cran: corrplot | Projects | Ecosyste.ms: Papers

10.3389/fmicb.2018.02494

Altered Gut Microbiota and Compositional Changes in Firmicutes and Proteobacteria in Mexican Undernourished and Obese Children
Cited by: 90
Author(s): Eder Orlando Méndez-Salazar, Marı́a Guadalupe Ortiz-López, Marı́a de los Ángeles Granados-Silvestre, Berenice Palacios‐González, Mészáros Márta
Software Mentions: 4
Published: about 6 years ago

10.3389/fgene.2020.598743

A Pan-Cancer Study of Epidermal Growth Factor-Like Domains 6/7/8 as Therapeutic Targets in Cancer
Cited by: 3
Author(s): Shanping Shi, Ting Ma, Yang Xi
Software Mentions: 4
Published: almost 4 years ago

10.3390/ani11020450

In Vitro Assessment of Enteric Methane Emission Potential of Whole-Plant Barley, Oat, Triticale and Wheat
Cited by: 5
Author(s): Isaac A. Aboagye, Christine Rosser, V. S. Baron, K. A. Beauchemin
Software Mentions: 4
Published: almost 4 years ago

10.1371/journal.pone.0204279

Multiple genomic regions influence root morphology and seedling growth in cultivated sunflower (Helianthus annuus L.) under well-watered and water-limited conditions
Cited by: 19
Author(s): Rishi R. Masalia, Andries A. Temme, Nicole de leon Torralba, John M. Burke
Software Mentions: 4
Published: about 6 years ago

10.1038/s41598-021-95455-z

Evaluation of two highly effective lipid-lowering therapies in subjects with acute myocardial infarction
Cited by: 6
Author(s): Aline Klassen, Andréa Tedesco Faccio, Carolina R. C. Picossi, Priscilla Bento Matos Cruz Derogis, Carlos Eduardo dos Santos Ferreira, Aline Soriano Lopes, Alessandra Sussulini, Elisa Castañeda Santa Cruz, Rafaela Tudela Bastos, Stefanie Caroline Fontoura, Antônio Martins Figueiredo Neto, Marina Franco Maggi Tavares, Maria Cristina Izar, Francisco Antônio Helfenstein Fonseca
Software Mentions: 4
Published: over 3 years ago

10.3389/fpls.2021.627432

Drivers of Natural Variation in Water-Use Efficiency Under Fluctuating Light Are Promising Targets for Improvement in Sorghum
Cited by: 21
Author(s): Charles P. Pignon, Andrew D. B. Leakey, Stephen P. Long, Johannes Kromdijk
Software Mentions: 4
Published: almost 4 years ago

10.18632/aging.202686

An immunoscore nomogram for predicting survival in patients with oesophageal cancer
Cited by: 0
Author(s): Gaoming Li, Qifan Song, Angsong Cai, Zeliang Wei, Rui Zhang, Dali Yi, Jia Chen, Fang Li, Yanqi Zhang, Ling Liu, Yazhou Wu, Dong Yi
Software Mentions: 4
Published: over 3 years ago

10.3390/cancers11040561

Expression Profiling of Calcium Channels and Calcium-Activated Potassium Channels in Colorectal Cancer
Cited by: 47
Author(s): İbrahim Şehitoğlu, Hassan Dakik, Christophe Vandier, Romain Chautard, Gilles Paintaud, Frédéric Mazurier, Thierry Lecomte, Maxime Guéguinou, William Raoul
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-018-32670-1

Aphid infestation in the phyllosphere affects primary metabolic profiles in the arbuscular mycorrhizal hyphosphere
Cited by: 10
Author(s): Carmina Cabral, Bernd Wollenweber, Carla António, Ana Margarida Rodrigues, Sabine Ravnskov
Software Mentions: 4
Published: about 6 years ago

10.3390/cancers12071816

Characterization of Class-3 Semaphorin Receptors, Neuropilins and Plexins, as Therapeutic Targets in a Pan-Cancer Study
Cited by: 16
Author(s): Xiaoli Zhang, Shuai Shao, Lang Li
Software Mentions: 4
Published: over 4 years ago

10.3389/fonc.2021.704994

Enhanced CT-Based Radiomics to Predict Micropapillary Pattern Within Lung Invasive Adenocarcinoma
Cited by: 4
Author(s): Yunyu Xu, Wenbin Ji, Liqiao Hou, Shuangxiang Lin, Yangyang Shi, Chao Zhou, Yinnan Meng, Wei Wang, Xiaofeng Chen, Meihao Wang, Haihua Yang
Software Mentions: 4
Published: about 3 years ago

10.1155/2021/5579736

Glycine-Serine-Threonine Metabolic Axis Delays Intervertebral Disc Degeneration through Antioxidant Effects: An Imaging and Metabonomics Study
Cited by: 9
Author(s): Xiaolin Wu, Chang Liu, Shuai Yang, Nana Shen, Yan Wang, Yi Zhu, Zhaoyang Guo, Sihyung Yang, Dongming Xing, Houxi Li, Bohua Chen, Hongfei Xiang
Software Mentions: 4
Published: about 3 years ago

10.1038/s41598-020-78589-4

GRAS-Di system facilitates high-density genetic map construction and QTL identification in recombinant inbred lines of the wheat progenitor Aegilops tauschii
Cited by: 16
Author(s): Yuka Miki, Kentaro Yoshida, Hiroyuki Enoki, Saburô Kômura, Kazuko Suzuki, Minoru Inamori, Ryo Nishijima, Shigeo Takumi
Software Mentions: 4
Published: almost 4 years ago

10.1186/s12864-016-3131-2

Unraveling the molecular basis of oxidative stress management in a drought tolerant rice genotype Nagina 22
Cited by: 24
Author(s): Chandra Prakash, S. V. Amitha Mithra, Praveen Singh, Trilochan Mohapatra, Nagendra Singh
Software Mentions: 4
Published: about 8 years ago

10.3389/fmicb.2021.642730

The Composition of Root-Associated Bacteria and Fungi of Astragalus mongholicus and Their Relationship With the Bioactive Ingredients
Cited by: 9
Author(s): Yanmei Li, Yang Liu, Hui Zhang, Yan Yang, Gehong Wei, Zhe‐Fei Li
Software Mentions: 4
Published: over 3 years ago

10.3389/fgene.2020.00912

Identification and Validation of an Immunological Expression-Based Prognostic Signature in Breast Cancer
Cited by: 7
Author(s): Jianying Pei, Yan Li, Tianxiong Su, Qiaomei Zhang, Xiaohai He, Dan Tao, Yanyun Wang, Manqiu Yuan, Yanping Li
Software Mentions: 4
Published: about 4 years ago

10.3390/cancers13122948

DNA Methylation-Based Estimates of Circulating Leukocyte Composition for Predicting Colorectal Cancer Survival: A Prospective Cohort Study
Cited by: 2
Author(s): Xīn Gào, Yan Zhang, Xiangwei Li, Lina Jansen, Elizabeth Alwers, Melanie Bewerunge-Hudler, Matthias Schick, Jenny Chang‐Claude, Michael Hoffmeister, Hermann Brenner
Software Mentions: 4
Published: over 3 years ago

10.1186/s12913-020-05989-7

Social determinants of health and hospital readmissions: can the HOSPITAL risk score be improved by the inclusion of social factors?
Cited by: 4
Author(s): Shirlene Obuobi, Rhys Chua, Stephanie Besser, Corey E. Tabit
Software Mentions: 4
Published: almost 4 years ago

10.1038/s41598-018-34190-4

Milk Metabolomics Data Reveal the Energy Balance of Individual Dairy Cows in Early Lactation
Cited by: 31
Author(s): Wei Xu, Jacques Vervoort, Edoardo Saccenti, Renny van Hoeij, B. Kemp, A.T.M. van Knegsel
Software Mentions: 4
Published: about 6 years ago

10.3389/fcimb.2021.715998

Co-Occurrence of Viruses, Plant Pathogens, and Symbionts in an Underexplored Hemipteran Clade
Cited by: 0
Author(s): McKinlee M. Salazar, Mônica Tallarico Pupo, Amanda M. V. Brown
Software Mentions: 4
Published: about 3 years ago

10.3390/antiox10030498

Characterization of NADPH Oxidase Expression and Activity in Acute Myeloid Leukemia Cell Lines: A Correlation with the Differentiation Status
Cited by: 10
Author(s): Hassan Dakik, Maya El Dor, Joan Leclerc, Farah Kouzi, Ali Nehme, Margaux Deynoux, Christelle Debeissat, Georges Khamis, Elfi Ducrocq, Aida Ibrik, Marie‐José Stasia, Houssam Raad, Hamid Reza Rezvani, Fabrice Gouilleux, Kazem Zibara, Olivier Hérault, Frédéric Mazurier
Software Mentions: 4
Published: over 3 years ago

10.3390/microorganisms9071503

Metagenomic Insight of a Full Scale Eco-Friendly Treatment System of Textile Dye Wastewater Using Bioaugmentation of the Composite Culture CES-1
Cited by: 6
Author(s): Aalfin-Emmanuel Santhanarajan, Woo Jun Sul, Keunje Yoo, Hoon Je Seong, Hong Gi Kim, Sung-Cheol Koh
Software Mentions: 4
Published: over 3 years ago

10.1038/s41598-018-34453-0

Maternal High-Fat Diet Programs Offspring Liver Steatosis in a Sexually Dimorphic Manner in Association with Changes in Gut Microbial Ecology in Mice
Cited by: 64
Author(s): Umesh D. Wankhade, Ying Zhang, Ping Kang, Maria P. Alfaro, Sree V. Chintapalli, Brian D. Piccolo, Kelly E. Mercer, Aline Andres, Keshari Thakali, Kartik Shankar
Software Mentions: 4
Published: about 6 years ago

10.3390/v13010009

Characterization of a Novel Mitovirus of the Sand Fly Lutzomyia longipalpis Using Genomic and Virus–Host Interaction Signatures
Cited by: 14
Author(s): Paula Luize Camargos Fonseca, Flávia V Ferreira, Felipe Silva, Liliane Santana Oliveira, João Trindade Marques, Aristóteles Goés-Neto, Eric Roberto Guimarães Rocha Aguiar, Arthur Gruber
Software Mentions: 4
Published: almost 4 years ago

10.18632/oncotarget.7209

Large-scale profiling of signalling pathways reveals an asthma specific signature in bronchial smooth muscle cells
Cited by: 20
Author(s): Elena Alexandrova, Giovanni Nassa, Giacomo Corleone, Anton Buzdin, Alexander Aliper, Nadezhda V. Terekhanova, Denis Shepelin, Alex Zhavoronkov, Michael Tamm, Luciano Milanesi, Nicola Miglino, Alessandro Weisz, Pieter Borger
Software Mentions: 4
Published: almost 9 years ago

10.1186/s40104-021-00617-8

Effects of supplemental xylanase and xylooligosaccharides on production performance and gut health variables of broiler chickens
Cited by: 27
Author(s): Amit Kumar Singh, Birendra Mishra, M.R. Bedford
Software Mentions: 4
Published: about 3 years ago

10.3389/fpsyg.2021.736499

Effects of the COVID-19 Health Crisis on Sports Practice, Life Quality, and Emotional Status in Spanish High-Performance Athletes
Cited by: 9
Author(s): Elena Conde, Luis Manuel Martínez-Aranda, Gema Calleja Sanz, Cristina López de Subijana, Antonio Sánchez Pato, Álvaro Díaz-Aroca, Alejandro Leiva-Arcas, Juan Alfonso García-Roca, Yago Ramis, Miquel Torregrossa
Software Mentions: 4
Published: about 3 years ago

10.1371/journal.pone.0047879

Simultaneous Amplicon Sequencing to Explore Co-Occurrence Patterns of Bacterial, Archaeal and Eukaryotic Microorganisms in Rumen Microbial Communities
Cited by: 281
Author(s): Sandra Kittelmann, Henning Seedorf, William A. Walters, José C. Clemente, Rob Knight, Jeffrey I. Gordon, Peter H. Janssen
Software Mentions: 4
Published: almost 12 years ago

10.3389/fpls.2018.01526

Responses of the Endophytic Bacterial Communities of Juncus acutus to Pollution With Metals, Emerging Organic Pollutants and to Bioaugmentation With Indigenous Strains
Cited by: 32
Author(s): Evdokia Syranidou, Sofie Thijs, Marina Avramidou, Nele Weyens, Danae Venieri, Isabel Pintelon, Jaco Vangronsveld, Nicolas Kalogerakis
Software Mentions: 4
Published: about 6 years ago

10.3389/fpls.2021.619634

Comparative Metabolite and Gene Expression Analyses in Combination With Gene Characterization Revealed the Patterns of Flavonoid Accumulation During Cistus creticus subsp. creticus Fruit Development
Cited by: 6
Author(s): Neda Aničić, Efstathia Patelou, Antigoni Papanikolaou, Anthi Kanioura, Camilla Valdesturli, Panagiotis Arapitsas, Marijana Škorić, Milan Dragićević, Uroš Gašić, Αθανάσιος Κουκουνάρας, Stefanos Kostas, Eirini Sarrou, Stefan Martens, Danijela Mišić, Angelos K. Kanellis
Software Mentions: 4
Published: over 3 years ago

10.7554/eLife.27786

Translation repression via modulation of the cytoplasmic poly(A)-binding protein in the inflammatory response
Cited by: 29
Author(s): Xu Zhang, Xiaoli Chen, Qiuying Liu, Shaojie Zhang, Wenqian Hu
Software Mentions: 4
Published: over 7 years ago

10.1080/07853890.2021.1918346

Effect of unfolded protein response on the immune infiltration and prognosis of transitional cell bladder cancer
Cited by: 3
Author(s): Xueting Yan, Min Chen, Chiying Xiao, Jia-Yin Fu, Xia Sun, Zuohuai Hu, Huaqiang Zhou
Software Mentions: 4
Published: almost 4 years ago

10.1186/s12870-016-0789-1

Transcriptome profiling of grapevine seedless segregants during berry development reveals candidate genes associated with berry weight
Cited by: 17
Author(s): Claudia Muñoz-Espinoza, Alex Di Génova, Juan Correa, Romina Silva, Alejandro Maass, Mauricio González-Agüero, Ariel Orellana, Patricio Hinrichsen
Software Mentions: 4
Published: over 8 years ago

10.3389/fmicb.2017.01943

An Investigation into Rumen Fungal and Protozoal Diversity in Three Rumen Fractions, during High-Fiber or Grain-Induced Sub-Acute Ruminal Acidosis Conditions, with or without Active Dry Yeast Supplementation
Cited by: 38
Author(s): Suzanne L. Ishaq, Ousama AlZahal, Nicola Walker, B.W. McBride
Software Mentions: 4
Published: about 7 years ago

10.3389/fcell.2020.562662

Identifying Mechanisms of Normal Cognitive Aging Using a Novel Mouse Genetic Reference Panel
Cited by: 6
Author(s): Amy R. Dunn, Niran Hadad, Sarah M. Neuner, Jigang Zhang, Vivek Philip, Logan Dumitrescu, Timothy J. Hohman, Jeremy H. Herskowitz, Kathryn A O’Connell, Catherine C. Kaczorowski
Software Mentions: 4
Published: about 4 years ago

10.1155/2020/2496582

Profiles of PD-1, PD-L1, PD-L2 in Gastric Cancer and Their Relation with Mutation, Immune Infiltration, and Survival
Cited by: 7
Author(s): Jingwei Liu, Hao Li, Liping Sun, Yuan Yuan, Chengzhong Xing
Software Mentions: 3
Published: over 4 years ago

10.1186/s40478-020-00907-8

Meta-analysis of human prefrontal cortex reveals activation of GFAP and decline of synaptic transmission in the aging brain
Cited by: 28
Author(s): Wasco Wruck, James Adjaye
Software Mentions: 3
Published: over 4 years ago

10.18632/aging.202328

Enrichment of branched chain amino acid transaminase 1 correlates with multiple biological processes and contributes to poor survival of IDH1 wild-type gliomas
Cited by: 8
Author(s): Yi Li, Xiaoguang Fan, Jiabo Li, Feng Yuan, Jian Zhao, Monica Nistér, Xuejun Yang
Software Mentions: 3
Published: almost 4 years ago

10.18632/aging.202625

FAM72 serves as a biomarker of poor prognosis in human lung adenocarcinoma
Cited by: 14
Author(s): Yilin Yu, Zhiping Wang, Qunhao Zheng, Jiancheng Li
Software Mentions: 3
Published: over 3 years ago

10.1016/j.ajhg.2021.06.002

Common haplotypes at the CFH locus and low-frequency variants in CFHR2 and CFHR5 associate with systemic FHR concentrations and age-related macular degeneration
Cited by: 25
Author(s): Laura Lorés‐Motta, Anna E. van Beek, Esther Willems, Judith Zandstra, Gerard van Mierlo, Alfred Einhaus, Jean-Luc Mary, Corinne Stucki, Björn Bakker, Carel B. Hoyng, Sascha Fauser, Simon J. Clark, Marien I. de Jonge, Everson Nogoceke, Elod Koertvely, Ilse Jongerius, Taco W. Kuijpers, Anneke I. den Hollander
Software Mentions: 3
Published: over 3 years ago

10.3390/ani11092527

Rumen Fermentation, Digestive Enzyme Activity, and Bacteria Composition between Pre-Weaning and Post-Weaning Dairy Calves
Cited by: 9
Author(s): Yangyi Hao, Changhong Guo, Yue Gong, Xiaoge Sun, Wei Wang, Yajing Wang, Yang Hu, Zhijun Cao, Shengli Li
Software Mentions: 3
Published: about 3 years ago

10.3390/ani10040712

Association between Rumen Microbiota and Marbling Score in Korean Native Beef Cattle
Cited by: 13
Author(s): Minseok Kim, Tansol Park, Jin Young Jeong, Youl-Chang Baek, Hyun-Jeong Lee
Software Mentions: 3
Published: over 4 years ago

10.3390/ani10112067

First Report of aacC5-aadA7Δ4 Gene Cassette Array and Phage Tail Tape Measure Protein on Class 1 Integrons of Campylobacter Species Isolated from Animal and Human Sources in Egypt
Cited by: 10
Author(s): Norhan K. Abd El-Aziz, Ahmed M. Ammar, Mona Hamdy, Adil A. Gobouri, Ehab Azab, Alaa H Sewid
Software Mentions: 3
Published: about 4 years ago

10.3390/antibiotics9100667

Promising Antibiofilm Agents: Recent Breakthrough against Biofilm Producing Methicillin-Resistant Staphylococcus aureus
Cited by: 43
Author(s): Marwa I. Abd El-Hamid, El-Sayed Y El-Naenaeey, Toka M Kandeel, Wael A. H. Hegazy, Rasha Mosbah, Majed S. Nassar, Muhammed A Bakhrebah, Wesam H. Abdulaal, Nabil A. Alhakamy, Mahmoud M. Bendary
Software Mentions: 3
Published: about 4 years ago

10.1093/aobpla/plaa026

Has agricultural intensification impacted maize root traits and rhizosphere interactions related to organic N acquisition?
Cited by: 6
Author(s): Jennifer E. Schmidt, Amisha T. Poret-Peterson, Carolyn J. Lowry, Amélie C. M. Gaudin
Software Mentions: 3
Published: over 4 years ago

10.1186/s13075-018-1752-3

The presence of anti-nuclear antibodies alone is associated with changes in B cell activation and T follicular helper cells similar to those in systemic autoimmune rheumatic disease
Cited by: 23
Author(s): Yuriy Baglaenko, Nan-Hua Chang, Sindhu R. Johnson, Waleed Hafiz, Kieran Manion, Dario Ferri, Babak Noamani, Dennisse Bonilla, Sina Rusta-Sellehy, Larissa Lisnevskaia, Earl D. Silverman, Arthur Bookman, Carolina Landolt-Marticorena, Joan E. Wither
Software Mentions: 3
Published: almost 6 years ago

10.1186/s12915-019-0715-8

The intestinal microbiota regulates host cholesterol homeostasis
Cited by: 114
Author(s): Tiphaine Le Roy, Emelyne Lécuyer, Benoît Chassaing, Moez Rhimi, Marie Lhomme, Samira Boudebbouze, Farid Ichou, Júlia Haro Barceló, Thierry Huby, Maryse Guérin, Philippe Giral, Emmanuelle Maguin, Nathalie Kapel, Philippe Gérard, Karine Clément, Philippe Lesnik
Software Mentions: 3
Published: almost 5 years ago

10.1186/s12885-021-08547-4

Correlation between vascular endothelial growth factor pathway and immune microenvironment in head and neck squamous cell carcinoma
Cited by: 4
Author(s): Chao Zhu, Liqun Gu, Zelong Liu, Li Jiang, Meiling Yao, Changyun Fang
Software Mentions: 3
Published: over 3 years ago

10.1186/s12862-017-1035-7

Evaluating the maintenance of disease-associated variation at the blood group-related gene B4galnt2 in house mice
Cited by: 7
Author(s): Marie Vallier, Maria Abou Chakra, Laura Hindersin, Miriam Linnenbrink, Arne Traulsen, John F. Baines
Software Mentions: 3
Published: over 7 years ago

10.1186/s12864-018-5317-2

Genome-wide association study for salinity tolerance at the flowering stage in a panel of rice accessions from Thailand
Cited by: 54
Author(s): Chakkree Lekklar, Monnat Pongpanich, Duangjai Suriya-arunroj, Aumnart Chinpongpanich, Helen Tsai, Luca Comai, Supachitra Chadchawan, Teerapong Buaboocha
Software Mentions: 3
Published: almost 6 years ago

10.1186/s12864-017-4316-z

Global gene expression reveals stress-responsive genes in Aspergillus fumigatus mycelia
Cited by: 25
Author(s): Hiroki Takahashi, Yoko Kusuya, Daisuke Hagiwara, Azusa Takahashi‐Nakaguchi, Kanae Sakai, Tohru Gonoi
Software Mentions: 3
Published: almost 7 years ago

10.1186/s12864-020-07093-w

Ontogeny of hepatic metabolism in mule ducks highlights different gene expression profiles between carbohydrate and lipid metabolic pathways
Cited by: 4
Author(s): William Massimino, Stéphane Davail, Aurélie Secula, Charlotte Andrieux, Marie-Dominique Bernadet, Tracy Pioche, Karine Ricaud, Karine Gontier, Mireille Morisson, Anne Collin, Stéphane Panserat, Marianne Houssier
Software Mentions: 3
Published: about 4 years ago

10.1186/s12920-021-00886-2

Identification of S1PR3 gene signature involved in survival of sepsis patients
Cited by: 3
Author(s): Feng Ai, Wei Ma, Reem Faraj, Gabriel T. Kelly, Stephen M. Black, Michael B. Fallon, Ting Wang
Software Mentions: 3
Published: almost 4 years ago

10.1186/s12866-019-1683-4

Comparative genomics of multidrug-resistant Enterococcus spp. isolated from wastewater treatment plants
Cited by: 27
Author(s): Haley Sanderson, Rodrigo Ortega Polo, Rahat Zaheer, Noriko Goji, Kingsley K. Amoako, R. Stephen Brown, Anna Majury, Steven N. Liss, Tim A. McAllister
Software Mentions: 3
Published: almost 5 years ago

10.1186/s12870-020-02674-z

Unlocking the relationships among population structure, plant architecture, growing season, and environmental adaptation in Henan wheat cultivars
Cited by: 3
Author(s): Jian Yang, Yanjie Zhou, Weiguo Hu, Yue Zhang, Yong Zhou, Yongxing Chen, Xicheng Wang, Hong Zhao, Tingjie Cao, Yong Li
Software Mentions: 3
Published: about 4 years ago

10.1186/s12870-020-02771-z

Genome-wide identification and expression analysis of the CLC gene family in pomegranate (Punica granatum) reveals its roles in salt resistance
Cited by: 10
Author(s): Cuiyu Liu, Yujie Zhao, Xueqing Zhao, Jianmei Dong, Zhaohe Yuan
Software Mentions: 3
Published: almost 4 years ago

10.1155/2020/9280841

Identification of <i>F5</i> as a Prognostic Biomarker in Patients with Gastric Cancer
Cited by: 12
Author(s): Yi Liu, Xiwen Liao, Yanding Qin, Xianwei Mo, Shuang Luo
Software Mentions: 3
Published: over 4 years ago

10.1186/s13568-020-01130-3

Identification of microflora related to growth performance in pigs based on 16S rRNA sequence analyses
Cited by: 9
Author(s): Xinjian Li, Mingyu Wang, Yansong Xue, Dongdong Duan, Cong Liu, Xuelei Han, Kejun Wang, Ruimin Qiao
Software Mentions: 3
Published: about 4 years ago

10.1155/2021/7561645

Identification of Key Genes and Immune Infiltrate in Nonalcoholic Steatohepatitis: A Bioinformatic Analysis
Cited by: 7
Author(s): Zhenyu Jiang, Yi Zhou, Lu Zhou, Shaowei Li, Bangmao Wang
Software Mentions: 3
Published: about 3 years ago

10.3390/biomedicines8110469

Dietary Vitamin B6 Deficiency Impairs Gut Microbiota and Host and Microbial Metabolites in Rats
Cited by: 28
Author(s): Shyamchand Mayengbam, Faye Chleilat, Raylene A. Reimer
Software Mentions: 3
Published: about 4 years ago

10.3390/biom9090429

The Role of Circular RNA CDR1as/ciRS-7 in Regulating Tumor Microenvironment: A Pan-Cancer Analysis
Cited by: 81
Author(s): Zou, Zihao Zheng, Deng Deng, Kan Yang, Weibo Xie, Tang Tang, Weibo Xie
Software Mentions: 3
Published: about 5 years ago

10.1186/s13068-016-0447-8

Consistent 1,3-propanediol production from glycerol in mixed culture fermentation over a wide range of pH
Cited by: 57
Author(s): Roman Moscoviz, Eric Trably, Nicolas Bernet
Software Mentions: 3
Published: almost 9 years ago

10.1002/brb3.1905

Resting‐state default mode network connectivity in young individuals with Down syndrome
Cited by: 14
Author(s): María Dolores Figueroa‐Jimenez, Cristina Cañete‐Massé, María Carbó‐Carreté, Daniel Zarabozo‐Hurtado, Maribel Peró‐Cebollero, José Guadalupe Salazar Estrada, Joan Guàrdia‐Olmos
Software Mentions: 3
Published: about 4 years ago

10.1093/braincomms/fcab082

Epigenetic predictors of lifestyle traits applied to the blood and brain
Cited by: 7
Author(s): Danni A Gadd, Anna J. Stevenson, Robert F. Hillary, Daniel L. McCartney, Nicola Wrobel, Sarah McCafferty, Lee Murphy, Tom C. Russ, Sarah E. Harris, Paul Redmond, Adele M. Taylor, Colin Smith, Jamie Rose, Tracey Millar, Tara L. Spires‐Jones, Simon R. Cox, Riccardo E. Marioni
Software Mentions: 3
Published: over 3 years ago

10.1093/braincomms/fcab106

Diffusion models reveal white matter microstructural changes with ageing, pathology and cognition
Cited by: 28
Author(s): Sheelakumari Raghavan, Robert I. Reid, Scott A. Przybelski, Timothy G. Lesnick, Jonathan Graff‐Radford, Christopher G. Schwarz, David S. Knopman, Michelle M. Mielke, Mary M. Machulda, Ronald C. Petersen, Clifford R. Jack, Prashanthi Vemuri
Software Mentions: 3
Published: over 3 years ago

10.1186/s12935-020-01738-2

Decreased expression of METTL14 predicts poor prognosis and construction of a prognostic signature for clear cell renal cell carcinoma
Cited by: 19
Author(s): Yi Wang, Rong Cong, Shouyong Liu, Bingye Zhu, Qianwei Xing, Qianwei Xing
Software Mentions: 3
Published: almost 4 years ago

10.3390/life11070619

Expression Status and Prognostic Value of m6A RNA Methylation Regulators in Lung Adenocarcinoma
Cited by: 3
Author(s): Xiuhong Li, Zian Feng, Rui Wang, Jie Hu, Xiaodong He, Zuojun Shen
Software Mentions: 3
Published: over 3 years ago

10.1590/0074-02760190364

Human acute Chagas disease: changes in factor VII, activated protein C and hepatic enzymes from patients of oral outbreaks in Pará State (Brazilian Amazon)
Cited by: 6
Author(s): Valéria Regina Cavalcante dos Santos, Dina Antunes, Dilma do Socorro Moraes de Souza, Otacílio C. Moreira, Igor Campos de Almeida Lima, Désio Aurélio Farias-de-Oliveira, João Pedro Lobo, Ernesto de Meis, José Rodrigues Coura, Wilson Savino, Ângela Cristina Veríssimo Junqueira, Juliana de Meis
Software Mentions: 3
Published: almost 5 years ago

10.1186/s40168-018-0405-8

Crawling-induced floor dust resuspension affects the microbiota of the infant breathing zone
Cited by: 36
Author(s): Heidi Hyytiäinen, Balamuralikrishna Jayaprakash, Pirkka V. Kirjavainen, Sampo Saari, Rauno Holopainen, Jorma Keskinen, Kaarle Hämeri, Anne Hyvärinen, Brandon E. Boor, Martin Täubel
Software Mentions: 3
Published: almost 7 years ago

10.1186/s40168-017-0373-4

The gut mycobiome of the Human Microbiome Project healthy cohort
Cited by: 526
Author(s): Andrea K. Nash, Thomas A. Auchtung, Matthew C. Wong, Daniel P. Smith, Jonathan R. Gesell, Matthew C. Ross, Christopher J. Stewart, Ginger Metcalf, Donna M. Muzny, Richard A. Gibbs, Nadim J. Ajami, Joseph F. Petrosino
Software Mentions: 3
Published: almost 7 years ago

10.3390/microorganisms9071516

Impact of Landscape on Host–Parasite Genetic Diversity and Distribution Using the Puumala orthohantavirus–Bank Vole System
Cited by: 1
Author(s): Maria Razzauti, Guillaume Castel, Jean-François Cosson
Software Mentions: 3
Published: over 3 years ago

10.3390/microorganisms7120645

Profiling the Oral Microbiome and Plasma Biochemistry of Obese Hyperglycemic Subjects in Qatar
Cited by: 13
Author(s): Muhammad Umar Sohail, Mohamed A. Elrayess, Asma Al Thani, Maha Al-Asmakh, Hadi M. Yassine
Software Mentions: 3
Published: almost 5 years ago

10.1186/s13041-015-0104-3

Brain transcriptome profiles in mouse model simulating features of post-traumatic stress disorder
Cited by: 41
Author(s): Seid Muhie, Aarti Gautam, James L. Meyerhoff, Nabarun Chakraborty, Rasha Hammamieh, Marti Jett
Software Mentions: 3
Published: over 9 years ago

10.3390/molecules26051340

Metabolome-Based Discrimination Analysis of Five Lilium Bulbs Associated with Differences in Secondary Metabolites
Cited by: 4
Author(s): Ying Kong, Huan Wang, Lixin Lang, Xiaoying Dou, Jinrong Bai
Software Mentions: 3
Published: over 3 years ago

10.3390/molecules24142582

Comprehensive Chemical Profiling and Multidirectional Biological Investigation of Two Wild Anthemis Species (Anthemis tinctoria var. Pallida and A. cretica subsp. tenuiloba): Focus on Neuroprotective Effects
Cited by: 22
Author(s): Giustino Orlando, Gökhan Zengin, Claudio Ferrante, Maurizio Ronci, Lucia Recinella, İsmail Şenkardeş, Reneta Gevrenova, Dimitrina Zheleva‐Dimitrova, Annalisa Chiavaroli, Sheila Leone, Simonetta Cristina Di Simone, Luigi Brunetti, Marie Carene Nancy Picot-Allain, Mohamad Fawzi Mahomoodally, Kouadio Ibrahime Sinan, Luigi Menghini
Software Mentions: 3
Published: over 5 years ago

10.3390/vaccines8020225

Uncovering Distinct Primary Vaccination-Dependent Profiles in Human Bordetella pertussis Specific CD4+ T-Cell Responses Using a Novel Whole Blood Assay
Cited by: 10
Author(s): Eleonora E. Lambert, Véronique Corbière, Jacqueline A. M. van Gaans-van den Brink, M. Duijst, Prashanna Balaji Venkatasubramanian, Elles Simonetti, Martijn Huynen, Dimitri Diavatopoulos, Pauline Versteegen, Guy A. M. Berbers, Françoise Mascart, Cécile A. C. M. van
Software Mentions: 3
Published: over 4 years ago

10.3390/pathogens9010005

Prevalence, Pathogenicity, Virulence, Antibiotic Resistance, and Phylogenetic Analysis of Biofilm-Producing Listeria monocytogenes Isolated from Different Ecological Niches in Egypt: Food, Humans, Animals, and Environment
Cited by: 18
Author(s): Kamelia M. Osman, Anthony D. Kappell, Edward M. Fox, Ahmed Orabi, Ahmed Samir
Software Mentions: 3
Published: almost 5 years ago

10.7717/peerj.11615

Transcriptome analysis associated with polysaccharide synthesis and their antioxidant activity in <i>Cyclocarya paliurus</i> leaves of different developmental stages
Cited by: 5
Author(s): Weida Lin, Huanwei Chen, Jianmei Wang, Yongli Zheng, Qiuwei Lu, Ziping Zhu, Na Li, Zexin Jin, Junmin Li, Hongfei Lü
Software Mentions: 3
Published: over 3 years ago

10.3390/ph14090898

RTK25: A Comprehensive Molecular Profiling Strategy in Cholangiocarcinoma Using an Integrated Bioinformatics Approach
Cited by: 4
Author(s): Brinda Balasubramanian, Simran Venkatraman, Tavan Janvilisri, Tuangporn Suthiphongchai, Siriporn Jitkaew, Jittiyawadee Sripa, Rutaiwan Tohtong
Software Mentions: 3
Published: about 3 years ago

10.1186/s13007-020-00657-7

3D characterization of walnut morphological traits using X-ray computed tomography
Cited by: 9
Author(s): Anthony Bernard, Sherif Hamdy, Laurence Le Corre, Elisabeth Dirlewanger, Fabrice Lheureux
Software Mentions: 3
Published: about 4 years ago

10.34133/2020/3723916

The Use of High-Throughput Phenotyping for Assessment of Heat Stress-Induced Changes in Arabidopsis
Cited by: 21
Author(s): Ge Gao, Mark Tester, Magdalena Julkowska
Software Mentions: 3
Published: almost 5 years ago

10.3390/plants10010024

Confirmation and Fine Mapping of the Resistance Locus Ren9 from the Grapevine Cultivar ‘Regent’
Cited by: 19
Author(s): Daniel Zendler, Reinhard Töpfer, Eva Zyprian
Software Mentions: 3
Published: almost 4 years ago

10.3390/plants10040798

Genome-Wide Association Study of Local Thai Indica Rice Seedlings Exposed to Excessive Iron
Cited by: 2
Author(s): Reunreudee Kaewcheenchai, Phanchita Vejchasarn, Kousuke Hanada, Kazumasa Shirai, Chatchawan Jantasuriyarat, Piyada Juntawong
Software Mentions: 3
Published: over 3 years ago

10.3390/plants10071425

Responses of Grain Yield and Yield Related Parameters to Post-Heading Low-Temperature Stress in Japonica Rice
Cited by: 11
Author(s): Iftikhar Ali, Liang Tang, Junjie Dai, Min Kang, Aqib Mahmood, Wei Wang, Bing Liu, Leilei Liu, Weixing Cao
Software Mentions: 3
Published: over 3 years ago

10.1371/journal.pcbi.1008719

Mechanical coupling in the nitrogenase complex
Cited by: 6
Author(s): Qi Huang, Monika Tokmina‐Lukaszewska, Lewis E. Johnson, Hayden Kallas, Bojana Ginovska, John W. Peters, Lance C. Seefeldt, Brian Bothner, Simone Raugei
Software Mentions: 3
Published: over 3 years ago

10.1371/journal.pntd.0009658

Describing the intestinal microbiota of Holstein Fasciola-positive and -negative cattle from a hyperendemic area of fascioliasis in central Colombia
Cited by: 5
Author(s): Angie Ramírez, Giovanny Herrera, Marina Muñoz, Laura Vega, Lissa Cruz-Saavedra, Diego García-Corredor, Martín Orlando Pulido-Medellín, Diana María Bulla-Castañeda, Julio César Giraldo, María Consuelo Bernal, José Fernández-Manrique, Luis R. Vásquez-Arteaga, Juan David Ramírez
Software Mentions: 3
Published: over 3 years ago

10.1371/journal.pone.0256784

Immunometabolic signatures predict risk of progression to sepsis in COVID-19
Cited by: 19
Author(s): Ana Sofía Herrera-Van Oostdam, Julio Enrique Castañeda-Delgado, Juan José Oropeza-Valdez, Juan Carlos Borrego, Joel Monárrez‐Espino, Jiamin Zheng, Rupasri Mandal, Lun Zhang, Elizabeth Soto-Guzmán, Julio César Fernández-Ruiz, Fátima de Lourdes Ochoa-González, Flor María Trejo Medinilla, Jesús Adrián López, David S. Wishart, José Antonio Enciso-Moreno, Yamilé López‐Hernández
Software Mentions: 3
Published: about 3 years ago

10.1371/journal.pone.0237544

Longitudinal monitoring of honey bee colonies reveals dynamic nature of virus abundance and indicates a negative impact of Lake Sinai virus 2 on colony health
Cited by: 26
Author(s): Cayley Faurot-Daniels, William Glenny, Katie F. Daughenbaugh, Alexander J. McMenamin, Laura A. Burkle, Michelle L. Flenniken
Software Mentions: 3
Published: about 4 years ago

10.1371/journal.pone.0231367

Phylogenetic diversity of 200+ isolates of the ectomycorrhizal fungus Cenococcum geophilum associated with Populus trichocarpa soils in the Pacific Northwest, USA and comparison to globally distributed representatives
Cited by: 5
Author(s): Jessica M. Vélez, Reese M. Morris, Rytas Vilgalys, Jessy Labbé, Christopher W. Schadt
Software Mentions: 3
Published: almost 4 years ago

10.1371/journal.pone.0197464

Polyclonal human antibodies against glycans bearing red meat-derived non-human sialic acid N-glycolylneuraminic acid are stable, reproducible, complex and vary between individuals: Total antibody levels are associated with colorectal cancer risk
Cited by: 42
Author(s): Annie N. Samraj, Kimberly A. Bertrand, Robert Luben, Zahra Khedri, Hai Yu, Dong Van Nguyen, Christopher Gregg, Sandra Díaz, Sherilyn Sawyer, Xi Chen, Heather Eliassen, Vered Padler‐Karavani, Kana Wu, Kay Tee Khaw, Walter C. Willett, Ajit Varki
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0239345

Prestige and homophily predict network structure for social learning of medicinal plant knowledge
Cited by: 6
Author(s): Matthew O. Bond, Orou G. Gaoue
Software Mentions: 3
Published: about 4 years ago

10.1371/journal.pone.0221826

Genome wide genetic dissection of wheat quality and yield related traits and their relationship with grain shape and size traits in an elite × non-adapted bread wheat cross
Cited by: 36
Author(s): Ajay Kumar, Éder Eduardo Mantovani, Şenay Şimşek, Shalu Jain, Elias M. Elias, Maryati Mohamed
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pone.0217431

Comparison of bacterial community structure and potential functions in hypoxic and non-hypoxic zones of the Changjiang Estuary
Cited by: 27
Author(s): Dongmei Wu, Qiu-Ping Dai, Xuezhu Liu, Yingping Fan, Jianxin Wang
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0238214

Assessing the spread of COVID-19 in Brazil: Mobility, morbidity and social vulnerability
Cited by: 64
Author(s): Flávio Codeço Coelho, Raquel Martins Lana, Oswaldo Gonçalves Cruz, Daniel Antunes Maciel Villela, Leonardo Soares Bastos, Ana Pastore y Piontti, Jessica T. Davis, Alessandro Vespignani, Cláudia Torres Codeço, Marcelo Ferreira da Costa Gomes
Software Mentions: 3
Published: about 4 years ago

10.1371/journal.pone.0238873

Comparative transcriptome analysis reveals key genes potentially related to organic acid and sugar accumulation in loquat
Cited by: 6
Author(s): Jun‐Bo Yang, Jing Zhang, Xianqian Niu, Xuelian Zheng, Xu Chen, Guohua Zheng, Jincheng Wu
Software Mentions: 3
Published: over 3 years ago

10.1371/journal.pone.0235073

The assessment of epigenetic diversity, differentiation, and structure in the ‘Fuji’ mutation line implicates roles of epigenetic modification in the occurrence of different mutant groups as well as spontaneous mutants
Cited by: 9
Author(s): Xuezhu Du, Han Li, Minxiao Liu, Xueqing Liu, Zhongwu Jiang, Lingling Zhao, Yin Tang, Yanxia Sun, Xueyong Zhang, Daliang Liu, Lingyun Song
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0187310

Evaluation of miRNA-196a2 and apoptosis-related target genes: ANXA1, DFFA and PDCD4 expression in gastrointestinal cancer patients: A pilot study
Cited by: 32
Author(s): Manal S. Fawzy, Eman A. Toraih, Afaf T. Ibrahiem, Hala Abdeldayem, Amany O. Mohamed, Mohamed M. Abdel-Daim
Software Mentions: 3
Published: about 7 years ago

10.1371/journal.pone.0180210

Comparison of soil sampling and analytical methods for asbestos at the Sumas Mountain Asbestos Site—Working towards a toolbox for better assessment
Cited by: 11
Author(s): Julie Wroble, Timothy Frederick, Alicia M. Frame, Daniel A. Vallero
Software Mentions: 3
Published: over 7 years ago

10.3390/cancers12071894

Pre-Treatment T2-WI Based Radiomics Features for Prediction of Locally Advanced Rectal Cancer Non-Response to Neoadjuvant Chemoradiotherapy: A Preliminary Study
Cited by: 35
Author(s): Bianca Petresc, Andrei Lebovici, Cosmin Caraiani, Diana Feier, Florin Graur, Mircea Buruian
Software Mentions: 3
Published: over 4 years ago

10.1016/j.cell.2020.09.038

Antigen-Specific Adaptive Immunity to SARS-CoV-2 in Acute COVID-19 and Associations with Age and Disease Severity
Cited by: 1,368
Author(s): Carolyn Rydyznski Moderbacher, Sydney I. Ramirez, Jennifer M. Dan, Alba Grifoni, Kathryn M. Hastie, Daniela Weiskopf, Simon Bélanger, Robert G. Abbott, Christina Kim, Jinyong Choi, Yu Kato, Eleanor G. Crotty, Cheryl Kim, Stephen A. Rawlings, José Mateus, Long Ping Victor Tse, April Frazier, Ralph S. Baric, Bjoern Peters, Jason A. Greenbaum, Erica Ollmann Saphire, Davey M Smith, Alessandro Sette, Shane Crotty
Software Mentions: 3
Published: about 4 years ago

Projects: cran: corrplot

Papers Mentioning corrplot 1,077