cran: ape | Projects | Ecosyste.ms: Papers

10.1002/evl3.156

Sex differences in age-to-maturation relate to sexual selection and adult sex ratios in birds
Cited by: 16
Author(s): Sergio Ancona, András Liker, Mariá Cristina Carmona-Isunza, Tamás Székely
Software Mentions: 6
Published: almost 5 years ago

10.1093/gbe/evaa143

The Genome of the Softshell Clam Mya arenaria and the Evolution of Apoptosis
Cited by: 5
Author(s): David C. Plachetzki, M. Sabrina Pankey, Matthew D. MacManes, Michael P. Lesser, Charles W. Walker
Software Mentions: 6
Published: over 4 years ago

10.1002/ece3.7215

Beta diversity of aquatic macroinvertebrate assemblages associated with leaf patches in neotropical montane streams
Cited by: 10
Author(s): Marcos Callisto, Marden S. Linares, Walace P. Kiffer, Robert M. Hughes, Marcelo S. Moretti, Diego Rodrigues Macedo, Ricardo Solar
Software Mentions: 6
Published: almost 4 years ago

10.3390/jof7030226

The Destructive Tree Pathogen Phytophthora ramorum Originates from the Laurosilva Forests of East Asia
Cited by: 34
Author(s): Thomas S. Jung, Marília Horta Jung, Joan Webber, Koji Kageyama, Ayaka Hieno, Hayato Masuya, Satoshi Uematsu, A. Pérez‐Sierra, Anna Harris, Jack Forster, Harvey Rees, Bruno Scanu, Sneha Patra, Tomáš Kudláček, Jan Janoušek, Tamara Corcobado, Ivan Milenković, Zoltán Á. Nagy, Ildikó Csorba, J. Bakonyi, C. M. Brasier
Software Mentions: 6
Published: over 3 years ago

10.1002/ece3.2739

Are long‐term widespread avian body size changes related to food availability? A test using contemporaneous changes in carotenoid‐based color
Cited by: 5
Author(s): Roellen Little, Janet L. Gardner, Tatsuya Amano, Kaspar Delhey, Anne Peters
Software Mentions: 6
Published: over 7 years ago

10.1093/gbe/evaa088

Ampliconic Genes on the Great Ape Y Chromosomes: Rapid Evolution of Copy Number but Conservation of Expression Levels
Cited by: 9
Author(s): Rahulsimham Vegesna, Marta Tomaszkiewicz, Oliver A. Ryder, Rebeca Campos-Sánchez, Paul Medvedev, Michael DeGiorgio, Kateryna D. Makova
Software Mentions: 6
Published: over 4 years ago

10.1590/1678-4685-GMB-2017-0074

Skull shape and size variation within and between mendocinus and torquatus groups in the genus Ctenomys (Rodentia: Ctenomyidae) in chromosomal polymorphism context
Cited by: 11
Author(s): Rodrigo Fornel, Pedro Cordeiro‐Estrela, Thales Renato Ochotorena de Freitas
Software Mentions: 6
Published: almost 7 years ago

10.1186/s13059-018-1522-1

Genes reveal traces of common recent demographic history for most of the Uralic-speaking populations
Cited by: 66
Author(s): Kristiina Tambets, Bayazit Yunusbayev, Georgi Hudjashov, Anne-Mai Ilumäe, Siiri Rootsi, Terhi Honkola, Outi Vesakoski, Quentin D. Atkinson, Pontus Skoglund, Alena Kushniarevich, Sergey Litvinov, Maere Reidla, Ene Metspalu, Lehti Saag, Timo Rantanen, Monika Karmin, Jüri Parik, Sergey I. Zhadanov, Marina Gubina, Л. Д. Дамба, Marina Bermisheva, Tuuli Reisberg, Khadizhat Dibirova, Irina Evseeva, Mari Nelis, Jānis Kloviņš, Andres Metspalu, Tõnu Esko, Oleg Balanovsky, Elena Balanovska, Elza Khusnutdinova, Ludmila P. Osipova, М. И. Воевода, Richard Villems, Toomas Kivisild, Mait Metspalu
Software Mentions: 6
Published: about 6 years ago

10.1186/1471-2164-15-1075

Genomic characterisation of an endometrial pathogenic Escherichia coli strain reveals the acquisition of genetic elements associated with extra-intestinal pathogenicity
Cited by: 14
Author(s): Robert Goldstone, Roman Popat, Hans‐Joachim Schuberth, Olivier Sandra, I. Martin Sheldon, David George Emslie Smith
Software Mentions: 6
Published: almost 10 years ago

10.1186/s13059-019-1908-8

Host-associated microbiomes are predicted by immune system complexity and climate
Cited by: 45
Author(s): Douglas C. Woodhams, Molly C. Bletz, C. Guilherme Becker, Hayden A. Bender, Daniel Buitrago-Rosas, Hannah Diebboll, Roger Huynh, Patrick J. Kearns, Jordan G. Kueneman, Emmi Kurosawa, Brandon LaBumbard, Casandra Lyons, Kerry McNally, Klaus Schliep, Nachiket Shankar, Amanda G. Tokash-Peters, Miguel Vences, Ross Whetstone
Software Mentions: 6
Published: almost 5 years ago

10.1186/s12983-019-0331-z

Landscape homogenization due to agricultural intensification disrupts the relationship between reproductive success and main prey abundance in an avian predator
Cited by: 26
Author(s): Petra Sumasgutner, Julien Terraube, Aurélie Coulon, Alexandre Villers, Nayden Chakarov, Luise Kruckenhauser, Erkki Korpimäki
Software Mentions: 6
Published: over 5 years ago

10.1186/s12983-021-00399-9

Habitat influences skeletal morphology and density in the snailfishes (family Liparidae)
Cited by: 9
Author(s): Mackenzie E. Gerringer, Abbey Dias, A. A. von Hagel, James W. Orr, Adam P. Summers, Stacy C. Farina
Software Mentions: 6
Published: over 3 years ago

10.3389/fpls.2017.01196

Intraspecific Trait Variation and Coordination: Root and Leaf Economics Spectra in Coffee across Environmental Gradients
Cited by: 55
Author(s): Marney E. Isaac, Adam R. Martin, Elías de Melo Virginio Filho, Bruno Rapidel, Olivier Roupsard, Karel Van den Meersche
Software Mentions: 6
Published: over 7 years ago

10.1038/s41396-020-00736-6

The saccharibacterium TM7x elicits differential responses across its host range
Cited by: 26
Author(s): Daniel R. Utter, Xuesong He, Colleen M. Cavanaugh, Jeffrey S. McLean, Batbileg Bor
Software Mentions: 6
Published: about 4 years ago

10.1371/journal.pone.0218775

Birds vs bricks: Patterns of species diversity in response to urbanization in a Neotropical Andean city
Cited by: 24
Author(s): Juan D. Carvajal-Castro, Ana María Ospina-L, Yemay Toro-López, Anny Pulido-G, Laura Ximena Cabrera-Casas, Sebastián Guerrero-Peláez, Víctor Hugo García-Merchán, Fernando Vargas‐Salinas
Software Mentions: 6
Published: over 5 years ago

10.1186/s12862-020-01645-0

What makes a fang? Phylogenetic and ecological controls on tooth evolution in rear-fanged snakes
Cited by: 20
Author(s): Erin P. Westeen, Andrew M. Durso, Michael C. Gründler, Daniel L. Rabosky, Alison R. Davis Rabosky
Software Mentions: 6
Published: over 4 years ago

10.1080/19490976.2021.1874815

Spatial analysis of gut microbiome reveals a distinct ecological niche associated with the mucus layer
Cited by: 33
Author(s): Kellyanne Duncan, Kelly Carey-Ewend, Shipra Vaishnava
Software Mentions: 6
Published: almost 4 years ago

10.1371/journal.pone.0220120

The traits that predict the magnitude and spatial scale of forest bird responses to urbanization intensity
Cited by: 9
Author(s): Grant D. Paton, Alexandra V. Shoffner, Andrew Wilson, Sara A. Gagné
Software Mentions: 6
Published: over 5 years ago

10.3389/fpls.2021.681113

Root Functional Trait and Soil Microbial Coordination: Implications for Soil Respiration in Riparian Agroecosystems
Cited by: 11
Author(s): Kira A. Borden, Tolulope Mafa-Attoye, Kari E. Dunfield, Naresh V. Thevathasan, Andrew Gordon, Marney E. Isaac
Software Mentions: 6
Published: over 3 years ago

10.1371/journal.pone.0095040

Evolutionary Dynamics in the Southwest Indian Ocean Marine Biodiversity Hotspot: A Perspective from the Rocky Shore Gastropod Genus Nerita
Cited by: 15
Author(s): Bautisse Postaire, J. Henrich Bruggemann, Hélène Magalon, Baptiste Faure
Software Mentions: 6
Published: over 10 years ago

10.3390/microorganisms9071540

Genome Characterization of Nocturne116, Novel Lactococcus lactis-Infecting Phage Isolated from Moth
Cited by: 4
Author(s): Ņikita Zrelovs, Andris Dišlers, Andris Kazāks
Software Mentions: 6
Published: over 3 years ago

10.1186/s12862-018-1244-8

Microhabitat change drives diversification in pholcid spiders
Cited by: 34
Author(s): Jonas Eberle, Dimitar Dimitrov, Alejandro Valdez‐Mondragón, Bernhard A. Huber
Software Mentions: 6
Published: about 6 years ago

10.3389/fpls.2021.714393

Transcriptome Profiling Reveals Differential Gene Expression of Secreted Proteases and Highly Specific Gene Repertoires Involved in Lactarius–Pinus Symbioses
Cited by: 7
Author(s): Nianwu Tang, Annie Lebreton, Wenjun Xu, Yu-Cheng Dai, Fuqiang Yu, Francis Martin
Software Mentions: 6
Published: over 3 years ago

10.1371/journal.pone.0255140

Comparative Y-chromosome analysis among Cypriots in the context of historical events and migrations
Cited by: 1
Author(s): Irene Moutsouri, Anna Keravnou, Panayiotis Manoli, Stefania Bertoncini, Kyriaki Michailidou, Vasilis Christofi, Stavroulla Xenophontos, Marios A. Cariolou, Evy Bashiardes
Software Mentions: 6
Published: about 3 years ago

10.1002/ece3.2150

Plant regeneration from seeds responds to phylogenetic relatedness and local adaptation in Mediterranean Romulea (Iridaceae) species
Cited by: 31
Author(s): Angelino Carta, Sarah Hanson, Jonas V. Müller
Software Mentions: 6
Published: over 8 years ago

10.1371/journal.pone.0240565

Exploring aflatoxin contamination and household-level exposure risk in diverse Indian food systems
Cited by: 8
Author(s): Anthony J. Wenndt, H. Sudini, Prabhu Pingali, Rebecca Nelson
Software Mentions: 6
Published: about 4 years ago

10.1128/mSphere.00393-21

Multidimensional Clinical Surveillance of Pseudomonas aeruginosa Reveals Complex Relationships between Isolate Source, Morphology, and Antimicrobial Resistance
Cited by: 3
Author(s): Laura J. Dunphy, Glynis L. Kolling, Matthew L. Jenior, Joanne Carroll, April E Attai, Farzad Farnoud, Amy J Mathers, Molly A. Hughes, Jason A. Papin
Software Mentions: 6
Published: about 3 years ago

10.1038/s41598-021-86287-y

Population genomic analyses of schistosome parasites highlight critical challenges facing endgame elimination efforts
Cited by: 9
Author(s): Jonathan A. Shortt, Laura E. Timm, Nicole R. Hales, Zachary L. Nikolakis, Drew R. Schield, Blair W. Perry, Yang Liu, Bo Zhong, Elizabeth J. Carlton, David D. Pollock
Software Mentions: 6
Published: over 3 years ago

10.3389/fpls.2021.656783

Evolution of Bird and Insect Flower Traits in Fritillaria L. (Liliaceae)
Cited by: 5
Author(s): Katarzyna Roguz, Laurence Hill, Agata Roguz, Marcin Zych
Software Mentions: 6
Published: over 3 years ago

10.1038/s41598-021-87296-7

Genomic prediction for growth using a low-density SNP panel in dromedary camels
Cited by: 9
Author(s): Morteza Bitaraf Sani, Javad Zare Harofte, Mohammad Hossein Banabazi, Saeid Esmaeilkhanian, Ali Naderi, Nader Salim, Abbas Teimoori, Ahmad Bitaraf, Mohammad Zadehrahmani, Pamela Anna Burger, V. Landi, Mohammad Silawi, Afsaneh Taghipour Sheshdeh, Mohammad Ali Faghihi
Software Mentions: 6
Published: over 3 years ago

10.1371/journal.pone.0200390

Molecular marker sequences of cattle Cooperia species identify Cooperia spatulata as a morphotype of Cooperia punctata
Cited by: 18
Author(s): Sabrina Ramünke, Fernando de Almeida Borges, Elke von Son-de Fernex, Georg von Samson‐Himmelstjerna, Jürgen Krücken
Software Mentions: 6
Published: over 6 years ago

10.3390/ani11092597

Effect of a Low-Methane Diet on Performance and Microbiome in Lactating Dairy Cows Accounting for Individual Pre-Trial Methane Emissions
Cited by: 3
Author(s): Juana Catarina Cariri Chagas, Mohammad Ramin, Ruth Gómez Expósito, Hauke Smidt, S.J. Krizsan
Software Mentions: 6
Published: about 3 years ago

10.3389/fpls.2021.683658

Responses of Low-Cost Input Combinations on the Microbial Structure of the Maize Rhizosphere for Greenhouse Gas Mitigation and Plant Biomass Production
Cited by: 3
Author(s): Caio Augusto Yoshiura, Andressa Monteiro Venturini, Lucas Palma Perez Braga, Aline Giovana da França, Maria do Carmo Catanho Pereira de Lyra, Siu Mui Tsai, Jorge L. Mazza Rodrigues
Software Mentions: 6
Published: over 3 years ago

10.1038/s41598-021-89185-5

Cage and maternal effects on the bacterial communities of the murine gut
Cited by: 16
Author(s): Gurdeep Singh, Andy Brass, Sheena M. Cruickshank, Christopher G. Knight
Software Mentions: 6
Published: over 3 years ago

10.1371/journal.pntd.0006566

Long-read whole genome sequencing and comparative analysis of six strains of the human pathogen Orientia tsutsugamushi
Cited by: 32
Author(s): Elizabeth M. Batty, Suwittra Chaemchuen, Stuart D. Blacksell, Allen L. Richards, Daniel Paris, Rory Bowden, Caroline Chan, Ramkumar Lachumanan, Nicholas P. J. Day, Peter Donnelly, Swaine L. Chen, Jeanne Salje
Software Mentions: 6
Published: over 6 years ago

10.1186/s12862-018-1300-4

A phylogenomic resolution of the sea urchin tree of life
Cited by: 37
Author(s): Nicolás Mongiardino Koch, Simon E. Coppard, Harilaos A. Lessios, Derek E. G. Briggs, Rich Mooi, Greg W. Rouse
Software Mentions: 6
Published: almost 6 years ago

10.1002/ece3.6750

Elevation patterns and critical environmental drivers of the taxonomic, functional, and phylogenetic diversity of small mammals in a karst mountain area
Cited by: 9
Author(s): Jian Sun, Zhixin Wen, Anderson Feijó, Jilong Cheng, Yanqun Wang, Song Li, Deyan Ge, Lin Xia, Qisen Yang
Software Mentions: 6
Published: about 4 years ago

10.1186/s40168-016-0174-1

Host species identity, site and time drive temperate tree phyllosphere bacterial community structure
Cited by: 163
Author(s): Isabelle Laforest‐Lapointe, Christian Messier, Steven W. Kembel
Software Mentions: 6
Published: over 8 years ago

10.1038/s41598-018-29277-x

Associations Between Nutrition, Gut Microbiome, and Health in A Novel Nonhuman Primate Model
Cited by: 50
Author(s): Jonathan B. Clayton, Gabriel A. Al‐Ghalith, Ha Thang Long, Bui Van Tuan, Francis Cabana, Hu Huang, Pajau Vangay, Tonya Ward, Vo Van Minh, Nguyen Ai Tam, Nguyen Tat Dat, Dominic A. Travis, Michael P. Murtaugh, Herbert H. Covert, Kenneth E. Glander, Tilo Nadler, Barbara Toddes, John Chih Mun Sha, Randy Singer, Dan Knights, Timothy J. Johnson
Software Mentions: 6
Published: over 6 years ago

10.1371/journal.pntd.0008962

Population genomics of Plasmodium vivax in Panama to assess the risk of case importation on malaria elimination
Cited by: 14
Author(s): Lucas E. Buyon, Ana María Santamaría, Angela M. Early, Mario Quijada, Itza Barahona, José Lasso, Mario Ávila, Sarah K. Volkman, Matthias Marti, Daniel E. Neafsey, Nicanor Obaldía
Software Mentions: 6
Published: almost 4 years ago

10.1038/s41598-019-44370-5

Rensch’s rule in avian lice: contradictory allometric trends for sexual size dimorphism
Cited by: 6
Author(s): Imre Sándor Piross, Andrea Harnos, Lajos Rózsa
Software Mentions: 6
Published: over 5 years ago

10.3389/fmicb.2015.01013

Evolutionary history influences the salinity preference of bacterial taxa in wetland soils
Cited by: 65
Author(s): Ember M. Morrissey, Rima B. Franklin
Software Mentions: 6
Published: about 9 years ago

10.1186/s12862-019-1548-3

Phylogenetic signals in pest abundance and distribution range of spider mites
Cited by: 1
Author(s): Peng‐Yu Jin, Jing‐Tao Sun, Ary A. Hoffmann, Yanfei Guo, Jin‐Cheng Zhou, Yu‐Xi Zhu, Lei Chen, Xiao‐Yue Hong
Software Mentions: 6
Published: almost 5 years ago

10.1371/journal.pone.0149891

Identification and Characterization of msf, a Novel Virulence Factor in Haemophilus influenzae
Cited by: 15
Author(s): Jennifer M. Kress-Bennett, N. Luisa Hiller, Rory Eutsey, Evan Powell, Mark Longwell, Todd A. Hillman, Tenisha Blackwell, Barbara Byers, Joshua Chang Mell, J. Christopher Post, Fang Hu, Garth D. Ehrlich, Benjamin Janto
Software Mentions: 6
Published: over 8 years ago

10.1371/journal.pone.0087553

Body Size Reductions in Nonmammalian Eutheriodont Therapsids (Synapsida) during the End-Permian Mass Extinction
Cited by: 63
Author(s): Adam K. Huttenlocker
Software Mentions: 6
Published: almost 11 years ago

10.3389/fmicb.2017.01530

Host Ecology Rather Than Host Phylogeny Drives Amphibian Skin Microbial Community Structure in the Biodiversity Hotspot of Madagascar
Cited by: 67
Author(s): Molly C. Bletz, Holly Archer, Reid N. Harris, Valerie J. McKenzie, Falitiana C. E. Rabemananjara, Andolalao Rakotoarison, Miguel Vences
Software Mentions: 6
Published: over 7 years ago

10.1371/currents.tol.099161de5eabdee073fd3d21a44518dc

Arbor: Comparative Analysis Workflows for the Tree of Life
Cited by: 14
Author(s): Luke J. Harmon, Jeffrey Baumes, Charles E. Hughes, Jorge Soberón, Chelsea D. Specht, Wesley Turner, Curtis Lisle, Robert Thacker
Software Mentions: 6
Published: almost 12 years ago

10.3389/fmicb.2019.00065

Comparison of Microbial Communities in the Sediments and Water Columns of Frozen Cryoconite Holes in the McMurdo Dry Valleys, Antarctica
Cited by: 29
Author(s): Pacifica Sommers, John L. Darcy, Dorota L. Porazinska, Eli M. S. Gendron, Andrew G. Fountain, Felix Jacob Zamora, Vincent Kim, Kaelin M. Cawley, Adam J. Solon, Lara Vimercati, Jenna Ryder, Steven K. Schmidt
Software Mentions: 6
Published: almost 6 years ago

10.1038/s41598-017-09083-7

Macroevolutionary diversification of glands for chemical communication in squamate reptiles
Cited by: 30
Author(s): Roberto García‐Roa, Manuel López Jara, Simon Baeckens, Pílar López, Raoul Van Damme, José Martı́n, Daniel Pincheira‐Donoso
Software Mentions: 6
Published: about 7 years ago

10.1371/journal.pcbi.1004763

Ancestral Reconstruction
Cited by: 116
Author(s): Jeffrey B. Joy, Richard Liang, Rosemary M. McCloskey, Thuy Nguyen, Art F. Y. Poon
Software Mentions: 6
Published: over 8 years ago

10.1038/s41598-017-01981-0

Floccular fossa size is not a reliable proxy of ecology and behaviour in vertebrates
Cited by: 43
Author(s): Sérgio Ferreira-Cardoso, Ricardo Araújo, Nelson Martins, Gabriel G. Martins, Stig Walsh, R. M. S. Martins, Nikolay Kardjilov, Ingo Manke, André Hilger, Rui Castanhinha
Software Mentions: 6
Published: over 7 years ago

10.1002/ece3.6359

Acknowledging uncertainty in evolutionary reconstructions of ecological niches
Cited by: 11
Author(s): Hannah L. Owens, Vivian Ribeiro, Erin E. Saupe, Marlon E. Cobos, Peter A. Hosner, Jacob C. Cooper, Abdallah M. Samy, Vijay Barve, Narayani Barve, Carlos J. Muñoz‐R., A. Townsend Peterson
Software Mentions: 6
Published: over 4 years ago

10.1371/journal.pbio.3001022

A novel terpene synthase controls differences in anti-aphrodisiac pheromone production between closely related Heliconius butterflies
Cited by: 27
Author(s): Kathy Darragh, Anna Orteu, Daniella Black, Kelsey J. R. P. Byers, Daiane Szczerbowski, Ian A. Warren, Pasi Rastas, Ana Pinharanda, John W. Davey, Sylvia Fernanda Garza, Diana Abondano Almeida, Richard M. Merrill, W. Owen McMillan, Stefan Schulz, Chris D. Jiggins
Software Mentions: 6
Published: almost 4 years ago

10.3389/fmicb.2021.673969

Characterization of the Genitourinary Microbiome of 1,165 Middle-Aged and Elderly Healthy Individuals
Cited by: 2
Author(s): Junjie Qin, Shi Xiao-li, Junming Xu, Simin Yuan, Bo Zheng, Enpu Zhang, Guangtao Huang, Li Guo, Ganggang Jiang, Shan Gao, Tian Cheng, Ruochun Guo, Zhicong Fu, Qingru Huang, Rentao Yang, Wenyong Zhang, Shenghui Li, Song Wu
Software Mentions: 6
Published: over 3 years ago

10.3390/metabo11050269

Influence of Extraction Solvent on Nontargeted Metabolomics Analysis of Enrichment Reactor Cultures Performing Enhanced Biological Phosphorus Removal (EBPR)
Cited by: 4
Author(s): Nay Min Min Thaw Saw, Pipob Suwanchaikasem, Rogelio Zuniga-Montanez, Guanglei Qiu, Ezequiel M. Marzinelli, Stefan Wuertz, Rohan B.H. Williams
Software Mentions: 6
Published: over 3 years ago

10.3390/plants8120559

Identification of Stem Rust Resistance Genes in the Winter Wheat Collection from Southern Russia
Cited by: 5
Author(s): А. В. Алабушев, Н. Н. Вожжова, N. T. Kupreyshvili, Н. В. Шишкин, Д. М. Марченко, Е. В. Ионова
Software Mentions: 6
Published: almost 5 years ago

10.1186/s12862-017-0941-z

Fossils matter: improved estimates of divergence times in Pinus reveal older diversification
Cited by: 72
Author(s): Bianca Saladin, Andrew B. Leslie, Rafael O. Wüest, Glenn Litsios, Elena Conti, Nicolas Salamin, Niklaus E. Zimmermann
Software Mentions: 6
Published: over 7 years ago

10.3390/plants8070199

Intraspecific Fine-Root Trait-Environment Relationships across Interior Douglas-Fir Forests of Western Canada
Cited by: 20
Author(s): Camille E. Defrenne, M. Luke McCormack, W. Jean Roach, Shalom Daniel Addo-Danso, Suzanne W. Simard
Software Mentions: 6
Published: over 5 years ago

10.3390/metabo11040194

Plasma Metabolomic Profiling in 1391 Subjects with Overweight and Obesity from the SPHERE Study
Cited by: 12
Author(s): G. Frigerio, Chiara Favero, Diego Savino, Rosa Mercadante, Benedetta Albetti, Laura Dioni, Luisella Vigna, Valentina Bollati, Angela Cecilia Pesatori, Silvia Fustinoni
Software Mentions: 6
Published: over 3 years ago

10.1038/srep26648

Effect of short-term room temperature storage on the microbial community in infant fecal samples
Cited by: 38
Author(s): Yong Guo, Shenghui Li, Yashu Kuang, Jianxing He, Jinhua Lu, Bei-Jun Luo, Feng-Ju Jiang, Yaozhong Liu, Christopher J. Papasian, Huimin Xia, Hong‐Wen Deng, Xiu Qiu
Software Mentions: 6
Published: over 8 years ago

10.1002/ece3.6934

Mechanisms governing avian phylosymbiosis: Genetic dissimilarity based on neutral and MHC regions exhibits little relationship with gut microbiome distributions of Galápagos mockingbirds
Cited by: 7
Author(s): Ramona Fleischer, Alice Risely, Paquita E. A. Hoeck, Lukas F. Keller, Simone Sommer
Software Mentions: 6
Published: about 4 years ago

10.3389/fpls.2020.569811

All the Colors of the Rainbow: Diversification of Flower Color and Intraspecific Color Variation in the Genus Iris
Cited by: 13
Author(s): Katarzyna Roguz, Megan Gallagher, Esther Senden, Yamit Bar-Lev, Merav Lebel, Roni Heliczer, Yuval Sapir
Software Mentions: 6
Published: about 4 years ago

10.1186/s12862-016-0792-z

The phylogenetic significance of leaf anatomical traits of southern African Oxalis
Cited by: 10
Author(s): Michelle Jooste, L.L. Dreyer, Kenneth C. Oberlander
Software Mentions: 6
Published: about 8 years ago

10.1002/ece3.1787

Exceptional avian herbivores: multiple transitions toward herbivory in the bird order Anseriformes and its correlation with body mass
Cited by: 29
Author(s): Aaron M. Olsen
Software Mentions: 6
Published: about 9 years ago

10.1371/journal.pone.0147941

Comparative Analysis of Genome Diversity in Bullmastiff Dogs
Cited by: 24
Author(s): Sally Mortlock, Mehar S. Khatkar, Peter Williamson
Software Mentions: 6
Published: almost 9 years ago

10.1038/s41598-017-15554-8

Microbial Diversity of Genital Ulcers of HSV-2 Seropositive Women
Cited by: 7
Author(s): Supriya D. Mehta, Ashish Pradhan, Stefan J. Green, Ankur Naqib, Elijah Odoyo-June, Charlotte A. Gaydos, Sheila M. Barry, Alan Landay, Robert C. Bailey
Software Mentions: 6
Published: about 7 years ago

10.1038/s41598-021-93970-7

Genomic evolution of antimicrobial resistance in Escherichia coli
Cited by: 19
Author(s): Pimlapas Leekitcharoenphon, Markus Johansson, Patrick Munk, Burkhard Malorny, Magdalena Skarżyńska, Katharina Wadepohl, Gabriel Moyano, Ayla Hesp, Kees Veldman, Alex Bossers, Magdalena Zając, Dariusz Wasyl, Pascal Sandérs, B. Gonzales-Zorn, Michael S.M. Brouwer, Jaap A. Wagenaar, Dick Heederik, Dik Mevius, Frank Møller Aarestrup
Software Mentions: 6
Published: over 3 years ago

10.1038/sdata.2014.15

Tree of Sex: A database of sexual systems
Cited by: 199
Author(s): Tia‐Lynn Ashman, Doris Bachtrog, Heath Blackmon, Emma E. Goldberg, Matthew W. Hahn, Mark Kirkpatrick, Jun Kitano, Judith E. Mank, Itay Mayrose, Ray Ming, Sarah P. Otto, Catherine L. Peichel, Matthew W. Pennell, Nicolas Perrin, Laura Ross, Nicole Valenzuela, Jana C. Vamosi
Software Mentions: 5
Published: over 10 years ago

10.1186/s12862-019-1479-z

Identification and assessment of variable single-copy orthologous (SCO) nuclear loci for low-level phylogenomics: a case study in the genus Rosa (Rosaceae)
Cited by: 16
Author(s): Kévin Debray, Jordan Marie‐Magdelaine, Tom Ruttink, Jérémy Clotault, Fabrice Foucher, Valéry Malécot
Software Mentions: 5
Published: over 5 years ago

10.7717/peerj.2038

PhySortR: a fast, flexible tool for sorting phylogenetic trees in R
Cited by: 16
Author(s): Timothy G. Stephens, Debashish Bhattacharya, Mark A. Ragan, Cheong Xin Chan
Software Mentions: 5
Published: over 8 years ago

10.7717/peerj.7647

Interspecific variation in the limb long bones among modern rhinoceroses—extent and drivers
Cited by: 25
Author(s): Christophe Mallet, Raphaël Cornette, Guillaume Billet, Alexandra Houssaye
Software Mentions: 5
Published: about 5 years ago

10.1242/bio.014902

Feliform carnivores have a distinguished constitutive innate immune response
Cited by: 23
Author(s): Sonja K. Heinrich, Bettina Wachter, Ortwin Aschenborn, Susanne Thalwitzer, Jörg Melzheimer, Heribert Hofer, Gábor Á. Czirják
Software Mentions: 5
Published: over 8 years ago

10.7717/peerj.11950

Rephine.r: a pipeline for correcting gene calls and clusters to improve phage pangenomes and phylogenies
Cited by: 2
Author(s): Jason W. Shapiro, Catherine Putonti
Software Mentions: 5
Published: over 3 years ago

10.1098/rsos.190939

Implications of kappa-casein evolutionary diversity for the self-assembly and aggregation of casein micelles
Cited by: 8
Author(s): Jean Manguy, Denis C. Shields
Software Mentions: 5
Published: about 5 years ago

10.1098/rsos.181423

Geographical, temporal and individual factors influencing foraging behaviour and consistency in Australasian gannets
Cited by: 4
Author(s): Marlenne A. Rodríguez‐Malagón, Elodie C. M. Camprasse, Lauren P. Angel, John P. Y. Arnould
Software Mentions: 5
Published: over 4 years ago

10.1038/sdata.2019.7

The effect of 16S rRNA region choice on bacterial community metabarcoding results
Cited by: 222
Author(s): Yu. S. Bukin, Yuri P. Galachyants, И. В. Морозов, S. V. Bukin, А. S. Zakharenko, Т. I. Zemskaya
Software Mentions: 5
Published: almost 6 years ago

10.7717/peerj.1258

Humans differ in their personal microbial cloud
Cited by: 196
Author(s): James F. Meadow, Adam E. Altrichter, Ashley Bateman, Jason Stenson, Glen Brown, Jessica L. Green, Brendan J. M. Bohannan
Software Mentions: 5
Published: about 9 years ago

10.3389/fmicb.2019.03105

Community Assembly of Endophytic Fungi in Ectomycorrhizae of Betulaceae Plants at a Regional Scale
Cited by: 12
Author(s): Yong-Long Wang, Cheng Gao, Liang Chen, Niu‐Niu Ji, Bian Wu, Pingli Lu, Xingchun Li, Xin Qian, Pulak Maitra, Busayo Joshua Babalola, Yong Zheng, Liang‐Dong Guo
Software Mentions: 5
Published: almost 5 years ago

10.1073/pnas.2008281117

A SARS-CoV-2 vaccine candidate would likely match all currently circulating variants
Cited by: 192
Author(s): Bethany L. Dearlove, Éric Lewitus, Hongjun Bai, Yifan Li, Daniel B. Reeves, Michael Joyce, Paul T. Scott, Mihret F. Amare, Sandhya Vasan, Nelson L. Michael, Kayvon Modjarrad, Morgane Rolland
Software Mentions: 5
Published: about 4 years ago

10.7717/peerj.9368

Tip dating with fossil sites and stratigraphic sequences
Cited by: 7
Author(s): Benedict King, Martin Rücklin
Software Mentions: 5
Published: over 4 years ago

10.3389/fmicb.2020.00966

A Comparative Analysis of Ash Leaf-Colonizing Bacterial Communities Identifies Putative Antagonists of Hymenoscyphus fraxineus
Cited by: 21
Author(s): Kristina Ulrich, Regina Becker, Undine Behrendt, Michael Kube, Andreas Ulrich
Software Mentions: 5
Published: over 4 years ago

10.1098/rspb.2015.2840

Environmental drivers of crocodyliform extinction across the Jurassic/Cretaceous transition
Cited by: 40
Author(s): Jonathan Tennant, Philip D. Mannion, Paul Upchurch
Software Mentions: 5
Published: over 8 years ago

10.1371/journal.ppat.1009313

Diverging patterns of introgression from Schistosoma bovis across S. haematobium African lineages
Cited by: 24
Author(s): Olivier Rey, Ève Toulza, Cristian Chaparro, Jean‐François Allienne, Julien Kincaid-Smith, Eglantine Mathieu‐Bégné, Fiona Allan, David Rollinson, Bonnie L. Webster, Jérôme Boissier
Software Mentions: 5
Published: almost 4 years ago

10.1098/rspb.2016.1587

Evolutionary heritage influences Amazon tree ecology
Cited by: 44
Author(s): Fernanda Coelho de Souza, Kyle G. Dexter, Oliver L. Phillips, Roel Brienen, Jérôme Chave, David Galbraith, Gabriela Lopez‐Gonzalez, Abel Monteagudo Mendoza, R. Toby Pennington, Lourens Poorter, Miguel Alexiades, Esteban Álvarez-Dávila, Ana Andrade, L. E. O. C. Aragão, Alejandro Araujo‐Murakami, E.J.M.M. Arets, Gerardo A. Aymard C, Christopher Baraloto, Jorcely Barroso, Damien Bonal, René Boot, José L. Camargo, J. A. Comiskey, Fernando Cornejo Valverde, Plínio Barbosa de Camargo, Anthony Di Fiore, Fernando Elias, Terry L. Erwin, Ted R. Feldpausch, Leandro Valle Ferreira, Nikolaos M. Fyllas, Emanuel Gloor, Bruno Hérault, R. Herrera, Níro Higuchi, Eurídice N. Honorio Coronado, Timothy J. Killeen, William F. Laurance, Susan G. Laurance, J. Lloyd, Thomas Ε. Lovejoy, Yadvinder Malhi, Leandro Maracahipes, Beatriz Schwantes Marimon, Casimiro Mendoza, Paulo S. Morandi, David Neill, Percy Núñez Vargas, Edmar Almeida de Oliveira, Eddie Lenza, Walter A. Palacios, M. C. Peñuela, John J. Pipoly, Nigel C. A. Pitman, Adriana Prieto, Carlos Alberto Quesada, Hirma Ramírez‐Angulo, Agustín Rudas, Kalle Ruokolainen, Rafael de Paiva Salomão, Marcos Silveira, Juliana Stropp, Hans ter Steege, Raquel Thomas-Caesar, P. van der Hout, Geertje M. F. van der Heijden, P.J. van der Meer, Rodolfo Vásquez, Simone A. Vieira, Emilio Vilanova Torre, Vincent Vos, Ophelia Wang, Kenneth R. Young, Roderick Zagt, Timothy R. Baker
Software Mentions: 5
Published: almost 8 years ago

10.1186/s12898-019-0220-5

Ecological and life history traits are associated with Ross River virus infection among sylvatic mammals in Australia
Cited by: 11
Author(s): Michael Walsh
Software Mentions: 5
Published: almost 6 years ago

10.3390/v13061172

Comprehensive Evolutionary Analysis of Complete Epstein–Barr Virus Genomes from Argentina and Other Geographies
Cited by: 7
Author(s): Ana Catalina Blazquez, Ariel Berenstein, Carolina Torres, Agustín Izquierdo, Carol Lezama, Guillermo Moscatelli, Elena Noemí de Matteo, Mario Alejandro Lorenzetti, María Victoria Preciado
Software Mentions: 5
Published: over 3 years ago

10.1186/s12866-020-01884-7

Diversity and distribution of marine heterotrophic bacteria from a large culture collection
Cited by: 24
Author(s): Isabel Sanz-Sáez, Guillem Salazar, Pablo Sánchez, Elena Lara, Marta Royo-Llonch, Elisabet L. Sà, Teresa Lucena, María J. Pujalte, Dolors Vaqué, Carlos M. Duarte, Josep M. Gasol, Carlos Pedrós‐Alió, Olga Sánchez, Silvia G. Acinas
Software Mentions: 5
Published: over 4 years ago

10.1186/s12866-021-02195-1

Characteristics and variation of fecal bacterial communities and functions in isolated systolic and diastolic hypertensive patients
Cited by: 8
Author(s): Pan Wang, Ying Dong, Kun Zuo, Chide Han, Jie Jiao, Xinchun Yang, Jing Li
Software Mentions: 5
Published: over 3 years ago

10.1111/jeb.12591

Parallel chemical switches underlying pollinator isolation in <scp>A</scp> sian <scp>M</scp> itella 
Cited by: 33
Author(s): Tomoko Okamoto, Yudai Okuyama, Ryozo Gotô, Masahiko Tokoro, Makoto Katô
Software Mentions: 5
Published: almost 10 years ago

10.1098/rspb.2018.2387

The achaete–scute complex contains a single gene that controls bristle development in the semi-aquatic bugs
Cited by: 13
Author(s): Cédric Finet, Amélie Decaras, David Armisén, Abderrahman Khila
Software Mentions: 5
Published: almost 6 years ago

10.3390/v12091027

Novel Circoviruses Detected in Feces of Sonoran Felids
Cited by: 8
Author(s): Natalie Payne, Simona Kraberger, Rafaela S. Fontenele, Kara Schmidlin, Melissa Bergeman, Ivonne Cassaigne, Melanie Culver, Arvind Varsani, Koenraad Van Doorslaer
Software Mentions: 5
Published: about 4 years ago

10.1186/s12898-018-0171-2

Do avian blood parasites influence hypoxia physiology in a high elevation environment?
Cited by: 20
Author(s): Farah Ishtiaq, Sahas Barve
Software Mentions: 5
Published: over 6 years ago

10.3390/v11080694

Prediction of the Spatial Origin of Puumala Virus Infections Using L Segment Sequences Derived from a Generic Screening PCR
Cited by: 6
Author(s): Sabrina Weiß, Boris Klempa, Beate Tenner, Detlev H. Krüger, Jörg Hofmann
Software Mentions: 5
Published: over 5 years ago

10.1186/s12864-021-07906-6

Genome analyses of four Wolbachia strains and associated mitochondria of Rhagoletis cerasi expose cumulative modularity of cytoplasmic incompatibility factors and cytoplasmic hitchhiking across host populations
Cited by: 2
Author(s): Jennifer L. Morrow, Markus Riegler
Software Mentions: 5
Published: over 3 years ago

10.1371/journal.pone.0151075

Macro-Climatic Distribution Limits Show Both Niche Expansion and Niche Specialization among C4 Panicoids
Cited by: 8
Author(s): Lone Aagesen, Fernando Biganzoli, María Julia Bena, Ana C. Godoy-Bürki, Renata Reinheimer, Fernando O. Zuloaga
Software Mentions: 5
Published: over 8 years ago

10.3390/insects11060326

Evolutionary Patterns of Sex-Biased Genes in Three Species of Haplodiploid Insects
Cited by: 0
Author(s): Yujun Wang, Hua-Ling Wang, Xiaowei Wang, Shu‐Sheng Liu
Software Mentions: 5
Published: over 4 years ago

10.1016/j.meegid.2018.03.011

Clonal expansion across the seas as seen through CPLP-TB database: A joint effort in cataloguing Mycobacterium tuberculosis genetic diversity in Portuguese-speaking countries
Cited by: 16
Author(s): João Perdigão, Carla Silva, Jaciara Diniz, Catarina Pereira, Diana Machado, Jorge Ramos, Hugo Silva, Fernanda Abilleira, Clarice Brinck Brum, Ana Júlia Reis, Maíra Bidart de Macedo, João L. Scaini, Ana B. Silva, Lainister de Oliveira Esteves, Rita Macedo, Fernando Maltêz, Sofia Clemente, Elizabeth Coelho, Sofía Viegas, Paulo Rabna, Amabélia Rodrigues, Nuno Taveira, Luísa Jordão, Afrânio Lineu Kritski, José Roberto Lapa e Silva, Igor Mokrousov, David Couvin, Nalin Rastogi, Isabel Couto, Arnab Pain, Ruth McNerney, Taane G. Clark, Andréa von Groll, Elis R. Dalla-Costa, Maria Lúcia Rosa Rossetti, Pedro E. A. Silva, Miguel Viveiros, Isabel Portugal
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0244666

On genetic diversity in caraway: Genotyping of a large germplasm collection
Cited by: 2
Author(s): Daniel von Maydell, Heike Lehnert, Thomas Berner, Evelyn Klocke, Wolfram Junghanns, Jens Keilwagen, Frank Marthe
Software Mentions: 5
Published: almost 4 years ago

10.1186/s13567-020-00782-0

Genetic diversity and population structure of Tenacibaculum maritimum, a serious bacterial pathogen of marine fish: from genome comparisons to high throughput MALDI-TOF typing
Cited by: 19
Author(s): Sébastien Bridel, Frédéric Bourgeon, Arnaud Marie, Denis Saulnier, Sophie Pasek, Pierre Nicolas, Jean‐François Bernardet, Éric Duchaud
Software Mentions: 5
Published: over 4 years ago

10.1371/journal.pone.0089632

Episodic Positive Selection in the Evolution of Avian Toll-Like Receptor Innate Immunity Genes
Cited by: 85
Author(s): Catherine E. Grueber, Graham P. Wallis, Ian G. Jamieson
Software Mentions: 5
Published: over 10 years ago

Projects: cran: ape

Papers Mentioning ape 918