cran: cluster | Projects | Ecosyste.ms: Papers

10.1371/journal.pone.0206317

Proteomic analysis of Lactobacillus casei GCRL163 cell-free extracts reveals a SecB homolog and other biomarkers of prolonged heat stress
Cited by: 11
Author(s): Kayode T. Adu, Richard Wilson, David S. Nichols, Anthony L. Baker, John P. Bowman, ML Britz
Software Mentions: 4
Published: almost 6 years ago

10.3390/genes9010044

Molecular Network-Based Identification of Competing Endogenous RNAs in Thyroid Carcinoma
Cited by: 23
Author(s): Minjia Lu, Xingyu Xu, Baohang Xi, Qi Dai, Chenli Li, Li Su, Xiaobin Zhou, Min Tang, Yanwen Yao, Jialiang Yang
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0212473

Nasal microbial composition and chronic otitis media with effusion: A case-control study
Cited by: 18
Author(s): Rebecca E. Walker, Caroline Walker, Carlos A. Camargo, Jim Bartley, David Flint, John M. D. Thompson, Edwin A. Mitchell
Software Mentions: 4
Published: over 5 years ago

10.1186/s12966-020-00992-x

Diurnal patterns of sedentary behavior and changes in physical function over time among older women: a prospective cohort study
Cited by: 8
Author(s): Chase Reuter, John Bellettiere, Sandy Liles, Chongzhi Di, Dorothy D. Sears, Michael J. LaMonte, Marcia L. Stefanick, Andrea Z. LaCroix, Loki Natarajan
Software Mentions: 4
Published: about 4 years ago

10.1186/s12864-018-4709-7

Characterization of phenotypic variation and genome aberrations observed among Phytophthora ramorum isolates from diverse hosts
Cited by: 20
Author(s): Marianne Elliott, Jennifer Yuzon, Mathu Malar C, Sucheta Tripathy, Mai Bui, Gary A. Chastagner, Katie Coats, David M. Rizzo, Matteo Garbelotto, Takao Kasuga
Software Mentions: 4
Published: over 6 years ago

10.3389/fvets.2018.00324

Developing Farm-Level Post-vaccination Sero-Monitoring Systems for H5N1 Highly Pathogenic Avian Influenza in an Endemically Infected Country
Cited by: 0
Author(s): Peter A. Durr, Risa Indriani, Paul Selleck, Abdul R M Adjid, Tatty Syafriati, Jagoda Ignjatovic
Software Mentions: 4
Published: over 5 years ago

10.3389/fmolb.2021.686803

Phenotypic and Functional Analyses of B7S1 in Ovarian Cancer
Cited by: 1
Author(s): Dongli Cai, Fang Wang, Changgang Wang, Liping Jin
Software Mentions: 4
Published: about 3 years ago

10.1186/s12864-021-07531-3

A tail of two pandas— whole genome k-mer signature analysis of the red panda (Ailurus fulgens) and the Giant panda (Ailuropoda melanoleuca)
Cited by: 0
Author(s): Mátyás Cserháti
Software Mentions: 4
Published: over 3 years ago

10.1523/ENEURO.0212-17.2017

Cross-Laboratory Analysis of Brain Cell Type Transcriptomes with Applications to Interpretation of Bulk Tissue Data
Cited by: 125
Author(s): B. Ogan Mancarci, Lilah Toker, Shreejoy J. Tripathy, Brenna Li, Brad R. Rocco, Etienne Sibille, Paul Pavlidis
Software Mentions: 4
Published: almost 7 years ago

10.3389/fonc.2021.636632

Long Noncoding RNA NONHSAT079852.2 Contributes to GBM Recurrence by Functioning as a ceRNA for has-mir-10401-3p to Facilitate HSPA1A Upregulation
Cited by: 3
Author(s): Ningning Zhao, Jiajie Zhang, Lili Zhao, Xiaoni Fu, Qian Zhao, Min Chao, Haiyan Cao, Yang Jiao, Yibo Hu, Chao Chen, Liang Wang, Huijuan Wang
Software Mentions: 4
Published: about 3 years ago

10.1038/s41396-019-0435-7

Rethinking gut microbiome residency and the Enterobacteriaceae in healthy human adults
Cited by: 81
Author(s): Jonathan N. V. Martinson, Nicholas V. Pinkham, Garrett W. Peters, Hanbyul Cho, Jeremy Heng, Mychiel Rauch, Susan C. Broadaway, Seth T. Walk
Software Mentions: 4
Published: over 5 years ago

10.1186/s12986-017-0170-x

High-cholesterol diet does not alter gut microbiota composition in mice
Cited by: 31
Author(s): Lidiya G. Dimova, Nikola Zlatkov, Henkjan J. Verkade, Bernt Eric Uhlin, Uwe J. F. Tietge
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.pone.0135731

A Dissolved Oxygen Threshold for Shifts in Bacterial Community Structure in a Seasonally Hypoxic Estuary
Cited by: 71
Author(s): Rachel L. Spietz, Cheryl M. Williams, Gabrielle Rocap, M. Claire Horner-Devine
Software Mentions: 4
Published: about 9 years ago

10.3389/fpls.2020.01040

Comparison Between Core Set Selection Methods Using Different Illumina Marker Platforms: A Case Study of Assessment of Diversity in Wheat
Cited by: 25
Author(s): Behnaz Soleimani, Heike Lehnert, Jens Keilwagen, Joerg Plieske, Frank Ordon, Sara Naseri Rad, Martin W. Ganal, Sebastian Beier, Dragan Perović
Software Mentions: 4
Published: about 4 years ago

10.3389/fpls.2017.02209

Sequevar Diversity and Virulence of Ralstonia solanacearum Phylotype I on Mayotte Island (Indian Ocean)
Cited by: 11
Author(s): Thomas Chesneau, G. Maignien, Claudine Boyer, Jean-Jacques Chéron, Michel Roux-Cuvelier, Luc Vanhuffel, Stéphane Poussier, Philippe Prior
Software Mentions: 4
Published: over 6 years ago

10.1038/s41398-020-00898-z

Multi-domain potential biomarkers for post-traumatic stress disorder (PTSD) severity in recent trauma survivors
Cited by: 29
Author(s): Ziv Ben‐Zion, Yoav Zeevi, Nimrod Jackob Keynan, Roee Admon, Tal Kozlovski, Haggai Sharon, Pinchas Halpern, Israel Liberzon, Arieh Y. Shalev, Yoav Benjamini, Talma Hendler
Software Mentions: 4
Published: about 4 years ago

10.1186/s12859-021-03969-0

CHICKN: extraction of peptide chromatographic elution profiles from large scale mass spectrometry data by means of Wasserstein compressive hierarchical cluster analysis
Cited by: 2
Author(s): Olga Permiakova, Romain Guibert, Alexandra Kraut, Thomas Fortin, Anne-Marie Hesse, Thomas Bürger
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pone.0007423

Species-Specific Traits Rather Than Resource Partitioning Mediate Diversity Effects on Resource Use
Cited by: 21
Author(s): Jasmin A. Godbold, Rutger Rosenberg, Martin Solan
Software Mentions: 4
Published: almost 15 years ago

10.3390/plants10020225

Incorporating Drought and Submergence Tolerance QTL in Rice (Oryza sativa L.)—The Effects under Reproductive Stage Drought and Vegetative Stage Submergence Stresses
Cited by: 11
Author(s): Asmuni Mohd Ikmal, Abd Aziz Shamsudin Noraziyah, R. Wickneswari
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pone.0212400

Capturing the diversity of working age life-courses: A European perspective on cohorts born before 1945
Cited by: 13
Author(s): Kathrin Komp-Leukkunen
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0158811

Dynamics of the Fouling Layer Microbial Community in a Membrane Bioreactor
Cited by: 39
Author(s): Anja Ziegler, Simon Jon McIlroy, Poul Larsen, Mads Albertsen, Aviaja Anna Hansen, Nicolas Heinen, Per Halkjær Nielsen
Software Mentions: 4
Published: about 8 years ago

10.1371/journal.pone.0073371

Conservation Priorities in a Biodiversity Hotspot: Analysis of Narrow Endemic Plant Species in New Caledonia
Cited by: 92
Author(s): Adrien S. Wulff, Peter M. Hollingsworth, Antje Ahrends, Tanguy Jaffré, Jean‐Marie Veillon, Laurent L’Huillier, Bruno Fogliani
Software Mentions: 4
Published: about 11 years ago

10.1016/j.cub.2019.09.031

Differential Sperm Motility Mediates the Sex Ratio Drive Shaping Mouse Sex Chromosome Evolution
Cited by: 37
Author(s): Claudia Cattoni Rathje, Emma Elizabeth Philippa Johnson, Deborah Drage, Christina Patinioti, Graciela Silvestri, Nabeel A. Affara, Côme Ialy-Radio, Julie Cocquet, Benjamin M. Skinner, Peter J. I. Ellis
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.pone.0155536

Combined Effects of Soil Biotic and Abiotic Factors, Influenced by Sewage Sludge Incorporation, on the Incidence of Corn Stalk Rot
Cited by: 10
Author(s): R. Ghini, Nara Lúcia Perondi Fortes, Juan A Navas‐Cortés, Carlos Alberto Silva, W. Bettiol
Software Mentions: 4
Published: over 8 years ago

10.1186/s13068-020-01776-y

Biomethanation processes: new insights on the effect of a high H2 partial pressure on microbial communities
Cited by: 38
Author(s): Lucia Braga Nan, Éric Trably, Gaëlle Santa-Catalina, Nicolas Bernet, Jean-Philippe Delgenès, Renaud Escudié
Software Mentions: 4
Published: about 4 years ago

10.7554/eLife.11351

Multivariate analysis of electrophysiological diversity of Xenopus visual neurons during development and plasticity
Cited by: 21
Author(s): Christopher M. Ciarleglio, Arseny S. Khakhalin, Angelia F Wang, Alexander C Constantino, Sarah P Yip, Carlos D. Aizenman
Software Mentions: 4
Published: almost 9 years ago

10.3390/ijms20040962

Transcriptional Dynamics of Grain Development in Barley (Hordeum vulgare L.)
Cited by: 29
Author(s): Jianxin Bian, Pingchuan Deng, Haoshuang Zhan, Xiaotong Wu, Mutthanthirige Don Lalith Chandana Nishantha, Zhaogui Yan, Xianghong Du, Xiaojun Nie, Weining Song
Software Mentions: 4
Published: over 5 years ago

10.1186/s12862-016-0592-5

Age-related association of venom gene expression and diet of predatory gastropods
Cited by: 16
Author(s): Dan Chang, Thomas F. Duda
Software Mentions: 4
Published: over 8 years ago

10.1038/s41598-017-03871-x

Analysis of survival and hatching transcriptomes from potato cyst nematodes, Globodera rostochiensis and G. pallida
Cited by: 21
Author(s): Marc‐Olivier Duceppe, Joël Lafond-Lapalme, Juan E. Palomares-Rius, Michaël Sabeh, Vivian C. Blok, Peter Moffett, Benjamin Mimee
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.pone.0027965

Involvement of Histone Acetylation of Sox17 and Foxa2 Promoters during Mouse Definitive Endoderm Differentiation Revealed by MicroRNA Profiling
Cited by: 26
Author(s): Shijun Fu, Fei Qi, Hua Jiang, Shannon Chuai, Song Shi, Wen Cheng Xiong, Lei Jiang, Chris X. Lu, Peter Atadja, En Li, Jianyong Shou
Software Mentions: 4
Published: almost 13 years ago

10.1002/ece3.1500

Testing Taxon Tenacity of Tortoises: evidence for a geographical selection gradient at a secondary contact zone
Cited by: 17
Author(s): Taylor Edwards, Kristin H. Berry, Richard Inman, Todd C. Esque, Kenneth E. Nussear, Cristina A. Jones, Melanie Culver
Software Mentions: 4
Published: over 9 years ago

10.5194/aab-64-187-2021

Herd clustering strategies and corresponding genetic evaluations based on social–ecological characteristics for a local endangered cattle breed
Cited by: 1
Author(s): Jonas Herold, Kerstin Brügemann, Sven König
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pone.0229687

Expanding radiogenic strontium isotope baseline data for central Mexican paleomobility studies
Cited by: 16
Author(s): Sofía I. Pacheco‐Forés, Gwyneth W. Gordon, Kelly J. Knudson
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0204733

Woody species composition and diversity of riparian vegetation along the Walga River, Southwestern Ethiopia
Cited by: 20
Author(s): Misganaw Meragiaw, Zerihun Woldu, Vegard Martinsen, Bal Ram Singh
Software Mentions: 4
Published: almost 6 years ago

10.1002/ece3.4057

Applying ecological site concepts and state-and-transition models to a grazed riparian rangeland
Cited by: 6
Author(s): Felix Ratcliff, James W. Bartolome, Luke Macaulay, Sheri Spiegal, Michael D. White
Software Mentions: 4
Published: over 6 years ago

10.1186/s12967-015-0453-9

GLI2 inhibition abrogates human leukemia stem cell dormancy
Cited by: 81
Author(s): Anil Sadarangani, Gabriel Pineda, Kathleen M. Lennon, Hye Jung Chun, Alice Shih, Annelie Schairer, Angela C. Court, Daniel Goff, Sacha Prashad, Ifat Geron, Russell Wall, John Douglas Mcpherson, Richard A. Moore, Minya Pu, Lei Bao, Amy Jackson-Fisher, Michael J. Munchhof, Todd VanArsdale, Tannishtha Reya, Sheldon R. Morris, Mark D. Minden, Karen Messer, Hanna Mikkola, Marco A. Marra, Thomas J. Hudson, Catriona Jamieson
Software Mentions: 4
Published: over 9 years ago

10.1002/ece3.7681

Seasonal dynamics of mesozooplankton biomass over a sub‐Arctic continental shelf
Cited by: 1
Author(s): Marc J. Silberberger, Paul E. Renaud, Ketil Eiane, Henning Reiss
Software Mentions: 4
Published: over 3 years ago

10.1007/s00248-020-01576-9

Biodiversity Loss Threatens the Current Functional Similarity of Beta Diversity in Benthic Diatom Communities
Cited by: 8
Author(s): Leena Virta, Janne Soininen, Alf Norkko
Software Mentions: 4
Published: about 4 years ago

10.1038/srep09396

A phylogenetically informed delineation of floristic regions within a biodiversity hotspot in Yunnan, China
Cited by: 39
Author(s): Rong Li, Nathan J. B. Kraft, Jie Yang, Yuhua Wang
Software Mentions: 4
Published: over 9 years ago

10.1038/srep08397

Diversity in gut bacterial community of school-age children in Asia
Cited by: 189
Author(s): Jiro Nakayama, Koichi Watanabe, Jiahui Jiang, Kazunori Matsuda, Shiou Huei Chao, Pri Haryono, Orawan La-ongkham, Martinus Agus Sarwoko, I Nengah Sujaya, Liang Zhao, Kang Ting Chen, Yen Po Chen, Hsueh Hui Chiu, Tomoko Hidaka, Na Huang, Chikako Kiyohara, Takashi Kurakawa, Naoshige Sakamoto, Kenji Sonomoto, Kousuke Tashiro, Hirokazu Tsuji, Ming Ju Chen, Vichai Leelavatcharamas, Chii Cherng Liao, Sunee Nitisinprasert, Endang Sri Rahayu, Fa Zheng Ren, Yao‐Chou Tsai, Yuan Kun Lee
Software Mentions: 4
Published: over 9 years ago

10.3389/frai.2021.642505

Reduction of Survey Sites in Dialectology: A New Methodology Based on Clustering
Cited by: 2
Author(s): Péter Jeszenszky, Carina Steiner, Adrian Leemann
Software Mentions: 3
Published: over 3 years ago

10.1371/journal.pone.0213591

Diurnal biomarkers reveal key photosynthetic genes associated with increased oil palm yield
Cited by: 5
Author(s): Bee Keat Neoh, Yick Ching Wong, Huey Fang Teh, Theresa Lee Mei Ng, Soon Huat Tiong, Tony Eng Keong Ooi, Mohd Zairey Md Zain, Mohd Amiron Ersad, Chee Keng Teh, Heng Leng Lee, Siti Khadijah Mohd Rais, See Siang Cheah, Fook Tim Chew, Harikrishna Kulaveerasingam, David R. Appleton
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0074873

Cluster Analysis of Clinical Data Identifies Fibromyalgia Subgroups
Cited by: 50
Author(s): Elisa Docampo, Antonio Collado, Geòrgia Escaramís, Jordi Carbonell, Javier Rivera, Julie Vidal, José Alegre, Raquel Rabionet, Xavier Estivill
Software Mentions: 3
Published: almost 11 years ago

10.1371/journal.pone.0074914

A New Method for Extracting Skin Microbes Allows Metagenomic Analysis of Whole-Deep Skin
Cited by: 21
Author(s): Marc García-Garcerá, Koldo Garcia-Etxebarria, Mireia Coscollá, Amparo Latorre, Francesc Calafell
Software Mentions: 3
Published: almost 11 years ago

10.3390/ijms20236090

Disclosure of the Molecular Mechanism of Wheat Leaf Spot Disease Caused by Bipolaris sorokiniana through Comparative Transcriptome and Metabolomics Analysis
Cited by: 21
Author(s): Wei Ye, Taomei Liu, Weiyang Zhang, Saini Li, Muzi Zhu, Haohua Li, Yali Kong, Luoshan Xu
Software Mentions: 3
Published: almost 5 years ago

10.1371/journal.pone.0116890

Soil Properties and Olive Cultivar Determine the Structure and Diversity of Plant-Parasitic Nematode Communities Infesting Olive Orchards Soils in Southern Spain
Cited by: 37
Author(s): Juan E. Palomares-Rius, Pablo Castillo, Miguel Montes-Borrego, Juan A Navas‐Cortés, Blanca B. Landa
Software Mentions: 3
Published: over 9 years ago

10.1186/s40478-020-00930-9

Clinical, imaging, and molecular analysis of pediatric pontine tumors lacking characteristic imaging features of DIPG
Cited by: 30
Author(s): Jason Chiang, Alexander K. Diaz, Lydia Makepeace, Xiaoyü Li, Yuanyuan Han, Yimei Li, Paul Klimo, Frederick A. Boop, Suzanne J. Baker, Amar Gajjar, Thomas E. Merchant, David W. Ellison, Alberto Broniscer, Zoltán Patay, Christopher L. Tinkle
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0122811

Extending the Functionality of Behavioural Change-Point Analysis with k-Means Clustering: A Case Study with the Little Penguin (Eudyptula minor)
Cited by: 32
Author(s): Jingjing Zhang, Kathleen O’Reilly, George L. Perry, Graeme A. Taylor, Todd E. Dennis
Software Mentions: 3
Published: over 9 years ago

10.1371/journal.pone.0000879

Dating Phylogenies with Hybrid Local Molecular Clocks
Cited by: 36
Author(s): Stéphane Aris‐Brosou
Software Mentions: 3
Published: about 17 years ago

10.1186/1471-2180-12-220

Increased knowledge of Francisella genus diversity highlights the benefits of optimised DNA-based assays
Cited by: 15
Author(s): Jon Ahlinder, Caroline Öhrman, Kerstin Svensson, Petter Lindgren, Anders Johansson, Mats Forsman, Pär Larsson, Andreas Sjödin
Software Mentions: 3
Published: over 12 years ago

10.3390/ijms21228430

Complementary Transcriptome and Proteome Analyses Provide Insight into the Floral Transition in Bamboo (Dendrocalamus latiflorus Munro)
Cited by: 3
Author(s): Xiaoyan Wang, Yujiao Wang, Guoqian Yang, Lei Zhao, Xuemei Zhang, Li D, Zhenhua Guo
Software Mentions: 3
Published: almost 4 years ago

10.1038/s42003-019-0680-3

Molecular signature of an ancient organizer regulated by Wnt/β-catenin signalling during primary body axis patterning in Hydra
Cited by: 18
Author(s): Puli Chandramouli Reddy, Akhila Gungi, Suyog Ubhe, Saurabh J. Pradhan, Amol Kolte, Sanjeev Galande
Software Mentions: 3
Published: almost 5 years ago

10.1186/s40168-017-0384-1

Host contributes to longitudinal diversity of fecal microbiota in swine selected for lean growth
Cited by: 77
Author(s): Deren Lu, Francesco Tiezzi, Constantino Schillebeeckx, Nathan P. McNulty, Charles V. Schwab, Caleb M Shull, Christian Maltecca
Software Mentions: 3
Published: over 6 years ago

10.1093/database/baw099

SorghumFDB: sorghum functional genomics database with multidimensional network analysis
Cited by: 40
Author(s): Tian Tian, Qi You, Liwei Zhang, Xin Yi, Hengyu Yan, Wenying Xu, Zhen Su
Software Mentions: 3
Published: over 8 years ago

10.3390/ijms22063002

Comparative Transcriptome and Expression Profiling of Resistant and Susceptible Banana Cultivars during Infection by Fusarium oxysporum
Cited by: 16
Author(s): Manisha Kaushal, George Mahuku, Rony Swennen
Software Mentions: 3
Published: over 3 years ago

10.3390/molecules24081587

Anticandidal Potential of Stem Bark Extract from Schima superba and the Identification of Its Major Anticandidal Compound
Cited by: 2
Author(s): Chun Fu Wu, Hongtan Wu, Qing Wang, Guey‐Horng Wang, Xue Yang, Yu-Pei Chen, Guang‐Xiong Zhou
Software Mentions: 3
Published: over 5 years ago

10.1002/ece3.7349

Geomorphological characteristics of the Wabash River, USA: Influence on fish assemblages
Cited by: 2
Author(s): J. Albert Robbins, Mark Pyron
Software Mentions: 3
Published: over 3 years ago

10.1002/ece3.3410

Stable isotopes can be used to infer the overwintering locations of prebreeding marine birds in the Canadian Arctic
Cited by: 16
Author(s): Rolanda J. Steenweg, Glenn T. Crossin, T. Kurt Kyser, Flemming Merkel, H. Grant Gilchrist, Holly L. Hennin, Gregory J. Robertson, Jennifer F. Provencher, Joanna Mills Flemming, Oliver P. Love
Software Mentions: 3
Published: about 7 years ago

10.2196/17186

Communication Behavior Changes Between Patients With Diabetes and Healthcare Providers Over 9 Years: Retrospective Cohort Study
Cited by: 16
Author(s): Arriel Benis, Refael Barkan, Tomer Sela, Nissim Harel
Software Mentions: 3
Published: about 4 years ago

10.3389/fncel.2021.662329

Rod and Cone Connections With Bipolar Cells in the Rabbit Retina
Cited by: 10
Author(s): Christopher J. Whitaker, Gina Nobles, Mana Ishibashi, Stephen C. Massey
Software Mentions: 3
Published: over 3 years ago

10.3389/fchem.2020.00493

Binding of the Anti-FIV Peptide C8 to Differently Charged Membrane Models: From First Docking to Membrane Tubulation
Cited by: 2
Author(s): Daniele Di Marino, Annalisa Bruno, Manuela Grimaldi, Mario Scrima, Ilaria Stillitano, Giuseppina Amodio, Grazia Della Sala, Alice Romagnoli, Augusta De Santis, Ornella Moltedo, Paolo Remondelli, Giovanni Boccia, Gerardino D’Errico, Anna Maria D’Ursi, Vittorio Limongelli
Software Mentions: 3
Published: about 4 years ago

10.1186/s12864-015-2233-6

Genome-wide analysis of WRKY transcription factors in white pear (Pyrus bretschneideri) reveals evolution and patterns under drought stress
Cited by: 66
Author(s): Xiaosan Huang, Kongqing Li, Xiaogang Xu, Zhenghong Yao, Can Jin, Shaoling Zhang
Software Mentions: 3
Published: almost 9 years ago

10.1186/s12864-016-2603-8

Contrasting invertebrate immune defense behaviors caused by a single gene, the Caenorhabditis elegans neuropeptide receptor gene npr-1
Cited by: 40
Author(s): Rania Nakad, L. Basten Snoek, Wentao Yang, Sunna Ellendt, Franziska Schneider, Timm G. Mohr, Lone Rösingh, Anna Cäcilia Masche, Philip Rosenstiel, Katja Dierking, J.E. Kammenga, Hinrich Schulenburg
Software Mentions: 3
Published: over 8 years ago

10.3389/fmicb.2018.00621

Identification and Characterization of als Genes Involved in D-Allose Metabolism in Lineage II Strain of Listeria monocytogenes
Cited by: 7
Author(s): Lu Zhang, Yan Wang, Dongxin Liu, Lijuan Luo, Yi Wang, Changyun Ye
Software Mentions: 3
Published: over 6 years ago

10.1186/1471-2164-15-744

Transcriptome differences in the hypopharyngeal gland between Western Honeybees (Apis mellifera) and Eastern Honeybees (Apis cerana)
Cited by: 26
Author(s): Hao Líu, Zilong Wang, Li Tian, Qiuhong Qin, Xiaobo Wu, Yan Wei, Zhen Zeng
Software Mentions: 3
Published: about 10 years ago

10.3389/fmicb.2018.01345

Urban Diets Linked to Gut Microbiome and Metabolome Alterations in Children: A Comparative Cross-Sectional Study in Thailand
Cited by: 53
Author(s): Juma Kisuse, Orawan La-ongkham, Massalin Nakphaichit, Phatthanaphong Therdtatha, Rie Momoda, Masaru Tanaka, Shinji Fukuda, Siam Popluechai, Kongkiat Kespechara, Kenji Sonomoto, Yuan Kun Lee, Sunee Nitisinprasert, Jiro Nakayama
Software Mentions: 3
Published: about 6 years ago

10.3389/fmicb.2020.576156

Artificial Larval Diet Mediates the Microbiome of Queensland Fruit Fly
Cited by: 10
Author(s): Rajib Majumder, Brodie Sutcliffe, Saleh Mohammad Adnan, Bishwo P. Mainali, Bernard C. Dominiak, Phillip W. Taylor, Toni A. Chapman
Software Mentions: 3
Published: about 4 years ago

10.1186/s12864-017-3973-2

Comparative transcriptome analysis reveals key cadmium transport-related genes in roots of two pak choi (Brassica rapa L. ssp. chinensis) cultivars
Cited by: 37
Author(s): Rugang Yu, Dan Li, Xiaodong Du, Shenglan Xia, Caifeng Liu, Gangrong Shi
Software Mentions: 3
Published: about 7 years ago

10.3389/fpls.2016.00682

Transcriptomic Analysis Identifies Differentially Expressed Genes (DEGs) Associated with Bolting and Flowering in Radish (Raphanus sativus L.)
Cited by: 17
Author(s): Shaoping Nie, Chao Li, Yan Wang, Liang Xu, Everlyne M. Muleke, Mingjia Tang, Xiaochuan Sun, Liwang Liu
Software Mentions: 3
Published: over 8 years ago

10.1371/journal.pone.0028275

The Global Transcriptional Response of Fission Yeast to Hydrogen Sulfide
Cited by: 8
Author(s): Jianmin Xu, Weizhi He, Alastair I. H. Murchie, Dongrong Chen
Software Mentions: 3
Published: almost 13 years ago

10.1186/s12864-017-4110-y

Evolution and expression analysis reveal the potential role of the HD-Zip gene family in regulation of embryo abortion in grapes (Vitis vinifera L.)
Cited by: 45
Author(s): Zhiqian Li, Chen Zhang, Yurui Guo, Weili Niu, Yuejin Wang, Yan Xu
Software Mentions: 3
Published: almost 7 years ago

10.1093/bioinformatics/btz067

DeepAMR for predicting co-occurrent resistance of <i>Mycobacterium tuberculosis</i>
Cited by: 27
Author(s): Yang Yang, Timothy M. Walker, A Sarah Walker, Daniel J. Wilson, Timothy E. A. Peto, Derrick W. Crook, Farah E. Shamout, Irena Arandjelović, Iñaki Comas, Maha Farhat, Qian Gao, Vitali Sintchenko, Dick van Soolingen, Sarah Hoosdally, Ana Lúıza Gibertoni Cruz, Joshua A. Carter, Clara Grazian, Sarah G Earle, Samaneh Kouchaki, Yang Yang, Timothy M. Walker, Philip Fowler, David A. Clifton, Zamin Iqbal, Martin Hunt, E. Grace Smith, Priti Rathod, Lisa Jarrett, Daniela Matias, Daniela María Cirillo, Emanuele Borroni, Simone Battaglia, Arash Ghodousi, Andrea Spitaleri, Andrea Maurizio Cabibbe, Sabira Tahseen, Kayzad Nilgiriwala, Sanchi Shah, Camilla Rodrigues, Priti Kambli, Utkarsha Surve, R. S. Khot, Stefan Niemann, Thomas Köhl, Matthias Merker, Harald Hoffmann, Nikolay Molodtsov, Sara Plesnik, Nazir Ismail, Guy Thwaites, Thuong Nguyen Thuy Thuong, Nhung Hoang Ngoc, Vijay Srinivasan, D. J. Moore, David Jorge Coronel, Walter Solano, George F. Gao, Guangxue He, Yanlin Zhao, Aijing Ma, Chunfa Liu, Baoli Zhu, Ian F. Laurenson, Pauline Claxton, Anastasia Koch, Robert J. Wilkinson, Ajit Lalvani, James E. Posey, James Jennifer Gardy, Jim Werngren, Nicholas I. Paton, Ruwen Jou, Mei-Hua Wu, Wan-Hsuan Lin, Lucilaine Ferrazoli, Rosângela Siqueira de Oliveira, São Paulo, Tingting Zhu, David A. Clifton
Software Mentions: 3
Published: over 5 years ago

10.3390/genes10070544

Seasonal Stability and Dynamics of DNA Methylation in Plants in a Natural Environment
Cited by: 18
Author(s): Tasuku Ito, Hiroaki Nishio, Yoshiaki Tarutani, Naoko Emura, Mie N. Honjo, Atsushi Toyoda, Asao Fujiyama, Tetsuji Kakutani, Hiroshi Kudoh
Software Mentions: 3
Published: about 5 years ago

10.3390/genes12050745

Novel QTL Associated with Shoot Branching Identified in Doubled Haploid Rice (Oryza sativa L.) under Low Nitrogen Cultivation
Cited by: 6
Author(s): Young Ho Kwon, Nkulu Rolly Kabange, Ji Yun Lee, So-Myeong Lee, Jin-Kyung Cha, Dongjin Shin, Jun-Hyeon Cho, Ju-Won Kang, Jong-Min Ko, Jonghee Lee
Software Mentions: 3
Published: over 3 years ago

10.1186/gb-2008-9-12-r181

Male reproductive development: gene expression profiling of maize anther and pollen ontogeny
Cited by: 89
Author(s): Junjun Ma, David S. Skibbe, John Fernandes, Virginia Walbot
Software Mentions: 3
Published: over 16 years ago

10.1093/gbe/evz208

Complete Genome Sequence of the Biocontrol Agent Bacillus velezensis UFLA258 and Its Comparison with Related Species: Diversity within the Commons
Cited by: 10
Author(s): Fabíola de Jesus Silva, Larissa Carvalho Ferreira, Vicente Paulo Campos, Valter Cruz-Magalhães, Aline Ferreira Barros, Jackeline Pereira Andrade, Daniel P. Roberts, Jorge Teodoro de Souza
Software Mentions: 3
Published: almost 5 years ago

10.3390/nu12092746

Nutrients and Caloric Intake Associated with Fruits, Vegetables, and Legumes in the Elderly European Population
Cited by: 6
Author(s): Danila Azzolina, Luca Vedovelli, Silvia Gallipoli, Megan French, Marco Ghidina, Manfred Lamprecht, Melina Tsiountsioura, Giulia Lorenzoni, Darío Gregori
Software Mentions: 3
Published: about 4 years ago

10.1186/s41065-017-0027-3

Genome-wide association study of rust traits in orchardgrass using SLAF-seq technology
Cited by: 13
Author(s): Bing Zeng, Haidong Yan, Xinchun Liu, Wenjing Zang, Ailing Zhang, Sifan Zhou, Linkai Huang, Jinping Liu
Software Mentions: 3
Published: over 7 years ago

10.1371/journal.pone.0173020

Petri net-based approach to modeling and analysis of selected aspects of the molecular regulation of angiogenesis
Cited by: 11
Author(s): Dorota Formanowicz, Marcin Radom, Piotr Zawierucha, Piotr Formanowicz
Software Mentions: 3
Published: over 7 years ago

10.1186/s13036-019-0180-5

Expression profile analysis of long non-coding RNA in skeletal muscle of osteoporosis by microarray and bioinformatics
Cited by: 8
Author(s): Shaojin Liu, Hongxing Huang, Shuang Chai, Hewei Wei, Jiachun Huang, Lei Wan
Software Mentions: 3
Published: over 5 years ago

10.1186/s40478-018-0602-5

Tectal glioma as a distinct diagnostic entity: a comprehensive clinical, imaging, histologic and molecular analysis
Cited by: 27
Author(s): Anthony Pak-Yin Liu, Julie H. Harreld, Lisa M. Jacola, Madelyn Gero, Sahaja Acharya, Yahya Ghazwani, Shengjie Wu, Xiaoyü Li, Paul Klimo, Amar Gajjar, Jason Chiang, Ibrahim Qaddoumi
Software Mentions: 3
Published: almost 6 years ago

10.1107/S1399004714025875

<i>Data Exploration Toolkit</i>for serial diffraction experiments
Cited by: 27
Author(s): Oliver B. Zeldin, Aaron S. Brewster, Johan Hattne, Monarin Uervirojnangkoorn, A.Y. Lyubimov, Qiuhong Zhou, Minglei Zhao, William I. Weis, Nicholas K. Sauter, Axel T. Brunger
Software Mentions: 3
Published: over 9 years ago

10.1093/bioinformatics/btu098

fast_protein_cluster: parallel and optimized clustering of large-scale protein modeling data
Cited by: 14
Author(s): Ling Hong Hung, Ram Samudrala
Software Mentions: 3
Published: over 10 years ago

10.1111/1751-7915.12157

Compositional profile of α / β‐hydrolase fold proteins in mangrove soil metagenomes: prevalence of epoxide hydrolases and haloalkane dehalogenases in oil‐contaminated sites
Cited by: 14
Author(s): Diego Javier Jiménez, Francisco Dini‐Andreote, Júlia Ronzella Ottoni, Valéria Maia de Oliveira, Jan Dirk van Elsas, Fernando Dini Andreote
Software Mentions: 3
Published: about 10 years ago

10.1186/1471-2164-14-552

De novo assembly and characterization of fruit transcriptome in Litchi chinensis Sonn and analysis of differentially regulated genes in fruit in response to shading
Cited by: 82
Author(s): Caiqin Li, Yanyan Wang, Xu-Ming Huang, Jiang Li, Huicong Wang, Jianguo Li
Software Mentions: 3
Published: over 11 years ago

10.1038/srep10035

Atlas of tissue renin-angiotensin-aldosterone system in human: A transcriptomic meta-analysis
Cited by: 50
Author(s): Ali Nehme, Catherine Cerutti, Nedra Dhaouadi, Marie Paule Gustin, Pierre‐Yves Courand, Kazem Zibara, Giampiero Bricca
Software Mentions: 3
Published: over 9 years ago

10.1038/s41598-017-02329-4

Expression Profiling of mRNAs and Long Non-Coding RNAs in Aged Mouse Olfactory Bulb
Cited by: 11
Author(s): Ming Wang, Wei Liu, Jian Jiao, Jingyun Li, Chengshuo Wang, Luo Zhang
Software Mentions: 3
Published: over 7 years ago

10.3390/molecules26175141

TRIM28 Selective Nanobody Reduces Glioblastoma Stem Cell Invasion
Cited by: 14
Author(s): Andrej Porčnik, Metka Novak, Barbara Breznik, Bernarda Majc, Barbara Hrastar, Neja Šamec, Alja Zottel, Ivana Jovčevska, Miloš Vittori, Ana Rotter, Radovan Komel, Tamara Lah Turnšek
Software Mentions: 3
Published: about 3 years ago

10.1038/s41598-018-25700-5

The cytokine secretion profile of mesenchymal stromal cells is determined by surface structure of the microenvironment
Cited by: 112
Author(s): Daniëlle G. Leuning, Nick R. M. Beijer, Nadia A. du Fossé, Steven Vermeulen, Ellen Lievers, Cees van Kooten, Ton J. Rabelink, Jan de Boer
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pmed.0030047

Gene Expression Programs in Response to Hypoxia: Cell Type Specificity and Prognostic Significance in Human Cancers
Cited by: 549
Author(s): Jen‐Tsan Chi, Zhen Wang, Dimitry S.A. Nuyten, Edwin H. Rodriguez, Marci E. Schaner, Ali Salim, Yun Wang, Gunnar B. Kristensen, Åslaug Helland, Anne Lise Børresen-Dale, Amato J. Giaccia, Michael T. Longaker, Trevor Hastie, George P. Yang, Marc J. van de Vijver, Patrick O. Brown
Software Mentions: 3
Published: over 18 years ago

10.1038/s41598-018-29920-7

Stationary and portable sequencing-based approaches for tracing wastewater contamination in urban stormwater systems
Cited by: 23
Author(s): Yue Hu, Nelson Ndegwa, Johannes Alneberg, Sebastian Johansson, Jürg Brendan Logue, Mikael Huss, Max Käller, Joakim Lundeberg, Jens Fagerberg, Anders F. Andersson
Software Mentions: 3
Published: about 6 years ago

10.1371/journal.pgen.1005154

Genome-Wide Negative Feedback Drives Transgenerational DNA Methylation Dynamics in Arabidopsis
Cited by: 49
Author(s): Tasuku Ito, Yoshiaki Tarutani, Taiko Kim To, Mohamed Kassam, Evelyne Duvernois-Berthet, Sandra Cortijo, Kazuya Takashima, Hidetoshi Saze, Atsushi Toyoda, Asao Fujiyama, Vincent Colot, Tetsuji Kakutani
Software Mentions: 3
Published: over 9 years ago

10.1371/journal.pcbi.1007913

Two-step mechanism of J-domain action in driving Hsp70 function
Cited by: 16
Author(s): Bartłomiej Tomiczek, Wojciech Delewski, Łukasz Nierzwicki, Milena Stolarska, Igor Grochowina, Brenda Schilke, Rafał Dutkiewicz, Marta A. Uzarska, Szymon J. Ciesielski, Jacek Czub, Elizabeth A. Craig, Jarosław Marszałek
Software Mentions: 3
Published: over 4 years ago

10.3390/plants10091874

Analysis of PRX Gene Family and Its Function on Cell Lignification in Pears (Pyrus bretschneideri)
Cited by: 3
Author(s): Zhihua Xie, Weikang Rui, Yazhou Yuan, Xiaofei Song, Xing Liu, Xin Gong, Jianping Bao, Shaoling Zhang, Khanizadeh Shahrokh, Shutian Tao
Software Mentions: 3
Published: about 3 years ago

10.1038/s41598-019-56038-1

LXR-inverse agonism stimulates immune-mediated tumor destruction by enhancing CD8 T-cell activity in triple negative breast cancer
Cited by: 34
Author(s): Katherine Carpenter, Aurore-Cécile Valfort, Nickolas Steinauer, Arindam Chatterjee, Suomia Abuirqeba, Shabnam Majidi, Monideepa Sengupta, Richard J. Di Paolo, Laurie P. Shornick, Jinsong Zhang, Colin A. Flaveny
Software Mentions: 3
Published: almost 5 years ago

10.1038/s41598-020-60067-6

Challenges in the serological evaluation of dogs clinically suspect for canine leishmaniasis
Cited by: 10
Author(s): Nuno Santarém, Susana Sousa, Célia G. Amorim, Nuno Lima de Carvalho, Hugo Lima de Carvalho, Óscar Felgueiras, Margarida Brito, Anabela Cordeiro-da-Silva
Software Mentions: 3
Published: over 4 years ago

10.1007/s00248-016-0775-z

Nitrate and the Origin of Saliva Influence Composition and Short Chain Fatty Acid Production of Oral Microcosms
Cited by: 50
Author(s): Jessica E. Koopman, Mark J. Buijs, Bernd W. Brandt, Bart J. F. Keijser, Wim Crielaard, Egija Zaura
Software Mentions: 3
Published: over 8 years ago

10.1186/s12943-019-1035-x

Pan-cancer analysis identifies telomerase-associated signatures and cancer subtypes
Cited by: 56
Author(s): Zhenhua Luo, Weixu Wang, Feng Li, Zhou Songyang, Xuyang Feng, Changchang Xin, Zhiming Dai, Yuanyan Xiong
Software Mentions: 3
Published: over 5 years ago

10.18632/oncotarget.14843

Relationship between LINC00341 expression and cancer prognosis
Cited by: 13
Author(s): Meijian Liao, Bing Li, Shikuan Zhang, Qing Liu, Weijie Liao, Weidong Xie, Yaou Zhang
Software Mentions: 3
Published: over 7 years ago

10.1155/2015/981520

Identifying User Interaction Patterns in E-Textbooks
Cited by: 3
Author(s): Santeri Saarinen, Tomi Heimonen, Markku Turunen, Mirjamaija Mikkilä-Erdmann, Roope Raisamo, Norbert Erdmann, Sari Yrjänäinen, Tuuli Keskinen
Software Mentions: 3
Published: over 9 years ago

Projects: cran: cluster

Papers Mentioning cluster 416