Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: corHMM

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/corHMM

Hidden Markov Models of Character Evolution
20 versions
Latest release: over 2 years ago
3 dependent packages
875 downloads last month

Papers Mentioning corHMM 20

Evolution of Bird and Insect Flower Traits in Fritillaria L. (Liliaceae)
Cited by: 5
Author(s): Katarzyna Roguz, Laurence Hill, Agata Roguz, Marcin Zych
Software Mentions: 6
Published: over 3 years ago

10.1002/ece3.3206

Growth form evolution and hybridization in Senecio (Asteraceae) from the high equatorial Andes
Cited by: 19
Author(s): Eva Dušková, Petr Sklenář, Filip Kolář, Diana L. A. Vásquez, Katya Romoleroux, Tomáš Fér, Karol Marhold
Software Mentions: 5
Published: over 7 years ago

10.1002/ece3.5267

Macroevolution of arboreality in salamanders
Cited by: 18
Author(s): Erica K. Baken, Dean C. Adams
Software Mentions: 5
Published: over 5 years ago

10.1186/s12862-018-1142-0

Phylogenomics provides a robust topology of the major cnidarian lineages and insights on the origins of key organismal traits
Cited by: 151
Author(s): Ehsan Kayal, Bastian Bentlage, M. Sabrina Pankey, Aki Ohdera, Mónica Medina, David C. Plachetzki, Allen G. Collins, Joseph F. Ryan
Software Mentions: 4
Published: over 6 years ago

10.1098/rspb.2018.0640

The evolution of fungal substrate specificity in a widespread group of crustose lichens
Cited by: 17
Author(s): Philipp Resl, Fernando Fernández-Mendoza, Helmut Mayrhofer, Toby Spribille
Software Mentions: 4
Published: about 6 years ago

10.1002/evl3.127

Evolution of diet across the animal tree of life
Cited by: 31
Author(s): Cristian Román‐Palacios, Joshua P. Scholl, John J. Wiens
Software Mentions: 3
Published: over 5 years ago

10.1093/sysbio/syz005

Integration of Anatomy Ontologies and Evo-Devo Using Structured Markov Models Suggests a New Framework for Modeling Discrete Phenotypic Traits
Cited by: 54
Author(s): Sergei Tarasov
Software Mentions: 3
Published: almost 6 years ago

10.1186/s12862-021-01797-7

Museomics and phylogenomics with protein-encoding ultraconserved elements illuminate the evolution of life history and phallic morphology of flesh flies (Diptera: Sarcophagidae)
Cited by: 10
Author(s): Eliana Buenaventura
Software Mentions: 3
Published: over 3 years ago

10.7717/peerj.6703

Spiders did not repeatedly gain, but repeatedly lost, foraging webs
Cited by: 32
Author(s): Jonathan A. Coddington, Ingi Agnarsson, Chris A. Hamilton, Jason E. Bond
Software Mentions: 3
Published: over 5 years ago

10.7717/peerj.9249

Behavioral, morphological, and ecological trait evolution in two clades of New World Sparrows (AimophilaandPeucaea, Passerellidae)
Cited by: 7
Author(s): Carla Cicero, Nicholas A. Mason, Lauryn Benedict, James D. Rising
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0226136

Melanism evolution in the cat family is influenced by intraspecific communication under low visibility
Cited by: 16
Author(s): Maurício Eduardo Graipel, Juliano André Bogoni, Eduardo Luís Hettwer Giehl, Felipe O. Cerezer, Nilton C. Cáceres, Eduardo Eizirik
Software Mentions: 3
Published: almost 5 years ago

10.1038/s41598-020-64647-4

Accuracy of ancestral state reconstruction for non-neutral traits
Cited by: 27
Author(s): Barbara R. Holland, Saan Ketelaar-Jones, Aidan O'Mara, Michael D. Woodhams, Gregory J. Jordan
Software Mentions: 3
Published: over 4 years ago

10.3389/fpls.2021.710590

A Life Cycle for Modeling Biology at Different Scales
Cited by: 3
Author(s): Kate Harline, Jesús Martínez‐Gómez, Chelsea D. Specht, Adrienne Roeder
Software Mentions: 2
Published: about 3 years ago

10.1186/s12862-020-01716-2

Comprehensive phylogenomic analyses re-write the evolution of parasitism within cynipoid wasps
Cited by: 24
Author(s): Bonnie B. Blaimer, Dietrich Gotzek, Seán G. Brady, Matthew L. Buffington
Software Mentions: 1
Published: almost 4 years ago

10.1126/sciadv.abh4243

Lineage-specific variation in the evolutionary stability of coral photosymbiosis
Cited by: 9
Author(s): Jordan A. Gault, Bastian Bentlage, Danwei Huang, Alexander M. Kerr
Software Mentions: 1
Published: about 3 years ago

10.1186/s12862-020-01738-w

Coevolution of group-living and aposematism in caterpillars: warning colouration may facilitate the evolution from group-living to solitary habits
Cited by: 7
Author(s): Lingzi Wang, Stephen J. Cornell, Michael P. Speed, Kevin Arbuckle
Software Mentions: 1
Published: almost 4 years ago

10.1038/s41598-021-83464-x

Multilocus phylogeny and historical biogeography of Hypostomus shed light on the processes of fish diversification in La Plata Basin
Cited by: 10
Author(s): Yamila Paula Cardoso, Luiz Jardim de Queiroz, Ilham A. Bahechar, Paula Posadas, Juan I. Montoya‐Burgos
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-021-89520-w

Evolutionary history of mental glands in turtles reveals a single origin in an aquatic ancestor and recurrent losses independent of macrohabitat
Cited by: 1
Author(s): Alejandro Ibáñez, Uwe Fritz, Markus Auer, Albert Martínez-Silvestre, Peter Praschag, Emilia Załugowicz, Dagmara Podkowa, Maciej Pabijan
Software Mentions: 1
Published: over 3 years ago

10.3389/fpls.2020.00945

Macroevolution of Flower Color Patterning: Biased Transition Rates and Correlated Evolution with Flower Size
Cited by: 9
Author(s): Matthew H. Koski
Software Mentions: 1
Published: over 4 years ago

10.7717/peerj.1719

Spider phylogenomics: untangling the Spider Tree of Life
Cited by: 246
Author(s): Nicole L. Garrison, Juanita Rodríguez, Ingi Agnarsson, Jonathan A. Coddington, Charles E. Griswold, Christopher A Hamilton, Marshal Hedin, Kevin M. Kocot, Joel M. Ledford, Jason E. Bond
Software Mentions: 1
Published: over 8 years ago