Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: cran: ape
https://packages.ecosyste.ms/registries/cran.r-project.org/packages/ape
Analyses of Phylogenetics and Evolution
102 versions
Latest release: over 1 year ago
374 dependent packages
72,114 downloads last month
Papers Mentioning ape 918
10.1038/s41598-020-66165-9
The ecological significance of birds feeding from the hand of humansCited by: 4
Author(s): Anders Pape Møller, Canwei Xia
Software Mentions: 2
Published: over 4 years ago
10.7554/eLife.43510
Using parasite genetic and human mobility data to infer local and cross-border malaria connectivity in Southern AfricaCited by: 73
Author(s): Sofonias K. Tessema, Amy Wesolowski, Anna Chen, Maxwell Murphy, Jordan Wilheim, Anna Rosa Mupiri, Nick W. Ruktanonchai, Victor A. Alegana, Andrew J. Tatem, Munyaradzi Tambo, Bradley Didier, Justin M. Cohen, Adam Bennett, Hugh J. W. Sturrock, Roland Gosling, Michelle S. Hsiang, David L. Smith, Davis R. Mumbengegwi, Jennifer L. Smith, Bryan Greenhouse
Software Mentions: 2
Published: over 5 years ago
10.1186/s12862-017-0903-5
Clock-dated phylogeny for 48% of the 700 species of Crotalaria (Fabaceae–Papilionoideae) resolves sections worldwide and implies conserved flower and leaf traits throughout its pantropical rangeCited by: 9
Author(s): Alexander Rockinger, Andréia Silva Flores, Susanne S. Renner
Software Mentions: 2
Published: over 7 years ago
10.3390/v10070366
Biodiversity, Evolution and Ecological Specialization of Baculoviruses: A Treasure Trove for Future Applied ResearchCited by: 32
Author(s): Julien Thézé, Carlos Lopez-Vaamonde, Jenny S. Cory, Elisabeth A. Herniou
Software Mentions: 2
Published: over 6 years ago
10.1038/srep24524
Regulatory mechanisms link phenotypic plasticity to evolvabilityCited by: 32
Author(s): Jordi van Gestel, Franz J. Weissing
Software Mentions: 2
Published: over 8 years ago
10.1186/s12864-015-2297-3
A maximum-likelihood approach for building cell-type trees by liftingCited by: 5
Author(s): Nishanth Ulhas Nair, Laura Hunter, Mingfu Shao, Paulina Grnarova, Yu Lin, Philipp Bücher, Bernard M. E. Moret
Software Mentions: 2
Published: almost 9 years ago
10.1371/journal.pgen.1007850
Whole genome variant association across 100 dogs identifies a frame shift mutation in DISHEVELLED 2 which contributes to Robinow-like syndrome in Bulldogs and related screw tail dog breedsCited by: 53
Author(s): Tamer Mansour, Katherine L Lucot, Sara E. Konopelski, Peter J. Dickinson, Beverly K. Sturges, Karen L. Vernau, Stacey S. Choi, Joshua A. Stern, Sara M Thomasy, Sophie Döring, Frank J.M. Verstraete, Eric G. Johnson, Daniel York, Robert B. Rebhun, Hsin‐Yi Henry Ho, C. Titus Brown, Danika L. Bannasch
Software Mentions: 2
Published: almost 6 years ago
10.1002/ecy.2622
Joint species movement modeling: how do traits influence movements?Cited by: 21
Author(s): Otso Ovaskainen, Danielle Leal Ramos, Eleanor M. Slade, Thomas Merckx, Gleb Tikhonov, J. Pennanen, Marco A. Pizo, Milton Cezar Ribeiro, Juan Manuel Morales
Software Mentions: 2
Published: over 5 years ago
10.1038/srep29799
Serotype IV Streptococcus agalactiae ST-452 has arisen from large genomic recombination events between CC23 and the hypervirulent CC17 lineagesCited by: 23
Author(s): Edmondo Campisi, C. Daniela Rinaudo, Claudio Donati, Mara Barucco, Giulia Torricelli, Morven S. Edwards, Carol J. Baker, I. Margarit, Roberto Rosini
Software Mentions: 2
Published: over 8 years ago
10.1002/ece3.3805
Functional trade‐offs and the phylogenetic dispersion of seed traits in a biodiversity hotspot of the Mountains of Southwest ChinaCited by: 9
Author(s): Kai Chen, Kevin S. Burgess, Xiang Yang, Ya Huang Luo, Lian‐Ming Gao, Li D
Software Mentions: 2
Published: almost 7 years ago
10.1186/1471-2164-7-304
Novel porcine repetitive elementsCited by: 7
Author(s): Ralph T. Wiedmann, Dan Nonneman, J. W. Keele
Software Mentions: 2
Published: almost 18 years ago
10.1371/journal.pgen.1007686
Genetic basis of thermal plasticity variation in Drosophila melanogaster body sizeCited by: 48
Author(s): Elvira Lafuente, David Duneau, Patrícia Beldade
Software Mentions: 2
Published: about 6 years ago
10.1371/journal.pgen.1000808
The Systemic Imprint of Growth and Its Uses in Ecological (Meta)GenomicsCited by: 278
Author(s): Sara Vieira-Silva, Eduardo P. C. Rocha
Software Mentions: 2
Published: almost 15 years ago
10.1007/s00239-019-09912-5
Investigating Evolutionary Rate Variation in BacteriaCited by: 27
Author(s): Beth Gibson, Adam Eyre‐Walker
Software Mentions: 2
Published: about 5 years ago
10.1186/s12862-014-0229-5
Gradual and contingent evolutionary emergence of leaf mimicry in butterfly wing patternsCited by: 37
Author(s): Takao Suzuki, Shuichiro Tomita, Hideki Sezutsu
Software Mentions: 2
Published: almost 10 years ago
10.1242/dev.166728
Neuromesodermal progenitors are a conserved source of spinal cord with divergent growth dynamicsCited by: 51
Author(s): Andrea Attardi, Timothy Fulton, Maria Florescu, Gopi Shah, Leila Mureşan, Martin O. Lenz, Courtney Lancaster, Jan Huisken, Alexander van Oudenaarden, Benjamin Steventon
Software Mentions: 2
Published: almost 7 years ago
10.1186/1297-9716-44-34
Population structure of the fish pathogen Flavobacterium psychrophilum at whole-country and model river levels in JapanCited by: 40
Author(s): Erina Fujiwara-Nagata, Céline Chantry-Darmon, Jean‐François Bernardet, M. Eguchi, Éric Duchaud, Pierre Nicolas
Software Mentions: 2
Published: almost 12 years ago