cran: circlize | Projects | Ecosyste.ms: Papers

10.1371/journal.pone.0151043

A Comparative Analysis of Genetic Diversity and Structure in Jaguars (Panthera onca), Pumas (Puma concolor), and Ocelots (Leopardus pardalis) in Fragmented Landscapes of a Critical Mesoamerican Linkage Zone
Cited by: 40
Author(s): Claudia Wultsch, Lisette P. Waits, Marcella J. Kelly
Software Mentions: 3
Published: over 8 years ago

10.1186/s12974-017-0906-6

A systems pharmacology-based approach to identify novel Kv1.3 channel-dependent mechanisms in microglial activation
Cited by: 49
Author(s): Srikant Rangaraju, Syed Ali Raza, Andrea Pennati, Qiudong Deng, Eric B. Dammer, Duc M. Duong, Michael W. Pennington, Malú G. Tansey, James J. Lah, Ranjita Betarbet, Nicholas T. Seyfried, Aĺlan I. Levey
Software Mentions: 3
Published: over 7 years ago

10.3390/ijms22158193

Regulatory Network Analysis in Estradiol-Treated Human Endothelial Cells
Cited by: 0
Author(s): Daniel Pérez‐Cremades, Ana B. Paes, Xavier Vidal‐Gómez, Ana Mompeón, Carlos Hermenegildo, Susana Novella
Software Mentions: 3
Published: over 3 years ago

10.1038/s41598-018-23860-y

Systemic and specific effects of antihypertensive and lipid-lowering medication on plasma protein biomarkers for cardiovascular diseases
Cited by: 30
Author(s): Stefan Enroth, Varun Maturi, Malin Berggrund, Sofia Bosdotter Enroth, Aristidis Moustakas, Åsa Johansson, Ulf Gyllensten
Software Mentions: 3
Published: over 6 years ago

10.3390/antibiotics9060343

Studying the Gene Expression of Penicillium rubens Under the Effect of Eight Essential Oils
Cited by: 2
Author(s): Zuzana Kisová, Andrea Šoltýsová, Mária Bučková, Gábor Beke, Andrea Puškárová, Domenico Pangallo
Software Mentions: 3
Published: over 4 years ago

10.3390/ijms22073544

Distinct Age-Specific miRegulome Profiling of Isolated Small and Large Intestinal Epithelial Cells in Mice
Cited by: 6
Author(s): Jun-Young Lee, Attayeb Mohsen, Anik Banerjee, Louise D. McCullough, Kenji Mizuguchi, Motomu Shimaoka, Hiroshi Kiyono, Eun Jeong Park
Software Mentions: 2
Published: over 3 years ago

10.3389/fpls.2019.00952

Agronomic Performance and Nitrogen Fixation of Heirloom and Conventional Dry Bean Varieties Under Low-Nitrogen Field Conditions
Cited by: 30
Author(s): Jennifer Wilker, Alireza Navabi, Istvan Rajcan, Frédéric Marsolais, B. D. Hill, Davoud Torkamaneh, K. Peter Pauls
Software Mentions: 2
Published: over 5 years ago

10.1534/genetics.116.195776

Pervasive Behavioral Effects of MicroRNA Regulation in Drosophila
Cited by: 27
Author(s): João Picão-Osório, Inês Lago-Baldaia, Pedro Patraquim, Claudio R. Alonso
Software Mentions: 2
Published: over 7 years ago

10.1038/s41421-021-00286-x

The Cardamine enshiensis genome reveals whole genome duplication and insight into selenium hyperaccumulation and tolerance
Cited by: 11
Author(s): Chuying Huang, Hongqin Ying, Xibiao Yang, Yuan Gao, Tuo Li, Bo Wu, Mindong Ren, Zixiong Zhang, Jun Ding, Jianhua Gao, Dan Wen, Xingzhi Ye, Ling Liu, Huan Wang, Guogen Sun, Yi Zou, Nansheng Chen, Li Wang
Software Mentions: 2
Published: over 3 years ago

10.1093/gbe/evz073

The Unique Evolutionary Trajectory and Dynamic Conformations of DR and IR/DR-Coexisting Plastomes of the Early Vascular Plant Selaginellaceae (Lycophyte)
Cited by: 24
Author(s): Hongrui Zhang, Qiao‐Ping Xiang, Xian‐Chun Zhang
Software Mentions: 2
Published: over 5 years ago

10.1016/j.isci.2021.102383

No particular genomic features underpin the dramatic economic consequences of 17th century plague epidemics in Italy
Cited by: 11
Author(s): Andaine Seguin-Orlando, Caroline Costedoat, Clio Der Sarkissian, Stéfan Tzortzis, Célia Kamel, Norbert Telmon, Love Dalén, Catherine Thèves, Michel Signoli, Ludovic Orlando
Software Mentions: 2
Published: over 3 years ago

10.1038/s41419-021-03783-9

CG6015 controls spermatogonia transit-amplifying divisions by epidermal growth factor receptor signaling in Drosophila testes
Cited by: 7
Author(s): Jun Yu, Qianwen Zheng, Zhi-Ran Li, Yunhao Wu, Yangbo Fu, Xiaolong Wu, Dengfeng Lin, Cong Shen, Bo Zheng, Fei Sun
Software Mentions: 2
Published: over 3 years ago

10.3390/cancers11101485

Unraveling the Heterogeneous Mutational Signature of Spontaneously Developing Tumors in MLH1−/− Mice
Cited by: 7
Author(s): Yvonne Saara Gladbach, Leonie Wiegele, Mohamed Hamed, Anna-Marie Merkenschläger, Georg Fuellen, Christian Junghanß, Claudia Maletzki
Software Mentions: 2
Published: about 5 years ago

10.3390/cancers12102946

Divergent Resistance Mechanisms to Immunotherapy Explain Responses in Different Skin Cancers
Cited by: 6
Author(s): Emmanuel Dollinger, Daniel Bergman, Peijie Zhou, Scott X. Atwood, Qing Nie
Software Mentions: 2
Published: about 4 years ago

10.1371/journal.pone.0147608

Evidence of Partial Migration in a Large Coastal Predator: Opportunistic Foraging and Reproduction as Key Drivers?
Cited by: 66
Author(s): Mario Espinoza, Michelle R. Heupel, Andrew J. Tobin, Colin A. Simpfendorfer
Software Mentions: 2
Published: almost 9 years ago

10.1371/journal.pone.0195974

Genome-wide analysis of basic helix-loop-helix superfamily members in peach
Cited by: 34
Author(s): Chunhua Zhang, Ruchao Feng, Ruijuan Ma, Zhijun Shen, Zeyu Cai, Zhizhong Song, Bin Peng, Mingliang Yu
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0245971

Dimensions of social and political capital in interventions to improve household well-being: Implications for coffee-growing areas in southern Colombia
Cited by: 6
Author(s): Adriana Eugenia Suárez, Isabel Gutiérrez-Montes, Fausto Andrés Ortiz-Morea, Claudia Mercedes Ordoñez, Juan C. Suárez, Fernando Casanoves
Software Mentions: 2
Published: almost 4 years ago

10.1038/s41598-017-04412-2

Effect of high fat diet on phenotype, brain transcriptome and lipidome in Alzheimer’s model mice
Cited by: 65
Author(s): Kyong Nyon Nam, Anaïs Mounier, Cody M. Wolfe, Nicholas F. Fitz, Alexis Y. Carter, Emilie L. Castranio, Hafsa Kamboh, Valerie L. Reeves, Jianing Wang, Xianlin Han, Jonathan Schug, Iliya Lefterov, Radosveta Koldamova
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-018-27757-8

Selection of validated hypervariable regions is crucial in 16S-based microbiota studies of the female genital tract
Cited by: 95
Author(s): Simon Graspeuntner, Nathalie Loeper, Sven Künzel, John F. Baines, Jan Rupp
Software Mentions: 2
Published: over 6 years ago

10.18632/oncotarget.13139

FGFR3, as a receptor tyrosine kinase, is associated with differentiated biological functions and improved survival of glioma patients
Cited by: 10
Author(s): Zheng Wang, Chuanbao Zhang, Lihua Sun, Jingshan Liang, Xing Liu, Guanzhang Li, Kun Yao, Wei Zhang, Tao Jiang
Software Mentions: 2
Published: about 8 years ago

10.1038/s41598-019-55648-z

Genome-wide analysis of fatty acid desaturase genes in rice (Oryza sativa L.)
Cited by: 22
Author(s): E Zhiguo, Chen Chen, Jinyu Yang, Hanhua Tong, Tingting Li, Lei Wang, Hongqi Chen
Software Mentions: 2
Published: almost 5 years ago

10.1371/journal.pone.0199192

Genome-wide identification and classification of MYB superfamily genes in peach
Cited by: 41
Author(s): Chunhua Zhang, Ruijuan Ma, Jianlan Xu, Juan Yan, Lei Guo, Juan Song, Ruchao Feng, Mingliang Yu
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-020-61159-z

Genotypic characterization of multiple drug resistant Escherichia coli isolates from a pediatric cancer hospital in Egypt
Cited by: 11
Author(s): Reem Hassan, M. Tantawy, Nouran A. Gouda, Mariam G Elzayat, Sara Gabra, Amena Nabih, Aya A. Diab, Mohamed El-Hadidi, Usama Bakry, Mohamed R. Shoeb, Mervat Elanany, Lobna Shalaby, Ahmed Sayed
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pcbi.1006372

coTRaCTE predicts co-occurring transcription factors within cell-type specific enhancers
Cited by: 6
Author(s): Alena van Bömmel, Michael I. Love, Ho‐Ryun Chung, Martin Vingron
Software Mentions: 2
Published: about 6 years ago

10.1016/j.plasmid.2017.03.002

Ordering the mob: Insights into replicon and MOB typing schemes from analysis of a curated dataset of publicly available plasmids
Cited by: 63
Author(s): Alex Orlek, Hang Phan, Anna E. Sheppard, Michel Doumith, Matthew J. Ellington, Tim E. A. Peto, Derrick W. Crook, A Sarah Walker, Neil Woodford, Muna F. Anjum, Nicole Stoesser
Software Mentions: 2
Published: over 7 years ago

10.7717/peerj.12155

CBF transcription factors involved in the cold response of Camellia japonica (Naidong)
Cited by: 4
Author(s): Menglong Fan, Rui Zhou, Qinghua Liu, Yanan Sun
Software Mentions: 2
Published: about 3 years ago

10.1186/s13068-021-02014-9

Function of ORFC of the polyketide synthase gene cluster on fatty acid accumulation in Schizochytrium limacinum SR21
Cited by: 8
Author(s): Yanyan Shi, Zhe Chen, Yixin Li, Xingyu Cao, Lijie Yang, Yiyuan Xu, Zhipeng Li, Ning He
Software Mentions: 2
Published: over 3 years ago

10.1155/2020/5910823

Age-Related Immune Profile of the T Cell Receptor Repertoire, Thymic Recent Output Function, and miRNAs
Cited by: 10
Author(s): Yan Xu, Ling Xu, Cunte Chen, Yikai Zhang, Chengwu Zeng, Zhenyi Jin, Shaohua Chen, Bo Li, Xianfeng Zha, Zhinan Yin, Yangqiu Li
Software Mentions: 2
Published: almost 4 years ago

10.1128/mSystems.00346-20

Genetic Variation Bias toward Noncoding Regions and Secreted Proteins in the Rice Blast Fungus Magnaporthe oryzae
Cited by: 5
Author(s): Zhenhui Zhong, Meilian Chen, Lian‐Yu Lin, Ruiqi Chen, Dan Liŭ, Justice Norvienyeku, Huakun Zheng, Zonghua Wang
Software Mentions: 2
Published: over 4 years ago

10.1186/s12960-020-0463-4

Gender imbalance in executive management positions at the Mexican National Institutes of Health
Cited by: 9
Author(s): Lucero Soledad Rivera-Romano, Cristóbal Fresno, Enrique Hernández‐Lemus, Mireya Martínez-García, Maité Vallejo
Software Mentions: 2
Published: over 4 years ago

10.1186/s12870-020-02409-0

Transcriptomic and physiological analyses of rice seedlings under different nitrogen supplies provide insight into the regulation involved in axillary bud outgrowth
Cited by: 22
Author(s): Rongna Wang, Junjie Qian, Zhongming Fang, Jian Tang
Software Mentions: 2
Published: over 4 years ago

10.1186/s12870-020-02722-8

Population structure of Nepali spring wheat (Triticum aestivum L.) germplasm
Cited by: 7
Author(s): Kamal Khadka, Davoud Torkamaneh, Mina Kaviani, François Belzile, Manish N. Raizada, Alireza Navabi
Software Mentions: 2
Published: almost 4 years ago

10.1186/s12920-017-0246-5

Whole genome sequencing of one complex pedigree illustrates challenges with genomic medicine
Cited by: 14
Author(s): Fang Han, Yiyang Wu, Hui Yang, Margaret S. Yoon, Laura T. Jiménez-Barrón, David Mittelman, Reid Robison, Kai Wang, Gholson J. Lyon
Software Mentions: 2
Published: over 7 years ago

10.1186/s12864-017-4052-4

Genome-wide identification of novel intergenic enhancer-like elements: implications in the regulation of transcription in Plasmodium falciparum
Cited by: 10
Author(s): Suyog Ubhe, Mukul Rawat, Srikant Verma, Krishanpal Anamika, Krishanpal Karmodiya
Software Mentions: 2
Published: about 7 years ago

10.1186/s12859-019-3073-1

Intestinal microbiota domination under extreme selective pressures characterized by metagenomic read cloud sequencing and assembly
Cited by: 6
Author(s): Joyce B. Kang, Benjamin A. Siranosian, Eli L. Moss, Niaz Banaei, Tessa M. Andermann, Ami S. Bhatt
Software Mentions: 2
Published: almost 5 years ago

10.3389/fmicb.2021.637500

Single-Cell TCR Sequencing Reveals the Dynamics of T Cell Repertoire Profiling During Pneumocystis Infection
Cited by: 8
Author(s): Huqin Yang, Yishan Wang, Kan Zhai, Zhaohui Tong
Software Mentions: 2
Published: over 3 years ago

10.3389/fimmu.2021.597399

Immune Interaction Map of Human SARS-CoV-2 Target Genes: Implications for Therapeutic Avenues
Cited by: 4
Author(s): Karthikeyan Subbarayan, Kamatchi Ulagappan, Claudia Wickenhauser, Michael Bachmann, Barbara Seliger
Software Mentions: 2
Published: over 3 years ago

10.3389/fgene.2020.580782

Genetic Diversity and Population Structure of Asian and European Common Wheat Accessions Based on Genotyping-By-Sequencing
Cited by: 27
Author(s): Xin Yang, Binwen Tan, Haijiao Liu, Wei Zhu, Lili Xu, Yi Wang, Xing Fan, Sha Li, Haiqin Zhang, Jian Zeng, Dandan Wu, Yunfeng Jiang, Xigui Hu, Guoyue Chen, Yonghong Zhou, Houyang Kang
Software Mentions: 2
Published: about 4 years ago

10.1088/1748-9326/abc37a

Trading water: virtual water flows through interstate cereal trade in India
Cited by: 9
Author(s): Francesca Harris, Carole Dalin, Soledad Cuevas, Nandini Lakshmikantha, T. K. Adhya, Edward J. M. Joy, Pauline Scheelbeek, Benjamin Kayatz, Owen Nicholas, Bhavani Shankar, Alan D. Dangour, Rosemary Green
Software Mentions: 2
Published: almost 4 years ago

10.15252/embj.2020106174

Selective cross‐linking of coinciding protein assemblies by in‐gel cross‐linking mass spectrometry
Cited by: 24
Author(s): Johannes F. Hevler, Marie V. Lukassen, Alfredo Cabrera‐Orefice, Susanne Arnold, Matti F. Pronker, Vojtěch Franc, Albert J. R. Heck
Software Mentions: 2
Published: almost 4 years ago

10.1038/s41598-020-65766-8

Survey of drug resistance associated gene mutations in Mycobacterium tuberculosis, ESKAPE and other bacterial species
Cited by: 35
Author(s): Abhirupa Ghosh, Nidhi G. Saran, Sudipto Saha
Software Mentions: 1
Published: over 4 years ago

10.1186/s12864-019-5843-6

Directed Repeats Co-occur with Few Short-Dispersed Repeats in Plastid Genome of a Spikemoss, Selaginella vardei (Selaginellaceae, Lycopodiopsida)
Cited by: 11
Author(s): Hongrui Zhang, Xian‐Chun Zhang, Qiao‐Ping Xiang
Software Mentions: 1
Published: over 5 years ago

10.1016/j.redox.2021.101988

Nicotinamide provides neuroprotection in glaucoma by protecting against mitochondrial and metabolic dysfunction
Cited by: 63
Author(s): James R. Tribble, Amin Otmani, Shanshan Sun, Sevannah A. Ellis, Gloria Cimaglia, Rupali Vohra, Melissa Jöe, Emma Lardner, Abinaya Priya Venkataraman, Alberto Domínguez‐Vicent, Eirini Kokkali, Seungsoo Rho, Gauti Jóhannesson, Robert W. Burgess, Peter G. Fuerst, Rune Brautaset, Miriam Kolko, James E. Morgan, Jonathan G Crowston, Marcela Votruba, Pete A. Williams
Software Mentions: 1
Published: over 3 years ago

10.1534/g3.118.200552

A European Whitefish Linkage Map and Its Implications for Understanding Genome-Wide Synteny Between Salmonids Following Whole Genome Duplication
Cited by: 16
Author(s): Rishi De‐Kayne, Philine G. D. Feulner
Software Mentions: 1
Published: almost 6 years ago

10.1038/s42003-020-1086-y

Sequence-based genetic mapping of Cynodon dactylon Pers. reveals new insights into genome evolution in Poaceae
Cited by: 6
Author(s): Tilin Fang, Hongxu Dong, Shuhao Yu, Justin Q. Moss, Charles Fontanier, Dennis L. Martin, Jinmin Fu, Yanqi Wu
Software Mentions: 1
Published: over 4 years ago

10.3390/ijms22041625

Genetic Bias, Diversity Indices, Physiochemical Properties and CDR3 Motifs Divide Auto-Reactive from Allo-Reactive T-Cell Repertoires
Cited by: 2
Author(s): Oscar Haigh, Emma J. Grant, Thi H. O. Nguyen, Katherine Kedzierska, Matthew A. Field, John J. Miles
Software Mentions: 1
Published: almost 4 years ago

10.1007/s00401-019-02004-0

The new genetic landscape of Alzheimer’s disease: from amyloid cascade to genetically driven synaptic failure hypothesis?
Cited by: 114
Author(s): Pierre Dourlen, Devrim Kilinc, Nicolas Malmanche, Julien Chapuis, Jean‐Charles Lambert
Software Mentions: 1
Published: over 5 years ago

10.1038/hdy.2017.11

Strong population structure in a species manipulated by humans since the Neolithic: the European fallow deer (Dama dama dama)
Cited by: 25
Author(s): Karis Baker, Howard Gray, Veronika Ramovs, D Mertzanidou, Çiğdem Akın Pekşen, C. Can Bilgin, Naomi Sykes, A. Rus Hoelzel
Software Mentions: 1
Published: over 7 years ago

10.1038/s41398-017-0022-5

Gut microbiome populations are associated with structure-specific changes in white matter architecture
Cited by: 53
Author(s): Irene M. Ong, José G. Gonzalez, Sean J. McIlwain, Emily A. Sawin, Andrew Schoen, Nagesh Adluru, Andrew L. Alexander, John‐Paul J. Yu
Software Mentions: 1
Published: almost 7 years ago

10.1128/mBio.00838-21

An Egg-Derived Sulfated N -Acetyllactosamine Glycan Is an Antigenic Decoy of Influenza Virus Vaccines
Cited by: 7
Author(s): Jenna J. Guthmiller, Henry A. Utset, Carole Henry, Lei Li, Na Zheng, Weina Sun, Marcos Costa Vieira, Seth J. Zost, Min Huang, Scott E. Hensley, Sarah Cobey, Peter Palese, Patrick C. Wilson
Software Mentions: 1
Published: over 3 years ago

10.1007/s00429-019-01951-4

Large-scale plurimodal networks common to listening to, producing and reading word lists: an fMRI study combining task-induced activation and intrinsic connectivity in 144 right-handers
Cited by: 12
Author(s): Isabelle Hesling, Loïc Labache, Marc Joliot, Nathalie Tzourio‐Mazoyer
Software Mentions: 1
Published: about 5 years ago

10.3390/cancers13174417

Global Trends in Cancer Nanotechnology: A Qualitative Scientific Mapping Using Content-Based and Bibliometric Features for Machine Learning Text Classification
Cited by: 9
Author(s): Nuwan Indika Millagaha Gedara, Xuan Xu, Robert K. Delong, Santosh Aryal, Majid Jaberi-Douraki
Software Mentions: 1
Published: about 3 years ago

10.1038/s41419-017-0119-z

Notch1 is a prognostic factor that is distinctly activated in the classical and proneural subtype of glioblastoma and that promotes glioma cell survival via the NF-κB(p65) pathway
Cited by: 47
Author(s): Hai Long, Chen Zhang, Tao Li, Xuedong Zhou, Bo Liu, Shuai Li, Meng Zhu, Yu Lin, Shukun Yu, Kai Zhang, Biao Ren, Haolang Ming, Yubao Huang, Lei Chen, Pengfei Zhao, Hua Zhou, Tao Jiang, Xuejun Yang
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-021-90843-x

Inflammation-related plasma protein levels and association with adiposity measurements in young adults
Cited by: 9
Author(s): Susanna Klevebro, Sophia Björkander, Sandra Ekström, Simon Kebede Merid, Olena Gruzieva, Anders Mälarstig, Åsa Johansson, Inger Kull, Anna Bergström, Erik Melén
Software Mentions: 1
Published: over 3 years ago

10.1016/j.chom.2019.05.006

A Genetically Tractable, Natural Mouse Model of Cryptosporidiosis Offers Insights into Host Protective Immunity
Cited by: 63
Author(s): Adam Sateriale, Jan Šlapeta, Rodrigo P. Baptista, Julie B. Engiles, Jodi A. Gullicksrud, Gillian T. Herbert, Carrie F. Brooks, Emily M. Kugler, Jessica C. Kissinger, Christopher A. Hunter, Boris Striepen
Software Mentions: 1
Published: over 5 years ago

10.1038/s42003-021-02374-w

A split protease-E. coli ClpXP system quantifies protein–protein interactions in Escherichia coli cells
Cited by: 2
Author(s): Shengchen Wang, Faying Zhang, Meng Mei, Ting Wang, Yun Yao, Shihui Yang, Guimin Zhang, Yang Li
Software Mentions: 1
Published: over 3 years ago

10.7554/eLife.48212

Neighbor predation linked to natural competence fosters the transfer of large genomic regions in Vibrio cholerae
Cited by: 44
Author(s): Noémie Matthey, Sandrine Stutzmann, Candice Stoudmann, Nicolas Guex, Christian Iseli, Melanie Blokesch
Software Mentions: 1
Published: about 5 years ago

Projects: cran: circlize

Papers Mentioning circlize 260