Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: cran: dartR
https://packages.ecosyste.ms/registries/cran.r-project.org/packages/dartR
Importing and Analysing 'SNP' and 'Silicodart' Data Generated by
Genome-Wide Restriction Fragment Analysis
17 versions
Latest release: over 1 year ago
1 dependent package
1,578 downloads last month
Papers Mentioning dartR 48
10.1002/ece3.7625
Genetic differentiation and signatures of local adaptation revealed by RADseq for a highly dispersive mud crab <i>Scylla olivacea</i> (Herbst, 1796) in the Sulu SeaCited by: 4
Author(s): Michael John Mendiola, Rachel Ravago-Gotanco
Software Mentions: 12
Published: over 3 years ago
10.1371/journal.pone.0236084
Mating system is correlated with immunogenetic diversity in sympatric species of Peromyscine miceCited by: 0
Author(s): Jesyka Meléndez‐Rosa, Ke Bi, Eileen A. Lacey
Software Mentions: 9
Published: over 4 years ago
10.1002/ece3.7211
Investigating the morphological and genetic divergence of arctic char ( <i>Salvelinus alpinus)</i> populations in lakes of arctic AlaskaCited by: 3
Author(s): Stephen L. Klobucar, Jessica A. Rick, Elizabeth G. Mandeville, Catherine E. Wagner, Phaedra Budy
Software Mentions: 8
Published: almost 4 years ago
10.3389/fgene.2019.01221
Increased Adaptive Variation Despite Reduced Overall Genetic Diversity in a Rapidly Adapting InvaderCited by: 39
Author(s): D. Selechnik, Mark F. Richardson, Richard Shine, Jayna L. DeVore, Simon Ducatez, Lee A. Rollins
Software Mentions: 8
Published: about 5 years ago
10.1099/mgen.0.000627
Current population structure and pathogenicity patterns of Ascochyta rabiei in AustraliaCited by: 8
Author(s): Ido Bar, Prabhakaran Thanjavur Sambasivam, Jenny Davidson, Lina M Farfan-Caceres, Robert C. Lee, Kristy Hobson, Kevin Moore, R Ford
Software Mentions: 8
Published: over 3 years ago
10.1002/ece3.7428
An endangered flightless grasshopper with strong genetic structure maintains population genetic variation despite extensive habitat lossCited by: 15
Author(s): Ary A. Hoffmann, Vanessa L. White, Moshe Jasper, Hiromi Yagui, Steve Sinclair, Michael R. Kearney
Software Mentions: 8
Published: over 3 years ago
10.1093/aobpla/plab049
Genetic diversity and population structure of a global invader Mayweed chamomile (<i>Anthemis cotula</i>): management implicationsCited by: 2
Author(s): Subodh Adhikari, Samuel R. Revolinski, Sanford D. Eigenbrode, Ian C. Burke
Software Mentions: 7
Published: over 3 years ago
10.1016/j.heliyon.2021.e06160
Genomic evidence supports the introgression between two sympatric stickleback species inhabiting the White Sea basinCited by: 4
Author(s): Artem Nedoluzhko, Fedor Sharko, Svetlana Tsygankova, Eugenia Boulygina, Amina S. Ibragimova, Anton Teslyuk, Jorge Galindo-Villegas, С. М. Расторгуев
Software Mentions: 7
Published: almost 4 years ago
10.1002/ece3.6802
Concordant geographic and genetic structure revealed by genotyping‐by‐sequencing in a New Zealand marine isopodCited by: 7
Author(s): William S. Pearman, Sarah J. Wells, Olin K. Silander, Nikki E. Freed, James Dale
Software Mentions: 7
Published: about 4 years ago
10.1038/s41598-020-76364-z
Genetic evidence supports three previously described species of greater glider, Petauroides volans, P. minor, and P. armillatusCited by: 21
Author(s): Denise C. McGregor, Amanda Padovan, Arthur Georges, Andrew K. Krockenberger, Hwan Jin Yoon, Kara N. Youngentob
Software Mentions: 7
Published: about 4 years ago
10.1038/s41598-020-67397-5
Genome-wide patterns of differentiation over space and time in the Queensland fruit flyCited by: 14
Author(s): Ángel David Popa-Báez, Renee A. Catullo, Siu Fai Lee, Heng Lin Yeap, Roslyn Mourant, Michael Frommer, J. A. Sved, Emilie Cameron, Owain Edwards, Phillip W. Taylor, John G. Oakeshott
Software Mentions: 7
Published: over 4 years ago
10.1002/ece3.6927
Disjunction between canola distribution and the genetic structure of its recently described pest, the canola flower midge (<i>Contarinia brassicola</i>)Cited by: 5
Author(s): Erin O. Campbell, Julian R. Dupuis, Jennifer Holowachuk, Shane Hladun, Meghan A. Vankosky, Boyd A. Mori
Software Mentions: 6
Published: about 4 years ago
10.1371/journal.pone.0239122
DArTSeq SNP-based markers revealed high genetic diversity and structured population in Ethiopian cowpea [Vigna unguiculata (L.) Walp] germplasmsCited by: 26
Author(s): Selamawit Ketema, Bizuayehu Tesfaye, Gemechu Keneni, Berhanu Amsalu Fenta, Ermias Assefa, Nicolas Greliche, Eunice Machuka, Nasser Yao
Software Mentions: 6
Published: about 4 years ago
10.1186/s12864-019-5806-y
From reference genomes to population genomics: comparing three reference-aligned reduced-representation sequencing pipelines in two wildlife speciesCited by: 44
Author(s): Belinda Wright, Katherine A. Farquharson, Elspeth A. McLennan, Katherine Belov, Carolyn J. Hogg, Catherine E. Grueber
Software Mentions: 5
Published: over 5 years ago
10.1371/journal.ppat.1009313
Diverging patterns of introgression from Schistosoma bovis across S. haematobium African lineagesCited by: 24
Author(s): Olivier Rey, Ève Toulza, Cristian Chaparro, Jean‐François Allienne, Julien Kincaid-Smith, Eglantine Mathieu‐Bégné, Fiona Allan, David Rollinson, Bonnie L. Webster, Jérôme Boissier
Software Mentions: 5
Published: almost 4 years ago
10.1111/eva.12875
Weak genetic structure despite strong genomic signal in lesser sandeel in the North SeaCited by: 16
Author(s): Belén Jiménez‐Mena, Alan Le Moan, Asbjørn Christensen, Mikael van Deurs, Henrik Mosegaard, Jakob Hemmer‐Hansen, Dorte Bekkevold
Software Mentions: 5
Published: about 5 years ago
10.1002/ece3.7403
Genomic divergence in sympatry indicates strong reproductive barriers and cryptic species within <i>Eucalyptus salubris</i>Cited by: 9
Author(s): Rachel M. Binks, Dorothy A. Steane, Margaret Byrne
Software Mentions: 4
Published: over 3 years ago
10.1038/s41598-020-58398-5
Phylogenomic Perspective on a Unique Mycobacterium bovis Clade Dominating Bovine Tuberculosis Infections among Cattle and Buffalos in Northern BrazilCited by: 8
Author(s): Marília Lima da Conceição, Emilyn Costa Conceição, Ismari Perini Furlaneto, Sandro Patroca da Silva, Arthur Emil dos Santos Guimarães, Pedro Gomes, María Laura Boschiroli, Lorraine Michelet, Thomas A. Kohl, Katharina Kranzer, Loreno da Costa Francez, Luana Nepomuceno Gondim Costa Lima, Isabel Portugal, João Perdigão, Karla Valéria Batista Lima
Software Mentions: 4
Published: almost 5 years ago
10.7717/peerj.7971
Crypsis and convergence: integrative taxonomic revision of the <i>Gehyra australis</i> group (Squamata: Gekkonidae) from northern AustraliaCited by: 9
Author(s): Paul M. Oliver, Audrey Miranda Prasetya, Leonardo G. Tedeschi, Jéssica Fenker, Ryan J. Ellis, Craig Moritz
Software Mentions: 4
Published: almost 5 years ago
10.3389/fgene.2020.556267
Genome Complexity Reduction High-Throughput Genome Sequencing of Green Iguana (Iguana iguana) Reveal a Paradigm Shift in Understanding Sex-Chromosomal Linkages on Homomorphic X and Y Sex ChromosomesCited by: 13
Author(s): Tassika Koomgun, Nararat Laopichienpong, Worapong Singchat, Thitipong Panthum, Rattanin Phatcharakullawarawat, Ekaphan Kraichak, Siwapech Sillapaprayoon, Syed Farhan Ahmad, Narongrit Muangmai, Surin Peyachoknagul, Prateep Duengkae, Tariq Ezaz, Kornsorn Srikulnath
Software Mentions: 4
Published: about 4 years ago
10.1111/eva.13234
Association of putatively adaptive genetic variation with climatic variables differs between a parasite and its hostCited by: 5
Author(s): Sheree J. Walters, Todd Robinson, Margaret Byrne, Grant Wardell‐Johnson, Paul Nevill
Software Mentions: 4
Published: over 3 years ago
10.1002/evl3.184
The geographic mosaic of arms race coevolution is closely matched to prey population structureCited by: 19
Author(s): Michael T. J. Hague, Amber N. Stokes, Chris R. Feldman, Edmund D. Brodie
Software Mentions: 4
Published: over 4 years ago
10.1073/pnas.2017384118
Fifty million years of beetle evolution along the Antarctic Polar FrontCited by: 17
Author(s): Helena P. Baird, Seunggwan Shin, Rolf G. Oberprieler, M. Hullé, Philippe Vernon, Katherine L. Moon, Richard H. Adams, Duane D. McKenna, Steven Loudon Chown
Software Mentions: 4
Published: over 3 years ago
10.1038/s41598-021-85735-z
The phylogeographic history of Krascheninnikovia reflects the development of dry steppes and semi-deserts in EurasiaCited by: 9
Author(s): Anna Seidl, Karin Tremetsberger, Simon Pfanzelt, Frank R. Blattner, Barbara Neuffer, Nikolai Friesen, Herbert Hurka, А. И. Шмаков, Batlai Oyuntsetseg, Anže Žerdoner Čalasan, Polina V. Vesselova, Karl‐Georg Bernhardt
Software Mentions: 4
Published: almost 4 years ago
10.1038/s41437-021-00455-4
Genomic methods reveal independent demographic histories despite strong morphological conservatism in fish speciesCited by: 2
Author(s): Jessika M. M. Neves, Zachary J Nolen, Nídia Noemi Fabré, Tamí Mott, Ricardo José Garcia Pereira
Software Mentions: 4
Published: over 3 years ago
10.3389/fpls.2021.692463
Genome-Wide Assessment of Population Structure and Genetic Diversity of the Global Finger Millet Germplasm Panel Conserved at the ICRISAT GenebankCited by: 3
Author(s): C. Backiyalakshmi, Mani Vetriventhan, Santosh Deshpande, C. Babu, Victor Allan, D. Naresh, Rajeev Gupta, V. C. R. Azevedo
Software Mentions: 3
Published: over 3 years ago
10.1371/journal.pone.0253600
Genetic diversity and population structure analysis of bambara groundnut (Vigna subterrenea L) landraces using DArT SNP markersCited by: 15
Author(s): Charles U. Uba, Happiness Ogba Oselebe, Agajie Tesfaye, Wosene Gebreselassie Abtew
Software Mentions: 3
Published: over 3 years ago
10.1098/rsos.190233
Taxonomy and conservation of grassland earless dragons: new species and an assessment of the first possible extinction of a reptile on mainland AustraliaCited by: 11
Author(s): Jane Melville, Kirilee Chaplin, Mark N. Hutchinson, Joanna Sumner, Bernd Gruber, Anna J. MacDonald, Stephen D. Sarre
Software Mentions: 3
Published: over 5 years ago
10.3390/genes12091327
Genome-Wide SNPs Detect Hybridisation of Marsupial Gliders (Petaurus breviceps breviceps × Petaurus norfolcensis) in the WildCited by: 7
Author(s): Monica Knipler, Mark Dowton, Katarina M. Mikac
Software Mentions: 3
Published: over 3 years ago
10.1371/journal.pone.0205862
Translocation, genetic structure and homing ability confirm geographic barriers disrupt saltwater crocodile movement and dispersalCited by: 17
Author(s): Yusuke Fukuda, Grahame J. W. Webb, Charlie Manolis, Garry Lindner, Sam C. Banks
Software Mentions: 3
Published: over 5 years ago
10.1002/ece3.5012
Accounting for kin sampling reveals genetic connectivity in Tasmanian and New Zealand school sharks, <i>Galeorhinus galeus</i>Cited by: 12
Author(s): Floriaan Devloo‐Delva, Grégory E. Maes, Sebastián Hernández, Jaime D. McAllister, Rasanthi M. Gunasekera, Peter M. Grewe, Robin B. Thomson, Pierre Feutry
Software Mentions: 3
Published: over 5 years ago
10.3389/fgene.2021.702822
Genome-Wide Analyses Reveal the Genetic Architecture and Candidate Genes of Indicine, Taurine, Synthetic Crossbreds, and Locally Adapted Cattle in BrazilCited by: 8
Author(s): Lucas Lima Verardo, Fabyano F. Silva, M. A. Machado, J. C. do C. Panetto, Daniele Ribeiro de Lima Reis Faza, Pamela Itajara Otto, L. C. de A. Regitano, Luiz Otávio Campos da Silva, A. A. do Egito, Maria do Socorro Maués Albuquerque, Ricardo Zanella, Marcos Vinícius Gualberto Barbosa da Silva
Software Mentions: 2
Published: over 3 years ago
10.1186/s13104-021-05750-1
DArT-based evaluation of soybean germplasm from Polish Gene BankCited by: 8
Author(s): E. Czembor, Jerzy H. Czembor, Radosław Suchecki, Nathan S. Watson-Haigh
Software Mentions: 2
Published: over 3 years ago
10.1002/ece3.7897
Establishing conservation units to promote recovery of two threatened freshwater mussel species (Bivalvia: Unionida: <i>Potamilus</i> )Cited by: 7
Author(s): Chase H. Smith, Nathan A. Johnson, Clinton R. Robertson, Robert D. Doyle, Charles R. Randklev
Software Mentions: 2
Published: over 3 years ago
10.1002/ece3.6670
Comparative assessment of range‐wide patterns of genetic diversity and structure with SNPs and microsatellites: A case study with Iberian amphibiansCited by: 18
Author(s): Miguel Camacho‐Sanchez, Guillermo Velo‐Antón, Jeffrey O. Hanson, Ana Veríssimo, Íñigo Martínez‐Solano, Adam Marques, Craig Moritz, Sílvia B. Carvalho
Software Mentions: 2
Published: over 4 years ago
10.1111/eva.13033
Extreme seascape drives local recruitment and genetic divergence in brooding and spawning corals in remote north‐west AustraliaCited by: 22
Author(s): Jim N. Underwood, Zoe T. Richards, Oliver Berry, Daniel Oades, Azton Howard, James Gilmour
Software Mentions: 2
Published: over 4 years ago
10.1111/eva.12913
Springtail phylogeography highlights biosecurity risks of repeated invasions and intraregional transfers among remote islandsCited by: 15
Author(s): Helena P. Baird, Katherine L. Moon, Charlene Janion‐Scheepers, Steven L. Chown
Software Mentions: 2
Published: almost 5 years ago
10.1111/eva.12892
Genome‐wide SNPs resolve spatiotemporal patterns of connectivity within striped marlin (<i>Kajikia audax</i>), a broadly distributed and highly migratory pelagic speciesCited by: 19
Author(s): Nadya R Mamoozadeh, John E. Graves, Jan R. McDowell
Software Mentions: 2
Published: about 5 years ago
10.3389/fgene.2018.00438
Use of High Density Single Nucleotide Polymorphism (SNP) Arrays to Assess Genetic Diversity and Population Structure of Dairy Cattle in Smallholder Dairy Systems: The Case of Girinka Programme in RwandaCited by: 10
Author(s): M. G. G. Chagunda, Fidalis D. N. Mujibi, Théogéne Dusingizimana, Olivier Kamana, Evans K. Cheruiyot, Okeyo Ally Mwai
Software Mentions: 2
Published: about 6 years ago
10.3390/genes12020252
High Genetic Diversity despite Conserved Karyotype Organization in the Giant Trahiras from Genus Hoplias (Characiformes, Erythrinidae)Cited by: 4
Author(s): Francisco de Menezes Cavalcante Sassi, Manolo F. Perez, Vanessa Cristina Sales Oliveira, Geize Aparecida Deon, Fernando Henrique Santos de Souza, Pedro H. N. Ferreira, Ezequiel Aguiar de Oliveira, Terumi Hatanaka, Thomas Liehr, Luiz Antônio Carlos Bertollo, Marcelo de Bello Cioffi
Software Mentions: 2
Published: almost 4 years ago
10.3390/genes12050786
Population Genetics of the Invasive Red Fox, Vulpes vulpes, in South-Eastern AustraliaCited by: 0
Author(s): Kalynda M.-A. Watson, Katarina M. Mikac, Sibylle G. Schwab
Software Mentions: 2
Published: over 3 years ago
10.1038/s41598-020-58525-2
Fine-scale species distribution modelling and genotyping by sequencing to examine hybridisation between two narrow endemic plant speciesCited by: 11
Author(s): JE Ball, Todd Robinson, Grant Wardell‐Johnson, Jessica Bovill, Margaret Byrne, Paul Nevill
Software Mentions: 2
Published: almost 5 years ago
10.3390/ijms20174296
Deciphering the Evolutionary History of Arowana Fishes (Teleostei, Osteoglossiformes, Osteoglossidae): Insight from Comparative CytogenomicsCited by: 17
Author(s): Marcelo de Bello Cioffi, Petr Ráb, Tariq Ezaz, Luiz Antônio Carlos Bertollo, Sébastien Lavoué, Ezequiel Aguiar de Oliveira, Alexandr Sember, Wagner Franco Molina, Fernando Henrique Santos de Souza, Zuzana Majtánová, Thomas Liehr, Ahmed Al-Rikabi, Cássia Fernanda Yano, Patrik Ferreira Viana, Eliana Feldberg, Peter J. Unmack, Terumi Hatanaka, Alongklod Tanomtong, Manolo F. Perez
Software Mentions: 1
Published: over 5 years ago
10.1111/eva.13173
Using multiple sources during reintroduction of a locally extinct population benefits survival and reproduction of an endangered freshwater fishCited by: 11
Author(s): Maiko L. Lutz, Zeb Tonkin, Jian D. L. Yen, Glen Johnson, Brett A. Ingram, Joanne Sharley, Jarod Lyon, David G. Chapple, Paul Sunnucks, Alexandra Pavlova
Software Mentions: 1
Published: about 4 years ago
10.1002/ece3.7458
Pleistocene divergence in the absence of gene flow among populations of a viviparous reptile with intraspecific variation in sex determinationCited by: 5
Author(s): Peta Hill, Erik Wapstra, Tariq Ezaz, Christopher P. Burridge
Software Mentions: 1
Published: almost 4 years ago
10.1002/ece3.8051
Assessment of genetic relationships among native and introduced Himalayan balsam ( <i>Impatiens glandulifera</i> ) plants based on genome profilingCited by: 3
Author(s): Helena Korpelainen, Sakina Elshibli
Software Mentions: 1
Published: over 3 years ago
10.1186/s12862-021-01852-3
Delimiting cryptic species within the brown-banded bamboo shark, Chiloscyllium punctatum in the Indo-Australian region with mitochondrial DNA and genome-wide SNP approachesCited by: 4
Author(s): Fahmi Fahmi, Ian R. Tibbetts, Michael B. Bennett, Christine L. Dudgeon
Software Mentions: 1
Published: over 3 years ago
10.1038/s41598-019-40865-3
Perspectives on the clonal persistence of presumed ‘ghost’ genomes in unisexual or allopolyploid taxa arising via hybridizationCited by: 11
Author(s): Peter J. Unmack, Mark Adams, Jonas Bylemans, Christopher M. Hardy, Michael P. Hammer, Arthur Georges
Software Mentions: 1
Published: almost 6 years ago