cran: ape | Projects | Ecosyste.ms: Papers

10.1186/s12863-017-0553-z

Whole genome population genetics analysis of Sudanese goats identifies regions harboring genes associated with major traits
Cited by: 24
Author(s): Siham A. Rahmatalla, Danny Arends, Monika Reißmann, Ammar Said Ahmed, Klaus Wimmers, Henry Reyer, Gudrun A. Brockmann
Software Mentions: 4
Published: about 7 years ago

10.1186/s12864-019-5844-5

Genomic erosion and extensive horizontal gene transfer in gut-associated Acetobacteraceae
Cited by: 28
Author(s): Brown Bp, Jennifer J. Wernegreen
Software Mentions: 4
Published: over 5 years ago

10.1186/s12864-021-07555-9

Genome sequence, transcriptome, and annotation of rodent malaria parasite Plasmodium yoelii nigeriensis N67
Cited by: 6
Author(s): Cui Zhang, Cihan Oguz, Sue Huse, Xia Lu, Jian Wu, Yu‐Chih Peng, Margaret Caroline MacHin Smith, Jack Chen, Carole A. Long, Justin Lack, Xin‐zhuan Su
Software Mentions: 4
Published: over 3 years ago

10.1186/s12864-015-2146-4

Extracting phylogenetic signal and accounting for bias in whole-genome data sets supports the Ctenophora as sister to remaining Metazoa
Cited by: 134
Author(s): Marek L. Borowiec, Ernest K. Lee, Joanna C. Chiu, David C. Plachetzki
Software Mentions: 4
Published: about 9 years ago

10.1186/s12864-015-1391-x

Sequencing the CHO DXB11 genome reveals regional variations in genomic stability and haploidy
Cited by: 73
Author(s): Christian Schrøder Kaas, Claus Kristensen, Michael J Betenbaugh, Mikael Rørdam Andersen
Software Mentions: 4
Published: over 9 years ago

10.1186/s12870-020-02744-2

Application of genome-wide insertion/deletion markers on genetic structure analysis and identity signature of Malus accessions
Cited by: 6
Author(s): Xuan Wang, Fei Shen, Yuan Gao, Kun Wang, Ruiting Chen, Jun Luo, Lili Yang, Xi Zhang, Changwei Qiu, Wei Li, Ting Wu, Xuefeng Xu, Yi Wang, Cong Peng, Zhenhai Han, Xinzhong Zhang
Software Mentions: 4
Published: almost 4 years ago

10.1186/s12870-019-2193-0

Variation in plastid genomes in the gynodioecious species Silene vulgaris
Cited by: 7
Author(s): Manuela Krüger, Oushadee A. J. Abeyawardana, Miloslav Juříček, Claudia Krüger, Helena Štorchová
Software Mentions: 4
Published: almost 5 years ago

10.1186/s12870-015-0663-6

Mango (Mangifera indica L.) germplasm diversity based on single nucleotide polymorphisms derived from the transcriptome
Cited by: 40
Author(s): Amir Sherman, Mor Rubinstein, Ravit Eshed, Miri Benita, Mazal Ish-Shalom, Michal Sharabi-Schwager, Ada Rozen, David Saada, Yuval Cohen, Ron Ophir
Software Mentions: 4
Published: about 9 years ago

10.1186/1746-6148-9-58

Impact of genetic variation and geographic distribution of porcine reproductive and respiratory syndrome virus on infectivity and pig growth
Cited by: 7
Author(s): Bouabid Badaoui, Roberto Grande, Stefano Calza, María C. Cecere, M. Luini, Alessandra Stella, Sara Botti
Software Mentions: 4
Published: over 11 years ago

10.1186/s13062-020-00287-y

Systematic evaluation of supervised machine learning for sample origin prediction using metagenomic sequencing data
Cited by: 11
Author(s): Chih-Yu Chen, Andrea D. Tyler
Software Mentions: 4
Published: almost 4 years ago

10.1098/rsbl.2013.0687

The evolution of cerebellum structure correlates with nest complexity
Cited by: 49
Author(s): Zachary J. Hall, Sally E. Street, Susan D. Healy
Software Mentions: 4
Published: almost 11 years ago

10.1098/rsbl.2020.0299

Indirect genetic control of migration in a salmonid fish
Cited by: 6
Author(s): Suzanne J. Kelson, Stephanie M. Carlson, Michael R. Miller
Software Mentions: 4
Published: over 4 years ago

10.1186/s13058-017-0920-8

Establishing and characterizing patient-derived xenografts using pre-chemotherapy percutaneous biopsy and post-chemotherapy surgical samples from a prospective neoadjuvant breast cancer study
Cited by: 53
Author(s): Jia Yu, Bo Qin, Ann M. Moyer, Jason P. Sinnwell, Kevin J. Thompson, John A. Copland, Laura A. Marlow, James L. Miller, Ping Yin, Bowen Gao, Katherine Minter-Dykhouse, Xiaojia Tang, Sarah A. McLaughlin, Alvaro Moreno-Aspitia, Anthony Schweitzer, Yan Lü, J. C. Hubbard, Donald W. Northfelt, Richard Gray, Katie N. Hunt, Amy Lynn Conners, Vera J. Suman, Krishna R. Kalari, James N. Ingle, Zhenkun Lou, Daniel W. Visscher, Richard M. Weinshilboum, Judy C. Boughey, Matthew P. Goetz, Liewei Wang
Software Mentions: 4
Published: almost 7 years ago

10.1007/s00262-020-02833-z

Early changes in the circulating T cells are associated with clinical outcomes after PD-L1 blockade by durvalumab in advanced NSCLC patients
Cited by: 14
Author(s): Elliot Naidus, Jérôme Bouquet, David Y. Oh, Timothy J. Looney, Hai Yang, Lawrence Fong, Nathan Standifer, Li Zhang
Software Mentions: 4
Published: almost 4 years ago

10.3390/md18020078

Metabolomic Insights into Marine Phytoplankton Diversity
Cited by: 17
Author(s): Rémy Marcellin-Gros, Gwenaël Piganeau, Didier Stien
Software Mentions: 4
Published: almost 5 years ago

10.1099/mgen.0.000543

The structure and diversity of strain-level variation in vaginal bacteria
Cited by: 8
Author(s): Brett A. Tortelli, Amanda L. Lewis, Justin C. Fay
Software Mentions: 4
Published: over 3 years ago

10.1128/MRA.00832-19

Draft Genome Sequences of Enterococcus faecalis Strains Isolated from Healthy Japanese Individuals
Cited by: 2
Author(s): Kazuki Tanaka, Tsubasa Watabe, Koichi Kato, Tomoya Tsukimi, Mitsuhiko Sato, Toshitaka Odamaki, Masaru Tomita, Shinji Fukuda
Software Mentions: 4
Published: about 5 years ago

10.1186/s40168-020-0788-1

Gastric bypass surgery in a rat model alters the community structure and functional composition of the intestinal microbiota independently of weight loss
Cited by: 37
Author(s): Sven-Bastiaan Haange, Nico Jehmlich, Ute Krügel, Constantin A. Hintschich, Dorothee Wehrmann, Mohammed K. Hankir, Florian Seyfried, Jean Froment, Thomas Hübschmann, Susann Müller, Dirk K. Wissenbach, Kang Kang, Christian Buettner, Gianni Panagiotou, Matthias Noll, Ulrike Rolle-Kampczyk, Wiebke Fenske, Martin von Bergen
Software Mentions: 4
Published: almost 5 years ago

10.1186/s40168-019-0707-5

Comparison of the microbiomes of two drinking water distribution systems—with and without residual chloramine disinfection
Cited by: 55
Author(s): Michael B. Waak, Raymond M. Hozalski, Cynthia Hallé, Timothy M. LaPara
Software Mentions: 4
Published: over 5 years ago

10.3390/microorganisms9020438

Phylogenetic Characterization of Crimean-Congo Hemorrhagic Fever Virus Detected in African Blue Ticks Feeding on Cattle in a Ugandan Abattoir
Cited by: 10
Author(s): Eddie M. Wampande, Peter Waiswa, David J. Allen, Roger Hewson, Simon D. W. Frost, Sam Stubbs
Software Mentions: 4
Published: almost 4 years ago

10.3390/microorganisms9081585

Whole Genome Sequencing Refines Knowledge on the Population Structure of Mycobacterium bovis from a Multi-Host Tuberculosis System
Cited by: 11
Author(s): Ana C. Reis, Liliana C. M. Salvador, Suelee Robbe‐Austerman, Rogério Tenreiro, Ana Botelho, Teresa Albuquerque, Mónica V. Cunha
Software Mentions: 4
Published: over 3 years ago

10.1093/molbev/msaa323

Genome Reduction Is Associated with Bacterial Pathogenicity across Different Scales of Temporal and Ecological Divergence
Cited by: 40
Author(s): Gemma G. R. Murray, Jane Charlesworth, Eric L. Miller, Michael J. Casey, Catrin Lloyd, Marcelo Gottschalk, Alexander W. Tucker, John J. Welch, Lucy A. Weinert
Software Mentions: 4
Published: almost 4 years ago

10.1111/mec.14865

Species-complex diversification and host-plant associations in Bemisia tabaci : A plant-defence, detoxification perspective revealed by RNA-Seq analyses
Cited by: 37
Author(s): Osnat Malka, Diego Santos-García, Ester Feldmesser, Elad Sharon, Renate Krause‐Sakate, Hélène Delatte, Sharon van Brunschot, Mitulkumar V. Patel, Paul Visendi, Habibu Mugerwa, Susan Seal, John Colvin, Shai Morin
Software Mentions: 4
Published: about 6 years ago

10.1111/mec.14583

Hierarchical decision‐making balances current and future reproductive success
Cited by: 21
Author(s): Eva Ringler, Georgine Szipl, Ryan J. Harrigan, Perta Bartl-Binder, Rosanna Mangione, Max Ringler
Software Mentions: 4
Published: over 6 years ago

10.1002/1878-0261.12849

Molecular genomic features associated within vitroresponse of the NCI‐60 cancer cell line panel to natural products
Cited by: 10
Author(s): Julia Krushkal, Simarjeet Negi, Laura M. Yee, Jason R. Evans, Tanja Grkovic, Alida Palmisano, Jianwen Fang, Hari Sankaran, Lisa M. McShane, Yingdong Zhao, Barry R. O’Keefe
Software Mentions: 4
Published: almost 4 years ago

10.1186/s40462-017-0117-x

Life-history strategy, resource dispersion and phylogenetic associations shape dispersal of a fig wasp community
Cited by: 9
Author(s): Vignesh Venkateswaran, Amitabh Shrivastava, Anusha L. K. Kumble, Renée M. Borges
Software Mentions: 4
Published: almost 7 years ago

10.3390/vaccines8020228

Identifying Suspect Bat Reservoirs of Emerging Infections
Cited by: 17
Author(s): Daniel Crowley, Daniel J. Becker, Alex D. Washburne, Raina K. Plowright
Software Mentions: 4
Published: over 4 years ago

10.1186/s13567-014-0114-7

Multilocus sequence analysis of Anaplasma phagocytophilum reveals three distinct lineages with different host ranges in clinically ill French cattle
Cited by: 25
Author(s): Amélie Chastagner, Thibaud Dugat, Gwenaël Vourc’H, Hélène Verheyden, Loïc Legrand, Véronique Bachy, Luc Chabanne, Guy Joncour, Renaud Maillard, Henri-Jean Boulouis, Nadia Haddad, Xavier Bailly, Agnès Leblond
Software Mentions: 4
Published: almost 10 years ago

10.3390/v12111304

Genetic and Antigenic Evolution of European Swine Influenza A Viruses of HA-1C (Avian-Like) and HA-1B (Human-Like) Lineages in France from 2000 to 2018
Cited by: 7
Author(s): Amélie Chastagner, Séverine Hervé, Stéphane Quéguiner, Edouard Hirchaud, Pierrick Lucas, Stéphane Gorin, Véronique Béven, Nicolas Barbier, Céline Deblanc, Yannick Blanchard, Gaëlle Simon
Software Mentions: 4
Published: about 4 years ago

10.1186/s40851-018-0093-z

Trabecular architecture in the sciuromorph femoral head: allometry and functional adaptation
Cited by: 35
Author(s): Maja Mielke, Jan Wölfer, Patrick Arnold, Anneke H. van Heteren, Eli Amson, John A. Nyakatura
Software Mentions: 4
Published: over 6 years ago

10.1186/s13071-020-04538-9

Leeches as the intermediate host for strigeid trematodes: genetic diversity and taxonomy of the genera Australapatemon Sudarikov, 1959 and Cotylurus Szidat, 1928
Cited by: 6
Author(s): Ewa Pyrka, Gerard Kanarek, Grzegorz Zaleśny, Joanna Hildebrand
Software Mentions: 4
Published: almost 4 years ago

10.1186/s13071-016-1296-9

Effect of landscape features on the relationship between Ixodes ricinus ticks and their small mammal hosts
Cited by: 49
Author(s): Grégoire Perez, Suzanne Bastian, Albert Agoulon, Agnès Bouju, Axelle Durand, Frédéric Faille, Isabelle Lebert, Yann Rantier, Olivier Plantard, Alain Butet
Software Mentions: 4
Published: almost 9 years ago

10.7717/peerj.6247

Diversity, spatial distribution and activity of fungi in freshwater ecosystems
Cited by: 30
Author(s): Cécile Lepère, Isabelle Domaizon, Jean‐François Humbert, Ludwig Jardillier, Mylène Hugoni, Didier Debroas
Software Mentions: 4
Published: almost 6 years ago

10.7717/peerj.3328

Phylogenetic climatic niche conservatism and evolution of climatic suitability in Neotropical Angraecinae (Vandeae, Orchidaceae) and their closest African relatives
Cited by: 14
Author(s): Marta Kolanowska, Elżbieta Grochocka, Kamil Konowalik
Software Mentions: 4
Published: over 7 years ago

10.7717/peerj.4512

Playing by the rules? Phenotypic adaptation to temperate environments in an American marsupial
Cited by: 16
Author(s): Sergio Nigenda‐Morales, Ryan J. Harrigan, Robert K. Wayne
Software Mentions: 4
Published: over 6 years ago

10.1098/rstb.2014.0007

Phylogenetic diversity meets conservation policy: small areas are key to preserving eucalypt lineages
Cited by: 65
Author(s): Laura J. Pollock, Dan F. Rosauer, Andrew H. Thornhill, Heini Kujala, Michael D. Crisp, Joe Miller, Michael A. McCarthy
Software Mentions: 4
Published: almost 10 years ago

10.3390/plants10071452

Alternative Control of Phragmidium rubi-idaei Infecting Two Rubus Species
Cited by: 3
Author(s): Raluca-Maria Pârlici, Aurel Maxim, Ștefania Mirela Mang, Ippolito Camele, Lucia Mihălescu, Vlad Stoian
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pbio.2003583

Drivers of genetic diversity in secondary metabolic gene clusters within a fungal species
Cited by: 146
Author(s): Abigail Lind, Jennifer H. Wisecaver, Catarina Lameiras, Philipp Wiemann, Jonathan M. Palmer, Nancy P. Keller, Fernando Rodrigues, Gustavo H. Goldman, Antonis Rokas
Software Mentions: 4
Published: about 7 years ago

10.1371/journal.pbio.3001248

Identification of sequence changes in myosin II that adjust muscle contraction velocity
Cited by: 7
Author(s): Chloe A Johnson, Jake E McGreig, Sarah T. Jeanfavre, Jonathan Walklate, Carlos Vera, Marta Farré, Daniel P. Mulvihill, Anthony J. Baines, Martin S. Ridout, Leslie A. Leinwand, Mark N. Wass, Michael A. Geeves
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pcbi.1004216

Learning the Structure of Biomedical Relationships from Unstructured Text
Cited by: 37
Author(s): Bethany Percha, Russ B. Altman
Software Mentions: 4
Published: over 9 years ago

10.1371/currents.RRN1237

Molecular data and ploidal levels indicate several putative allopolyploidization events in the genus Potentilla (Rosaceae)
Cited by: 26
Author(s): Mats Töpel, Magnus Lundberg, Torsten Eriksson, Bente Eriksen
Software Mentions: 4
Published: over 13 years ago

10.1371/journal.pgen.1004530

Patterns of Admixture and Population Structure in Native Populations of Northwest North America
Cited by: 81
Author(s): Paul Verdu, Trevor J. Pemberton, Romain Laurent, Brian M. Kemp, Angélica González‐Oliver, Clara Gorodezky, Cris E. Hughes, Milena R. Shattuck, Barbara Petzelt, Joycelynn Mitchell, Harold W. Harry, Theresa William, Rosita Worl, Jerome S. Cybulski, Noah A. Rosenberg, Ripan S. Malhi
Software Mentions: 4
Published: over 10 years ago

10.1371/journal.pgen.1004410

Speciation and Introgression between Mimulus nasutus and Mimulus guttatus
Cited by: 227
Author(s): Yaniv Brandvain, Amanda M. Kenney, Lex E. Flagel, Graham Coop, Andrea L. Sweigart
Software Mentions: 4
Published: over 10 years ago

10.1371/journal.pntd.0008945

Multi-locus genotyping reveals established endemicity of a geographically distinct Plasmodium vivax population in Mauritania, West Africa
Cited by: 7
Author(s): Hampaté Bâ, Sarah Auburn, Christopher G Jacob, Sónia Gonçalves, Craig W. Duffy, Lindsay B. Stewart, Ric N. Price, Yacine Boubou Deh, M. Diallo, Abderahmane Tandia, Dominic Kwiatkowski, David J. Conway
Software Mentions: 4
Published: almost 4 years ago

10.1371/journal.pone.0088998

Single-Nucleotide Polymorphism Markers from De-Novo Assembly of the Pomegranate Transcriptome Reveal Germplasm Genetic Diversity
Cited by: 58
Author(s): Ron Ophir, Amir Sherman, Mor Rubinstein, Ravit Eshed, Michal Sharabi Schwager, Rotem Harel-Beja, Irit Bar-Ya’akov, Doron Holland
Software Mentions: 4
Published: almost 11 years ago

10.1371/journal.pone.0092148

Phylogeography of the Tropical Planktonic Foraminifera Lineage Globigerinella Reveals Isolation Inconsistent with Passive Dispersal by Ocean Currents
Cited by: 40
Author(s): Agnes Weiner, Manuel F. G. Weinkauf, Atsushi Kurasawa, Kate Darling, Michal Kučera, Guido W. Grimm
Software Mentions: 4
Published: over 10 years ago

10.1371/journal.pone.0150002

CG Methylation Covaries with Differential Gene Expression between Leaf and Floral Bud Tissues of Brachypodium distachyon
Cited by: 23
Author(s): Kyria Roessler, Shohei Takuno, Brandon S. Gaut
Software Mentions: 4
Published: over 8 years ago

10.1371/journal.pone.0027597

Do Patterns of Bacterial Diversity along Salinity Gradients Differ from Those Observed for Macroorganisms?
Cited by: 100
Author(s): Jianjun Wang, Dongmei Yang, Yong Zhang, Jian Shen, Christopher J. van der Gast, Martin W. Hahn, Qinglong L. Wu
Software Mentions: 4
Published: about 13 years ago

10.1371/journal.pone.0109642

Amphibian Beta Diversity in the Brazilian Atlantic Forest: Contrasting the Roles of Historical Events and Contemporary Conditions at Different Spatial Scales
Cited by: 36
Author(s): Fernando Rodrigues da Silva, Mário Almeida‐Neto, Mariana Victorino Nicolosi Arena
Software Mentions: 4
Published: about 10 years ago

10.1371/journal.pone.0158496

The Evolution of Diapsid Reproductive Strategy with Inferences about Extinct Taxa
Cited by: 16
Author(s): Jason R. Moore, David J. Varricchio
Software Mentions: 4
Published: over 8 years ago

10.1371/journal.pone.0097620

DNA Barcoding and the Associated PhylAphidB@se Website for the Identification of European Aphids (Insecta: Hemiptera: Aphididae)
Cited by: 41
Author(s): Armelle Coeur d’Acier, Astrid Cruaud, Emmanuelle Artige, Guénaëlle Genson, Anne Laure Clamens, Éric Pierre, Sylvie Hudaverdian, Jean‐Christophe Simon, Emmanuelle Jousselin, Jean‐Yves Rasplus
Software Mentions: 4
Published: over 10 years ago

10.1371/journal.pone.0153570

If Dung Beetles (Scarabaeidae: Scarabaeinae) Arose in Association with Dinosaurs, Did They Also Suffer a Mass Co-Extinction at the K-Pg Boundary?
Cited by: 66
Author(s): Nicole L. Gunter, Tom A. Weir, Adam Slipinksi, Ladislav Bocäk, Stephen L. Cameron
Software Mentions: 4
Published: over 8 years ago

10.1371/journal.pone.0198356

A mega-cryptic species complex hidden among one of the most common annelids in the North East Atlantic
Cited by: 52
Author(s): Arne Nygren, Julio Parapar, Joan Pons, Karin Meißner, Torkild Bakken, Jon Anders Kongsrud, Eivind Oug, Daria Gaeva, Andrey Sikorski, Robert André Johansen, Pat Hutchings, Nicolas Lavesque, María Capa
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0255952

Vegan vs. omnivore diets paradox: A whole-metagenomic approach for defining metabolic networks during the race in ultra-marathoners- a before and after study design
Cited by: 1
Author(s): Aslı Devrim-Lanpir, Havvanur Yoldaş İlktaç, Katharina Wirnitzer, Lee Hill, Thomas Rosemann, Beat Knechtle
Software Mentions: 4
Published: about 3 years ago

10.1371/journal.pone.0249176

The role of a mechanistic host in maintaining arctic rabies variant distributions: Assessment of functional genetic diversity in Alaskan red fox (Vulpes vulpes)
Cited by: 0
Author(s): Tristan M. Baecklund, Jaycee Morrison, Michael E. Donaldson, Karsten Hueffer, Christopher J. Kyle
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pone.0023624

The GC-Rich Mitochondrial and Plastid Genomes of the Green Alga Coccomyxa Give Insight into the Evolution of Organelle DNA Nucleotide Landscape
Cited by: 49
Author(s): David Roy Smith, Fabien Burki, Takashi Yamada, Jane Grimwood, Igor V. Grigoriev, James L. Van Etten, Patrick J. Keeling
Software Mentions: 4
Published: about 13 years ago

10.1371/journal.pone.0045769

Longevity in Bovids Is Promoted by Sociality, But Reduced by Sexual Selection
Cited by: 15
Author(s): Jakob Bro‐Jørgensen
Software Mentions: 4
Published: about 12 years ago

10.1371/journal.pone.0010509

Sibling Competition and Conspicuousness of Nestling Gapes in Altricial Birds: A Comparative Study
Cited by: 20
Author(s): Juan José Soler, Jesús M. Avilés
Software Mentions: 4
Published: over 14 years ago

10.1371/journal.pone.0166746

Deciphering Multiplicity of HIV-1C Infection: Transmission of Closely Related Multiple Viral Lineages
Cited by: 12
Author(s): Vlad Novitsky, Sikhulile Moyo, Rui Wang, Simani Gaseitsiwe, Myron Essex
Software Mentions: 4
Published: almost 8 years ago

10.1371/journal.pone.0233627

Development syndromes in New World temperate and tropical songbirds
Cited by: 6
Author(s): Suzanne H. Austin, W. Douglas Robinson, Tara Rodden Robinson, Vincenzo A. Ellis, Robert E. Ricklefs
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0242940

Development of a minimal KASP marker panel for distinguishing genotypes in apple collections
Cited by: 7
Author(s): Mark Winfield, Amanda Burridge, Matthew Ordidge, Helen Harper, Paul Wilkinson, Daniel Thorogood, Liz Copas, Keith J. Edwards, Gary Barker
Software Mentions: 4
Published: almost 4 years ago

10.1371/journal.pone.0050358

Past Climate Change and Plant Evolution in Western North America: A Case Study in Rosaceae
Cited by: 47
Author(s): Mats Töpel, Alexandre Antonelli, Chris Yesson, Bente Eriksen
Software Mentions: 4
Published: almost 12 years ago

10.1371/journal.pone.0175037

Patterns of cetacean vaginal folds yield insights into functionality
Cited by: 21
Author(s): Dara N. Orbach, Christopher D. Marshall, Sarah L. Mesnick, Bernd Würsig
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.pone.0209025

Change in fish functional diversity and assembly rules in the course of tidal marsh restoration
Cited by: 11
Author(s): Alain Lechêne, Jérémy Lobry, Philippe Boët, Pascal Laffaille
Software Mentions: 4
Published: almost 6 years ago

10.1038/s42003-019-0689-7

Extensive host-switching of avian feather lice following the Cretaceous-Paleogene mass extinction event
Cited by: 18
Author(s): Robert S. de Moya, Julie M. Allen, Andrew D. Sweet, Kimberly K. O. Walden, Ricardo L. Palma, Vincent Smith, Stephen L. Cameron, Michel P. Valim, Terry D. Galloway, Jason D. Weckstein, Kevin P. Johnson
Software Mentions: 4
Published: almost 5 years ago

10.1093/conphys/coaa094

Does Cathaya argyrophylla, an ancient and threatened Pinaceae species endemic to China, show eco-physiological outliers to its Pinaceae relatives?
Cited by: 3
Author(s): Dayong Fan, Xiangping Wang, Wangfeng Zhang, Zhang Xiangying, Shouren Zhang, Zongqiang Xie
Software Mentions: 4
Published: almost 5 years ago

10.1016/j.dib.2016.06.005

Phylodynamic analysis of porcine circovirus type 2: Methodological approach and datasets
Cited by: 5
Author(s): Giovanni Franzo, Martı́ Cortey, Joaquím Segalés, Joseph Hughes, Michele Drigo
Software Mentions: 4
Published: about 8 years ago

10.1002/ece3.5032

Dissimilarity of individual microsatellite profiles under different mutation models: Empirical approach
Cited by: 12
Author(s): Evsey Kosman, Jukka Jokela
Software Mentions: 4
Published: over 5 years ago

10.1002/ece3.3350

Polyphagy and diversification in tussock moths: Support for the oscillation hypothesis from extreme generalists
Cited by: 20
Author(s): Houshuai Wang, J. D. Holloway, Niklas Janz, Mariana P. Braga, Niklas Wahlberg, Min Wang, Sören Nylin
Software Mentions: 4
Published: about 7 years ago

10.1002/ece3.1406

On the analysis of phylogenetically paired designs
Cited by: 13
Author(s): Jennifer L. Funk, Cyril Rakovski, J. Michael Macpherson
Software Mentions: 4
Published: almost 10 years ago

10.1002/ece3.5021

The conservation value of cacao agroforestry for bird functional diversity in tropical agricultural landscapes
Cited by: 10
Author(s): Joedison Rocha, Rudi Ricardo Laps, Caio Graco Machado, Sofía Campiolo
Software Mentions: 4
Published: over 5 years ago

10.1002/ece3.6634

The external ear morphology and presence of tragi in Australian marsupials
Cited by: 1
Author(s): Hayley J. Stannard, Kathryn Dennington, Julie M. Old
Software Mentions: 4
Published: about 4 years ago

10.1002/ece3.7720

Interspecific variation in mortality and growth and changes in their relationship with size class in an old‐growth temperate forest
Cited by: 5
Author(s): Takashi Masaki, Ryo Kitagawa, Tohru Nakashizuka, Mitsue Shibata, Hiroshi Tanaka
Software Mentions: 4
Published: over 3 years ago

10.1002/ece3.6351

Dark diversity reveals importance of biotic resources and competition for plant diversity across habitats
Cited by: 10
Author(s): Camilla Fløjgaard, Jose W. Valdez, Lars Dalby, Jesper Erenskjold Moeslund, Kevin Kuhlmann Clausen, Rasmus Ejrnæs, Meelis Pärtel, Ane Kirstine Brunbjerg
Software Mentions: 4
Published: over 4 years ago

10.1002/ece3.1949

Evolution of tail fork depth in genus <scp>H</scp> irundo 
Cited by: 22
Author(s): Masaru Hasegawa, Emi Arai, Nobuyuki Kutsukake
Software Mentions: 4
Published: almost 9 years ago

10.1002/ece3.1194

Species‐specific differences in relative eye size are related to patterns of edge avoidance in an Amazonian rainforest bird community
Cited by: 16
Author(s): Cristina Martínez‐Ortega, Eduardo S. A. Santos, Diego Gil
Software Mentions: 4
Published: about 10 years ago

10.1002/ece3.3569

Energy determines broad pattern of plant distribution in Western Himalaya
Cited by: 29
Author(s): Rutuparna Panda, Mukunda Dev Behera, P. S. Roy, Chandrashekhar Biradar
Software Mentions: 4
Published: about 7 years ago

10.1002/ece3.5937

Telemetry and genetics reveal asymmetric dispersal of a lake‐feeding salmonid between inflow and outflow spawning streams at a microgeographic scale
Cited by: 9
Author(s): Ross Finlay, Russell Poole, Jamie Coughlan, Karl P. Phillips, Paulo A. Prodöhl, D. Cotter, Philip McGinnity, Thomas E. Reed
Software Mentions: 4
Published: almost 5 years ago

10.1002/ece3.5065

The role of glacial‐interglacial climate change in shaping the genetic structure of eastern subterranean termites in the southern Appalachian Mountains, USA
Cited by: 9
Author(s): Chaz Hyseni, Ryan C. Garrick
Software Mentions: 4
Published: over 5 years ago

10.1002/ece3.3785

Host species, and not environment, predicts variation in blood parasite prevalence, distribution, and diversity along a humidity gradient in northern South America
Cited by: 39
Author(s): Paulo C. Pulgarín‐R, Juan Pablo Gómez, Scott K. Robinson, Robert E. Ricklefs, Carlos Daniel Cadena
Software Mentions: 4
Published: over 6 years ago

10.1038/ejhg.2014.1

Using ancestry-informative markers to identify fine structure across 15 populations of European origin
Cited by: 29
Author(s): Laura Huckins, Vesna Boraska, Christopher S. Franklin, James A B Floyd, Lorraine Southam, Gcan, Wtccc, Patrick F. Sullivan, Cynthia M. Bulik, David A. Collier, Chris Tyler‐Smith, Eleftheria Zeggini, Ioanna Tachmazidou
Software Mentions: 4
Published: almost 11 years ago

10.1111/eva.12555

Focusing the diversity ofGardnerella vaginalisthrough the lens of ecotypes
Cited by: 33
Author(s): Omar E. Cornejo, Roxana J. Hickey, Haruo Suzuki, Larry J. Forney
Software Mentions: 4
Published: about 7 years ago

10.1111/eva.12338

Whole genome sequencing shows sleeping sickness relapse is due to parasite regrowth and not reinfection
Cited by: 11
Author(s): Joshua B. Richardson, Benjamin R. Evans, Pati Patient Pyana, Nick Van Reet, Mark Sistrom, P. Büscher, Serap Aksoy, Adalgisa Caccone
Software Mentions: 4
Published: almost 9 years ago

10.1007/s00792-018-1071-2

Cuniculiplasmataceae, their ecogenomic and metabolic patterns, and interactions with ‘ARMAN’
Cited by: 10
Author(s): Olga V. Golyshina, Rafael Bargiela, Peter N. Golyshin
Software Mentions: 4
Published: almost 6 years ago

10.3389/fgene.2018.00476

The Paralogous Genes PDR18 and SNQ2, Encoding Multidrug Resistance ABC Transporters, Derive From a Recent Duplication Event, PDR18 Being Specific to the Saccharomyces Genus
Cited by: 12
Author(s): Cláudia P. Godinho, Paulo Jorge Dias, Elise Ponçot, Isabel Sá‐Correia
Software Mentions: 4
Published: about 6 years ago

10.3389/fmed.2021.656827

Molecular Epidemiology of Salmonellosis in Florida, USA, 2017–2018
Cited by: 6
Author(s): Nitya Singh, Xiaolong Li, Elizabeth Beshearse, Jason Blanton, Jamie DeMent, Arie H. Havelaar
Software Mentions: 4
Published: over 3 years ago

10.3389/fmicb.2019.00167

The Environment and Cyanophage Diversity: Insights From Environmental Sequencing of DNA Polymerase
Cited by: 14
Author(s): Jan F. Finke, Curtis A. Suttle
Software Mentions: 4
Published: almost 6 years ago

10.3389/fmicb.2020.01092

Detecting Introgression Between Members of the Fusarium fujikuroi and F. oxysporum Species Complexes by Comparative Mitogenomics
Cited by: 8
Author(s): Balázs Brankovics, A.D. van Diepeningen, G. Sybren de Hoog, Theo A. J. van der Lee, C. Waalwijk
Software Mentions: 4
Published: over 4 years ago

10.3389/fmicb.2021.678100

Assessing Biosynthetic Gene Cluster Diversity of Specialized Metabolites in the Conserved Gut Symbionts of Herbivorous Turtle Ants
Cited by: 8
Author(s): Anaïs Chanson, Corrie S. Moreau, Christophe Duplais
Software Mentions: 4
Published: over 3 years ago

10.3389/fmicb.2018.02290

Organic Matter Regulates Ammonia-Oxidizing Bacterial and Archaeal Communities in the Surface Sediments of Ctenopharyngodon idellus Aquaculture Ponds
Cited by: 27
Author(s): Lili Dai, Chengqing Liu, Liqin Yu, Song Cheng, Peng Liang, Xiaoli Li, Ling Tao, Li Gu
Software Mentions: 4
Published: about 6 years ago

10.3389/fpls.2020.01040

Comparison Between Core Set Selection Methods Using Different Illumina Marker Platforms: A Case Study of Assessment of Diversity in Wheat
Cited by: 25
Author(s): Behnaz Soleimani, Heike Lehnert, Jens Keilwagen, Joerg Plieske, Frank Ordon, Sara Naseri Rad, Martin W. Ganal, Sebastian Beier, Dragan Perović
Software Mentions: 4
Published: over 4 years ago

10.3389/fpls.2021.663721

Resisting Aridification: Adaptation of Sap Conduction Performance in Moroccan Wild Olive Subspecies Distributed Over an Aridity Gradient
Cited by: 8
Author(s): Jalal Kassout, Mohammed Ater, Sarah Ivorra, Hicham Barbara, Bertrand Limier, Jérôme Ros, Vincent Girard, Laure Paradis, Jean‐Frédéric Terral
Software Mentions: 4
Published: over 3 years ago

10.3389/fpls.2016.00524

Comparative Analysis of Membrane Lipids in Psychrophilic and Mesophilic Freshwater Dinoflagellates
Cited by: 20
Author(s): Andrea Anesi, Ulrike Obertegger, Gert H. Hansen, Assaf Sukenik, Giovanna Flaim, Graziano Guella
Software Mentions: 4
Published: over 8 years ago

10.3389/fpls.2019.00009

Genomic Analysis Confirms Population Structure and Identifies Inter-Lineage Hybrids in Aegilops tauschii
Cited by: 37
Author(s): Narinder Singh, Shuangye Wu, Vijay K. Tiwari, Sunish K. Sehgal, John Raupp, Duane Wilson, Mehraj Abbasov, Bikram S. Gill, Jesse Poland
Software Mentions: 4
Published: almost 6 years ago

10.3389/fpls.2021.712064

Plastome Evolution in the Hyperdiverse Genus Euphorbia (Euphorbiaceae) Using Phylogenomic and Comparative Analyses: Large-Scale Expansion and Contraction of the Inverted Repeat Region
Cited by: 13
Author(s): Neng Wei, Óscar Alejandro Pérez-Escobar, Paul M. Musili, Wei-Chang Huang, Jun‐Bo Yang, Aijun Hu, Guang‐Wan Hu, Olwen M. Grace, Qingfeng Wang
Software Mentions: 4
Published: over 3 years ago

10.3389/fpls.2016.01145

Evolution of Epiphytism and Fruit Traits Act Unevenly on the Diversification of the Species-Rich Genus Peperomia (Piperaceae)
Cited by: 9
Author(s): Lena Frenzke, Paul Goetghebeur, Christoph Neinhuis, Marie‐Stéphanie Samain, Stefan Wanke
Software Mentions: 4
Published: over 8 years ago

10.3389/fvets.2021.679368

Effects of Bacillus amyloliquefaciens Instead of Antibiotics on Growth Performance, Intestinal Health, and Intestinal Microbiota of Broilers
Cited by: 13
Author(s): Baikui Wang, Yuguang Zhou, Li Tang, Zihan Zeng, Li Gong, Yanping Wu, Weifen Li
Software Mentions: 4
Published: over 3 years ago

Projects: cran: ape

Papers Mentioning ape 918