Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: coda

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/coda

Output Analysis and Diagnostics for MCMC
55 versions
Latest release: almost 4 years ago
464 dependent packages
108,687 downloads last month

Papers Mentioning coda 126

Latent-Class Methods to Evaluate Diagnostics Tests for Echinococcus Infections in Dogs
Cited by: 26
Author(s): Sonja Hartnack, Christine M. Budke, Philip S. Craig, Jiamin Qiu, Belgees Boufana, Maiza Campos Ponce, Paul R. Torgerson
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pcbi.1006568

Sequential infection experiments for quantifying innate and adaptive immunity during influenza infection
Cited by: 10
Author(s): Aimin Yan, Sophie Zaloumis, Julie A. Simpson, James M. McCaw
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0225715

Identifying and characterizing extrapolation in multivariate response data
Cited by: 8
Author(s): Meridith L. Bartley, Ephraim M. Hanks, Erin M. Schliep, Patricia A. Soranno, Tyler Wagner
Software Mentions: 2
Published: almost 5 years ago

10.1093/bioinformatics/bty568

Bayesian inference on stochastic gene transcription from flow cytometry data
Cited by: 30
Author(s): Simone Tiberi, Mark D. Walsh, Massimo Cavallaro, Daniel Hebenstreit, Bärbel Finkenstädt
Software Mentions: 2
Published: about 6 years ago

10.7717/peerj.1164

Parametric estimation ofP(X>Y) for normal distributions in the context of probabilistic environmental risk assessment
Cited by: 2
Author(s): Rianne Jacobs, Andriëtte Bekker, Hilko van der Voet, Cajo J. F. ter Braak
Software Mentions: 2
Published: about 9 years ago

10.1186/s12917-016-0814-5

Evaluation of fecal culture and fecal RT-PCR to detect Mycobacterium avium ssp. paratuberculosis fecal shedding in dairy goats and dairy sheep using latent class Bayesian modeling
Cited by: 16
Author(s): C.A. Bauman, Andria Jones‐Bitton, Jocelyn Jansen, D.F. Kelton, Paula I. Menzies
Software Mentions: 2
Published: almost 8 years ago

10.1371/journal.pone.0110268

The Dawn of Open Access to Phylogenetic Data
Cited by: 45
Author(s): Andrew F. Magee, Michael R. May, Brian R. Moore
Software Mentions: 2
Published: almost 10 years ago

10.7717/peerj.7422

Functional group based marine ecosystem assessment for the Bay of Biscay via elasticity analysis
Cited by: 3
Author(s): Geoffrey R. Hosack, Verena M. Trenkel
Software Mentions: 2
Published: about 5 years ago

10.1002/ece3.1394

A hierarchical Bayesian model to estimate the unobservable predation rate on sawfly cocoons by small mammals
Cited by: 0
Author(s): Panisara Pinkantayong, Satoshi Suzuki, Mamoru Kubo, Ken-ichiro Muramoto, Naoto Kamata
Software Mentions: 2
Published: over 9 years ago

10.1098/rspb.2019.2675

Wetter climates select for higher immune gene diversity in resident, but not migratory, songbirds
Cited by: 17
Author(s): Emily O’Connor, Dennis Hasselquist, Jan‐Åke Nilsson, Helena Westerdahl, Charlie K. Cornwallis
Software Mentions: 2
Published: over 4 years ago

10.1002/ece3.4775

Experimental test of birdcall detection by autonomous recorder units and by human observers using broadcast
Cited by: 19
Author(s): Isabel Castro, Alberto De Rosa, Nirosha Priyadarshani, Leanne Bradbury, Stephen Marsland
Software Mentions: 2
Published: over 5 years ago

10.1186/s12862-017-1047-3

Gene flow during glacial habitat shifts facilitates character displacement in a Neotropical flycatcher radiation
Cited by: 16
Author(s): Balaji Chattopadhyay, Kritika M. Garg, Chyi Yin Gwee, Scott V. Edwards
Software Mentions: 2
Published: about 7 years ago

10.1186/1746-6148-8-199

Estimates of marker effects for measures of milk flow in the Italian brown Swiss dairy cattle population
Cited by: 4
Author(s): Kent Gray, Christian Maltecca, A. Bagnato, Marlies Dolezal, Attilio Rossoni, A.B. Samorè, J. P. Cassady
Software Mentions: 2
Published: almost 12 years ago

10.1037/xge0000746

Is there a G factor for metacognition? Correlations in retrospective metacognitive sensitivity across tasks.
Cited by: 52
Author(s): Audrey Mazancieux, Stephen M. Fleming, Céline Souchay, Chris J. A. Moulin
Software Mentions: 2
Published: about 4 years ago

10.3389/fnins.2017.00669

A Hierarchical Bayesian Model for the Identification of PET Markers Associated to the Prediction of Surgical Outcome after Anterior Temporal Lobe Resection
Cited by: 8
Author(s): Sharon Chiang, Michele Guindani, Hsiang J. Yeh, Sandra Dewar, Zulfi Haneef, John M. Stern, Marina Vannucci
Software Mentions: 2
Published: almost 7 years ago

10.1186/s12885-021-08646-2

Geographic disparities in Saskatchewan prostate cancer incidence and its association with physician density: analysis using Bayesian models
Cited by: 1
Author(s): Mustafa Andkhoie, Michael Szafron
Software Mentions: 2
Published: about 3 years ago

10.1186/s12859-019-2888-0

Bayesian model selection for the Drosophila gap gene network
Cited by: 1
Author(s): Asif Zubair, I. G. Rosen, Sergey V. Nuzhdin, Paul Marjoram
Software Mentions: 2
Published: over 5 years ago

10.1093/sysbio/syu082

A Bayesian Supertree Model for Genome-Wide Species Tree Reconstruction
Cited by: 38
Author(s): Leonardo de Oliveira Martins, Diego Mallo, David Posada
Software Mentions: 2
Published: almost 10 years ago

10.1007/s00239-021-09995-z

Structural and Genetic Determinants of Convergence in the Drosophila tRNA Structure–Function Map
Cited by: 1
Author(s): Julie Baker Phillips, David H. Ardell
Software Mentions: 2
Published: over 3 years ago

10.1186/s12862-016-0628-x

Phylogenomics of a rapid radiation: is chromosomal evolution linked to increased diversification in north american spiny lizards (Genus Sceloporus)?
Cited by: 74
Author(s): Adam D. Leaché, Barbara L. Banbury, Charles W. Linkem, Adrián Nieto‐Montes de
Software Mentions: 2
Published: over 8 years ago

10.1534/g3.115.026328

FW: An R Package for Finlay–Wilkinson Regression that Incorporates Genomic/Pedigree Information and Covariance Structures Between Environments
Cited by: 34
Author(s): Lian Lian, Gustavo de los Campos
Software Mentions: 2
Published: over 8 years ago

10.3390/genes11091047

Genomic Regions 10q22.2, 17q21.31, and 2p23.1 Can Contribute to a Lower Lung Function in African Descent Populations
Cited by: 3
Author(s): Héllen Freitas Fonseca, Thiago M. da Silva, M Saraiva, Meddly L. Santolalla, Hanaisa P Sant'Anna, Nathalia Matta Araujo, Natália Peixoto Lima, Raimon Rios, Eduardo Tarazona‐Santos, Bernardo Lessa Horta, Ãlvaro A. Cruz, Maurício Lima Barreto, Camila A. Figueiredo
Software Mentions: 2
Published: about 4 years ago

10.1186/1297-9686-41-10

Model for fitting longitudinal traits subject to threshold response applied to genetic evaluation for heat tolerance
Cited by: 6
Author(s): Juan Pablo Sánchez, Romdhane Rekaya, I. Misztal
Software Mentions: 2
Published: over 15 years ago

10.1186/s12862-019-1414-3

Highly polymorphic mitochondrial DNA and deceiving haplotypic differentiation: implications for assessing population genetic differentiation and connectivity
Cited by: 7
Author(s): Séverine Fourdrilis, Thierry Backeljau
Software Mentions: 2
Published: over 5 years ago

10.1186/s12711-015-0093-9

Genomic prediction of disease occurrence using producer-recorded health data: a comparison of methods
Cited by: 3
Author(s): Kristen L. Parker Gaddis, Francesco Tiezzi, J.B. Cole, J. Clay, Christian Maltecca
Software Mentions: 2
Published: over 9 years ago