: 1
Published: almost 9 years ago

10.3389/fpsyg.2021.594248

How Do Art Skills Influence Visual Search? – Eye Movements Analyzed With Hidden Markov Models
Cited by: 4
Author(s): Miles Tallon, Mark W. Greenlee, Ernst Wagner, Katrin Rakoczy, Ulrich Frick
Software Mentions: 1
Published: almost 4 years ago

10.1093/gigascience/gix106

Draft genome of the Marco Polo Sheep (Ovis ammon polii)
Cited by: 18
Author(s): Yongzhi Yang, Yutao Wang, Yue Zhao, Xiuying Zhang, Ran Li, Lei Chen, Guojie Zhang, Yu Jiang, Qiang Qiu, Wen Wang, Hong‐Jiang Wei, Kun Wang
Software Mentions: 1
Published: about 7 years ago

10.7554/eLife.57681

A versatile oblique plane microscope for large-scale and high-resolution imaging of subcellular dynamics
Cited by: 96
Author(s): Etai Sapoznik, Bo-Jui Chang, Jaewon Huh, Robert J. Ju, Evgenia V. Azarova, Theresa Pohlkamp, Erik S. Welf, David Broadbent, Alexandre F. Carisey, Samantha J. Stehbens, Kyung Min Lee, Arnaldo Marín, Ariella B. Hanker, Jens C. Schmidt, Carlos L. Arteaga, Bin Yang, Yoshihiko Kobayashi, Purushothama Rao Tata, Rory Kruithoff, Konstantin Doubrovinski, Douglas P. Shepherd, Alfred Millett-Sikking, Andrew G. York, Kevin M. Dean, Reto Fiolka
Software Mentions: 1
Published: about 4 years ago

10.1038/srep13198

The effects of graded levels of calorie restriction: IV. Non-linear change in behavioural phenotype of mice in response to short-term calorie restriction
Cited by: 19
Author(s): David Lusseau, Sharon E. Mitchell, Ceres Barros, Davina Derous, Cara Green, Luonan Chen, Jing–Dong Jackie Han, Yingchun Wang, Daniel E. L. Promislow, Alex Douglas, John R. Speakman
Software Mentions: 1
Published: about 9 years ago

10.1186/s40462-016-0093-6

Incorporating periodic variability in hidden Markov models for animal movement
Cited by: 27
Author(s): Michael Li, Benjamin M. Bolker
Software Mentions: 1
Published: almost 8 years ago

10.1111/ele.13610

Uncovering ecological state dynamics with hidden Markov models
Cited by: 92
Author(s): Brett T. McClintock, Roland Langrock, Olivier Giménez, Emmanuelle Cam, David L. Borchers, Richard Glennie, Toby A. Patterson
Software Mentions: 1
Published: about 4 years ago

10.1371/journal.pone.0195019

Investigating the development of causal inference by studying variability in 2- to 5-year-olds' behavior
Cited by: 0
Author(s): Tessa J.P. van Schijndel, Kim Huijpen, Ingmar Visser, Maartje E. J. Raijmakers
Software Mentions: 1
Published: over 6 years ago

10.3389/fnhum.2015.00537

A statistical approach for segregating cognitive task stages from multivariate fMRI BOLD time series
Cited by: 8
Author(s): Charmaine Demanuele, Florian Bähner, Michael M. Plichta, Peter Kirsch, Heike Tost, Andreas Meyer‐Lindenberg, Daniel Durstewitz
Software Mentions: 1
Published: about 9 years ago

10.3390/ijerph110302741

Clustering Multivariate Time Series Using Hidden Markov Models
Cited by: 53
Author(s): Shima Ghassempour, Federico Girosi, Anthony Maeder
Software Mentions: 1
Published: over 10 years ago

10.2196/18370

Wearable Device Heart Rate and Activity Data in an Unsupervised Approach to Personalized Sleep Monitoring: Algorithm Validation
Cited by: 11
Author(s): Jiaxing Liu, Yang Zhao, Boya Lai, Hailiang Wang, Kwok Leung Tsui
Software Mentions: 1
Published: over 4 years ago

10.1186/s40462-017-0111-3

Coupling spectral analysis and hidden Markov models for the segmentation of behavioural patterns
Cited by: 13
Author(s): Karine Heerah, Mathieu Woillez, Ronan Fablet, François Garren, Stéphane Martin, Hélène de Pontual
Software Mentions: 1
Published: about 7 years ago