cran: ape | Projects | Ecosyste.ms: Papers

10.1371/journal.pone.0119333

First Genome-Wide Association Study in an Australian Aboriginal Population Provides Insights into Genetic Risk Factors for Body Mass Index and Type 2 Diabetes
Cited by: 30
Author(s): Denise Anderson, Heather J. Cordell, Michaela Fakiola, Richard W. Francis, Genevieve Syn, Elizabeth S. H. Scaman, Elizabeth A. Davis, Simon J. Miles, Toby McLeay, Sarra E. Jamieson, Jenefer M. Blackwell
Software Mentions: 2
Published: over 9 years ago

10.3390/genes12010115

Whole Genome Analysis of Environmental Pseudomonas mendocina Strains: Virulence Mechanisms and Phylogeny
Cited by: 2
Author(s): Lidia Ruiz-Roldán, María de Toro, Yolanda Sáenz
Software Mentions: 2
Published: almost 4 years ago

10.1371/journal.pone.0012019

Senescence Is More Important in the Natural Lives of Long- Than Short-Lived Mammals
Cited by: 32
Author(s): Christopher Turbill, T. Ruf
Software Mentions: 2
Published: over 14 years ago

10.1371/journal.pone.0029027

Patterns of Interspecific Variation in the Heart Rates of Embryonic Reptiles
Cited by: 25
Author(s): Wei‐Guo Du, Yingqi Hua, Bo Zhao, Lígia Pizzatto, Xiang Ji, Richard Shine
Software Mentions: 2
Published: almost 13 years ago

10.1186/gb-2010-11-10-r107

Structure and dynamics of the pan-genome of Streptococcus pneumoniae and closely related species
Cited by: 320
Author(s): Claudio Donati, N. Luisa Hiller, Hervé Tettelin, Alessandro Muzzi, Nicholas J. Croucher, Samuel V. Angiuoli, Marco R. Oggioni, Julie C. Dunning Hotopp, Fang Hu, David R. Riley, Antonello Covacci, Tim Mitchell, Stephen D. Bentley, Mogens Kilian, Garth D. Ehrlich, Rino Rappuoli, E. Richard Moxon, Vega Masignani
Software Mentions: 2
Published: about 14 years ago

10.1186/s13059-017-1167-5

Genomic insights into divergence and dual domestication of cultivated allotetraploid cottons
Cited by: 89
Author(s): Lei Fang, Hao Gong, Yan Hu, Chunxiao Liu, Baoliang Zhou, Tao Huang, Yangkun Wang, Shuqi Chen, David D. Fang, Xinying Du, Hong Chen, Jiedan Chen, Sen Wang, Qiong Wang, Qun Wan, Bingliang Liu, Mengqiao Pan, Liming Chang, Huaitong Wu, Gaofu Mei, Dan Xiang, Xinghe Li, Caiping Cai, Xiefei Zhu, Z. Jeffrey Chen, Bin Han, Xiaoya Chen, Wangzhen Guo, Tianzhen Zhang, Xuehui Huang
Software Mentions: 2
Published: almost 8 years ago

10.1371/journal.pbio.3000341

Evolution of protein kinase substrate recognition at the active site
Cited by: 48
Author(s): David Bradley, Pedro Beltrão
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0208585

Porcine circovirus 2 (PCV-2) genotype update and proposal of a new genotyping methodology
Cited by: 120
Author(s): Giovanni Franzo, Joaquím Segalés
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pbio.3000494

Inferring the mammal tree: Species-level sets of phylogenies for questions in ecology, evolution, and conservation
Cited by: 551
Author(s): Nathan S. Upham, Jacob A. Esselstyn, Walter Jetz
Software Mentions: 2
Published: almost 5 years ago

10.1038/s41598-017-15391-9

Feeding capability in the extinct giant Siamogale melilutra and comparative mandibular biomechanics of living Lutrinae
Cited by: 13
Author(s): Z. Jack Tseng, Denise F. Su, Xiaoming Wang, Stuart C. White, Xueping Ji
Software Mentions: 2
Published: about 7 years ago

10.1371/journal.pone.0119327

Relating Sub-Surface Ice Features to Physiological Stress in a Climate Sensitive Mammal, the American Pika (Ochotona princeps)
Cited by: 28
Author(s): Jennifer L. Wilkening, Chris Ray, Johanna Varner
Software Mentions: 2
Published: over 9 years ago

10.1111/mec.14477

Genome‐wide mosaicism in divergence between zoonotic malaria parasite subpopulations with separate sympatric transmission cycles
Cited by: 16
Author(s): Paul Cliff Simon Divis, Craig W. Duffy, Khamisah Abdul Kadir, Balbir Singh, David J. Conway
Software Mentions: 2
Published: almost 7 years ago

10.1093/molbev/msab182

Gene Conversion Facilitates the Adaptive Evolution of Self-Resistance in Highly Toxic Newts
Cited by: 10
Author(s): Kerry L. Gendreau, Angela D. Hornsby, Michael T. J. Hague, Joel W. McGlothlin
Software Mentions: 2
Published: over 3 years ago

10.1093/gbe/evt174

Natural Selection for Operons Depends on Genome Size
Cited by: 20
Author(s): Paula Gabriela Núñez, Héctor Romero, Marisa Diana Farber, Eduardo P. C. Rocha
Software Mentions: 2
Published: about 11 years ago

10.1186/s12863-015-0258-0

Multiply to conquer: Copy number variations at Ppd-B1 and Vrn-A1 facilitate global adaptation in wheat
Cited by: 82
Author(s): Tobias Würschum, Philipp H. G. Boeven, Simon Langer, C. Friedrich H. Longin, Willmar L. Leiser
Software Mentions: 2
Published: over 9 years ago

10.1128/mSphere.00799-20

Homologous Recombination in <i>Clostridioides difficile</i> Mediates Diversification of Cell Surface Features and Transport Systems
Cited by: 4
Author(s): Hannah D. Steinberg, Evan S. Snitkin
Software Mentions: 2
Published: almost 4 years ago

10.1186/s12862-015-0320-6

Five major shifts of diversification through the long evolutionary history of Magnoliidae (angiosperms)
Cited by: 62
Author(s): Julien Massoni, Thomas L. P. Couvreur, Hervé Sauquet
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0194265

Sodium ion channel alkaloid resistance does not vary with toxicity in aposematic Dendrobates poison frogs: An examination of correlated trait evolution
Cited by: 5
Author(s): Michael L. Yuan, Ian Wang
Software Mentions: 2
Published: over 6 years ago

10.1093/gbe/evaa059

Single-Nucleotide Polymorphism-Based Genetic Diversity Analysis of Clinical Pseudomonas aeruginosa Isolates
Cited by: 11
Author(s): Uthayakumar Muthukumarasamy, Matthias Preuße, Adrian Kordes, Michal Koska, Monika Schniederjans, Ariane Khaledi, Susanne Häußler
Software Mentions: 2
Published: over 4 years ago

10.1038/s41598-021-92705-y

Telomeric DNA sequences in beetle taxa vary with species richness
Cited by: 10
Author(s): Daniela Prušáková, Vratislav Peška, Stano Pekár, Michal Bubeník, Lukáš Čížek, Aleš Bezděk, Radmila Čapková Frydrychová
Software Mentions: 2
Published: over 3 years ago

10.1002/ece3.4359

Laboulbeniales hyperparasites (Fungi, Ascomycota) of bat flies: Independent origins and host associations
Cited by: 15
Author(s): Danny Haelewaters, Rachel A. Page, Donald H. Pfister
Software Mentions: 2
Published: over 6 years ago

10.3390/ani10081401

Fast and Slow-Growing Management Systems: Characterisation of Broiler Caecal Microbiota Development throughout the Growing Period
Cited by: 11
Author(s): Laura Montoro-Dasi, Arantxa Villagrá, María de Toro, María Teresa Pérez‐Gracia, Santiago Vega, Clara Marín
Software Mentions: 2
Published: over 4 years ago

10.3897/phytokeys.173.60898

Evolutionary relationships, biogeography and morphological characters of Glinus (Molluginaceae), with special emphasis on the genus composition in Sub-Saharan Africa
Cited by: 1
Author(s): Alexander P. Sukhorukov, Alexander N. Sennikov, Marie Claire Veranso‐Libalah, Maria Kushunina, Maya V. Nilova, Roger Heath, Alison Heath, Yuri A. Mazei, Maxim A. Zaika
Software Mentions: 2
Published: over 3 years ago

10.1093/gbe/evab161

Comparing Ultraconserved Elements and Exons for Phylogenomic Analyses of Middle American Cichlids: When Data Agree to Disagree
Cited by: 14
Author(s): Fernando Alda, William B. Ludt, Diego J. Elías, Caleb D. McMahan, Prosanta Chakrabarty
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pone.0088834

Allometries of Maximum Growth Rate versus Body Mass at Maximum Growth Indicate That Non-Avian Dinosaurs Had Growth Rates Typical of Fast Growing Ectothermic Sauropsids
Cited by: 38
Author(s): Jan Werner, Eva Maria Griebeler
Software Mentions: 2
Published: over 10 years ago

10.1186/1471-2148-11-258

Molecular evolution under increasing transposable element burden in Drosophila: A speed limit on the evolutionary arms race
Cited by: 29
Author(s): Dean M. Castillo, Joshua Chang Mell, Kimberly S. Box, Justin P. Blumenstiel
Software Mentions: 2
Published: about 13 years ago

10.1186/1471-2148-12-70

Single copy nuclear gene analysis of polyploidy in wild potatoes (Solanum section Petota)
Cited by: 28
Author(s): Danying Cai, Flor Rodríguez, Yuanwen Teng, Cécile Ané, M. Bonierbale, Lukas A. Mueller, David M. Spooner
Software Mentions: 2
Published: over 12 years ago

10.3390/jof7090759

Population Diversity and Genetic Structure Reveal Patterns of Host Association and Anthropogenic Impact for the Globally Important Fungal Tree Pathogen Ceratocystis manginecans
Cited by: 2
Author(s): FeiFei Liu, Tuan A. Duong, Irene Barnes, ShuaiFei Chen
Software Mentions: 2
Published: about 3 years ago

10.7717/peerj.8360

Evolution of sexual size dimorphism in the wing musculature of Drosophila
Cited by: 4
Author(s): Claire Tracy, Janet Nguyen, Rayna Abraham, Troy R. Shirangi
Software Mentions: 2
Published: almost 5 years ago

10.7717/peerj.663

Microsatellite frequencies vary with body mass and body temperature in mammals, suggesting correlated variation in mutation rate
Cited by: 5
Author(s): William Amos, Laura N.S. Filipe
Software Mentions: 2
Published: about 10 years ago

10.1371/journal.pone.0177445

Genetic micro-epidemiology of malaria in Papua Indonesia: Extensive P. vivax diversity and a distinct subpopulation of asymptomatic P. falciparum infections
Cited by: 15
Author(s): Zuleima Pava, Rintis Noviyanti, Irene Handayuni, Hidayat Trimarsanto, Leily Trianty, Faustina Helena Burdam, Enny Kenangalem, Retno A. S. Utami, Yusrifar K. Tirta, Farah N. Coutrier, Jeanne Rini Poespoprodjo, Ric N. Price, Jutta Marfurt, Sarah Auburn
Software Mentions: 2
Published: over 7 years ago

10.7717/peerj.8271

Identifying model violations under the multispecies coalescent model using P2C2M.SNAPP
Cited by: 6
Author(s): Drew J. Duckett, Tara A. Pelletier, Bryan C. Carstens
Software Mentions: 2
Published: almost 5 years ago

10.1186/1748-5908-7-37

Validation of the theoretical domains framework for use in behaviour change and implementation research
Cited by: 2,579
Author(s): James E. Cane, Denise O’Connor, Susan Michie
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.pone.0023313

Cryptic Species in Tropic Sands - Interactive 3D Anatomy, Molecular Phylogeny and Evolution of Meiofaunal Pseudunelidae (Gastropoda, Acochlidia)
Cited by: 37
Author(s): Timea P. Neusser, Katharina M. Jörger, Michael Schrödl
Software Mentions: 2
Published: about 13 years ago

10.1371/journal.pone.0122412

Niche Suitability Affects Development: Skull Asymmetry Increases in Less Suitable Areas
Cited by: 13
Author(s): Renan Maestri, Rodrigo Fornel, Daniel Galiano, Thales Renato Ochotorena de Freitas
Software Mentions: 2
Published: over 9 years ago

10.3390/microorganisms9071389

SARS-CoV-2 Portrayed against HIV: Contrary Viral Strategies in Similar Disguise
Cited by: 5
Author(s): Ralf Duerr, Keaton M. Crosse, Ana M. Valero-Jimenez, Meike Dittmann
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pone.0027966

Transcriptomic Analyses during the Transition from Biomass Production to Lipid Accumulation in the Oleaginous Yeast Yarrowia lipolytica
Cited by: 116
Author(s): Nicolas Morin, Julien Cescut, Athanasios Béopoulos, Gaëlle Lelandais, Véronique Le Berre, Jean‐Louis Uribelarrea, Carole Molina-Jouve, Jean‐Marc Nicaud
Software Mentions: 2
Published: almost 13 years ago

10.1371/journal.pone.0054341

Species' Life-History Traits Explain Interspecific Variation in Reservoir Competence: A Possible Mechanism Underlying the Dilution Effect
Cited by: 75
Author(s): Zheng Huang, Willem F. de Boer, Frank van Langevelde, Valérie A. Olson, Tim M. Blackburn, Herbert H. T. Prins
Software Mentions: 2
Published: almost 12 years ago

10.1371/journal.pone.0147295

Earliest “Domestic” Cats in China Identified as Leopard Cat (Prionailurus bengalensis)
Cited by: 21
Author(s): Jean‐Denis Vigne, Allowen Evin, Thomas Cucchi, Lingling Dai, Chong Yu, Songmei Hu, Nicolas Soulages, Weilin Wang, Zhongchang Sun, Gao Jiang-tao, Keith Dobney, Jing Yuan
Software Mentions: 2
Published: almost 9 years ago

10.1371/journal.pone.0124625

Coalescent-Based Species Delimitation Approach Uncovers High Cryptic Diversity in the Cosmopolitan Lichen-Forming Fungal Genus Protoparmelia (Lecanorales, Ascomycota)
Cited by: 58
Author(s): Garima Singh, Francesco Dal Grande, Pradeep K. Divakar, Otte Juergen, Steven D. Leavitt, Katarzyna Szczepańska, Ana Crespo, Vı́ctor J. Rico, André Aptroot, Marcela Eugenia da Silva Cáceres, H. Thorsten Lumbsch, Imke Schmitt
Software Mentions: 2
Published: over 9 years ago

10.1002/ieam.4207

Correcting for Phylogenetic Autocorrelation in Species Sensitivity Distributions
Cited by: 11
Author(s): Dwayne R. J. Moore, Colleen D. Priest, Nika Galić, Richard A. Brain, Sara Rodney
Software Mentions: 2
Published: about 5 years ago

10.7717/peerj.11459

Integrative species delimitation based on COI, ITS, and morphological evidence illustrates a unique evolutionary history of the genus <i>Paracercion</i> (Odonata: Coenagrionidae)
Cited by: 9
Author(s): Haiguang Zhang, Xin Ning, Yu Xin, Wenjun Bu
Software Mentions: 2
Published: over 3 years ago

10.1002/ece3.4935

Patterns of sexual size dimorphism in stingless bees: Testing Rensch’s rule and potential causes in highly eusocial bees (Hymenoptera: Apidae, Meliponini)
Cited by: 9
Author(s): José Javier G. Quezada‐Euán, Salomón Sanabria‐Urbán, Corey Shepard. Smith, Raúl Cueva del Castillo
Software Mentions: 2
Published: almost 6 years ago

10.3389/fgene.2019.00989

Metabolic Overlap in Environmentally Diverse Microbial Communities
Cited by: 29
Author(s): Eric R. Hester, Mike S. M. Jetten, Cornelia U. Welte, Sebastian Lücker
Software Mentions: 2
Published: about 5 years ago

10.3389/fgene.2019.00664

Comparative Transcriptome Analyses Reveal the Role of Conserved Function in Electric Organ Convergence Across Electric Fishes
Cited by: 3
Author(s): Ake Liu, Funan He, Jingqi Zhou, Yangyun Zou, Zhixi Su, Xun Gu
Software Mentions: 2
Published: over 5 years ago

10.1186/s13568-021-01259-9

Comparative study of growth performance, nutrient digestibility, and ruminal and fecal bacterial community between yaks and cattle-yaks raised by stall-feeding
Cited by: 13
Author(s): Qindan Dai, Jian Ma, Guang Cao, Rui Hu, Yixiao Zhu, Guangyang Li, Huawei Zou, Zhisheng Wang, Quanhui Peng, Bai Xue, Lizhi Wang
Software Mentions: 2
Published: over 3 years ago

10.1186/1471-2148-9-238

Brain structure evolution in a basal vertebrate clade: evidence from phylogenetic comparative analysis of cichlid fishes
Cited by: 65
Author(s): Alejandro González-Voyer, Svante Winberg, Niclas Kolm
Software Mentions: 2
Published: almost 16 years ago

10.1186/s12862-017-0959-2

Unravelling mummies: cryptic diversity, host specificity, trophic and coevolutionary interactions in psyllid – parasitoid food webs
Cited by: 16
Author(s): Aidan A. G. Hall, Martin J. Steinbauer, Gary S. Taylor, Scott N. Johnson, James M. Cook, Markus Riegler
Software Mentions: 2
Published: over 7 years ago

10.1186/s12859-017-1753-2

Quantification of tumour evolution and heterogeneity via Bayesian epiallele detection
Cited by: 13
Author(s): James E. Barrett, Andrew Feber, Javier Herrero, Miljana Tanić, Gareth A. Wilson, Charles Swanton, Stephan Beck
Software Mentions: 2
Published: over 7 years ago

10.1002/ece3.2529

Soil phosphorus heterogeneity promotes tree species diversity and phylogenetic clustering in a tropical seasonal rainforest
Cited by: 16
Author(s): Wumei Xu, Xiuqin Ci, Song Cai-Yun 、, Tianhua He, Wenfu Zhang, Qiao‐Ming Li, Jie Li
Software Mentions: 2
Published: about 8 years ago

10.1093/jxb/eru218

A broad survey of hydraulic and mechanical safety in the xylem of conifers
Cited by: 130
Author(s): Pauline S. Bouche, Maximilian Larter, Jean‐Christophe Domec, Régis Burlett, Peter Gasson, Steven Jansen, Sylvain Delzon
Software Mentions: 2
Published: over 10 years ago

10.7717/peerj.2598

Evolution of genes involved in feeding preference and metabolic processes in Calliphoridae (Diptera: Calyptratae)
Cited by: 3
Author(s): Gisele Antoniazzi Cardoso, Marco Antonio Tonus Marinho, Raquel Dietsche Monfardini, Ana Maria Lima de Azeredo-Espin, Tatiana Teixeira Torres
Software Mentions: 2
Published: about 8 years ago

10.7717/peerj.10475

A review of the carotid artery and facial nerve canal systems in extant turtles
Cited by: 21
Author(s): Yann Rollot, Serjoscha Evers, Walter G. Joyce
Software Mentions: 2
Published: almost 4 years ago

10.1371/journal.pone.0033649

Host Shifts from Lamiales to Brassicaceae in the Sawfly Genus Athalia
Cited by: 21
Author(s): Sebastian E. W. Opitz, Jean‐Luc Boevé, Zoltán T. Nagy, Gontran Sonet, Frank Koch, Caroline Müller
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.ppat.1007092

Functional analysis of African Xanthomonas oryzae pv. oryzae TALomes reveals a new susceptibility gene in bacterial leaf blight of rice
Cited by: 59
Author(s): Tuan Hiep Tran, Álvaro L. Pérez‐Quintero, Issa Wonni, Sara C. D. Carpenter, Yu Yi, Li Wang, Jan E. Leach, Valérie Verdier, Sébastien Cunnac, Adam J. Bogdanove, Ralf Koebnik, M. Hutin, Boris Szurek
Software Mentions: 2
Published: over 6 years ago

10.1098/rsob.160132

Neocortex expansion is linked to size variations in gene families with chemotaxis, cell–cell signalling and immune response functions in mammals
Cited by: 0
Author(s): Atahualpa Castillo-Morales, Jimena Monzón‐Sandoval, Alexandra A. de Sousa, Araxi O. Urrutia, Humberto Gutiérrez
Software Mentions: 2
Published: about 8 years ago

10.1111/eva.12926

Biodiversity inventory of the grey mullets (Actinopterygii: Mugilidae) of the Indo‐Australian Archipelago through the iterative use of DNA‐based species delimitation and specimen assignment methods
Cited by: 18
Author(s): Erwan Delrieu‐Trottin, Jean‐Dominique Durand, Gino V. Limmon, Tedjo Sukmono, Kadarusman, Hagi Yulia Sugeha, Wei‐Jen Chen, F. Busson, Philippe Borsa, Hadi Dahruddin, Sopian Sauri, Yuli Fitriana, Mochamad Syamsul Arifin Zein, Régis Hocdé, Laurent Pouyaud, Philippe Keith, Daisy Wowor, Dirk Steinke, Robert Hanner, Nicolas Hubert
Software Mentions: 2
Published: almost 5 years ago

10.7717/peerj.823

Wing bone laminarity is not an adaptation for torsional resistance in bats
Cited by: 22
Author(s): Andrew H. Lee, Erin L.R. Simons
Software Mentions: 2
Published: over 9 years ago

10.1038/s41598-019-45888-4

Brain evolution in Proboscidea (Mammalia, Afrotheria) across the Cenozoic
Cited by: 12
Author(s): Julien Benoît, Lucas J. Legendre, Rodolphe Tabuce, Theodor Obadă, Vladislav Mararescul, Paul R. Manger
Software Mentions: 2
Published: over 5 years ago

10.1186/s12885-015-1077-4

Tumor evolution and intratumor heterogeneity of an epithelial ovarian cancer investigated using next-generation sequencing
Cited by: 75
Author(s): Jung‐Yun Lee, Jihee Yoon, Boyun Kim, Soochi Kim, Min A Kim, Hee‐Jung Lim, Duhee Bang, Yong Sang Song
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0219908

Trait-based plant ecology a flawed tool in climate studies? The leaf traits of wild olive that pattern with climate are not those routinely measured
Cited by: 8
Author(s): Jalal Kassout, Jean‐Frédéric Terral, J. Hodgson, Mohammed Ater
Software Mentions: 2
Published: over 5 years ago

10.1098/rspb.2015.0598

Hosts of avian brood parasites have evolved egg signatures with elevated information content
Cited by: 33
Author(s): Eleanor M. Caves, Martin Stevens, Edwin S. Iversen, Claire N. Spottiswoode
Software Mentions: 2
Published: over 9 years ago

10.7717/peerj.4495

A genome-wide investigation of microsatellite mismatches and the association with body mass among bird species
Cited by: 2
Author(s): Haiying Fan, Weibin Guo
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0038357

Deep-Sea Origin and In-Situ Diversification of Chrysogorgiid Octocorals
Cited by: 48
Author(s): Eric Pante, Arnaud Couloux, Corinne Cruaud, Catherine S. McFadden, Sarah Samadi, Les Watling
Software Mentions: 2
Published: over 12 years ago

10.1098/rspb.2017.1831

Trunk dental tissue evolved independently from underlying dermal bony plates but is associated with surface bones in living odontode-bearing catfish
Cited by: 17
Author(s): Carlos Rivera-Rivera, Juan I. Montoya‐Burgos
Software Mentions: 2
Published: about 7 years ago

10.1371/journal.pone.0034592

Spatio-Temporal Differentiation and Sociality in Spiders
Cited by: 16
Author(s): Jessica Purcell, João Vasconcellos‐Neto, Marcelo O. Gonzaga, Jeffrey Fletcher, Leticia Avilés
Software Mentions: 2
Published: over 12 years ago

10.1186/s12936-016-1320-8

Where chloroquine still works: the genetic make-up and susceptibility of Plasmodium vivax to chloroquine plus primaquine in Bhutan
Cited by: 21
Author(s): Sonam Wangchuk, Tobgyel Drukpa, Kinley Penjor, Tashi Peldon, Yeshey Dorjey, Kunzang Dorji, Vishal Chhetri, Hidayat Trimarsanto, Sheren To, Amanda K. Murphy, Lorenz von Seidlein, Ric N. Price, Sarah Auburn
Software Mentions: 2
Published: over 8 years ago

10.1111/eva.12173

Limitations to estimating bacterial cross‐species transmission using genetic and genomic markers: inferences from simulation modeling
Cited by: 10
Author(s): Julio A. Benavides, Paul C. Cross, Gordon Luikart, Scott Creel
Software Mentions: 2
Published: over 10 years ago

10.1111/eva.12675

A century of genetic variation inferred from a persistent soil‐stored seed bank
Cited by: 11
Author(s): Jennifer L. Summers, Brittany M. Bernik, Colin J. Saunders, J. S. McLachlan, Michael J. Blum
Software Mentions: 2
Published: over 6 years ago

10.1186/s12862-019-1352-0

Reduced bonobo MHC class I diversity predicts a reduced viral peptide binding ability compared to chimpanzees
Cited by: 11
Author(s): Vincent Maibach, Linda Vigilant
Software Mentions: 2
Published: almost 6 years ago

10.1186/2041-9139-6-4

Evolution of eumalacostracan development—new insights into loss and reacquisition of larval stages revealed by heterochrony analysis
Cited by: 13
Author(s): Günther Jirikowski, Carsten Wolff, Stefan Richter
Software Mentions: 2
Published: almost 10 years ago

10.1371/journal.pone.0031413

The Highly Virulent 2006 Norwegian EHEC O103:H25 Outbreak Strain Is Related to the 2011 German O104:H4 Outbreak Strain
Cited by: 33
Author(s): Trine M. L’Abée-Lund, Hannah Joan Jørgensen, Kristin O’Sullivan, Jon Bohlin, Goro Ligård, Per Einar Granum, Toril Lindbäck
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.pone.0052853

Global Ecological Pattern of Ammonia-Oxidizing Archaea
Cited by: 80
Author(s): Huiluo Cao, Jean‐Christophe Auguet, Ji‐Dong Gu
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pone.0213126

Nonlinear diversification rates of linguistic phylogenies over the Holocene
Cited by: 2
Author(s): Marcus J. Hamilton, Robert Walker
Software Mentions: 2
Published: over 5 years ago

10.3390/ijerph16214218

Evaluation of the Human Interference on the Microbial Diversity of Poyang Lake Using High-Throughput Sequencing Analyses
Cited by: 5
Author(s): Haokuan Qin, Lanyue Cui, Xinyi Cao, Qian Lv, Tingtao Chen
Software Mentions: 2
Published: about 5 years ago

10.1002/ece3.4674

Hibernation in bats (Mammalia: Chiroptera) did not evolve through positive selection of leptin
Cited by: 8
Author(s): Margaret E. Lazzeroni, Frank T. Burbrink, Nancy B. Simmons
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0073431

Conservation Actions Based on Red Lists Do Not Capture the Functional and Phylogenetic Diversity of Birds in Brazil
Cited by: 33
Author(s): José Hidasi‐Neto, Rafael Loyola, Marcus V. Cianciaruso
Software Mentions: 2
Published: about 11 years ago

10.3390/ijerph17093104

The Gut Microbiota of the Egyptian Mongoose as an Early Warning Indicator of Ecosystem Health in Portugal
Cited by: 3
Author(s): Mónica V. Cunha, Teresa Albuquerque, Patrícia Themudo, Carlos Fonseca, Victor Bandeira, Luís Miguel Rosalino
Software Mentions: 2
Published: over 4 years ago

10.1098/rsos.170446

Host association and selection on salivary protein genes in bed bugs and related blood-feeding ectoparasites
Cited by: 6
Author(s): Benoit Talbot, Ondřej Balvín, Maarten J. Vonhof, Hugh G. Broders, Brock Fenton, Nusha Keyghobadi
Software Mentions: 2
Published: over 7 years ago

10.1186/s13071-015-0952-9

Molecular analyses on host-seeking black flies (Diptera: Simuliidae) reveal a diverse assemblage of Leucocytozoon (Apicomplexa: Haemospororida) parasites in an alpine ecosystem
Cited by: 25
Author(s): Courtney C. Murdock, Peter H. Adler, J. Howard Frank, Susan L. Perkins
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0226326

Phylogeographic analyses point to long-term survival on the spot in micro-endemic Lycian salamanders
Cited by: 6
Author(s): Michael Veith, Bayram Göçmen, Konstantinos Sotiropoulos, Karolos Eleftherakos, Stefan Lötters, Olaf Godmann, Mert Karış, Anil Oğuz, Sarah Ehl
Software Mentions: 2
Published: almost 5 years ago

10.1098/rsos.180492

Mammalian chromosome–telomere length dynamics
Cited by: 8
Author(s): Amy R. Klegarth, Dan T. A. Eisenberg
Software Mentions: 2
Published: over 6 years ago

10.1093/sysbio/syw028

A Rapid and Scalable Method for Multilocus Species Delimitation Using Bayesian Model Comparison and Rooted Triplets
Cited by: 51
Author(s): Tomochika Fujisawa, Amr Aswad, Timothy G. Barraclough
Software Mentions: 2
Published: over 8 years ago

10.1098/rsos.190387

Congruence, fossils and the evolutionary tree of rodents and lagomorphs
Cited by: 41
Author(s): Robert J. Asher, Martin R. Smith, Aime H. Rankin, Robert J. Emry
Software Mentions: 2
Published: over 5 years ago

10.1098/rsos.190569

Testing for a facultative locomotor mode in the acquisition of archosaur bipedality
Cited by: 15
Author(s): Luke R. Grinham, Collin S. VanBuren, David Norman
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-019-52207-4

Road related pollutants induced DNA damage in dragonfly nymphs (Odonata, Anisoptera) living in highway sedimentation ponds
Cited by: 10
Author(s): Sondre Meland, Tânia Gomes, Karen Koefoed Petersen, Johnny Peter Håll, Espen Lund, Alfhild Kringstad, Merete Grung
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pone.0052245

Using Phylogenetic and Coalescent Methods to Understand the Species Diversity in the Cladia aggregata Complex (Ascomycota, Lecanorales)
Cited by: 53
Author(s): Sittiporn Parnmen, Achariya Rangsiruji, Pachara Mongkolsuk, Kansri Boonpragob, Aparna Nutakki, H. Thorsten Lumbsch
Software Mentions: 2
Published: almost 12 years ago

10.1186/s12862-018-1324-9

Diversity and evolution of the transposable element repertoire in arthropods with particular reference to insects
Cited by: 117
Author(s): Malte Petersen, David Armisén, Richard A. Gibbs, Lars Hering, Abderrahman Khila, Georg Mayer, Stephen Richards, Oliver Niehuis, Bernhard Misof
Software Mentions: 2
Published: almost 6 years ago

10.2807/1560-7917.ES.2019.24.32.1800675

Molecular and epidemiological characteristics of human Puumala and Dobrava-Belgrade hantavirus infections, Germany, 2001 to 2017
Cited by: 28
Author(s): Mirko Faber, Detlev H. Krüger, Brita Auste, Klaus Stark, Jörg Hofmann, Sabrina Weiß
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0198237

The changing views on the evolutionary relationships of extant Salamandridae (Amphibia: Urodela)
Cited by: 13
Author(s): Michael Veith, Sergé Bogaerts, Frank Pasmans, Sarah Kieren
Software Mentions: 2
Published: over 6 years ago

10.1186/s12862-021-01836-3

Base-substitution mutation rate across the nuclear genome of Alpheus snapping shrimp and the timing of isolation by the Isthmus of Panama
Cited by: 3
Author(s): Katherine Silliman, Jane L. Indorf, Nancy Knowlton, William E. Browne, Carla Hurt
Software Mentions: 2
Published: over 3 years ago

10.1186/1471-2164-15-823

A powerful tool for genome analysis in maize: development and evaluation of the high density 600 k SNP genotyping array
Cited by: 209
Author(s): Sandra Unterseer, Eva Bauer, Georg Haberer, Michael Seidel, Carsten Knaak, Milena Ouzunova, Thomas Meitinger, Tim M. Strom, R. Fries, Hubert Pausch, Christofer Bertani, Alessandro Davassi, Klaus Mayer, Chris‐Carolin Schön
Software Mentions: 2
Published: about 10 years ago

10.1186/1471-2148-13-191

Transitions between Andean and Amazonian centers of endemism in the radiation of some arboreal rodents
Cited by: 36
Author(s): Nathan S. Upham, Reed Ojala-Barbour, Jorge Brito, Paúl M. Velazco, Bruce D. Patterson
Software Mentions: 2
Published: about 11 years ago

10.1038/s41598-019-55822-3

Sperm quality and quantity evolve through different selective processes in the Phasianidae
Cited by: 9
Author(s): Wen Bo Liao, Mao Jun Zhong, Stefan Lüpold
Software Mentions: 2
Published: almost 5 years ago

10.1371/journal.pone.0132091

Biogeography of Mediterranean Hotspot Biodiversity: Re-Evaluating the 'Tertiary Relict' Hypothesis of Macaronesian Laurel Forests
Cited by: 64
Author(s): Paulina Kondraskov, Nicole Schütz, Christina Schüßler, Miguel Menezes de Sequeira, Arnoldo Santos Guerra, Juli Caujapé‐Castells, Ruth Jaén‐Molina, Águedo Marrero-Rodríguez, Marcus A. Koch, H. Peter Linder, Johanna Kovar-Eder, Mike Thiv
Software Mentions: 2
Published: over 9 years ago

10.3389/fpls.2021.638650

Resolving Recalcitrant Clades in the Pantropical Ochnaceae: Insights From Comparative Phylogenomics of Plastome and Nuclear Genomic Data Derived From Targeted Sequencing
Cited by: 9
Author(s): Julio V. Schneider, Juraj Paule, Tanja Jungcurt, Domingos Cardoso, André M. Amorim, Thomas Berberich, Georg Zizka
Software Mentions: 2
Published: almost 4 years ago

10.1186/1471-2164-11-71

Relationship between operon preference and functional properties of persistent genes in bacterial genomes
Cited by: 24
Author(s): Marit S Bratlie, Jostein Johansen, Finn Drabløs
Software Mentions: 2
Published: almost 15 years ago

10.1016/j.dib.2020.105284

Bioinformatic tools for tRNA gene analyses in mitochondrial DNA sequence data
Cited by: 1
Author(s): Е. В. Романова, Yu. S. Bukin, D. Yu. Sherbakov
Software Mentions: 2
Published: over 4 years ago

10.1016/j.cub.2009.08.056

Horizontal Gene Transfer of the Secretome Drives the Evolution of Bacterial Cooperation and Virulence
Cited by: 200
Author(s): Teresa Nogueira, Daniel J. Rankin, Marie Touchon, François Taddéi, Sam P. Brown, Eduardo P. C. Rocha
Software Mentions: 2
Published: about 15 years ago

10.3390/v12010111

Host Range Evolution of Potyviruses: A Global Phylogenetic Analysis
Cited by: 29
Author(s): Benoît Moury, Cécile Desbiez
Software Mentions: 2
Published: almost 5 years ago

Projects: cran: ape

Papers Mentioning ape 918