cran: corrplot | Projects | Ecosyste.ms: Papers

10.1002/pld3.41

High‐fidelity detection of crop biomass quantitative trait loci from low‐cost imaging in the field
Cited by: 11
Author(s): Darshi Banan, Rachel Paul, Max Feldman, Mark W. Holmes, Hannah Schlake, Ivan Baxter, Hui Jiang, Andrew D. B. Leakey
Software Mentions: 6
Published: almost 7 years ago

10.3389/fcell.2021.640476

A Comprehensive Investigation to Reveal the Relationship Between Plasmacytoid Dendritic Cells and Breast Cancer by Multiomics Data Analysis
Cited by: 8
Author(s): Sai Tian, Yan Li, Lu Fu, Zhen Zhang, Jinbo Zhang, Guofeng Meng, Weidong Zhang
Software Mentions: 6
Published: over 3 years ago

10.7717/peerj.7141

Comparison of soil bacterial community and functional characteristics following afforestation in the semi-arid areas
Cited by: 27
Author(s): Jiaojiao Deng, Yan Zhang, You Yin, Xu Zhu, Wenxu Zhu, Yongbin Zhou
Software Mentions: 6
Published: over 5 years ago

10.3389/fmicb.2020.01405

Denosumab Regulates Gut Microbiota Composition and Cytokines in Dinitrobenzene Sulfonic Acid (DNBS)-Experimental Colitis
Cited by: 7
Author(s): Azin Khafipour, Nour Eissa, Peris M. Munyaka, Mohammad Fazle Rabbi, Kunal Kapoor, Laëtitia Kermarrec, Ehsan Khafipour, Çharles N. Bernstein, Jean–Eric Ghia
Software Mentions: 6
Published: over 4 years ago

10.5194/amt-11-4605-2018

Long-term evaluation of air sensor technology under ambient conditions in Denver, Colorado
Cited by: 51
Author(s): Stephen N Feinberg, Ron Williams, Gayle Hagler, Joshua Rickard, Ryan Brown, Daniel Garver, Greg Harshfield, Phillip Stauffer, Eric C. Mattson, Robert Judge, Sam Garvey
Software Mentions: 6
Published: over 6 years ago

10.1155/2020/5816763

Screening of T Cell-Related Long Noncoding RNA-MicroRNA-mRNA Regulatory Networks in Non-Small-Cell Lung Cancer
Cited by: 6
Author(s): Jinping Duan, Yuefen Pan, Yang Xi, Liping Zhong, Jia Yin, Jingying Xu, Zhuang Jing, Shuwen Han
Software Mentions: 6
Published: about 4 years ago

10.1128/mBio.01007-20

The Ribbon-Helix-Helix Domain Protein CdrS Regulates the Tubulin Homolog <i>ftsZ2</i> To Control Cell Division in Archaea
Cited by: 15
Author(s): Cynthia L. Darnell, Jenny Z. Zheng, Sean Wilson, R Bertoli, Alexandre W. Bisson‐Filho, Edward B. Garner, Amy K. Schmid
Software Mentions: 6
Published: about 4 years ago

10.3389/fcvm.2021.696321

Bioinformatics and Immune Infiltration Analyses Reveal the Key Pathway and Immune Cells in the Pathogenesis of Hypertrophic Cardiomyopathy
Cited by: 11
Author(s): Xuzhe Zhang, Si Zhang, Tingting Tang, Xiang Cheng
Software Mentions: 6
Published: about 3 years ago

10.3389/fimmu.2021.647688

Epigenetic Features of HIV-Induced T-Cell Exhaustion Persist Despite Early Antiretroviral Therapy
Cited by: 12
Author(s): Geneviève Martin, Debattama R. Sen, Matthew Pace, Nicola Robinson, Jodi Meyerowitz, Emily Adland, John Thornhill, Mathew Jones, Ane Ogbe, Lucia Parolini, Natalia Olejniczak, Panagiota Zacharopoulou, Helen Brown, Christian Willberg, Nneka Nwokolo, Julie Fox, Sarah Fidler, W. Nicholas Haining, John Frater
Software Mentions: 5
Published: over 3 years ago

10.3390/foods9121851

Austrian Raw-Milk Hard-Cheese Ripening Involves Successional Dynamics of Non-Inoculated Bacteria and Fungi
Cited by: 12
Author(s): Narciso M. Quijada, Stephan Schmitz‐Esser, Benjamin Zwirzitz, C. Guse, Cameron Strachan, Martin Wagner, Stefanie U. Wetzels, Evelyne Selberherr, Monika Dzieciol
Software Mentions: 5
Published: almost 4 years ago

10.3390/jpm10040271

Identification of Metabolic Biomarkers in Relation to Methotrexate Response in Early Rheumatoid Arthritis
Cited by: 13
Author(s): Helen R. Gosselt, Ittai B. Muller, Gerrit Jansen, Michel van Weeghel, Frédéric M. Vaz, Johanna M. W. Hazes, Sandra G. Heil, Robert de Jonge
Software Mentions: 5
Published: almost 4 years ago

10.1186/s12918-015-0204-9

Incorporating prior knowledge improves detection of differences in bacterial growth rate
Cited by: 9
Author(s): Lydia M Rickett, Nick Pullen, Matthew Hartley, Cyril Zipfel, Sophien Kamoun, József Baranyi, Richard J. Morris
Software Mentions: 5
Published: about 9 years ago

10.1186/s10020-021-00343-x

Long non-coding RNA profile study identifies a metabolism-related signature for colorectal cancer
Cited by: 19
Author(s): Yongqu Lu, Wendong Wang, Zhenzhen Liu, Junren Ma, Xin Zhou, Wei Fu
Software Mentions: 5
Published: over 3 years ago

10.3390/molecules26154588

Humic Acid Improves Zn Fertilization in Oxisols Successively Cultivated with Maize–Brachiaria
Cited by: 4
Author(s): Everton Geraldo de Morais, Carlos Alberto Silva, Keiji Jindo
Software Mentions: 5
Published: over 3 years ago

10.3945/ajcn.116.139980

What’s normal? Oligosaccharide concentrations and profiles in milk produced by healthy women vary geographically ,
Cited by: 268
Author(s): Michelle K. McGuire, Courtney L. Meehan, Mark A. McGuire, Janet E. Williams, James E. Foster, Daniel Sellen, Elizabeth Kamau-Mbuthia, Egidioh W. Kamundia, Samwel Mbugua, Sophie E. Moore, Andrew M. Prentice, Linda J. Kvist, Gloria E. Otoo, Sarah L Brooker, William J. Price, Bahman Shafii, Caitlyn Placek, Kimberly A. Lackey, Bianca Robertson, Susana Manzano, Lorena Ruíz, Juan M. Rodríguez, Rossina G. Pareja, Lars Bode
Software Mentions: 5
Published: over 7 years ago

10.18632/aging.202739

Oral administration of Akkermansia muciniphila elevates systemic antiaging and anticancer metabolites
Cited by: 67
Author(s): Claudia Grajeda‐Iglesias, Sylvère Durand, Romain Daillère, Kristina Iribarren, Fabien Lemaître, Lisa Derosa, Fanny Aprahamian, Noélie Bossut, Nitharsshini Nirmalathasan, Frank Madeo, Laurence Zitvogel, Guido Kroemer
Software Mentions: 5
Published: over 3 years ago

10.3389/fmicb.2020.00704

Effects of Drought-Tolerant Ea-DREB2B Transgenic Sugarcane on Bacterial Communities in Soil
Cited by: 18
Author(s): Xue Zhao, Yuke Jiang, Qi Liu, Hao Yang, Ziting Wang, Muqing Zhang
Software Mentions: 5
Published: over 4 years ago

10.3390/ijms21010145

Gene Copy Number and Post-Transductional Mechanisms Regulate TRAP1 Expression in Human Colorectal Carcinomas
Cited by: 3
Author(s): Michele Pietrafesa, Francesca Maddalena, Luciana Possidente, Valentina Condelli, Pietro Zoppoli, Valeria Li Bergolis, Maria Grazia Rodriquenz, Michele Aieta, Giulia Vita, Franca Esposito, Matteo Landriscina
Software Mentions: 5
Published: almost 5 years ago

10.1186/s12870-021-02967-x

GWAS of pod morphological and color characters in common bean
Cited by: 15
Author(s): Carmen García-Fernández, Ana Čampa, Alvaro Soler‐Garzón, Phillip N. Miklas, Juan José Ferreira Fernández
Software Mentions: 5
Published: over 3 years ago

10.3390/ijms21207720

A Bioinformatic Pipeline Places STAT5A as a miR-650 Target in Poorly Differentiated Aggressive Breast Cancer
Cited by: 1
Author(s): Eric López-Huerta, Ezequiel M. Fuentes‐Pananá
Software Mentions: 5
Published: about 4 years ago

10.3389/fsufs.2019.00124

Landscape, Water Quality, and Weather Factors Associated With an Increased Likelihood of Foodborne Pathogen Contamination of New York Streams Used to Source Water for Produce Production
Cited by: 42
Author(s): Daniel Weller, Alexandra Belias, Hyatt Green, Sherry Roof, Martin Wiedmann
Software Mentions: 5
Published: almost 5 years ago

10.7554/eLife.62236

Identification of human glucocorticoid response markers using integrated multi-omic analysis from a randomized crossover trial
Cited by: 21
Author(s): Dimitrios Chantzichristos, Peder Svensson, Terence Garner, Camilla A M Glad, Brian R. Walker, Ragnhildur Bergthorsdottir, Oskar Ragnarsson, Penelope Trimpou, Roland H Stimson, Stina Willemoes Borresen, Ulla Feldt‐Rasmussen, Per‐Anders Jansson, Stanko Skrtic, Adam Stevens, Gudmundur Johannsson
Software Mentions: 5
Published: over 3 years ago

10.3390/microorganisms9010006

Diversity and Colonization Strategies of Endolithic Cyanobacteria in the Cold Mountain Desert of Pamir
Cited by: 10
Author(s): Nataliia Khomutovska, Asunción de los Rı́os, Iwona Jasser
Software Mentions: 5
Published: almost 4 years ago

10.2196/16077

Personalized Web-Based Cognitive Rehabilitation Treatments for Patients with Traumatic Brain Injury: Cluster Analysis
Cited by: 11
Author(s): Alejandro García-Rudolph, Alberto García-Molina, Eloy Opisso, Jose Maria Tormos Muñoz
Software Mentions: 5
Published: about 4 years ago

10.1186/s40168-020-00969-9

Associations between habitual diet, metabolic disease, and the gut microbiota using latent Dirichlet allocation
Cited by: 39
Author(s): Taylor A. Breuninger, Nina Wawro, Jakob Breuninger, Sandra Reitmeier, Thomas Clavel, Julia Six-Merker, Giulia Pestoni, Sabine Rohrmann, Wolfgang Rathmann, Annette Peters, Harald Grallert, Christa Meisinger, Dirk Haller, Jakob Linseisen
Software Mentions: 5
Published: over 3 years ago

10.1186/s12864-020-07114-8

Predicting and clustering plant CLE genes with a new method developed specifically for short amino acid sequences
Cited by: 12
Author(s): Zhe Zhang, Lei Liu, Melis Kücükoglu, Dongdong Tian, Robert M. Larkin, Xueping Shi, Bo Zheng
Software Mentions: 5
Published: about 4 years ago

10.1155/2020/9493256

Identification of CPT1A as a Prognostic Biomarker and Potential Therapeutic Target for Kidney Renal Clear Cell Carcinoma and Establishment of a Risk Signature of CPT1A-Related Genes
Cited by: 5
Author(s): Yingkun Xu, Guangzhen Wu, Xue Ma, Jianyi Li, Ningke Ruan, Zhe Zhang, Yalei Cao, Yougen Chen, Qi Zhang, Qinghua Xia
Software Mentions: 5
Published: almost 5 years ago

10.1177/2048872620923641

Pentraxin 3 in primary percutaneous coronary intervention for ST elevation myocardial infarction is associated with early irreversible myocardial damage
Cited by: 5
Author(s): Noreen Butt, Lena Kristin Bache-Mathiesen, Anastasia Ushakova, Jan Erik Nordrehaug, Senn-Erik Jensen, Peter Munk, Nicolás Danchin, Jean‐Luc Dubois‐Randé, HS Hansen, Franck Paganelli, Philippe Le Corvoisier, Hüseyin Firat, David Erlinge, Dan Atar, Alf Inge Larsen
Software Mentions: 5
Published: over 4 years ago

10.3389/fmicb.2021.656895

GABA Production by Human Intestinal Bacteroides spp.: Prevalence, Regulation, and Role in Acid Stress Tolerance
Cited by: 66
Author(s): Nize Otaru, Kun Ye, Denisa Mujezinovic, Laura Berchtold, Florentin Constancias, Fabián A. Cornejo, Adam Krzystek, Tomás de Wouters, Christian Braegger, Christophe Lacroix, Benoı̂t Pugin
Software Mentions: 5
Published: over 3 years ago

10.18632/aging.102706

Elevated lymphocyte specific protein 1 expression is involved in the regulation of leukocyte migration and immunosuppressive microenvironment in glioblastoma
Cited by: 16
Author(s): Ji Cao, Qing Guo, Gefei Guan, Chen Zhu, Cunyi Zou, Luyang Zhang, Wen Cheng, Guoli Wang, Cheng Peng, Anhua Wu, Guangyu Li
Software Mentions: 5
Published: almost 5 years ago

10.3389/fpls.2019.00511

Activity in the Arbuscular Mycorrhizal Hyphosphere Warning Neighbouring Plants
Cited by: 8
Author(s): Carmina Cabral, Bernd Wollenweber, Carla António, Sabine Ravnskov
Software Mentions: 5
Published: over 5 years ago

10.1101/2020.09.16.20196154

SARS-CoV-2 antibody signatures robustly predict diverse antiviral functions relevant for convalescent plasma therapy
Cited by: 20
Author(s): Harini Natarajan, Andrew R. Crowley, Savannah E. Butler, Shiwei Xu, Joshua A. Weiner, Evan M. Bloch, Kirsten Littlefield, Wendy Wieland-Alter, Ruth I. Connor, Peter F. Wright, Sarah E. Benner, Tania S. Bonny, Oliver Laeyendecker, David J. Sullivan, Shmuel Shoham, Thomas C. Quinn, H. Benjamin Larman, Arturo Casadevall, Andrew Pekosz, Andrew D. Redd, Aaron A.R. Tobian, Margaret E. Ackerman
Software Mentions: 5
Published: about 4 years ago

10.1002/mbo3.1133

A low‐cost pipeline for soil microbiome profiling
Cited by: 5
Author(s): Anita Bollmann‐Giolai, Michael Giolai, Darren Heavens, Iain C. Macaulay, Jacob G. Malone, Matt Clark
Software Mentions: 5
Published: almost 4 years ago

10.3389/fgene.2020.00994

m6A RNA Methylation Regulators Participate in the Malignant Progression and Have Clinical Prognostic Value in Lung Adenocarcinoma
Cited by: 42
Author(s): Fangwei Li, Hong Wang, Huirong Huang, Li Zhang, Dan Wang, Yixin Wan
Software Mentions: 5
Published: about 4 years ago

10.3390/cancers12061531

Mass Spectrometric Comparison of HPV-Positive and HPV-Negative Oropharyngeal Cancer
Cited by: 6
Author(s): M. Wurlitzer, Nikolaus Möckelmann, Malte Kriegs, Maren Vens, Maryam Omidi, Konstantin Hoffer, Clara von Bargen, Christina Möller‐Koop, Melanie Witt, Conrad Droste, Agnes Oetting, Hannes Petersen, Chia‐Jung Busch, Adrian Münscher, Hartmut Schlüter, Till S. Clauditz, Thorsten Rieckmann
Software Mentions: 5
Published: over 4 years ago

10.1128/mBio.00765-21

Markers of Polyfunctional SARS-CoV-2 Antibodies in Convalescent Plasma
Cited by: 51
Author(s): Harini Natarajan, Andrew R. Crowley, Savannah E. Butler, Shiwei Xu, Joshua A. Weiner, Evan M. Bloch, Kirsten Littlefield, Wendy Wieland-Alter, Ruth I. Connor, Peter F. Wright, Sarah E. Benner, Tania S. Bonny, Oliver Laeyendecker, David J. Sullivan, Shmuel Shoham, Thomas C. Quinn, H. Benjamin Larman, Arturo Casadevall, Andrew Pekosz, Andrew D. Redd, Aaron A.R. Tobian, Margaret E. Ackerman
Software Mentions: 5
Published: over 3 years ago

10.1128/mSphere.00005-17

Divergent Relationships between Fecal Microbiota and Metabolome following Distinct Antibiotic-Induced Disruptions
Cited by: 28
Author(s): Jocelyn M. Choo, Tokuwa Kanno, Nur Masirah M. Zain, Lex E. X. Leong, Guy C. J. Abell, Julie Keeble, Kenneth D. Bruce, A. James Mason, Geraint B. Rogers
Software Mentions: 5
Published: over 7 years ago

10.3390/cancers13092000

Lipidomics as a Diagnostic Tool for Prostate Cancer
Cited by: 21
Author(s): Magdalena Buszewska-Forajta, Paweł Pomastowski, Fernanda Monedeiro, Justyna Walczak-Skierska, Marcin Markuszewski, Marcin Matuszewski, Michał J. Markuszewski
Software Mentions: 5
Published: over 3 years ago

10.1038/s41598-021-98075-9

Distinguishing feature of gut microbiota in Tibetan highland coronary artery disease patients and its link with diet
Cited by: 14
Author(s): Yu-Lan Ma, Lulu Zhu, Zhuo Ma, Zhong-Shan Gao, Yumiao Wei, Youlu Shen, Lin Liu, Xingli Liu, Ming Ren
Software Mentions: 5
Published: about 3 years ago

10.3390/metabo10050212

An NMR-Based Approach to Identify Urinary Metabolites Associated with Acute Physical Exercise and Cardiorespiratory Fitness in Healthy Humans—Results of the KarMeN Study
Cited by: 10
Author(s): Sina Kistner, M Rist, Maik Döring, Claudia Dörr, Rainer Neumann, Sascha Härtel, Achim Bub
Software Mentions: 5
Published: over 4 years ago

10.3389/fpls.2020.604938

Multiple Small-Effect Alleles of Indica Origin Enhance High Iron-Associated Stress Tolerance in Rice Under Field Conditions in West Africa
Cited by: 8
Author(s): Giovanni Melandri, Mouritala Sikirou, Juan David Arbelaez, Afeez Shittu, Vimal Kumar Semwal, Kadougoudiou Abdourasmane Konate, A. T. Maji, Steven A. Ngaujah, Inoussa Akintayo, Vishnu Govindaraj, Yuxin Shi, Francisco Agosto-Perez, Anthony J. Greenberg, G. N. Atlin, R. Venuprasad, Susan R. McCouch
Software Mentions: 5
Published: almost 4 years ago

10.1038/s41598-021-98300-5

Quantifying and predicting antimicrobials and antimicrobial resistance genes in waterbodies through a holistic approach: a study in Minnesota, United States
Cited by: 4
Author(s): Irene Bueno, Amanda Beaudoin, William A. Arnold, Taegyu Kim, Lara Frankson, Timothy M. LaPara, Kaushi S. T. Kanankege, Kristine H. Wammer, Randall S. Singer
Software Mentions: 5
Published: about 3 years ago

10.3389/fphys.2017.00535

The Effects of Weaning Methods on Gut Microbiota Composition and Horse Physiology
Cited by: 52
Author(s): Núria Mach, Aline Foury, Sandra Kittelmann, Fabrice Reigner, Marco Moroldo, María Ballester, Diane Esquerré, Julie Rivière, Guillaume Sallé, Philippe Gérard, Marie‐Pierre Moisan, Léa Lansade
Software Mentions: 5
Published: over 7 years ago

10.1111/ele.13497

Plant community composition steers grassland vegetation via soil legacy effects
Cited by: 68
Author(s): Robin Heinen, S. Emilia Hannula, Jonathan R. De Long, Martine Huberty, Renske Jongen, Anna M. Kielak, Katja Steinauer, Feng Zhu, T. Martijn Bezemer
Software Mentions: 5
Published: over 4 years ago

10.18632/aging.102871

Prognostic value of immune-related genes in the tumor microenvironment of lung adenocarcinoma and lung squamous cell carcinoma
Cited by: 52
Author(s): Yan Qu, Bo Cheng, Ningsheng Shao, Yibin Jia, Qingxu Song, Bingxu Tan, Jianbo Wang
Software Mentions: 5
Published: over 4 years ago

10.3389/fgene.2021.658323

Discovery and Validation of Key Biomarkers Based on Immune Infiltrates in Alzheimer’s Disease
Cited by: 22
Author(s): Zhuohang Liu, Hang Li, Shuyi Pan
Software Mentions: 5
Published: over 3 years ago

10.3389/fgene.2020.575776

TMEM205 Is an Independent Prognostic Factor and Is Associated With Immune Cell Infiltrates in Hepatocellular Carcinoma
Cited by: 13
Author(s): Jiawei Rao, Xukun Wu, Xiaozhuan Zhou, Ronghai Deng, Yi Ma
Software Mentions: 5
Published: about 4 years ago

10.1371/journal.pone.0251216

Coagulation disorders in patients with severe hemophagocytic lymphohistiocytosis
Cited by: 8
Author(s): Sandrine Valade, Bérangère S. Joly, Agnès Veyradier, Jehane Fadlallah, Lara Zafrani, Virginie Lemiale, Amélie Launois, Alain Stépanian, Lionel Galicier, Claire Fieschi, Adrien Mirouse, Jean Jacques Tudesq, Anne‐Claire Leprêtre, Élie Azoulay, Michaël Darmon, Eric Mariotte
Software Mentions: 5
Published: over 3 years ago

10.18632/aging.202896

Bioinformatic analyses and experimental validation of the role of m6A RNA methylation regulators in progression and prognosis of adrenocortical carcinoma
Cited by: 13
Author(s): Fangshi Xu, Yawen Guan, Yubo Ma, Li Xue, Peng Zhang, Xiaojie Yang, Tie Chong
Software Mentions: 5
Published: over 3 years ago

10.3389/fonc.2019.01083

LCTL Is a Prognostic Biomarker and Correlates With Stromal and Immune Infiltration in Gliomas
Cited by: 12
Author(s): Jun Su, Qianquan Ma, Wenyong Long, Hailin Tang, Changwu Wu, Mei Luo, Xiangyu Wang, Kai Xiao, Li Yang, Qian Xiao, Chi Zhang, Haoyu Li, Qing Liu
Software Mentions: 5
Published: about 5 years ago

10.3389/fncel.2020.00245

A Primer on Constructing Plasticity Phenotypes to Classify Experience-Dependent Development of the Visual Cortex
Cited by: 2
Author(s): Justin L. Balsor, Dezi Ahuja, David Jones, Kathryn Murphy
Software Mentions: 5
Published: about 4 years ago

10.1371/journal.pone.0241842

Genetic and physiological traits for internal phosphorus utilization efficiency in rice
Cited by: 11
Author(s): Getnet Dino Adem, Yoshiaki Ueda, Patrick E. Hayes, Matthias Wissuwa
Software Mentions: 5
Published: about 4 years ago

10.3389/fncel.2018.00106

Automated Morphological Analysis of Microglia After Stroke
Cited by: 155
Author(s): Steffanie Heindl, Benno Gesierich, Corinne Benakis, Gemma Llovera, Marco Duering, Arthur Liesz
Software Mentions: 5
Published: over 6 years ago

10.1186/s12936-019-2659-4

A fast and cost-effective microsampling protocol incorporating reduced animal usage for time-series transcriptomics in rodent malaria parasites
Cited by: 7
Author(s): Abhinay Ramaprasad, Amit Kumar Subudhi, Richard Culleton, Arnab Pain
Software Mentions: 5
Published: almost 6 years ago

10.3389/fonc.2021.629333

GEO Data Mining Identifies OLR1 as a Potential Biomarker in NSCLC Immunotherapy
Cited by: 6
Author(s): Bin Liu, Ziyu Wang, Meng Gu, Cong Zhao, Teng Ma, Jinghui Wang
Software Mentions: 5
Published: over 3 years ago

10.3389/fcimb.2021.579766

Preterm Birth Is Correlated With Increased Oral Originated Microbiome in the Gut
Cited by: 14
Author(s): Yin Chen, Jingrui Chen, Xiaoyi Wu, Ye-Ling Liu, He Qian, Ying Cao, Yie Huang, Sisun Liu
Software Mentions: 5
Published: over 3 years ago

10.1002/cam4.4180

Identification of a novel 10 immune‐related genes signature as a prognostic biomarker panel for gastric cancer
Cited by: 9
Author(s): Tingna Chen, Chaogang Yang, Rongzhang Dou, Bin Xiong
Software Mentions: 5
Published: over 3 years ago

10.1038/s41598-021-86919-3

Accessible chromatin reveals regulatory mechanisms underlying cell fate decisions during early embryogenesis
Cited by: 3
Author(s): Tongqiang Fan, Yajiang Huang
Software Mentions: 5
Published: over 3 years ago

10.3389/fonc.2020.554214

Screening and Identification of Prognostic Tumor-Infiltrating Immune Cells and Genes of Endometrioid Endometrial Adenocarcinoma: Based on The Cancer Genome Atlas Database and Bioinformatics
Cited by: 9
Author(s): Bingnan Chen, Di Wang, Jiapo Li, Yue Hou, Chong Qiao
Software Mentions: 5
Published: almost 4 years ago

10.3389/fonc.2020.00368

Expression Profile and Prognostic Values of HOXA Family Members in Laryngeal Squamous Cell Cancer
Cited by: 20
Author(s): Jinyun Li, Meng Ye, Chongchang Zhou
Software Mentions: 5
Published: over 4 years ago

10.1038/s41598-021-90145-2

An in-depth analysis of the mitochondrial phylogenetic landscape of Cambodia
Cited by: 5
Author(s): Anita Kloss‐Brandstätter, Monika Summerer, David Horst, Basil A. Horst, Gertraud Streiter, Julia Raschenberger, Florian Kronenberg, Torpong Sanguansermsri, Jürgen Horst, Hansi Weißensteiner
Software Mentions: 5
Published: over 3 years ago

10.1371/journal.pone.0161621

Evaluation of the Performance of Five Diagnostic Tests for Fasciola hepatica Infection in Naturally Infected Cattle Using a Bayesian No Gold Standard Approach
Cited by: 54
Author(s): Stella Mazeri, Neil Sargison, Robert F. Kelly, Barend M. deC. Bronsvoort, Ian Handel
Software Mentions: 5
Published: about 8 years ago

10.1186/s12935-019-0955-2

PD-1 and PD-L1 correlated gene expression profiles and their association with clinical outcomes of breast cancer
Cited by: 35
Author(s): Jiang Cui, Sunrun Cao, Na Li, Lei Jiang, Tao Sun
Software Mentions: 5
Published: about 5 years ago

10.1038/s41598-020-76991-6

Salivary microbiome composition changes after bariatric surgery
Cited by: 11
Author(s): Mária Džunková, Róbert Lipták, Barbora Vlková, Roman Gardlík, M Cierny, Andrés Moya, Peter Celec
Software Mentions: 5
Published: about 4 years ago

10.1186/s12935-021-02117-1

Plastin-3 is a diagnostic and prognostic marker for pancreatic adenocarcinoma and distinguishes from diffuse large B-cell lymphoma
Cited by: 6
Author(s): Fei Xiong, Guanhua Wu, Bing Wang, Yongjun Chen
Software Mentions: 5
Published: over 3 years ago

10.1002/ece3.4518

Ecological patterns in the skin microbiota of frogs from tropical Australia
Cited by: 15
Author(s): Keith A. Christian, Chava L. Weitzman, Alea Rose, Mirjam Kaestli, Karen S. Gibb
Software Mentions: 5
Published: about 6 years ago

10.1038/s41598-020-74602-y

A trophic latitudinal gradient revealed in anchovy and sardine from the Western Mediterranean Sea using a multi-proxy approach
Cited by: 21
Author(s): Eneko Bachiller, Marta Albo-Puigserver, Joan Giménez, María Grazia Pennino, Neus Marí‐Mena, Antonio Esteban, Elena Lloret-Lloret, Angélique Jadaud, Belén Carro, José María Bellido, Marta Coll
Software Mentions: 5
Published: about 4 years ago

10.1038/s41598-019-53975-9

Longitudinal study of the bacterial and fungal microbiota in the human sinuses reveals seasonal and annual changes in diversity
Cited by: 34
Author(s): Brett Wagner Mackenzie, Kevin Chang, Melissa Zoing, Ravi Jain, Michael Hoggard, Kristi Biswas, Richard Douglas, Michael W. Taylor
Software Mentions: 5
Published: almost 5 years ago

10.1371/journal.pone.0181109

Hypoxia tolerance and responses to hypoxic stress during heart and skeletal muscle inflammation in Atlantic salmon (Salmo salar)
Cited by: 33
Author(s): Morten Lund, Maria K. Dahle, Gerrit Timmerhaus, Marta Alarcón, Mark D. Powell, Vidar Aspehaug, Espen Rimstad, Sven Martin Jørgensen
Software Mentions: 5
Published: over 7 years ago

10.1186/s12862-018-1282-2

Adaptation and constraint in the evolution of the mammalian backbone
Cited by: 47
Author(s): Katrina E. Jones, Lorena Benitez, Kenneth D. Angielczyk, Stephanie E. Pierce
Software Mentions: 5
Published: about 6 years ago

10.1371/journal.pone.0221862

Parameterization-induced uncertainties and impacts of crop management harmonization in a global gridded crop model ensemble
Cited by: 38
Author(s): Christian Folberth, Joshua Elliott, Christoph Müller, Juraj Balkovič, James Chryssanthacopoulos, R. C. Izaurralde, Curtis D. Jones, Nikolay Khabarov, Wenfeng Liu, Ashwan Reddy, Erwin Schmid, Rastislav Skalský, Hong Yang, Almut Arneth, Philippe Ciais, Delphine Deryng, P. Lawrence, Stefan Olin, Thomas A. M. Pugh, Alex C. Ruane, Xuhui Wang
Software Mentions: 5
Published: about 5 years ago

10.1186/s12885-020-06740-5

In silico analysis of the immune microenvironment in bladder cancer
Cited by: 16
Author(s): Ye Zhang, Dehua Ou, Dong-wu Zhuang, Zefeng Zheng, Mingen Lin
Software Mentions: 5
Published: over 4 years ago

10.3389/fmicb.2020.562775

Response of Soil Fungal Community to Drought-Resistant Ea-DREB2B Transgenic Sugarcane
Cited by: 7
Author(s): Xue Zhao, Qi Liu, Sasa Xie, Yuke Jiang, Hao Yang, Ziting Wang, Muqing Zhang
Software Mentions: 5
Published: about 4 years ago

10.1038/s41598-017-00223-7

Weaning age influences the severity of gastrointestinal microbiome shifts in dairy calves
Cited by: 78
Author(s): S. J. Meale, S. C. Li, Paula Azevedo, Hooman Derakhshani, T.J. DeVries, J.C. Plaizier, M.A. Steele, Ehsan Khafipour
Software Mentions: 5
Published: over 7 years ago

10.3389/fcell.2021.730240

Multi-Omics Analysis of the Anti-tumor Synergistic Mechanism and Potential Application of Immune Checkpoint Blockade Combined With Lenvatinib
Cited by: 4
Author(s): Yuting Lu, Juebin Jin, Qian Du, Min Hu, Yuhan Wei, Miao Wang, Hongzhong Li, Li Qin
Software Mentions: 5
Published: about 3 years ago

10.1038/s41598-017-08892-0

Development and assessment of a lysophospholipid-based deep learning model to discriminate geographical origins of white rice
Cited by: 14
Author(s): Nguyen Phuoc Long, Dong Kyu Lim, Changyeun Mo, Gi‐Young Kim, Sung Won Kwon
Software Mentions: 5
Published: over 7 years ago

10.1186/s13148-020-00829-1

Underestimated effect of intragenic HIV-1 DNA methylation on viral transcription in infected individuals
Cited by: 12
Author(s): Sam Kint, Wim Trypsteen, Ward De Spiegelaere, Eva Malatinková, Sabine Kinloch-de Loës, Tim De Meyer, Wim Van Criekinge, Linos Vandekerckhove
Software Mentions: 5
Published: over 4 years ago

10.1038/s42003-020-0989-y

IDO1+ Paneth cells promote immune escape of colorectal cancer
Cited by: 22
Author(s): Sandra Pflügler, Jasmin Svinka, Irene Scharf, Ilija Crnčec, Martin Filipits, Pornpimol Charoentong, Markus Tschurtschenthaler, Lukas Kenner, Monira Awad, Judith Stift, Marina Schernthanner, Romana Bischl, Dietmar Herndler‐Brandstetter, Elisabeth Glitzner, Herwig P. Moll, Emilio Casanova, Gerald Timelthaler, Maria Sibilia, Michael Gnant, Sigurd Lax, Josef Thaler, Mathias Müller, Birgit Strobl, Thomas Mohr, Arthur Kaser, Zlatko Trajanoski, Gerwin Heller, Robert Eferl
Software Mentions: 5
Published: over 4 years ago

10.1186/s13148-019-0772-4

Machine-learned analysis of global and glial/opioid intersection–related DNA methylation in patients with persistent pain after breast cancer surgery
Cited by: 10
Author(s): Dario Kringel, Mari A. Kaunisto, Eija Kalso, Jörn Lötsch
Software Mentions: 5
Published: almost 5 years ago

10.3389/fmicb.2016.02143

Linking Peripartal Dynamics of Ruminal Microbiota to Dietary Changes and Production Parameters
Cited by: 37
Author(s): Hooman Derakhshani, Hein Min Tun, F.C. Cardoso, J.C. Plaizier, Ehsan Khafipour, Juan J. Loor
Software Mentions: 5
Published: almost 8 years ago

10.1186/s12284-020-00424-1

Genome Wide Association Study Pinpoints Key Agronomic QTLs in African Rice Oryza glaberrima
Cited by: 12
Author(s): Philippe Cubry, Hélène Pidon, Kim Nhung Ta, Christine Tranchant‐Dubreuil, Anne-Céline Thuillet, Maria Holzinger, Hélène Adam, Honoré Kam, Harold Chrestin, Alain Ghesquière, F. Ochsenbein, François Sabot, Yves Vigouroux, Laurence Albar, Stéfan Jouannic
Software Mentions: 5
Published: about 4 years ago

10.3390/cancers13163975

Context-Specific Efficacy of Apalutamide Therapy in Preclinical Models of Pten-Deficient Prostate Cancer
Cited by: 2
Author(s): Marco A. De Velasco, Yurie Kura, Naomi Ando, Noriko Sako, Eri Banno, Kazutoshi Fujita, Masahiro Nozawa, Kazuhiro Yoshimura, Kazuko Sakai, Kazuhiro Yoshikawa, Kazuto Nishio, Hirotsugu Uemura
Software Mentions: 5
Published: over 3 years ago

10.1038/s41598-018-25021-7

Quantitative comparison of different iron forms in the temporal cortex of Alzheimer patients and control subjects
Cited by: 39
Author(s): Marjolein Bulk, Louise van der Weerd, Wico Breimer, Н. А. Лебедев, Andrew Webb, Jelle J. Goeman, Roberta J. Ward, Martina Huber, Tjerk H. Oosterkamp, Lucia Bossoni
Software Mentions: 5
Published: over 6 years ago

10.3389/fcell.2021.712196

A Novel Classifier Based on Urinary Proteomics for Distinguishing Between Benign and Malignant Ovarian Tumors
Cited by: 11
Author(s): Maowei Ni, Jie Zhou, Zhihui Zhu, Jingtao Yuan, Wei‐Jiang Gong, Jun Zhu, Zhong Zheng, Huajun Zhao
Software Mentions: 5
Published: about 3 years ago

10.3390/proteomes6030031

Regional Diversity in the Postsynaptic Proteome of the Mouse Brain
Cited by: 37
Author(s): Marcia Roy, Oksana Sorokina, Colin McLean, Silvia Tapia-González, Javier DeFelipe, J. Douglas Armstrong, Seth G. N. Grant
Software Mentions: 5
Published: over 6 years ago

10.3389/fmicb.2020.587558

Tibetan Sheep Adapt to Plant Phenology in Alpine Meadows by Changing Rumen Microbial Community Structure and Function
Cited by: 18
Author(s): Hongjin Liu, Linyong Hu, Xueping Han, Na Zhao, Tianwei Xu, Li Ma, Xungang Wang, Xiaoling Zhang, Shenghong Kang, Xinquan Zhao, Shixiao Xu
Software Mentions: 5
Published: about 4 years ago

10.1093/jxb/eraa289

Measuring Rubisco activity: challenges and opportunities of NADH-linked microtiter plate-based and 14C-based assays
Cited by: 11
Author(s): Cristina Rodrigues Gabriel Sales, Anabela Bernardes da Silva, Elizabete Carmo‐Silva
Software Mentions: 5
Published: over 4 years ago

10.3389/fmicb.2020.01212

Diverse Microbial Composition of Sourdoughs From Different Origins
Cited by: 50
Author(s): Andrea Comasio, Marko Verce, Simon Van Kerrebroeck, Luc De Vuyst
Software Mentions: 5
Published: over 4 years ago

10.1002/jcp.28522

Comprehensive analysis of a ceRNA network reveals potential prognostic cytoplasmic lncRNAs involved in HCC progression
Cited by: 84
Author(s): Yi Bai, Junyu Long, Zhisong Liu, Jianzhen Lin, Hanchan Huang, Dongxu Wang, Yang Xu, Fei Miao, Yilei Mao, Xinting Sang, Hong Zhao
Software Mentions: 5
Published: over 5 years ago

10.1155/2020/6937475

A New Prognostic Risk Model Based on PPAR Pathway-Related Genes in Kidney Renal Clear Cell Carcinoma
Cited by: 18
Author(s): Yingkun Xu, Xiunan Li, Yaling Han, Zilong Wang, Chenglin Han, Ningke Ruan, Jianyi Li, Xiao Yu, Qinghua Xia, Guangzhen Wu
Software Mentions: 5
Published: about 4 years ago

10.1155/2020/2514230

Deciphering N<sup>6</sup>-Methyladenosine-Related Genes Signature to Predict Survival in Lung Adenocarcinoma
Cited by: 26
Author(s): Jie Zhu, Min Wang, Daixing Hu
Software Mentions: 5
Published: over 4 years ago

10.1002/pld3.122

Metabolomics of sorghum roots during nitrogen stress reveals compromised metabolic capacity for salicylic acid biosynthesis
Cited by: 27
Author(s): Amy M. Sheflin, Dawn Chiniquy, Chaohui Yuan, Emily Goren, Indrajit Kumar, Max Braud, Thomas P. Brutnell, Andrea L. Eveland, Susannah G. Tringe, Peng Liu, Stephen Kresovich, Ellen L. Marsh, Daniel P. Schachtman, Jessica E. Prenni
Software Mentions: 5
Published: over 5 years ago

10.1038/s41418-021-00784-1

Intestinal microbiota influences clinical outcome and side effects of early breast cancer treatment
Cited by: 58
Author(s): Safae Terrisse, Lisa Derosa, Valerio Iebba, François Ghiringhelli, Inês Vaz-Luís, Guido Kroemer, Marine Fidelle, Stergios Christodoulidis, Nicola Segata, Andrew Maltez Thomas, Anne‐Laure Martin, Aude Sirven, Sibille Everhard, Fanny Aprahamian, Nitharsshini Nirmalathasan, Romy Aarnoutse, Marjolein L. Smidt, Janine Ziemons, Carlos Caldas, Sibylle Loibl, Carsten Denkert, Sylvère Durand, Claudia Iglesias, Filippo Pietrantonio, Bertrand Routy, Fabrice André, Edoardo Pasolli, Suzette Delaloge, Laurence Zitvogel
Software Mentions: 5
Published: over 3 years ago

10.3389/fbioe.2019.00229

The White-Rot Basidiomycete Dichomitus squalens Shows Highly Specific Transcriptional Response to Lignocellulose-Related Aromatic Compounds
Cited by: 21
Author(s): Joanna E. Kowalczyk, Mao Peng, Megan Pawlowski, Anna Lipzen, Vivian Ng, Vasanth Singan, Mei Wang, Igor V. Grigoriev, Miia Mäkelä
Software Mentions: 5
Published: about 5 years ago

10.3389/fmicb.2020.01110

Dietary Soluble and Insoluble Fiber With or Without Enzymes Altered the Intestinal Microbiota in Weaned Pigs Challenged With Enterotoxigenic E. coli F18
Cited by: 28
Author(s): Qingyun Li, Xiyu Peng, Eric Burrough, Orhan Şahin, Stacie A Gould, Nicholas K. Gabler, Crystal L. Loving, Karin S. Dorman, John F. Patience
Software Mentions: 5
Published: over 4 years ago

10.3389/fbioe.2020.604838

Response of Microbial Community to Induced Failure of Anaerobic Digesters Through Overloading With Propionic Acid Followed by Process Recovery
Cited by: 15
Author(s): Azin Khafipour, Elsie M. Jordaan, Daniel Flores-Orozco, Ehsan Khafipour, David B. Levin, Richard Sparling
Software Mentions: 5
Published: almost 4 years ago

Projects: cran: corrplot

Papers Mentioning corrplot 1,077