Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: adegenet

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/adegenet

Exploratory Analysis of Genetic and Genomic Data
43 versions
Latest release: almost 2 years ago
26 dependent packages
7,146 downloads last month

Papers Mentioning adegenet 767

10.1186/s12870-018-1351-0
Genetic diversity analysis of cultivated and wild grapevine (Vitis vinifera L.) accessions around the Mediterranean basin and Central Asia
Cited by: 91
Author(s): Summaira Riaz, Gabriella De Lorenzis, Dianne Velasco, Anne Koehmstedt, D. Maghradze, Z. Bobokashvili, M. Musayev, Goran Zdunić, Valérie Laucou, M. Andrew Walker, O. Failla, John E. Preece, Mallikarjuna K. Aradhya, Rosa Arroyo-García
Software Mentions: 1
Published: over 6 years ago
10.1371/journal.pone.0245939
Gene expression profiles of liver cancer cell lines reveal two hepatocyte-like and fibroblast-like clusters
Cited by: 8
Author(s): Keita Fukuyama, Masataka Asagiri, Masahiro Sugimoto, Hiraki Tsushima, Satoru Seo, Kojiro Taura, Shinji Üemoto, Keiko Iwaisako
Software Mentions: 1
Published: almost 4 years ago
10.3389/fpls.2018.00457
New Geographical Insights of the Latest Expansion of Fusarium oxysporum f.sp. cubense Tropical Race 4 Into the Greater Mekong Subregion
Cited by: 84
Author(s): Si-Jun Zheng, Fernando A. García-Bastidas, Xundong Li, Li Zeng, Tingting Bai, Shixiao Xu, Ke Yin, Hongxiang Li, Gang Fu, Yanchun Yu, Yang Liu, Huy Chung Nguyen, Bounneuang Douangboupha, Aye Aye Khaing, A. Drenth, Michael Seidl, H.J.G. Meijer, Gert H. J. Kema
Software Mentions: 1
Published: over 6 years ago
10.1002/ajpa.24302
Y‐chromosome variability and genetic history of <scp>Commons</scp> from <scp>Northern Italy</scp>
Cited by: 2
Author(s): Stefania Sarno, Rajiv Boscolo Agostini, Sara De Fanti, Gianmarco Ferri, Silvia Ghirotto, Giorgia Modenini, Davide Pettener, Alessio Boattini
Software Mentions: 1
Published: over 3 years ago
10.1371/journal.pone.0174216
Taming the late Quaternary phylogeography of the Eurasiatic wild ass through ancient and modern DNA
Cited by: 35
Author(s): E. Andrew Bennett, Sophie Champlot, Joris Peters, Benjamin S. Arbuckle, Sílvia Guimarães, Mélanie Pruvost, Shirli Bar‐David, Simon Davis, Mathieu Gautier, Petra Kaczensky, Ralph Kuehn, Marjan Mashkour, Arturo Morales Muñiz, Erich Pucher, Jean‐François Tournepiche, Hans‐Peter Uerpmann, Adrian Bălășescu, Mietje Germonpré, Can Yümni Gündem, Mahmoud‐Reza Hemami, Pierre-Élie Moullé, Aliye Ötzan, Margarete Uerpmann, Chris Walzer, Thierry Grange, Eva-María Geigl
Software Mentions: 1
Published: over 7 years ago
10.1371/journal.pone.0094626
Should I Stay or Should I Go? Dispersal and Population Structure in Small, Isolated Desert Populations of West African Crocodiles
Cited by: 29
Author(s): Guillermo Velo‐Antón, Raquel Godinho, João C. Campos
Software Mentions: 1
Published: over 10 years ago
10.1186/s40694-016-0019-5
Simple sequence repeat markers that identify Claviceps species and strains
Cited by: 20
Author(s): Barbara Gilmore, S. C. Alderman, Brian J. Knaus, Nahla V. Bassil, Ruth C. Martin, James E. Dombrowski, Jeremiah K. S. Dung
Software Mentions: 1
Published: almost 9 years ago
10.1371/journal.pone.0097473
Discriminating between the Effects of Founding Events and Reproductive Mode on the Genetic Structure of Triops Populations (Branchiopoda: Notostraca)
Cited by: 5
Author(s): Rebekah L. Horn, Ralph Kuehn, Victoria Drechsel, David E. Cowley
Software Mentions: 1
Published: over 10 years ago
10.1371/journal.pone.0166419
Application of RAD Sequencing for Evaluating the Genetic Diversity of Domesticated Panax notoginseng (Araliaceae)
Cited by: 18
Author(s): Yuezhi Pan, Xueqin Wang, Guiling Sun, Fusheng Li, Xun Gong
Software Mentions: 1
Published: about 8 years ago
10.1371/journal.pone.0253387
Classification of cannabis strains in the Canadian market with discriminant analysis of principal components using genome-wide single nucleotide polymorphisms
Cited by: 9
Author(s): Dan Jin, Philippe Henry, Jie Shan, Jie Chen
Software Mentions: 1
Published: over 3 years ago
10.1371/journal.pone.0165279
Large-Scale Genotyping-by-Sequencing Indicates High Levels of Gene Flow in the Deep-Sea Octocoral Swiftia simplex (Nutting 1909) on the West Coast of the United States
Cited by: 13
Author(s): Everett Mv, Park Lk, Berntson Ea, Elz Ae, Whitmire Ce, Keller Aa, M Clarke
Software Mentions: 1
Published: about 8 years ago
10.3390/genes9100465
Molecular Genotyping (SSR) and Agronomic Phenotyping for Utilization of Durum Wheat (Triticum durum Desf.) Ex Situ Collection from Southern Italy: A Combined Approach Including Pedigreed Varieties
Cited by: 25
Author(s): Stefania Marzario, Giuseppina Logozzo, Jacques David, Pierluigi Spagnoletti Zeuli, Tania Gioia
Software Mentions: 1
Published: about 6 years ago
10.1186/s12864-017-4173-9
Genetic variation and population structure of maize inbred lines adapted to the mid-altitude sub-humid maize agro-ecology of Ethiopia using single nucleotide polymorphic (SNP) markers
Cited by: 33
Author(s): Berhanu Tadesse Ertiro, Kassa Semagn, Biswanath Das, Michael Olsen, Maryke Labuschagne, Mosisa Worku, Dagne Wegary, Girum Azmach, Veronica Ogugo, Tolera Keno, Beyene Abebe, Temesgen Chibsa, Abebe Menkir
Software Mentions: 1
Published: about 7 years ago
10.3390/genes10030192
Beyond Biodiversity: Can Environmental DNA (eDNA) Cut It as a Population Genetics Tool?
Cited by: 116
Author(s): Clare I. M. Adams, Michael Knapp, Neil J. Gemmell, Gert‐Jan Jeunen, Michael Bunce, Miles D. Lamare, Helen R. Taylor
Software Mentions: 1
Published: over 5 years ago
10.3390/genes10080579
Gene Flow and Genetic Variation Explain Signatures of Selection across a Climate Gradient in Two Riparian Species
Cited by: 11
Author(s): Tara Hopley, Margaret Byrne
Software Mentions: 1
Published: over 5 years ago
10.3390/genes10090676
Whole Genome Diversity, Population Structure, and Linkage Disequilibrium Analysis of Chickpea (Cicer arietinum L.) Genotypes Using Genome-Wide DArTseq-Based SNP Markers
Cited by: 24
Author(s): Somayeh Farahani, Mojdeh Maleki, Rahim Mehrabi, Homayoun Kanouni, Armin Scheben, Jacqueline Batley, Reza Talebi
Software Mentions: 1
Published: about 5 years ago
10.3390/genes10100822
Genetic Diversity Assessed by Genotyping by Sequencing (GBS) in Watermelon Germplasm
Cited by: 12
Author(s): Kyung Jun Lee, Jung-Ro Lee, Sebastin Raveendar, Myoung-Jae Shin, Seong Hoon Kim, Gyu‐Taek Cho, Do Yoon Hyun
Software Mentions: 1
Published: about 5 years ago
10.3390/genes10120976
Genomic Divergence in Swedish Warmblood Horses Selected for Equestrian Disciplines
Cited by: 11
Author(s): Michela Ablondi, Staffan Eriksson, Sasha G. Tetu, A. Sabbioni, Åsa Viklund, Sofia Mikko
Software Mentions: 1
Published: almost 5 years ago
10.1371/journal.pone.0038145
Spatial Sorting Drives Morphological Variation in the Invasive Bird, Acridotheris tristis
Cited by: 56
Author(s): Cécile Berthouly‐Salazar, Berndt J. van Rensburg, Johannes J. Le Roux, Bettine J. van Vuuren, Cang Hui
Software Mentions: 1
Published: over 12 years ago
10.3390/genes11091054
Genomic Analysis of Selected Maize Landraces from Sahel and Coastal West Africa Reveals Their Variability and Potential for Genetic Enhancement
Cited by: 4
Author(s): Charles Nelimor, B. Badu‐Apraku, Ana Luísa Garcia‐Oliveira, Antonia Y. Tetteh, Paterne A. Agre, Assanvo Simon-Pierre N’guetta, Melaku Gedil
Software Mentions: 1
Published: about 4 years ago
10.1371/journal.pone.0141339
Genome-Wide Association Mapping of Yield and Grain Quality Traits in Winter Wheat Genotypes
Cited by: 88
Author(s): Wuletaw Tadesse, Francis C. Ogbonnaya, Abdulqader Jighly, Miguel Sánchez-García, Quahir Sohail, S. Rajaram, Michaël Baum
Software Mentions: 1
Published: about 9 years ago
10.1371/journal.pone.0234377
Evaluation of the effect of longitudinal connectivity in population genetic structure of endangered golden mahseer, Tor putitora (Cyprinidae), in Himalayan rivers: Implications for its conservation
Cited by: 6
Author(s): Pulala Raghuveer Yadav, Ajit Kumar, Syed Ainul Hussain, Susmita Gupta
Software Mentions: 1
Published: over 4 years ago
10.3390/genes12010110
Dissecting the Polygenic Basis of Cold Adaptation Using Genome-Wide Association of Traits and Environmental Data in Douglas-fir
Cited by: 12
Author(s): Amanda R. De La Torre, Benjamin Wilhite, Daniela Puiu, J. Bradley St. Clair, Marc W. Crepeau, Steven L. Salzberg, Charles H. Langley, Brian Allen, David B. Neale
Software Mentions: 1
Published: almost 4 years ago
10.1038/s41598-020-64692-z
Crossing the pond: genetic assignment detects lobster hybridisation
Cited by: 4
Author(s): Charlie D. Ellis, Tom L. Jenkins, Linda Svanberg, Susanne P. Eriksson, Jamie R. Stevens
Software Mentions: 1
Published: over 4 years ago
10.1186/s12864-017-4396-9
Genetic variation associated with healthy traits and environmental conditions in Vaccinium vitis-idaea
Cited by: 15
Author(s): Zobayer Alam, Julissa Roncal, Lourdes Peña‐Castillo
Software Mentions: 1
Published: almost 7 years ago
10.1371/journal.pone.0194398
Discriminant analysis of principal components and pedigree assessment of genetic diversity and population structure in a tetraploid potato panel using SNPs
Cited by: 34
Author(s): Sofía Irene Deperi, Martin Enrique Tagliotti, M. Cecilia Bedogni, Norma C. Manrique-Carpintero, Joseph Coombs, Ruofang Zhang, David S. Douches, Marcelo Huarte
Software Mentions: 1
Published: over 6 years ago
10.1186/s12864-015-2122-z
Genomic population structure and prevalence of copy number variations in South African Nguni cattle
Cited by: 37
Author(s): Magretha Diane Wang, K. Dzama, Charles A. Hefer, Farai C. Muchadeyi
Software Mentions: 1
Published: about 9 years ago
10.1371/journal.pone.0126309
Population Genetic Structure Within and among Seasonal Site Types in the Little Brown Bat (Myotis lucifugus) and the Northern Long-Eared Bat (M. septentrionalis)
Cited by: 22
Author(s): Laura Johnson, Brenna A. McLeod, Lynne E. Burns, K. Arseneault, Timothy R. Frasier, Hugh G. Broders
Software Mentions: 1
Published: over 9 years ago
10.1186/s12864-016-2583-8
Genomic variation among populations of threatened coral: Acropora cervicornis
Cited by: 59
Author(s): Crawford Drury, Katherine E. Dale, Jennifer M. Panlilio, S. V. Miller, Diego Lirman, Elizabeth Larson, Erich Bartels, Douglas L. Crawford, Marjorie F. Oleksiak
Software Mentions: 1
Published: over 8 years ago
10.1186/1471-2164-9-256
Pyrosequencing as a method for SNP identification in the rhesus macaque (Macaca mulatta)
Cited by: 43
Author(s): Jessica Satkoski, Ripan S. Malhi, Sree Kanthaswamy, RY Tito, Venkat S. Malladi, Smith Dg
Software Mentions: 1
Published: almost 17 years ago
10.1371/journal.pone.0170580
GBS-Based Deconvolution of the Surviving North American Collection of Cold-Hardy Kiwifruit (Actinidia spp.) Germplasm
Cited by: 13
Author(s): Arthur T. O. Melo, Robert S. Guthrie, Iago Hale
Software Mentions: 1
Published: almost 8 years ago
10.1186/s12862-021-01855-0
Genetic differentiation in an endangered and strongly philopatric, migrant shorebird
Cited by: 3
Author(s): Nelli Rönkä, Veli‐Matti Pakanen, Angela Pauliny, Robert L. Thomson, Kimmo Nuotio, Hannes Pehlak, Ole Thorup, Petteri Lehikoinen, Antti Rönkä, Donald Blomqvist, Kari Koivula, Laura Kvist
Software Mentions: 1
Published: over 3 years ago
10.5713/ajas.19.0958
Estimating genetic diversity and population structure of 22 chicken breeds in Asia using microsatellite markers
Cited by: 5
Author(s): Hee-Jong Roh, Seung-Chang Kim, Chang-Yeon Cho, Jinwook Lee, Dayeon Jeon, Dong-Kyo Kim, Kwan-Woo Kim, Fahmida Afrin, Yeoung-Gyu Ko, Jun Heon Lee, Solongo Batsaikhan, Triana Susanti, Sergey Hegay, Siton Kongvongxay, Neena Amatya Gorkhali, Lan Anh Nguyen Thi, Trinh Thi Thu Thao, Lakmalie Manikku
Software Mentions: 1
Published: almost 4 years ago
10.1371/journal.pntd.0007855
Phylogeography and population structure of the tsetse fly Glossina pallidipes in Kenya and the Serengeti ecosystem
Cited by: 6
Author(s): Rosemary Bateta, Norah P. Saarman, Winnie A. Okeyo, Kirstin Dion, Thomas Johnson, Paul O. Mireji, Sylvance Okoth, Imna Malele, Grace Murilla, Serap Aksoy, Adalgisa Caccone
Software Mentions: 1
Published: over 4 years ago
10.1371/journal.pntd.0000961
Phylogeography and Taxonomy of Trypanosoma brucei
Cited by: 86
Author(s): Oliver Balmer, Jon S. Beadell, Wendy Gibson, Adalgisa Caccone
Software Mentions: 1
Published: almost 14 years ago
10.1371/journal.pntd.0007435
The introduction of new hosts with human trade shapes the extant distribution of Toxoplasma gondii lineages
Cited by: 20
Author(s): Lokman Galal, Alioune Sarr, Thomas Cuny, Carine Brouat, Fatoumata Coulibaly, Mbacké Sembène, Mamadou Diagne, Mamoudou Diallo, Ahmadou Bamba Sow, Azra Hamidović, Nicolas Plault, Marie‐Laure Dardé, Daniel Ajzenberg, Aurélien Mercier
Software Mentions: 1
Published: over 5 years ago
10.1093/gbe/evw268
Genomic Signatures of Historical Allopatry and Ecological Divergence in an Island Lizard
Cited by: 10
Author(s): Richard P. Brown, Steve Paterson, Judith Risse
Software Mentions: 1
Published: about 8 years ago
10.1371/journal.pntd.0005485
Genetic diversity and population structure of the tsetse fly Glossina fuscipes fuscipes (Diptera: Glossinidae) in Northern Uganda: Implications for vector control
Cited by: 25
Author(s): Robert Opiro, Norah P. Saarman, Richard Echodu, Elizabeth A. Opiyo, Kirstin Dion, Alexis Halyard, William A. Dunn, Serap Aksoy, Adalgisa Caccone
Software Mentions: 1
Published: over 7 years ago
10.1371/journal.pntd.0005546
Tiger on the prowl: Invasion history and spatio-temporal genetic structure of the Asian tiger mosquito Aedes albopictus (Skuse 1894) in the Indo-Pacific
Cited by: 59
Author(s): Andrew J Maynard, Luke Ambrose, Robert D. Cooper, Weng K. Chow, Joseph Davis, Mutizwa Odwell Muzari, Andrew F. van den Hurk, Sonja Hall‐Mendelin, Jeomhee M. Hasty, Thomas R. Burkot, Michael J. Bangs, Lisa J. Reimer, Charles Butafa, Neil F. Lobo, Din Syafruddin, Yan Naung Maung Maung, Ahmad Raza, Nigel W. Beebe
Software Mentions: 1
Published: over 7 years ago
10.1371/journal.pntd.0005895
Multiple evolutionary origins of Trypanosoma evansi in Kenya
Cited by: 24
Author(s): Christine M. Kamidi, Norah P. Saarman, Kirstin Dion, Paul O. Mireji, Collins Ouma, Grace Murilla, Serap Aksoy, Achim Schnaufer, Adalgisa Caccone
Software Mentions: 1
Published: about 7 years ago
10.1371/journal.pntd.0003404
Genome and Phylogenetic Analyses of Trypanosoma evansi Reveal Extensive Similarity to T. brucei and Multiple Independent Origins for Dyskinetoplasty
Cited by: 116
Author(s): Jason Carnes, Atashi Anupama, Oliver Balmer, Andrew P. Jackson, Michael D. Lewis, Rob Brown, Igor Cestari, Marc Desquesnes, Claire Gendrin, Christiane Hertz‐Fowler, Hideo Imamura, Alasdair Ivens, Luděk Kořený, De‐Hua Lai, Annette MacLeod, Suzanne M. McDermott, Chris Merritt, Séverine Monnerat, Wonjong Moon, Peter J. Myler, Isabelle Phan, Gowthaman Ramasamy, Dhileep Sivam, Lun Zhao, Julius Lukeš, Ken Stuart, Achim Schnaufer
Software Mentions: 1
Published: almost 10 years ago
10.1371/journal.pntd.0007639
Dispersion of Leishmania (Leishmania) infantum in central-southern Brazil: Evidence from an integrative approach
Cited by: 14
Author(s): Aline Kuhn Sbruzzi Pasquali, Rafael Antunes Baggio, Walter A. Boeger, Nilsa González-Brítez, Deborah Carbonera Guedes, Enmanuel Céspedes Chaves, Vanete Thomaz Soccol
Software Mentions: 1
Published: about 5 years ago
10.1371/journal.pntd.0006747
Population genetic analysis of Chadian Guinea worms reveals that human and non-human hosts share common parasite populations
Cited by: 44
Author(s): Elizabeth A. Thiele, Mark L. Eberhard, James A. Cotton, Caroline Durrant, Jeffrey Berg, Kelsey Hamm, Ernesto Ruiz‐Tiben
Software Mentions: 1
Published: about 6 years ago
10.1186/s12864-017-4404-0
Transcriptome analyses of immune tissues from three Japanese frogs (genus Rana ) reveals their utility in characterizing major histocompatibility complex class II
Cited by: 7
Author(s): Quintin Lau, Takeshi Igawa, Ryuhei Minei, Tiffany A. Kosch, Yoko Satta
Software Mentions: 1
Published: almost 7 years ago
10.1371/journal.pgen.1006517
Evolved genetic and phenotypic differences due to mitochondrial-nuclear interactions
Cited by: 74
Author(s): Tara Zeynep Baris, Dominique Wagner, David I. Dayan, Xiao Du, Pierre Blier, Nicolas Pichaud, Marjorie F. Oleksiak, Douglas L. Crawford
Software Mentions: 1
Published: over 7 years ago
10.1155/2016/3654093
Using Genome-Wide SNP Discovery and Genotyping to Reveal the Main Source of Population Differentiation in<i>Nothofagus dombeyi</i>(Mirb.) Oerst. in Chile
Cited by: 8
Author(s): Rodrigo Hasbún, Jorge A. González, Carolina Iturra, Glenda Fuentes, Diego Alarcón, Eduardo Ruíz
Software Mentions: 1
Published: almost 9 years ago
10.1371/currents.RRN1026
Spatiotemporal dynamics in the early stages of the 2009 A/H1N1 influenza pandemic
Cited by: 13
Author(s): Thibaut Jombart, Rosalind M Eggo, Peter J. Dodd, François Balloux
Software Mentions: 1
Published: about 15 years ago
10.1186/s12863-020-0825-x
Genetic diversity and population structure analysis based on the high density SNP markers in Ethiopian durum wheat (Triticum turgidum ssp. durum)
Cited by: 43
Author(s): Admas Alemu, Tileye Feyissa, Tesfaye Letta, Bekele Abeyo
Software Mentions: 1
Published: almost 5 years ago
10.1371/journal.pcbi.1006258
Prediction of antibiotic resistance in Escherichia coli from large-scale pan-genome data
Cited by: 112
Author(s): Danesh Moradigaravand, Martin Palm, Anne Farewell, Ville Mustonen, Jonas Warringer, Leopold Parts
Software Mentions: 1
Published: almost 6 years ago
10.5713/ajas.18.0283
Genetic Diversity of Indonesian Cattle Breeds Based on Microsatellite Markers
Cited by: 18
Author(s): Paskah Partogi Agung, Ferdy Saputra, Sharif Hussein Sharif Zein, Ari Sulistyo Wulandari, Widya Pintaka Bayu Putra, Syahruddin Said, Jakaria Jakaria
Software Mentions: 1
Published: about 6 years ago
10.3390/plants10071471
Genetic Diversity and Structure of Rear Edge Populations of Sorbus aucuparia (Rosaceae) in the Hyrcanian Forest
Cited by: 3
Author(s): Hamed Yousefzadeh, Shahla Raeisi, Omid Esmailzadeh, Gholamali Jalali, Malek Nasiri, Łukasz Walas, Gregor Kozlowski
Software Mentions: 1
Published: over 3 years ago
10.1007/s00251-014-0822-1
454 screening of individual MHC variation in an endemic island passerine
Cited by: 16
Author(s): Catalina Gonzalez‐Quevedo, Karl P. Phillips, Lewis G. Spurgin, David S. Richardson
Software Mentions: 1
Published: almost 10 years ago
10.1038/s41598-020-76900-x
The dehydrins gene expression differs across ecotypes in Norway spruce and relates to weather fluctuations
Cited by: 10
Author(s): Jaroslav Čepl, Jan Stejskal, Jiří Korecký, Jakub Hejtmánek, Zuzana Faltinová, Milan Lstibůrek, Salvador A. Gezan
Software Mentions: 1
Published: almost 4 years ago
10.3390/insects11030169
Gene Flow Patterns among Aedes aegypti (Diptera: Culicidae) Populations in Sri Lanka
Cited by: 2
Author(s): H.S.D. Fernando, Menaka Hapugoda, Rushika Perera, William C. Black, B G D N K De Silva
Software Mentions: 1
Published: over 4 years ago
10.3390/plants8080268
Genetic Characterization of Apulian Olive Germplasm as Potential Source in New Breeding Programs
Cited by: 23
Author(s): Sara Sion, Francesca Taranto, Cinzia Montemurro, Giacomo Mangini, Salvatore Camposeo, Vittorio Falco, Antonia Gallo, Giovanni Mita, Olfa Saddoud Debbabi, Fathi Ben Amar, Stefano Pavan, Vincenzo Roseti, Monica Marilena Miazzi
Software Mentions: 1
Published: over 5 years ago
10.3897/phytokeys.77.11738
Morphological characteristics and genetic evidence reveals a new species of Manihot (Euphorbiaceae, Crotonoideae) from Goiás, Brazil
Cited by: 7
Author(s): Marcos José da Silva, Thannya Nascimento Soares, Patrícia Rasteiro Ordiale Oliveira
Software Mentions: 1
Published: over 7 years ago
10.1186/s40104-016-0130-8
Effects of Bacillus subtilis CSL2 on the composition and functional diversity of the faecal microbiota of broiler chickens challenged with Salmonella Gallinarum
Cited by: 65
Author(s): Ju Kyoung Oh, Edward Alain B. Pajarillo, Jong Pyo Chae, In Ho Kim, Dong Yang, Dae‐Kyung Kang
Software Mentions: 1
Published: almost 8 years ago
10.1186/s40781-015-0044-6
Discrimination of the commercial Korean native chicken population using microsatellite markers
Cited by: 18
Author(s): Na Young Choi, Dongil Seo, Slim Ben Jemaa, Hasina Sultana, Kang–Nyeong Heo, Cheorun Jo, Jun Heon Lee
Software Mentions: 1
Published: almost 10 years ago
10.1093/jac/dky506
Limited contribution of non-intensive chicken farming to ESBL-producing <i>Escherichia coli</i> colonization in humans in Vietnam: an epidemiological and genomic analysis
Cited by: 34
Author(s): Vinh Phu Nguyen, Dorota Jamrozy, Sébastien Matamoros, Juan Carrique-Mas, Huynh Mai Ho, Quoc Hieu Thai, Thi Nhu Mai Nguyen, Jaap A. Wagenaar, Guy Thwaites, Julian Parkhill, Constance Schultsz, Thi Hoa Ngo
Software Mentions: 1
Published: almost 6 years ago
10.1093/jxb/eru511
Genetic structure of<i>Miscanthus sinensis</i>and<i>Miscanthus sacchariflorus</i>in Japan indicates a gradient of bidirectional but asymmetric introgression
Cited by: 67
Author(s): Lindsay V. Clark, J. Ryan Stewart, Aya Nishiwaki, Yo Toma, Jens Bonderup Kjeldsen, Uffe Jørgensen, Hua Zhao, Junhua Peng, Ji Hye Yoo, Kweon Heo, Chang Yeon Yu, Toshihiko Yamada, Erik J. Sacks
Software Mentions: 1
Published: almost 10 years ago
10.1371/journal.ppat.1000855
A Timescale for Evolution, Population Expansion, and Spatial Spread of an Emerging Clone of Methicillin-Resistant Staphylococcus aureus
Cited by: 156
Author(s): Ulrich Nübel, Janina Dordel, Kevin Kurt, Birgit Strommenger, Henrik Westh, Sanjay Kumar Shukla, Helena Žemličková, Raphaël Leblois, Thierry Wirth, Thibaut Jombart, François Balloux, Wolfgang Witte
Software Mentions: 1
Published: over 14 years ago
10.7717/peerj.9518
Mediterranean swordfish (<i>Xiphias gladius</i>Linnaeus, 1758) population structure revealed by microsatellite DNA: genetic diversity masked by population mixing in shared areas
Cited by: 2
Author(s): Tommaso Righi, Andrea Splendiani, Tatiana Fioravanti, Andrea Petetta, Michela Candelma, Giorgia Gioacchini, Kyle Gillespie, Alex Hanke, Oliana Carnevali, Vincenzo Caputo Barucchi
Software Mentions: 1
Published: over 4 years ago
10.1038/s41598-020-79712-1
Genetic and demographic history define a conservation strategy for earth’s most endangered pinniped, the Mediterranean monk seal Monachus monachus
Cited by: 14
Author(s): Alexandros A. Karamanlidis, Tomaž Skrbinšek, George Amato, Panagiotis Dendrinos, Stephen J. Gaughran, Panagiotis Kasapidis, Alexander Kopatz, Astrid Vik Strønen
Software Mentions: 1
Published: almost 4 years ago
10.7717/peerj.7393
Genetic structure of two sympatric gudgeon fishes (<i>Xenophysogobio boulengeri</i>and<i>X. nudicorpa</i>) in the upper reaches of Yangtze River Basin
Cited by: 2
Author(s): Weiwei Dong, Dengqiang Wang, Haihua Tian, Yan Pu, Lixiong Yu, Xinbin Duan, Shaoping Liu, Daqing Chen
Software Mentions: 1
Published: over 5 years ago
10.7717/peerj.853
Patterns of evolution of MHC class II genes of crows (<i>Corvus</i>) suggest trans-species polymorphism
Cited by: 23
Author(s): John A. Eimes, Andrea K. Townsend, Irem Sepil, Isao Nishiumi, Yoko Satta
Software Mentions: 1
Published: over 9 years ago
10.7717/peerj.10270
Nuclear microsatellites reveal population genetic structuring and fine-scale pattern of hybridization in the Japanese mantis shrimp<i>Oratosquilla oratoria</i>
Cited by: 8
Author(s): Jiao Cheng, Nan Zhang, Zhongli Sha
Software Mentions: 1
Published: about 4 years ago
10.1093/aob/mcaa045
Patterns of hybridization and cryptic introgression among one- and four-needled pinyon pines
Cited by: 10
Author(s): Ryan Buck, Sandra Hyasat, Alice Hossfeld, Lluvia Flores‐Rentería
Software Mentions: 1
Published: over 4 years ago
10.1098/rspb.2020.0102
Taxonomic similarity does not predict necessary sample size for <i>ex situ</i> conservation: a comparison among five genera
Cited by: 33
Author(s): Sean Hoban, Taylor Callicrate, John Roscoe Clark, Susan Deans, Michael S. Dosmann, Jeremie B. Fant, Oliver Gailing, Kayri Havens, Andrew L. Hipp, Priyanka Kadav, Andrea T. Kramer, Matthew S. Lobdell, Tracy M. Magellan, Alan W. Meerow, Abby Meyer, Margaret R. Pooler, Vanessa Sánchez, Emma Spence, Patrick Thompson, Raakel Toppila, Seana K. Walsh, Murphy Westwood, Jordan Wood, M. Patrick Griffith
Software Mentions: 1
Published: over 4 years ago
10.7717/peerj.11498
Multiscale patterns of isolation by ecology and fine-scale population structure in Texas bobcats
Cited by: 3
Author(s): Imogene A. Cancellare, Elizabeth M. Kierepka, Jan E. Janečka, Byron V. Weckworth, Richard T. Kazmaier, Rocky Ward
Software Mentions: 1
Published: over 3 years ago
10.1186/s12863-015-0183-2
Variability of candidate genes, genetic structure and association with sugar accumulation and climacteric behavior in a broad germplasm collection of melon (Cucumis melo L.)
Cited by: 64
Author(s): Carmen Leida, C. Moser, Cristina Esteras, Ronan Sulpice, John E. Lunn, Frank de Langen, Antonio J. Monforte, Belén Picó
Software Mentions: 1
Published: over 9 years ago
10.1098/rsos.160880
Evidence for a genetic sex determination in Cnidaria, the Mediterranean red coral (<i>Corallium rubrum</i>)
Cited by: 16
Author(s): Marine Pratlong, Anne Haguenauer, Sandrine Chenesseau, Kelly Brener, Guillaume Mitta, Ève Toulza, Maurine Bonabaud, Stéphanie Rialle, Didier Aurelle, Pierre Pontarotti
Software Mentions: 1
Published: over 7 years ago
10.7717/peerj.1827
When homoplasy mimics hybridization: a case study of Cape hakes (<i>Merluccius capensis</i>and<i>M. paradoxus</i>)
Cited by: 15
Author(s): Romina Henriques, Sophie von der Heyden, Conrad A. Matthee
Software Mentions: 1
Published: over 8 years ago
10.7717/peerj.10581
Genotyping tools and resources to assess peanut germplasm: smut-resistant landraces as a case study
Cited by: 6
Author(s): Alicia N. Massa, Marina Bressano, Juan H. Soave, Mario I. Buteler, Guillermo Seijo, В. С. Соболев, Valerie A. Orner, Claudio Oddino, Sara J. Soave, Paola C. Faustinelli, Francisco J. de Blas, Marshall C. Lamb, Renée S. Arias
Software Mentions: 1
Published: almost 4 years ago
10.1186/1756-3305-7-263
Wild Trypanosoma cruzi I genetic diversity in Brazil suggests admixture and disturbance in parasite populations from the Atlantic Forest region
Cited by: 31
Author(s): Valdirene S. Lima, Ana María Jansen, Louisa A. Messenger, Michael A. Miles, Martin S. Llewellyn
Software Mentions: 1
Published: over 10 years ago
10.1098/rsos.172413
RADseq analyses reveal concordant Indian Ocean biogeographic and phylogeographic boundaries in the reef fish<i>Dascyllus trimaculatus</i>
Cited by: 11
Author(s): Eva Salas, Giacomo Bernardi, Michael L. Berumen, Michelle R. Gaither, Luiz A. Rocha
Software Mentions: 1
Published: over 5 years ago
10.1186/s12862-015-0354-9
Genetic evaluation of the evolutionary distinctness of a federally endangered butterfly, Lange’s Metalmark
Cited by: 14
Author(s): Benjamin Proshek, Julian R. Dupuis, Anna Engberg, Ken Davenport, Paul A. Opler, Jerry A. Powell, Felix A. H. Sperling
Software Mentions: 1
Published: over 9 years ago
10.1186/s12284-014-0007-4
Nuclear and chloroplast diversity and phenotypic distribution of rice (Oryza sativa L.) germplasm from the democratic people’s republic of Korea (DPRK; North Korea)
Cited by: 11
Author(s): Hyun-Jung Kim, Eung Gi Jeong, Sang-Nag Ahn, Jane L. Doyle, Namrata Singh, Anthony J. Greenberg, Yong Jae Won, Susan R. McCouch
Software Mentions: 1
Published: over 10 years ago
10.1126/sciadv.aau6849
Nonspecific effects of oral vaccination with live-attenuated <i>Salmonella</i> Typhi strain Ty21a
Cited by: 11
Author(s): Shaun H. Pennington, Daniela M. Ferreira, Eva Caamaño-Gutiérrez, Jesús Reiné, C. Hewitt, Angie Hyder-Wright, Stephen B. Gordon, Melita A. Gordon
Software Mentions: 1
Published: almost 6 years ago
10.1038/srep15223
Whole-Genome Sequence Analysis Reveals the Enterovirus D68 Isolates during the United States 2014 Outbreak Mainly Belong to a Novel Clade
Cited by: 45
Author(s): Weihua Huang, Guiqing Wang, Jian Zhuge, Sheila M. Nolan, Nevenka Dimitrova, John T. Fallon
Software Mentions: 1
Published: about 9 years ago
10.1186/s12862-015-0461-7
Genetic and morphological evidence for introgression between three species of willows
Cited by: 29
Author(s): Johan Fogelqvist, Alla V. Verkhozina, А. И. Катышев, Pascal Pucholt, Christina Dixelius, Ann Christin Rönnberg‐Wästljung, Martin Lascoux, Sofia Berlin
Software Mentions: 1
Published: about 9 years ago
10.1038/srep18788
Hybridization following population collapse in a critically endangered antelope
Cited by: 31
Author(s): Pedro Vaz Pinto, Pedro Beja, Nuno Ferrand, Raquel Godinho
Software Mentions: 1
Published: almost 9 years ago
10.3390/ani11010168
Genetic Population Structure of Wild Pigs in Southern Texas
Cited by: 5
Author(s): Johanna Delgado-Acevedo, Angeline Zamorano, Randy W. DeYoung, Tyler A. Campbell
Software Mentions: 1
Published: almost 4 years ago
10.1186/s12862-016-0784-z
Dispersal in the sub-Antarctic: king penguins show remarkably little population genetic differentiation across their range
Cited by: 28
Author(s): Gemma V. Clucas, Jane L. Younger, Damian Kao, Alex D. Rogers, Jonathan Handley, Gary D. Miller, Pierre Jouventin, Paul M. Nolan, Karim Gharbi, Karen J. Miller, Tom Hart
Software Mentions: 1
Published: about 8 years ago
10.1038/srep40879
Panmixia and dispersal from the Mediterranean Basin to Macaronesian Islands of a macrolichen species
Cited by: 37
Author(s): David Alors, Francesco Dal Grande, Paloma Cubas, Ana Crespo, Imke Schmitt, M. Carmen Molina, Pradeep K. Divakar
Software Mentions: 1
Published: almost 8 years ago
10.1186/s13071-020-04136-9
Interactions between Schistosoma haematobium group species and their Bulinus spp. intermediate hosts along the Niger River Valley
Cited by: 22
Author(s): Tom Pennance, Fiona Allan, Aidan M. Emery, Muriel Rabone, Joanne Cable, Amadou Garba, Amina Amadou Hamidou, Joanne P. Webster, David Rollinson, Bonnie L. Webster
Software Mentions: 1
Published: over 4 years ago
10.1186/1471-2148-14-28
Population structure of guppies in north-eastern Venezuela, the area of putative incipient speciation
Cited by: 6
Author(s): Magdalena Herdegen, Heather J. Alexander, Wiesław Babik, Jesús Mavárez, Felix Breden, Jacek Radwan
Software Mentions: 1
Published: almost 11 years ago
10.1186/1756-3305-4-122
Genetic diversity and population structure of Glossina pallidipes in Uganda and western Kenya
Cited by: 32
Author(s): Johnson O. Ouma, Jon S. Beadell, Chaz Hyseni, Loyce M. Okedi, E. S. Krafsur, Serap Aksoy, Adalgisa Caccone
Software Mentions: 1
Published: over 13 years ago
10.1038/s41598-017-02945-0
Wandering behaviour prevents inter and intra oceanic speciation in a coastal pelagic fish
Cited by: 3
Author(s): Gonçalo Silva, Regina L. Cunha, A. Ramos, Rita Castilho
Software Mentions: 1
Published: over 7 years ago
10.1038/s41598-017-04744-z
Genetic analyses reveal independent domestication origins of the emerging oil crop Paeonia ostii, a tree peony with a long-term cultivation history
Cited by: 19
Author(s): Liping Peng, Canhui Cai, Yuan Zhong, Xingxing Xu, Hong‐Li Xian, Fangyun Cheng, Jian‐Feng Mao
Software Mentions: 1
Published: over 7 years ago
10.1186/s13071-016-1454-0
An investigation into the potential effects of infrapopulation structure and other sources of sampling error, on population genetic studies of the transmission of Schistosoma japonicum (Trematoda: Digenea)
Cited by: 5
Author(s): Guan-Nan Huo, Liang Liu, Hongbin He, Stephen W. Attwood
Software Mentions: 1
Published: over 8 years ago
10.1186/s13071-021-04673-x
Sarcoptic mange in wild ruminants in Spain: solving the epidemiological enigma using microsatellite markers
Cited by: 19
Author(s): Barbara Moroni, Samer Angelone, Jesús M. Pérez, Anna Rita Molinar Min, Mario Pasquetti, Paolo Tizzani, Jorge Ramón Lopez‐Olvera, Marta Valldeperes, José E. Granados, Santiago Lavı́n, Gregorio Mentaberre, Leonor Camacho‐Sillero, Carlos Martínez‐Carrasco, Álvaro Oleaga, Mónica G. Candela, Pier Giuseppe Meneguz, Luca Rossi
Software Mentions: 1
Published: over 3 years ago
10.1186/1756-3305-5-222
The population structure of Glossina fuscipes fuscipes in the Lake Victoria basin in Uganda: implications for vector control
Cited by: 25
Author(s): Chaz Hyseni, Agapitus Kato, Loyce M. Okedi, Charles Masembe, Johnson O. Ouma, Serap Aksoy, Adalgisa Caccone
Software Mentions: 1
Published: about 12 years ago
10.1111/mec.14772
A genetics-based approach confirms immune associations with life history across multiple populations of an aquatic vertebrate (<i>Gasterosteus aculeatus</i> )
Cited by: 5
Author(s): James R. Whiting, Isabel S. Magalhaes, Abdul Rahman Singkam, Shaun Robertson, Daniele D’Agostino, Janette E. Bradley, Andrew D. C. MacColl
Software Mentions: 1
Published: over 6 years ago
10.1111/mec.12929
Population genomics of the killer whale indicates ecotype evolution in sympatry involving both selection and drift
Cited by: 47
Author(s): André E. Moura, John Kenny, Roy R. Chaudhuri, Margaret Hughes, Andreanna J. Welch, Ryan R Reisinger, P. J. Nico de Bruyn, Marilyn E. Dahlheim, Neil Hall, A. Rus Hoelzel
Software Mentions: 1
Published: about 10 years ago
10.1093/molbev/msz161
Admixture between Ancient Lineages, Selection, and the Formation of Sympatric Stickleback Species-Pairs
Cited by: 16
Author(s): Laura Dean, Isabel S. Magalhaes, Andrew D. Foote, Daniele D’Agostino, Suzanne McGowan, Andrew D. C. MacColl
Software Mentions: 1
Published: over 5 years ago
10.1038/s41598-021-95918-3
Genetic analyses reveal demographic decline and population differentiation in an endangered social carnivore, Asiatic wild dog
Cited by: 7
Author(s): Shrushti Modi, Samrat Mondol, Parag Nigam, Bilal Habib
Software Mentions: 1
Published: over 3 years ago
10.1038/s41598-021-95881-z
Concordance of the spectral properties of dorsal wing scales with the phylogeographic structure of European male Polyommatus icarus butterflies
Cited by: 5
Author(s): Gábor Piszter, Krisztián Kertész, Gábor Sramkó, Virág Krízsik, Zsolt Bálint, László Péter Biró
Software Mentions: 1
Published: over 3 years ago
10.1111/eva.12509
Population genetic structure and connectivity of deep-sea stony corals (Order Scleractinia) in the New Zealand region: Implications for the conservation and management of vulnerable marine ecosystems
Cited by: 23
Author(s): Cong Zeng, Ashley A. Rowden, Malcolm R. Clark, Jonathan P. A. Gardner
Software Mentions: 1
Published: over 7 years ago
10.1111/eva.13278
Evidence of stock connectivity, hybridization, and misidentification in white anglerfish supports the need of a genetics‐informed fisheries management framework
Cited by: 4
Author(s): Imanol Aguirre-Sarabia, Natalia Díaz-Arce, Iker Pereda-Agirre, Iñaki Mendibil, Agurtzane Urtizberea, H.D. Gerritsen, Finlay Burns, Ian Holmes, J. Landa, Ilaria Coscia, Iñaki Quinconces, Marina Santurtún, Antonella Zanzi, Jann T. Martinsohn, Naiara Rodríguez-Ezpeleta
Software Mentions: 1
Published: over 3 years ago
10.1111/eva.12449
Using fine-scale spatial genetics of Norway rats to improve control efforts and reduce leptospirosis risk in urban slum environments
Cited by: 39
Author(s): Jonathan L. Richardson, Mary K. Burak, Christian Hernandez, James M. Shirvell, Carol Mariani, Ticiana Carvalho-Pereira, Arsinoê Cristina Pertile, Jesús Alonso Panti–May, Gabriel Pedra, Soledad Serrano, Josh Taylor, Mayara Carvalho, Gorete Rodrigues, Federico Costa, James E. Childs, Albert I. Ko, Adalgisa Caccone
Software Mentions: 1
Published: over 7 years ago