Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: dMod

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/dMod

Dynamic Modeling and Parameter Estimation in ODE Models
8 versions
Latest release: over 3 years ago
220 downloads last month

Papers Mentioning dMod 9

FAMoS: A Flexible and dynamic Algorithm for Model Selection to analyse complex systems dynamics
Cited by: 6
Author(s): Michael Gabel, Tobias M. Hohl, Andrea Imle, Oliver T. Fackler, Frederik Graw
Software Mentions: 6
Published: about 5 years ago

10.1371/journal.pcbi.1008495

Confidence intervals by constrained optimization—An algorithm and software package for practical identifiability analysis in systems biology
Cited by: 5
Author(s): Ivan I. Borisov, Eugeniy Metelkin
Software Mentions: 6
Published: over 3 years ago

10.1371/journal.pbio.3000562

Should a viral genome stay in the host cell or leave? A quantitative dynamics study of how hepatitis C virus deals with this dilemma
Cited by: 6
Author(s): Shoya Iwanami, Kosaku Kitagawa, Hirofumi Ohashi, Yasufumi Asai, Kaho Shionoya, Wakana Saso, Kazane Nishioka, Hisashi Inaba, Shinji Nakaoka, Takaji Wakita, Odo Diekmann, Shingo Iwami, Koichi Watashi
Software Mentions: 4
Published: about 4 years ago

10.3389/fcell.2016.00041

Customized Steady-State Constraints for Parameter Estimation in Non-Linear Ordinary Differential Equation Models
Cited by: 17
Author(s): Marcus Rosenblatt, Jens Timmer, Daniel Kaschek
Software Mentions: 3
Published: over 8 years ago

10.1371/journal.pcbi.1008646

PEtab—Interoperable specification of parameter estimation problems in systems biology
Cited by: 50
Author(s): Leonard Schmiester, Yannik Schälte, Frank Bergmann, Tacio Camba, Erika Dudkin, Janine Egert, Fabian Fröhlich, Lara Fuhrmann, Adrian L. Hauber, Svenja Kemmer, Polina Lakrisenko, Carolin Loos, Simon Merkt, Wolfgang G. Müller, Dilan Pathirana, Elba Raimúndez, Lukas Refisch, Marcus Rosenblatt, Paul Stapor, Philipp Städter, Dantong Wang, Franz-Georg Wieland, Julio R. Banga, Jens Timmer, Alejandro F. Villaverde, Sven Sahle, Clemens Kreutz, Jan Hasenauer, Daniel Weindl
Software Mentions: 3
Published: over 3 years ago

10.1371/journal.pone.0162366

Driving the Model to Its Limit: Profile Likelihood Based Model Reduction
Cited by: 74
Author(s): Thomas Maiwald, Helge Hass, Bernhard Steiert, J Joep Vanlier, Raphael Engesser, Andreas Raue, Friederike Kipkeew, Hans H. Bock, Daniel Kaschek, Clemens Kreutz, Jens Timmer
Software Mentions: 2
Published: about 8 years ago

10.1371/journal.pone.0187628

Plant-type phytoene desaturase: Functional evaluation of structural implications
Cited by: 25
Author(s): Julian Koschmieder, M. Fehling-Kaschek, Patrick Schaub, Sandro Ghisla, Anton Brausemann, Jens Timmer, Peter Beyer
Software Mentions: 2
Published: almost 7 years ago

10.1093/jxb/erw356

Enzymatic study on AtCCD4 and AtCCD7 and their potential to form acyclic regulatory metabolites
Cited by: 71
Author(s): Mark Bruno, Julian Koschmieder, Florian Wuest, Patrick Schaub, M. Fehling-Kaschek, Jens Timmer, Peter Beyer, Salim Al‐Babili
Software Mentions: 2
Published: almost 8 years ago

10.1038/s41598-019-49019-x

Mathematical modeling of drug-induced receptor internalization in the HER2-positive SKBR3 breast cancer cell-line
Cited by: 18
Author(s): M. Fehling-Kaschek, Diana B. Peckys, Daniel Kaschek, Jens Timmer, Niels de Jonge
Software Mentions: 1
Published: about 5 years ago