Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: adegenet

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/adegenet

Exploratory Analysis of Genetic and Genomic Data
43 versions
Latest release: almost 2 years ago
26 dependent packages
7,146 downloads last month

Papers Mentioning adegenet 767

10.1038/s41598-019-49097-x
Divergent selection and genetic structure of Sideritis scardica populations from southern Balkan Peninsula as revealed by AFLP fingerprinting
Cited by: 16
Author(s): Martina Grdiša, Ivan Radosavljević, Zlatko Liber, Gjoshe Stefkov, Parthenopi Ralli, Paschalina Chatzopoulou, Klaudija Carović‐Stanko, Zlatko Šatović
Software Mentions: 3
Published: about 5 years ago
10.1111/eva.12591
Large-scale genetic panmixia in the blue shark (<i>Prionace glauca</i>): A single worldwide population, or a genetic lag-time effect of the “grey zone” of differentiation?
Cited by: 36
Author(s): Diane Bailleul, Alicia Mackenzie, Olivier Sacchi, François Poisson, Nicolas Bierne, Sophie Arnaud‐Haond
Software Mentions: 3
Published: over 6 years ago
10.3389/fmicb.2019.01708
Molecular Evolutionary Analysis of Potato Virus Y Infecting Potato Based on the VPg Gene
Cited by: 14
Author(s): Yanzhi Mao, Xuhong Sun, Jianguo Shen, Fangluan Gao, Guangwei Qiu, Teng Wang, Xianzhou Nie, Wei Zhang, Yanling Gao, Yuling Bai
Software Mentions: 3
Published: over 5 years ago
10.1038/s41431-020-0693-x
Cultural variation impacts paternal and maternal genetic lineages of the Hmong-Mien and Sino-Tibetan groups from Thailand
Cited by: 15
Author(s): Wibhu Kutanan, Rasmi Shoocongdej, Metawee Srikummool, Alexander Hübner, Thanatip Suttipai, Suparat Srithawong, Jatupol Kampuansai, Mark Stoneking
Software Mentions: 3
Published: over 4 years ago
10.1371/journal.pone.0142864
Evolutionary Quantitative Genomics of Populus trichocarpa
Cited by: 24
Author(s): Ilga Porth, Jaroslav Klápště, Athena D. McKown, Jonathan La Mantia, Robert D. Guy, Pär K. Ingvarsson, Richard Hamelin, Shawn D. Mansfield, Jürgen Ehlting, Carl J. Douglas, Yousry A. El‐Kassaby
Software Mentions: 3
Published: almost 9 years ago
10.1111/eva.12783
Genomic analyses suggest adaptive differentiation of northern European native cattle breeds
Cited by: 12
Author(s): Astrid Vik Strønen, Cino Pertoldi, Laura Iacolina, Haja N. Kadarmideen, Torsten Nygård Kristensen
Software Mentions: 3
Published: over 5 years ago
10.1002/ece3.4498
The population and landscape genetics of the European badger (<i>Meles meles</i>) in Ireland
Cited by: 15
Author(s): Jimena Guerrero, Andrew Byrne, John Lavery, Eleanor Presho, Gavin Kelly, Emily Courcier, James O’Keeffe, Ursula Fogarty, Denise O'Meara, Dennis Ensing, Carl McCormick, Roman Biek, Robin Skuce, Adrian Allen
Software Mentions: 3
Published: about 6 years ago
10.1371/journal.pone.0013038
Insights into the Genetic History of French Cattle from Dense SNP Data on 47 Worldwide Breeds
Cited by: 165
Author(s): Mathieu Gautier, Dénis Laloë, Katayoun Moazami‐Goudarzi
Software Mentions: 3
Published: about 14 years ago
10.1038/s41598-018-19323-z
Genetic fingerprinting of salmon louse (Lepeophtheirus salmonis) populations in the North-East Atlantic using a random forest classification approach
Cited by: 16
Author(s): Arne Jacobs, Michele De Noia, Kim Præbel, Øyvind Kanstad-Hanssen, Marta Paterno, David W. Jackson, Philip McGinnity, Armin Sturm, Kathryn R. Elmer, Martin S. Llewellyn
Software Mentions: 3
Published: almost 7 years ago
10.1002/ece3.4479
Specific <scp>MHC</scp> class I supertype associated with parasite infection and color morph in a wild lizard population
Cited by: 13
Author(s): Jessica Hacking, Devi Stuart‐Fox, Stephanie S. Godfrey, Michael G. Gardner
Software Mentions: 3
Published: about 6 years ago
10.1186/s12864-020-06928-w
Genome-wide association study identifies favorable SNP alleles and candidate genes for frost tolerance in pea
Cited by: 21
Author(s): Sana Beji, Véronique Fontaine, Rosemonde Devaux, Martine Thomas, Sandra Negro, Nasser Bahrman, Mathieu Siol, Grégoire Aubert, Judith Burstin, Jean‐Louis Hilbert, Bruno Delbreil, Isabelle Lejeune‐Hénaut
Software Mentions: 3
Published: over 4 years ago
10.3389/fmicb.2021.696835
Population Diversity, Dynamics, and Differentiation of Wheat Stripe Rust Pathogen Puccinia striiformis f. sp. tritici From 2010 to 2017 and Comparison With 1968 to 2009 in the United States
Cited by: 7
Author(s): Qing Bai, Anmin Wan, Meinan Wang, Deven R. See, Xianming Chen
Software Mentions: 3
Published: over 3 years ago
10.1111/eva.12877
Northern European <i>Salmo trutta</i> (L.) populations are genetically divergent across geographical regions and environmental gradients
Cited by: 23
Author(s): Dorte Bekkevold, Johann Höjesjö, Einar Eg Nielsen, David Aldvén, Thomas Damm Als, Marte Sodeland, Matthew Kent, Sigbjørn Lien, Michael Møller Hansen
Software Mentions: 3
Published: about 5 years ago
10.3390/biology9090277
Skim-Sequencing Based Genotyping Reveals Genetic Divergence of the Wild and Domesticated Population of Black Tiger Shrimp (Penaeus monodon) in the Indo-Pacific Region
Cited by: 5
Author(s): Li Lian Wong, Zulaikha Mat Deris, Yoji Igarashi, Songqian Huang, Shuichi Asakawa, Qasim Ayub, Shu Yong Lim, Mhd Ikhwanuddin, Shumpei Iehata, Ken‐ichi Okamoto, . Mariom, Md. Asaduzzaman
Software Mentions: 3
Published: about 4 years ago
10.1002/ece3.1261
4P: fast computing of population genetics statistics from large DNA polymorphism panels
Cited by: 34
Author(s): Andrea Benazzo, Alex Panziera, Giorgio Bertorelle
Software Mentions: 3
Published: almost 10 years ago
10.1111/eva.12893
Secondary contacts and genetic admixture shape colonization by an amphiatlantic epibenthic invertebrate
Cited by: 20
Author(s): Jamie Hudson, Kerstin Johannesson, Christopher D. McQuaid, Marc Rius
Software Mentions: 3
Published: almost 5 years ago
10.1002/ece3.6641
Distribution of genetic variation underlying adult migration timing in steelhead of the Columbia River basin
Cited by: 12
Author(s): Erin E. Collins, John S. Hargrove, Thomas A. Delomas, Shawn R. Narum
Software Mentions: 3
Published: over 4 years ago
10.1186/s12870-018-1576-y
SNP genotyping elucidates the genetic diversity of Magna Graecia grapevine germplasm and its historical origin and dissemination
Cited by: 35
Author(s): Gabriella De Lorenzis, Francesco Mercati, Carlo Bergamini, Maria Francesca Cardone, Antonio Lupini, Antonio Mauceri, Anna Caputo, Loredana Abbate, M Barbagallo, Donato Antonacci, Francesco Sunseri, Lucio Brancadoro
Software Mentions: 3
Published: almost 6 years ago
10.3389/fgene.2020.00218
Comparing the Performance of Microsatellites and RADseq in Population Genetic Studies: Analysis of Data for Pike (Esox lucius) and a Synthesis of Previous Studies
Cited by: 64
Author(s): Johanna Sunde, Yeşerin Yıldırım, Petter Tibblin, Anders Forsman
Software Mentions: 3
Published: over 4 years ago
10.1111/eva.13290
Genomic region associated with run timing has similar haplotypes and phenotypic effects across three lineages of Chinook salmon
Cited by: 6
Author(s): Stuart C. Willis, Jon E. Hess, Jeff Fryer, John Whiteaker, Shawn R. Narum
Software Mentions: 3
Published: about 3 years ago
10.3390/microorganisms9091932
Artificial Rearing of Atlantic Salmon Juveniles for Supportive Breeding Programs Induces Long-Term Effects on Gut Microbiota after Stocking
Cited by: 7
Author(s): Camille Lavoie, Kyle Wellband, Alysse Perreault, Louis Bernatchez, Nicolas Derôme
Software Mentions: 3
Published: about 3 years ago
10.1371/journal.pone.0059987
Conservation Priorities for Prunus africana Defined with the Aid of Spatial Analysis of Genetic Data and Climatic Variables
Cited by: 58
Author(s): Barbara Vinceti, Judy Loo, Hannes Gaisberger, Maarten J. van Zonneveld, Silvio Schueler, Heino Konrad, C. A. C. Kadu, Thomas Geburek
Software Mentions: 3
Published: over 11 years ago
10.1111/eva.13148
Intraspecific variation in landform engineering across a restored salt marsh shoreline
Cited by: 7
Author(s): Brittany M. Bernik, Candice Y. Lumibao, Scott Zengel, John H. Pardue, Michael J. Blum
Software Mentions: 3
Published: about 4 years ago
10.1371/journal.pone.0189234
Genetic diversity and differentiation among insular honey bee populations in the southwest Indian Ocean likely reflect old geographical isolation and modern introductions
Cited by: 14
Author(s): Maéva Angélique Techer, Johanna Clémencet, Christophe Simiand, Patrick Turpin, Lionel Garnery, Bernard Reynaud, Hélène Delatte
Software Mentions: 3
Published: almost 7 years ago
10.1099/mgen.0.000144
Deciphering the unexplored Leptospira diversity from soils uncovers genomic evolution to virulence
Cited by: 75
Author(s): Roman Thibeaux, Gregorio Iraola, Ignacio Ferrés, Emilie Bierque, Dominique Girault, Marie‐Estelle Soupé‐Gilbert, Mathieu Picardeau, Cyrille Goarant
Software Mentions: 3
Published: almost 7 years ago
10.1099/mgen.0.000403
Genomic analyses of Staphylococcus aureus clonal complex 45 isolates does not distinguish nasal carriage from bacteraemia
Cited by: 7
Author(s): Chandler C. Roe, Marc Stegger, Berit Lilje, Thor Bech Johannesen, Kim Lee Ng, Raphael N. Sieber, Elizabeth M. Driebe, David M. Engelthaler, Paal Skytt Andersen
Software Mentions: 3
Published: over 4 years ago
10.1038/s41598-019-38682-9
Unexpected population fragmentation in an endangered seabird: the case of the Peruvian diving-petrel
Cited by: 17
Author(s): Robin Cristofari, Paula Plaza, Claudia E. Fernández, Emiliano Trucchi, Nicolás Gouin, Céline Le Bohec, Carlos B. Zavalaga, Joanna Alfaro‐Shigueto, Guillermo Luna‐Jorquera
Software Mentions: 3
Published: almost 6 years ago
10.1038/s41598-018-34188-y
Genomic signatures of local adaptation to the degree of environmental predictability in rotifers
Cited by: 21
Author(s): Lluis Franch‐Gras, Christoph Hahn, Eduardo M. García‐Roger, Marı́a José Carmona, Manuel Serra, África Gómez
Software Mentions: 3
Published: about 6 years ago
10.1002/ece3.2872
RAD sequencing reveals genomewide divergence between independent invasions of the European green crab (<i>Carcinus maenas</i>) in the Northwest Atlantic
Cited by: 40
Author(s): Nicholas W. Jeffery, Claudio DiBacco, Mallory Van Wyngaarden, Lorraine C. Hamilton, Ryan R. E. Stanley, Renée Bernier, Jennifer Fitzgerald, Kyle Matheson, Cynthia H. McKenzie, Praveen Nadukkalam Ravindran, Robert G. Beiko, Ian Bradbury
Software Mentions: 3
Published: over 7 years ago
10.1038/s41598-020-69029-4
Molecular phylogenetic analysis and morphological reassessments of thief ants identify a new potential case of biological invasions
Cited by: 5
Author(s): Mostafa R. Sharaf, Dietrich Gotzek, Benoit Guénard, Brian L. Fisher, Abdulrahman S. Aldawood, Hathal M. Al Dhafer, Amr A. Mohamed
Software Mentions: 3
Published: over 4 years ago
10.1002/ece3.3553
Mitochondrial DNA of pre‐last glacial maximum red deer from NW Spain suggests a more complex phylogeographical history for the species
Cited by: 11
Author(s): Alba Rey‐Iglesia, Aurora Grandal-d’Anglade, Paula F. Campos, Anders J. Hansen
Software Mentions: 3
Published: about 7 years ago
10.1371/journal.pone.0141830
Discovery of Genome-Wide Microsatellite Markers in Scombridae: A Pilot Study on Albacore Tuna
Cited by: 5
Author(s): Natacha Nikolic, Stéphanie Duthoy, Antoine Destombes, Nathalie Bodin, Wendy West, Alexis Puech, Jérôme Bourjea
Software Mentions: 3
Published: about 9 years ago
10.1371/journal.pone.0201889
Population structure, relatedness and ploidy levels in an apple gene bank revealed through genotyping-by-sequencing
Cited by: 28
Author(s): B. Larsen, Kyle M. Gardner, Carsten Pedersen, Marian Ørgaard, Zoë Migicovsky, Sean Myles, Torben Bo Toldam‐Andersen
Software Mentions: 3
Published: over 6 years ago
10.1038/s41598-020-66450-7
Range-wide genetic structure in the thorn-tailed rayadito suggests limited gene flow towards peripheral populations
Cited by: 12
Author(s): Esteban Botero‐Delgadillo, Verónica Quirici, Yanina Poblete, Matías Acevedo, Élfego Cuevas, Camila Bravo, Margherita Cragnolini, Ricardo Rozzi, Élie Poulin, Jakob C. Mueller, Bart Kempenaers, Rodrigo A. Vásquez
Software Mentions: 3
Published: over 4 years ago
10.1186/s12936-021-03660-y
Genomic analysis reveals independent evolution of Plasmodium falciparum populations in Ethiopia
Cited by: 7
Author(s): Deriba Abera, Caleb Kipkurui Kibet, Teshome Degefa, Lucas Amenga-Etego, Joel L. Bargul, Lemu Golassa
Software Mentions: 3
Published: over 3 years ago
10.1002/ece3.83
Reef fish hybridization: lessons learnt from butterflyfishes (genus <i>Chaetodon</i>)
Cited by: 56
Author(s): Stefano R. Montanari, Lynne van Herwerden, Morgan S. Pratchett, Jean‐Paul A. Hobbs, Anneli Fugedi
Software Mentions: 3
Published: almost 13 years ago
10.1111/eva.13047
Migration dynamics of an important rice pest: The brown planthopper (<i>Nilaparvata lugens</i>) across Asia—Insights from population genomics
Cited by: 19
Author(s): James Hereward, Cai X, Ambrocio Melvin A. Matias, Gimme H. Walter, Chenxi Xu, Yongmo Wang
Software Mentions: 3
Published: over 4 years ago
10.1111/eva.12704
Population history provides foundational knowledge for utilizing and developing native plant restoration materials
Cited by: 26
Author(s): Rob Massatti, Holly R. Prendeville, Steve Larson, Bryce A. Richardson, Blair L. Waldron, Francis F. Kilkenny
Software Mentions: 3
Published: about 6 years ago
10.1371/journal.pone.0246983
Who infects whom?—Reconstructing infection chains of Mycobacterium avium ssp. paratuberculosis in an endemically infected dairy herd by use of genomic data
Cited by: 9
Author(s): Annette Nigsch, Suelee Robbe‐Austerman, Tod Stuber, Paulina D. Pavinski Bitar, Yrjö T. Gröhn, Y.H. Schukken
Software Mentions: 3
Published: over 3 years ago
10.1186/s12859-017-1988-y
An Eigenvalue test for spatial principal component analysis
Cited by: 22
Author(s): Valeria Montano, Thibaut Jombart
Software Mentions: 3
Published: almost 7 years ago
10.1371/journal.pntd.0006928
Molecular genotyping, diversity studies and high-resolution molecular markers unveiled by microsatellites in Giardia duodenalis
Cited by: 6
Author(s): Maurício Durigan, Cláudio Benício Cardoso-Silva, Maisa Ciampi‐Guillardi, Guilherme Toledo-Silva, Gustavo Maruyama Mori, Regina Maura Bueno Franco, Anete Pereira de Souza
Software Mentions: 3
Published: almost 6 years ago
10.1371/journal.pntd.0007554
Complex interplay of evolutionary forces shaping population genomic structure of invasive Aedes albopictus in southern Europe
Cited by: 22
Author(s): Verena Pichler, Panayiota Kotsakiozi, Beniamino Caputo, Paola Serini, Adalgisa Caccone, Alessandra della Torre
Software Mentions: 3
Published: over 5 years ago
10.1038/s41437-020-0344-6
Oceanographic features and limited dispersal shape the population genetic structure of the vase sponge Ircinia campana in the Greater Caribbean
Cited by: 7
Author(s): Sarah M. Griffiths, Mark J. Butler, Donald C. Behringer, Thierry Pérez, Richard F. Preziosi
Software Mentions: 3
Published: over 4 years ago
10.1002/ece3.4137
Genetic structure of two<i>Prosopis</i>species in Chaco areas: A lack of allelic diversity diagnosis and insights into the allelic conservation of the affected species
Cited by: 9
Author(s): Fábio de Matos Alves, Ângela L. B. Sartori, Maria Imaculada Zucchi, Ana M. G. Azevedo‐Tozzi, Evandro Vagner Tambarussi, Alessandro Alves‐Pereira, Anete Pereira de Souza
Software Mentions: 3
Published: over 6 years ago
10.7554/eLife.44471
Multiple pairs of allelic MLA immune receptor-powdery mildew AVRA effectors argue for a direct recognition mechanism
Cited by: 87
Author(s): Isabel M. L. Saur, Saskia Bauer, Barbara Kracher, Xunli Lu, Lamprinos Franzeskakis, Marion Müller, Björn Sabelleck, Florian Kümmel, Ralph Panstruga, Takaki Maekawa, Paul Schulze‐Lefert
Software Mentions: 3
Published: almost 6 years ago
10.1038/hdy.2014.31
Genome-wide analysis reveals the ancient and recent admixture history of East African Shorthorn Zebu from Western Kenya
Cited by: 47
Author(s): Mary Mbole-Kariuki, Tad S. Sonstegard, Alan Orth, Samuel M. Thumbi, Barend M. deC. Bronsvoort, Henry K. Kiara, Philip G. Toye, Ilana Conradie, Amy Jennings, Koos Coetzer, Mark E. J. Woolhouse, Olivier Hanotte, Miika Tapio
Software Mentions: 3
Published: over 10 years ago
10.3390/genes12091327
Genome-Wide SNPs Detect Hybridisation of Marsupial Gliders (Petaurus breviceps breviceps × Petaurus norfolcensis) in the Wild
Cited by: 7
Author(s): Monica Knipler, Mark Dowton, Katarina M. Mikac
Software Mentions: 3
Published: about 3 years ago
10.1371/journal.pgen.1007796
Evolution at two time frames: Polymorphisms from an ancient singular divergence event fuel contemporary parallel evolution
Cited by: 74
Author(s): Steven M. Van Belleghem, Carl Vangestel, Katrien De Wolf, Zoë De Corte, Markus Möst, Pasi Rastas, Luc De Meester, Frederik Hendrickx
Software Mentions: 3
Published: about 6 years ago
10.1371/journal.pgen.1008777
An Out-of-Patagonia migration explains the worldwide diversity and distribution of Saccharomyces eubayanus lineages
Cited by: 26
Author(s): Roberto F. Nespolo, Carlos A. Villarroel, Christian I. Oporto, Sebastián M. Tapia, Franco Vega-Macaya, Kamila Urbina, Matteo De Chiara, Simone Mozzachiodi, Ekaterina Mikhalev, Dawn Thompson, Luis F. Larrondo, Pablo Saenz‐Agudelo, Gianni Liti, Francisco A. Cubillos
Software Mentions: 3
Published: over 4 years ago
10.1038/s41438-018-0041-2
Genomic signatures of different adaptations to environmental stimuli between wild and cultivated Vitis vinifera L
Cited by: 30
Author(s): Annarita Marrano, Diego Micheletti, Silvia Lorenzi, David B. Neale, S. Grando
Software Mentions: 3
Published: over 6 years ago
10.3390/plants9070828
The Influence of a Seedling Recruitment Strategy and a Clonal Architecture on a Spatial Genetic Structure of a Salvia brachyodon (Lamiaceae) Population
Cited by: 3
Author(s): Ivan Radosavljević, Oleg Antonić, Dario Hruševar, Josip Križan, Zlatko Šatović, Doroteja Turković, Zlatko Liber
Software Mentions: 3
Published: over 4 years ago
10.1002/ece3.6545
Lousy grouse: Comparing evolutionary patterns in Alaska galliform lice to understand host evolution and host–parasite interactions
Cited by: 9
Author(s): Andrew D. Sweet, R. E. Wilson, Sarah A. Sonsthagen, Kevin P. Johnson
Software Mentions: 3
Published: over 4 years ago
10.1038/s41598-021-94802-4
Genetic diversity and population structure of ridge gourd (Luffa acutangula) accessions in a Thailand collection using SNP markers
Cited by: 3
Author(s): Grimar Abdiel Perez, Pumipat Tongyoo, Julapark Chunwongse, Hans de Jong, Anucha Wongpraneekul, Waraporn Sinsathapornpong, Paweena Chuenwarin
Software Mentions: 3
Published: over 3 years ago
10.3390/genes11010046
Population Genomics of an Anadromous Hilsa Shad Tenualosa ilisha Species across Its Diverse Migratory Habitats: Discrimination by Fine-Scale Local Adaptation
Cited by: 14
Author(s): Md. Asaduzzaman, Yoji Igarashi, Abdul Wahab, Md. Nahiduzzaman, Jalilur Rahman, Michael J. Phillips, Songqian Huang, Shuichi Asakawa, Moshiur Rahman, Li Lian Wong
Software Mentions: 3
Published: almost 5 years ago
10.3390/genes9060280
The Genetic Architecture Underlying the Evolution of a Rare Piscivorous Life History Form in Brown Trout after Secondary Contact and Strong Introgression
Cited by: 24
Author(s): Arne Jacobs, Martin Hughes, Paige C. Robinson, Colin E. Adams, Kathryn R. Elmer
Software Mentions: 3
Published: over 6 years ago
10.1534/g3.120.401187
Genetic Diversity and Population Structure of Races of <i>Fusarium oxysporum</i> Causing Cotton Wilt
Cited by: 16
Author(s): Hannah C Halpern, Peng Qi, Robert C. Kemerait, Marin Talbot Brewer
Software Mentions: 3
Published: about 4 years ago
10.1371/journal.pone.0253600
Genetic diversity and population structure analysis of bambara groundnut (Vigna subterrenea L) landraces using DArT SNP markers
Cited by: 15
Author(s): Charles U. Uba, Happiness Ogba Oselebe, Agajie Tesfaye, Wosene Gebreselassie Abtew
Software Mentions: 3
Published: over 3 years ago
10.1371/journal.pone.0186266
Morphological and molecular characterization of Brazilian populations of Diatraea saccharalis (Fabricius, 1794) (Lepidoptera: Crambidae) and the evolutionary relationship among species of Diatraea Guilding
Cited by: 9
Author(s): Fabricio José Biasotto Francischini, Jaqueline Bueno de Campos, Alessandro Alves‐Pereira, João Paulo Gomes Viana, Christopher C. Grinter, Steven J. Clough, Maria Imaculada Zucchi
Software Mentions: 3
Published: about 7 years ago
10.1371/journal.pone.0220327
Population genetic structure of Bemisia tabaci MED (Hemiptera: Aleyrodidae) in Korea
Cited by: 7
Author(s): Yujeong Park, Hye Yeong Nam, Sunghoon Baek, Si Hyeock Lee, Joon-Ho Lee
Software Mentions: 3
Published: over 5 years ago
10.1534/g3.120.401153
Genome-Wide Association Study Reveals Novel Candidate Genes Associated with Productivity and Disease Resistance to <i>Moniliophthora</i> spp. in Cacao (<i>Theobroma cacao</i> L.)
Cited by: 20
Author(s): Jaime A. Osorio-Guarín, Jhon A. Berdugo-Cely, Roberto A. Coronado-Silva, Eliana Baez, Yeirme Jaimes, Roxana Yockteng
Software Mentions: 3
Published: over 4 years ago
10.3390/plants9081035
Genetic Distinctiveness Highlights the Conservation Value of a Sicilian Manna Ash Germplasm Collection Assigned to Fraxinus angustifolia (Oleaceae)
Cited by: 6
Author(s): Loredana Abbate, Francesco Mercati, G. Noto, Myriam Heuertz, Francesco Carimi, Sergio Fatta Del Bosco, Rosario Schicchi
Software Mentions: 3
Published: over 4 years ago
10.1038/s41438-019-0132-8
Genetic diversity, population structure, and relationships in a collection of pepper (Capsicum spp.) landraces from the Spanish centre of diversity revealed by genotyping-by-sequencing (GBS)
Cited by: 57
Author(s): Leandro Pereira-Dias, Santiago Vilanova, Ana Fita, Jaime Prohens, Adrián Rodríguez‐Burruezo
Software Mentions: 3
Published: over 5 years ago
10.3390/plants10081619
Intraspecific Genetic Diversity of Cistus creticus L. and Evolutionary Relationships to Cistus albidus L. (Cistaceae): Meeting of the Generations?
Cited by: 3
Author(s): Brigitte Lukas, Dijana Jovanovic, Corinna Schmiderer, Stefanos Kostas, Angelos K. Kanellis, José Gómez Navarro, Zehra Aytaç, Ali Koç, Emel Sözen, Johannes Novak
Software Mentions: 3
Published: over 3 years ago
10.7717/peerj.2764
Life history and past demography maintain genetic structure, outcrossing rate, contemporary pollen gene flow of an understory herb in a highly fragmented rainforest
Cited by: 3
Author(s): Pilar Suárez-Montes, Mariana Chávez‐Pesqueira, Juan Núñez‐Farfán
Software Mentions: 3
Published: almost 8 years ago
10.3390/ani10122276
First Insights into the Population Genetic Structure and Heterozygosity–Fitness Relationship in Roe Deer Inhabiting the Area between the Alps and Dinaric Mountains
Cited by: 4
Author(s): Elena Bužan, Urška Gerič, Sandra Potušek, Katarina Flajšman, Boštjan Pokorny
Software Mentions: 3
Published: almost 4 years ago
10.7554/eLife.10559
How competition governs whether moderate or aggressive treatment minimizes antibiotic resistance
Cited by: 43
Author(s): Caroline Colijn, Ted Cohen
Software Mentions: 3
Published: about 9 years ago
10.1371/journal.pone.0151043
A Comparative Analysis of Genetic Diversity and Structure in Jaguars (Panthera onca), Pumas (Puma concolor), and Ocelots (Leopardus pardalis) in Fragmented Landscapes of a Critical Mesoamerican Linkage Zone
Cited by: 40
Author(s): Claudia Wultsch, Lisette P. Waits, Marcella J. Kelly
Software Mentions: 3
Published: over 8 years ago
10.1371/journal.pone.0189838
Convergent evolution and topologically disruptive polymorphisms among multidrug-resistant tuberculosis in Peru
Cited by: 19
Author(s): Louis Grandjean, Robert H. Gilman, Tomotada Iwamoto, Claudio U. Köser, Jorge Coronel, Mirko Zimic, M. Estée Török, Diepreye Ayabina, Michaela Kendall, Christophe Fraser, Simon R. Harris, Julian Parkhill, Sharon J. Peacock, David Moore, Caroline Colijn
Software Mentions: 3
Published: almost 7 years ago
10.1371/journal.ppat.1002851
Clonality Despite Sex: The Evolution of Host-Associated Sexual Neighborhoods in the Pathogenic Fungus Penicillium marneffei
Cited by: 41
Author(s): Daniel A. Henk, Revital Shahar-Golan, Khuraijam Ranjana Devi, Kylie J. Boyce, Nengyong Zhan, Natalie D. Fedorova, William C. Nierman, Po-Ren Hsueh, Kwok‐Yung Yuen, Tran Phu Manh Sieu, Nguyễn Văn Kính, Heiman Wertheim, Stephen Baker, Jeremy Day, Nongnuch Vanittanakom, Elaine Bignell, Alex Andrianopoulos, Matthew C. Fisher
Software Mentions: 3
Published: about 12 years ago
10.1186/s12862-015-0413-2
Beringian sub-refugia revealed in blackfish (Dallia): implications for understanding the effects of Pleistocene glaciations on Beringian taxa and other Arctic aquatic fauna
Cited by: 10
Author(s): Matthew A. Campbell, Naoki Takebayashi, J. Andrés López
Software Mentions: 3
Published: over 9 years ago
10.1186/s12862-018-1339-2
Testing the devil’s impact on southern Baltic and North Sea basins whitefish (Coregonus spp.) diversity
Cited by: 4
Author(s): Thomas Mehner, Kirsten Pohlmann, David Bittner, Jörg Freyhof
Software Mentions: 3
Published: almost 6 years ago
10.7717/peerj.6115
The role of Central American barriers in shaping the evolutionary history of the northernmost glassfrog,<i>Hyalinobatrachium fleischmanni</i>(Anura: Centrolenidae)
Cited by: 19
Author(s): Ángela María Mendoza, Wilmar Bolívar-García, Ella Vázquez‐Domínguez, Roberto Ibáñez, Gabriela Parra Olea
Software Mentions: 3
Published: almost 6 years ago
10.1038/s41598-021-96331-6
Genetic homogeneity, lack of larvae recruitment, and clonality in absence of females across western Mediterranean populations of the starfish Coscinasterias tenuispina
Cited by: 1
Author(s): Rocío Pérez‐Portela, Álex García-Cisneros, Marta Campos-Canet, Creu Palacín
Software Mentions: 3
Published: over 3 years ago
10.3390/ijms22179457
Molecular Characterization of Wheat Stripe Rust Pathogen (Puccinia striiformis f. sp. tritici) Collections from Nine Countries
Cited by: 11
Author(s): Qing Bai, Anmin Wan, Meinan Wang, Deven R. See, Xianming Chen
Software Mentions: 2
Published: about 3 years ago
10.1093/aob/mcv191
Lower selfing rates in metallicolous populations than in non-metallicolous populations of the pseudometallophyte<i>Noccaea caerulescens</i>(Brassicaceae) in Southern France
Cited by: 18
Author(s): Mathilde Mousset, Patrice David, Christophe Petit, Juliette Pouzadoux, Clémence Hatt, Élodie Flaven, Ophélie Ronce, Agnès Mignot
Software Mentions: 2
Published: almost 9 years ago
10.1093/aobpla/plz028
The morphometrics of autopolyploidy: insignificant differentiation among sexual–apomictic cytotypes
Cited by: 3
Author(s): Karin Bigl, Juraj Paule, Christoph Dobeš
Software Mentions: 2
Published: over 5 years ago
10.1186/1472-6785-14-11
Population genetic structure of gray wolves (Canis lupus) in a marine archipelago suggests island-mainland differentiation consistent with dietary niche
Cited by: 40
Author(s): Astrid Vik Strønen, Erin L. Navid, Michael S. Quinn, Paul C. Paquet, Heather M. Bryan, Christopher Tod Darimont
Software Mentions: 2
Published: almost 11 years ago
10.1186/s12862-021-01781-1
Evidence of past forest fragmentation in the Congo Basin from the phylogeography of a shade-tolerant tree with limited seed dispersal: Scorodophloeus zenkeri (Fabaceae, Detarioideae)
Cited by: 3
Author(s): Samuel Vanden Abeele, Steven Janssens, Rosalía Piñeiro, Olivier J. Hardy
Software Mentions: 2
Published: over 3 years ago
10.1186/s12862-020-01713-5
Multiple waves of freshwater colonization of the three-spined stickleback in the Japanese Archipelago
Cited by: 7
Author(s): Ryo Kakioka, Seiichi Mori, Tomoyuki Kokita, Takuya K. Hosoki, Atsushi J. Nagano, Asano Ishikawa, Manabu Kume, Atsushi Toyoda, Jun Kitano
Software Mentions: 2
Published: about 4 years ago
10.1186/s12862-015-0342-0
Selection on MHC class II supertypes in the New Zealand endemic Hochstetter’s frog
Cited by: 28
Author(s): Mette Lillie, Catherine E. Grueber, Jolene T. Sutton, Robyn Howitt, Phillip J. Bishop, Dianne Gleeson, Katherine Belov
Software Mentions: 2
Published: over 9 years ago
10.1186/s12862-017-1116-7
Patterns of genetic variation among geographic and host-plant associated populations of the peach fruit moth Carposina sasakii (Lepidoptera: Carposinidae)
Cited by: 13
Author(s): You-Zhu Wang, Bingyan Li, Ary A. Hoffmann, Li‐Jun Cao, Ya‐Jun Gong, Wei Song, Jia‐Ying Zhu, Shugang Wei
Software Mentions: 2
Published: almost 7 years ago
10.1186/s12862-019-1354-y
Islands and hybrid zones: combining the knowledge from “Natural Laboratories” to explain phylogeographic patterns of the European brown hare
Cited by: 3
Author(s): Themistoklis Giannoulis, Dimitrios Plageras, Costas Stamatis, Eleni Chatzivagia, Andreas Tsipourlianos, Periklis Birtsas, Charalambos Billinis, Franz Suchentrunk, Zissis Mamuris
Software Mentions: 2
Published: almost 6 years ago
10.1186/s12862-016-0754-5
Inconsistent phylogeographic pattern between a sperm dependent fish and its host: in situ hybridization vs dispersal
Cited by: 13
Author(s): Roland Vergilino, Christelle Leung, Bernard Angers
Software Mentions: 2
Published: about 8 years ago
10.1186/s12862-018-1343-6
Genetic diversity, connectivity and gene flow along the distribution of the emblematic Atlanto-Mediterranean sponge Petrosia ficiformis (Haplosclerida, Demospongiae)
Cited by: 18
Author(s): Ana Riesgo, Sergi Taboada, Rocío Pérez‐Portela, Pietro Melis, Joana R. Xavier, Gema Blasco, Susanna López‐Legentil
Software Mentions: 2
Published: almost 6 years ago
10.1186/s12862-016-0587-2
Long-term persisting hybrid swarm and geographic difference in hybridization pattern: genetic consequences of secondary contact between two Vincetoxicum species (Apocynaceae–Asclepiadoideae)
Cited by: 8
Author(s): Yue Li, Fumito Tada, Tadashi Yamashiro, Masayuki Morita
Software Mentions: 2
Published: almost 9 years ago
10.1186/s12862-018-1205-2
Gene flow and adaptive potential in a generalist ectoparasite
Cited by: 9
Author(s): Anaïs Appelgren, Verena Saladin, Heinz Richner, Blandine Doligez, Karen D. McCoy
Software Mentions: 2
Published: over 6 years ago
10.1186/s12864-018-5044-8
Genome-wide SNP analyses reveal high gene flow and signatures of local adaptation among the scalloped spiny lobster (Panulirus homarus) along the Omani coastline
Cited by: 21
Author(s): Rafaida Dhuhai Gharib Al-Breiki, Shannon R. Kjeldsen, Hasifa Afzal, Manal Saif Al Hinai, Kyall R. Zenger, Dean R. Jerry, Mohammed Al-Abri, Madjid Delghandi
Software Mentions: 2
Published: about 6 years ago
10.1186/s12864-017-4249-6
Whole genome sequencing of the monomorphic pathogen Mycobacterium bovis reveals local differentiation of cattle clinical isolates
Cited by: 19
Author(s): Moira Lasserre, Pablo Fresia, Gonzalo Greif, Gregorio Iraola, Miguel Castro-Ramos, Arturo Juambeltz, Álvaro Nuñez, Hugo Naya, Carlos Robello, Luisa Berná
Software Mentions: 2
Published: almost 7 years ago
10.1186/s12864-016-3044-0
Copy number variation contributes to cryptic genetic variation in outbreak lineages of Cryptococcus gattii from the North American Pacific Northwest
Cited by: 36
Author(s): Jacob L. Steenwyk, John Soghigian, John R. Perfect, John G. Gibbons
Software Mentions: 2
Published: about 8 years ago
10.1186/s12864-020-07278-3
Genomic targets for high-resolution inference of kinship, ancestry and disease susceptibility in orang-utans (genus: Pongo)
Cited by: 3
Author(s): Graham L. Banes, Emily D. Fountain, Alyssa Karklus, Haoming Huang, Nian-Hong Jang-Liaw, Daniel L. Burgess, Jennifer Wendt, Cynthia Moehlenkamp, George F. Mayhew
Software Mentions: 2
Published: almost 4 years ago
10.1093/bioinformatics/bts460
GenAlEx 6.5: genetic analysis in Excel. Population genetic software for teaching and research—an update
Cited by: 9,066
Author(s): Rod Peakall, Peter E. Smouse
Software Mentions: 2
Published: over 12 years ago
10.1155/2015/837904
Verification of the Chromosome Region 9q21 Association with Pelvic Organ Prolapse Using RegulomeDB Annotations
Cited by: 11
Author(s): Maryam B. Khadzhieva, Dmitry Kolobkov, С В Камоева, А. В. Иванова, С. К. Абилев, Lyubov E. Salnikova
Software Mentions: 2
Published: almost 10 years ago
10.1186/s12936-021-03635-z
Parasite genetic diversity reflects continued residual malaria transmission in Vhembe District, a hotspot in the Limpopo Province of South Africa
Cited by: 8
Author(s): Hazel B. Gwarinda, Sofonias K. Tessema, Jaishree Raman, Bryan Greenhouse, Lyn-Marié Birkholtz
Software Mentions: 2
Published: almost 4 years ago
10.1007/s42991-020-00072-4
First evaluation of the population structure, genetic diversity and landscape connectivity of the Endangered Arabian tahr
Cited by: 7
Author(s): Stephen M. Ross, Jean‐Marc Costanzi, Mansoor Al Jahdhami, Haitham Al Rawahi, Muḥammad Ghazālī, Helen Senn
Software Mentions: 2
Published: about 4 years ago
10.1111/2041-210X.12968
A fast likelihood solution to the genetic clustering problem
Cited by: 91
Author(s): Marie-Pauline Beugin, Thibault Gayet, Dominique Pontier, Sébastien Devillard, Thibaut Jombart
Software Mentions: 2
Published: almost 7 years ago
10.1093/molbev/msab086
Genetic Barriers to Historical Gene Flow between Cryptic Species of Alpine Bumblebees Revealed by Comparative Population Genomics
Cited by: 21
Author(s): Matthew J. Christmas, Julia C. Jones, Anna Olsson, Ola Wallerman, Ignas Bunikis, Marcin Kierczak, Valentina Peona, Kaitlyn M. Whitley, Tuuli Larva, Alexander Suh, Nicole E. Miller‐Struttmann, Jennifer C. Geib, Matthew T. Webster
Software Mentions: 2
Published: over 3 years ago
10.1093/molbev/msab092
Migration through a Major Andean Ecogeographic Disruption as a Driver of Genetic and Phenotypic Diversity in a Wild Tomato Species
Cited by: 14
Author(s): Jacob B. Landis, Christopher M. Miller, Amanda K. Broz, Alexandra Bennett, Noelia Carrasquilla‐Garcia, Douglas R. Cook, Patricia A. Bedinger, Gaurav D. Moghe
Software Mentions: 2
Published: over 3 years ago
10.1111/mec.12673
Human-facilitated metapopulation dynamics in an emerging pest species,<i>Cimex lectularius</i>
Cited by: 47
Author(s): Toby Fountain, Ludovic Duvaux, Gavin J. Horsburgh, Klaus Reinhardt, Roger K. Butlin
Software Mentions: 2
Published: almost 11 years ago
10.1111/mec.15763
Depletion of MHC supertype during domestication can compromise immunocompetence
Cited by: 9
Author(s): Willow Smallbone, Amy Ellison, Simon Poulton, Cock van Oosterhout, Joanne Cable
Software Mentions: 2
Published: almost 4 years ago
10.3390/vaccines9060608
Phylogenetic Structure and Sequential Dominance of Sub-Lineages of PRRSV Type-2 Lineage 1 in the United States
Cited by: 29
Author(s): Igor Adolfo Dexheimer Paploski, Nakarin Pamornchainavakul, Dennis N. Makau, Albert Rovira, Cesar Corzo, Declan C. Schroeder, Maxim C.-J. Cheeran, Andrea Doeschl‐Wilson, Rowland R. Kao, Samantha Lycett, Kimberly VanderWaal
Software Mentions: 2
Published: over 3 years ago