Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: adegenet

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/adegenet

Exploratory Analysis of Genetic and Genomic Data
43 versions
Latest release: almost 2 years ago
26 dependent packages
7,146 downloads last month

Papers Mentioning adegenet 767

10.7717/peerj.5089
Whole-genome amplification in double-digest RADseq results in adequate libraries but fewer sequenced loci
Cited by: 31
Author(s): Bruno A. S. de Medeiros, Brian D. Farrell
Software Mentions: 4
Published: over 6 years ago
10.1002/ece3.6973
Morphometric and genetic evidence for four species of gentoo penguin
Cited by: 10
Author(s): Joshua Tyler, Matthew T. Bonfitto, Gemma V. Clucas, Srinivas K. Reddy, Jane L. Younger
Software Mentions: 4
Published: about 4 years ago
10.1111/eva.12660
Impact of supplementation on deleterious mutation distribution in an exploited salmonid
Cited by: 26
Author(s): Anne‐Laure Ferchaud, Martin Laporte, Charles Perrier, Louis Bernatchez
Software Mentions: 4
Published: over 6 years ago
10.1128/mSystems.00205-17
Interaction between Host MicroRNAs and the Gut Microbiota in Colorectal Cancer
Cited by: 91
Author(s): Ce Yuan, Michael B. Burns, Subbaya Subramanian, Ran Blekhman
Software Mentions: 4
Published: over 6 years ago
10.1186/s12862-019-1420-5
Alternated selection mechanisms maintain adaptive diversity in different demographic scenarios of a large carnivore
Cited by: 6
Author(s): Rita Gomes Rocha, Vanessa Magalhães, José V. López‐Bao, W. van der Loo, Luís Llaneza, Francisco Álvares, Pedro J. Esteves, Raquel Godinho
Software Mentions: 4
Published: over 5 years ago
10.1186/s12870-016-0933-y
Identification by the DArTseq method of the genetic origin of the Coffea canephora cultivated in Vietnam and Mexico
Cited by: 39
Author(s): Andréa Garavito, Christophe Montagnon, Romain Guyot, Benoît Bertrand
Software Mentions: 4
Published: about 8 years ago
10.1038/s41598-021-97654-0
Assessment of the effectiveness of the EUROFORGEN NAME and Precision ID Ancestry panel markers for ancestry investigations
Cited by: 8
Author(s): Ditte Truelsen, Torben Tvedebrink, Helle Smidt Mogensen, Maryam Sharafi Farzad, Muhammad Adnan Shan, Niels Morling, Vânia Pereira, Claus Børsting
Software Mentions: 4
Published: about 3 years ago
10.1002/ece3.7403
Genomic divergence in sympatry indicates strong reproductive barriers and cryptic species within <i>Eucalyptus salubris</i>
Cited by: 9
Author(s): Rachel M. Binks, Dorothy A. Steane, Margaret Byrne
Software Mentions: 4
Published: over 3 years ago
10.1038/s41598-021-98098-2
Aphids harbouring different endosymbionts exhibit differences in cuticular hydrocarbon profiles that can be recognized by ant mutualists
Cited by: 8
Author(s): Corinne Hertaeg, Marion Risse, Christoph Vorburger, Consuelo Μ. De Moraes, Mark C. Mescher
Software Mentions: 4
Published: about 3 years ago
10.1038/s41598-020-70798-1
Signatures of local adaptation in the spatial genetic structure of the ascidian Pyura chilensis along the southeast Pacific coast
Cited by: 9
Author(s): Nicolás I. Segovia, Claudio A. González‐Wevar, Pilar A. Haye
Software Mentions: 4
Published: over 4 years ago
10.1371/journal.pone.0145165
Assessing Genetic Structure in Common but Ecologically Distinct Carnivores: The Stone Marten and Red Fox
Cited by: 12
Author(s): Mafalda Basto, Margarida Santos‐Reis, Luciana G. Simões, Clara Grilo, Luı́s Cardoso, Hélder Cortes, Michael William Bruford, Carlos Fernandes
Software Mentions: 4
Published: almost 9 years ago
10.1038/s41598-020-73272-0
Climatic oscillations in Quaternary have shaped the co-evolutionary patterns between the Norway spruce and its host-associated herbivore
Cited by: 13
Author(s): Jakub Goczał, Andrzej Oleksa, Robert Rossa, Igor J. Chybicki, Katarzyna Meyza, Radosław Plewa, Matti Landvik, Mauro Gobbi, Gernot Hoch, Vytautas Tamutis, Maksims Balalaikins, Dmitry Telnov, Maria-Magdalena Dascălu, Adam Tofilski
Software Mentions: 4
Published: about 4 years ago
10.1186/s12864-020-06783-9
An empirical comparison of population genetic analyses using microsatellite and SNP data for a species of conservation concern
Cited by: 70
Author(s): Shawna J. Zimmerman, Cameron L. Aldridge, Sara J. Oyler‐McCance
Software Mentions: 4
Published: over 4 years ago
10.1038/s41598-020-58398-5
Phylogenomic Perspective on a Unique Mycobacterium bovis Clade Dominating Bovine Tuberculosis Infections among Cattle and Buffalos in Northern Brazil
Cited by: 8
Author(s): Marília Lima da Conceição, Emilyn Costa Conceição, Ismari Perini Furlaneto, Sandro Patroca da Silva, Arthur Emil dos Santos Guimarães, Pedro Gomes, María Laura Boschiroli, Lorraine Michelet, Thomas A. Kohl, Katharina Kranzer, Loreno da Costa Francez, Luana Nepomuceno Gondim Costa Lima, Isabel Portugal, João Perdigão, Karla Valéria Batista Lima
Software Mentions: 4
Published: almost 5 years ago
10.1111/eva.12514
Profiling the immunome of little brown myotis provides a yardstick for measuring the genetic response to white-nose syndrome
Cited by: 24
Author(s): Michael E. Donaldson, Christina M. Davy, Craig K. R. Willis, Scott McBurney, Allysia Park, Christopher J. Kyle
Software Mentions: 4
Published: over 7 years ago
10.1038/s41598-020-57962-3
Population genetics of the European rabbit along a rural-to-urban gradient
Cited by: 3
Author(s): Madlen Ziege, Panagiotis Theodorou, Hannah Jüngling, Stefan Merker, Martin Plath, Bruno Streit, Hannes Lerp
Software Mentions: 4
Published: almost 5 years ago
10.1038/s41598-017-10560-2
The molecular basis of differential morphology and bleaching thresholds in two morphs of the coral Pocillopora acuta
Cited by: 13
Author(s): Hillary A. Smith, Hannah E. Epstein, Gergely Torda
Software Mentions: 4
Published: over 7 years ago
10.1038/s41598-017-12265-y
Nutrient quality of vertebrate dung as a diet for dung beetles
Cited by: 46
Author(s): Kevin Frank, Adrian Brückner, Andrea Hilpert, Michael Heethoff, Nico Blüthgen
Software Mentions: 4
Published: about 7 years ago
10.1371/journal.pone.0211285
Taxonomical over splitting in the Rhodnius prolixus (Insecta: Hemiptera: Reduviidae) clade: Are R. taquarussuensis (da Rosa et al., 2017) and R. neglectus (Lent, 1954) the same species?
Cited by: 44
Author(s): Juliana Damieli Nascimento, João Aristeu da Rosa, Fabian C. Salgado-Roa, Carolina Hernández, Carolina Pardo‐Díaz, Kaio Cesar Chaboli Alevi, Amanda Ravazi, Jader de Oliveira, Maria Tercília Vilela de Azeredo-Oliveira, Camilo Salazar, Juan David Ramírez
Software Mentions: 4
Published: almost 6 years ago
10.3389/fmicb.2020.01077
The Gene Flow Direction of Geographically Distinct Phytophthora infestans Populations in China Corresponds With the Route of Seed Potato Exchange
Cited by: 6
Author(s): Fangluan Gao, Changsheng Chen, Benjin Li, Qiyong Weng, Qinghe Chen
Software Mentions: 4
Published: over 4 years ago
10.1038/s41598-018-22580-7
Brettanomyces bruxellensis population survey reveals a diploid-triploid complex structured according to substrate of isolation and geographical distribution
Cited by: 70
Author(s): Marta Avramova, Alice Cibrario, Emilien Peltier, Monika Coton, Emmanuel Coton, Joseph Schacherer, Giuseppe Spano, Vittorio Capozzi, Giuseppe Blaiotta, Franck Salin, Marguerite Dols‐Lafargue, Paul R. Grbin, Chris Curtin, Warren Albertin, Isabelle Masneuf‐Pomarède
Software Mentions: 4
Published: over 6 years ago
10.1371/journal.ppat.1008998
Gallbladder carriage generates genetic variation and genome degradation in Salmonella Typhi
Cited by: 15
Author(s): Duy Pham Thanh, Nga Tran Vu Thieu, To Nguyen Thi Nguyen, Ho Ngoc Dan Thanh, Sabina Dongol, Abhilasha Karkey, Megan E Carey, Buddha Basnyat, Gordon Dougan, Maia A. Rabaa, Stephen Baker
Software Mentions: 4
Published: about 4 years ago
10.1002/ece3.3503
Radiation of the polymorphic Little Devil poison frog (<i>Oophaga sylvatica</i>) in Ecuador
Cited by: 16
Author(s): Alexandre B. Roland, Juan Carlos Santos, Bella C. Carriker, Stephanie N. Caty, Elicio Tapia, Luis A. Coloma, Lauren A. O’Connell
Software Mentions: 4
Published: about 7 years ago
10.1098/rsos.160992
Mixing of porpoise ecotypes in southwestern UK waters revealed by genetic profiling
Cited by: 30
Author(s): Michaël C. Fontaine, Olivier Thatcher, Nicolas Ray, Sylvain Piry, Andrew Brownlow, Nicholas J. Davison, Paul D. Jepson, Rob Deaville, Simon J. Goodman
Software Mentions: 4
Published: almost 8 years ago
10.3390/insects11070441
Genetic Diversity in Invasive Populations of Argentine Stem Weevil Associated with Adaptation to Biocontrol
Cited by: 11
Author(s): Thomas W. R. Harrop, Marissa F. Le Lec, Ruy Jáuregui, Shannon E. Taylor, Sarah N Inwood, Tracey Van Stijn, Hannah M. Henry, John Skelly, Siva Ganesh, Rachael Ashby, Jeanne M. E. Jacobs, S. L. Goldson, Peter K. Dearden
Software Mentions: 4
Published: over 4 years ago
10.1002/ece3.4478
Noninvasive western lowland gorilla's health monitoring: A decade of simian immunodeficiency virus surveillance in southern Cameroon
Cited by: 1
Author(s): C. Julian Villabona-Arenas, Ahidjo Ayouba, Amandine Esteban, Mirela D’arc, Eitel Mpoudi Ngole, Martine Peeters
Software Mentions: 4
Published: about 6 years ago
10.1371/journal.pone.0223953
Genomic impact of severe population decline in a nomadic songbird
Cited by: 14
Author(s): Ross Crates, George Olah, Marcin Adamski, Nicola Aitken, Samuel Banks, Dean Ingwersen, Louis Ranjard, Laura Rayner, Dejan Stojanović, Tomasz Suchan, Brenton von Takach, Robert Heinsohn
Software Mentions: 4
Published: about 5 years ago
10.3390/insects11120834
Low Genetic Variability in Bemisia tabaci MEAM1 Populations within Farmscapes of Georgia, USA
Cited by: 16
Author(s): Saurabh Gautam, Michael S. Crossley, Bhabesh Dutta, Timothy Coolong, Alvin M. Simmons, Andre da Silva, William E. Snyder, Rajagopalbabu Srinivasan
Software Mentions: 4
Published: about 4 years ago
10.1371/journal.pone.0249176
The role of a mechanistic host in maintaining arctic rabies variant distributions: Assessment of functional genetic diversity in Alaskan red fox (Vulpes vulpes)
Cited by: 0
Author(s): Tristan M. Baecklund, Jaycee Morrison, Michael E. Donaldson, Karsten Hueffer, Christopher J. Kyle
Software Mentions: 4
Published: over 3 years ago
10.1002/ece3.6185
Panmixia across elevation in thermally sensitive Andean dung beetles
Cited by: 3
Author(s): Ethan Linck Linck, Jorge Celi, Kimberly S. Sheldon
Software Mentions: 4
Published: over 4 years ago
10.1002/ece3.4291
Regional and local patterns of genetic variation and structure in yellow‐necked mice ‐ the roles of geographic distance, population abundance, and winter severity
Cited by: 10
Author(s): Sylwia D. Czarnomska, Magdalena Niedziałkowska, Tomasz Borowik, Bogumiła Jędrzejewska
Software Mentions: 4
Published: over 6 years ago
10.1186/s12862-020-01635-2
Ecological, genetic and evolutionary drivers of regional genetic differentiation in Arabidopsis thaliana
Cited by: 17
Author(s): Antonio R. Castilla, Belén Méndez‐Vigo, Arnald Marcer, Joaquín Martínez‐Minaya, David Conesa, F. Xavier Picó, Carlos Alonso‐Blanco
Software Mentions: 4
Published: over 4 years ago
10.1038/s41437-020-0348-2
The influence of a priori grouping on inference of genetic clusters: simulation study and literature review of the DAPC method
Cited by: 65
Author(s): Joshua M. Miller, Catherine I. Cullingham, Rhiannon Peery
Software Mentions: 4
Published: over 4 years ago
10.1186/s12864-020-07198-2
GWAS unveils features between early- and late-flowering pearl millets
Cited by: 10
Author(s): Oumar Diack, Ghislain Kanfany, Mame Codou Guèye, Ousmane Sy, Amadou Fofana, Hamidou Tall, Desalegn D. Serba, Leïla Zekraoui, Cécile Berthouly‐Salazar, Yves Vigouroux, Diaga Diouf, Ndjido Ardo Kane
Software Mentions: 4
Published: about 4 years ago
10.1186/s13059-015-0590-8
Field pathogenomics reveals the emergence of a diverse wheat yellow rust population
Cited by: 175
Author(s): Amelia Hubbard, Clare M. Lewis, Kentaro Yoshida, Ricardo H. Ramírez-González, C. de Vallavieille‐Pope, Jane Thomas, Sophien Kamoun, R. A. Bayles, Cristóbal Uauy, Diane G. O. Saunders
Software Mentions: 4
Published: almost 10 years ago
10.1002/ece3.3311
Evolutionary divergence in life history traits among populations of the Lake Malawi cichlid fish <i>Astatotilapia calliptera</i>
Cited by: 6
Author(s): Paul J. Parsons, Jon R. Bridle, Lukas Rüber, Martin J. Genner
Software Mentions: 4
Published: about 7 years ago
10.1590/1678-4685-GMB-2019-0380
HW_TEST, a program for comprehensive HARDY-WEINBERG equilibrium testing
Cited by: 8
Author(s): Fernando Azenha Bautzer Santos, Renan Barbosa Lemes, Paulo Alberto Otto
Software Mentions: 4
Published: almost 5 years ago
10.1111/1755-0998.12567
<i>apex</i> : phylogenetics with multiple genes
Cited by: 22
Author(s): Thibaut Jombart, Frederick I. Archer, Klaus Schliep, Zhian N. Kamvar, Rebecca B. Harris, Emmanuel Paradis, Jérôme Goudet, Hilmar Lapp
Software Mentions: 4
Published: over 8 years ago
10.1186/s12864-017-4392-0
Molecular characterization of larval development from fertilization to metamorphosis in a reef-building coral
Cited by: 36
Author(s): Marie E. Strader, Galina V. Aglyamova, Mikhail V. Matz
Software Mentions: 4
Published: almost 7 years ago
10.1111/mec.13186
Ecological host fitting of <i> <scp>T</scp> rypanosoma cruzi </i> <scp>T</scp> c <scp>I</scp> in <scp>B</scp> olivia: mosaic population structure, hybridization and a role for humans in <scp>A</scp> ndean parasite dispersal
Cited by: 37
Author(s): Louisa A. Messenger, Lineth García, Mathieu Vanhove, Carlos Huaranca, Marinely Bustamante, Mary-Cruz Torrico, Faustino Torrico, Michael A. Miles, Martin S. Llewellyn
Software Mentions: 4
Published: over 9 years ago
10.1002/ece3.5649
Molecular biogeography and host relations of a parasitoid fly
Cited by: 8
Author(s): David A. Gray, Henry D. Kunerth, Marlene Zuk, William H. Cade, Susan L. Balenger
Software Mentions: 4
Published: about 5 years ago
10.1186/s13073-018-0563-0
Exploration of Plasmodium vivax transmission dynamics and recurrent infections in the Peruvian Amazon using whole genome sequencing
Cited by: 25
Author(s): Annie N. Cowell, Hugo O. Valdivia, Danett K. Bishop, Elizabeth A. Winzeler
Software Mentions: 4
Published: over 6 years ago
10.1186/s12864-020-06820-7
Mining ancient microbiomes using selective enrichment of damaged DNA molecules
Cited by: 6
Author(s): Clemens L. Weiß, Marie-Theres Gansauge, Ayinuer Aximu‐Petri, Matthias Meyer, Hernán A. Burbano
Software Mentions: 4
Published: over 4 years ago
10.1111/mec.14972
Multiple chromosomal rearrangements in a hybrid zone between <i>Littorina saxatilis</i> ecotypes
Cited by: 93
Author(s): Rui Faria, Pragya Chaube, Hernán E. Morales, Tomas Larsson, Alan R. Lemmon, Emily Moriarty Lemmon, Marina Rafajlović, Marina Panova, Mark Ravinet, Kerstin Johannesson, Anja M. Westram, Roger K. Butlin
Software Mentions: 3
Published: almost 6 years ago
10.1111/mec.15367
Temporal dynamics of migration‐linked genetic variation are driven by streamflows and riverscape permeability
Cited by: 18
Author(s): Suzanne J. Kelson, Michael R. Miller, Tasha Q. Thompson, Sean O’Rourke, Stephanie M. Carlson
Software Mentions: 3
Published: almost 5 years ago
10.1371/journal.pone.0216992
Adaptive genetic variation underlies biocomplexity of Atlantic Cod in the Gulf of Maine and on Georges Bank
Cited by: 12
Author(s): Gemma V. Clucas, Lisa A. Kerr, Steven X. Cadrin, Douglas R. Zemeckis, Graham D. Sherwood, David Goethel, Zachary T. Whitener, Adrienne I. Kovach
Software Mentions: 3
Published: over 5 years ago
10.1371/journal.pone.0165504
MALDI-TOF Mass Spectrometry Enables a Comprehensive and Fast Analysis of Dynamics and Qualities of Stress Responses of Lactobacillus paracasei subsp. paracasei F19
Cited by: 10
Author(s): Ann-Sophie Schott, Jürgen Behr, Jennifer J. Quinn, Rudi F. Vogel
Software Mentions: 3
Published: about 8 years ago
10.1002/ece3.83
Reef fish hybridization: lessons learnt from butterflyfishes (genus <i>Chaetodon</i>)
Cited by: 56
Author(s): Stefano R. Montanari, Lynne van Herwerden, Morgan S. Pratchett, Jean‐Paul A. Hobbs, Anneli Fugedi
Software Mentions: 3
Published: almost 13 years ago
10.5194/aab-64-91-2021
Genetic diversity and population structure in divergent German cattle selection lines on the basis of milk protein polymorphisms
Cited by: 2
Author(s): Lisa G Hohmann, Christina Weimann, Carsten Scheper, G. Erhardt, Sven König
Software Mentions: 3
Published: over 3 years ago
10.1093/molbev/msx273
Spatial and Temporal Scales of Range Expansion in Wild Phaseolus vulgaris
Cited by: 48
Author(s): Andrea Ariani, Jorge C. Berny Mier y Teran, Paul Gepts
Software Mentions: 3
Published: about 7 years ago
10.3389/fpls.2021.517547
Genetic Diversity and Population Structure in Bryophyte With Facultative Nannandry
Cited by: 2
Author(s): Annick S. Lang, Thies Gehrmann, Nils Cronberg
Software Mentions: 3
Published: over 3 years ago
10.1093/molbev/msz083
Contrasting Paternal and Maternal Genetic Histories of Thai and Lao Populations
Cited by: 46
Author(s): Wibhu Kutanan, Jatupol Kampuansai, Metawee Srikummool, Andrea Brunelli, Silvia Ghirotto, Liliana Arias, Enrico Macholdt, Alexander Hübner, Roland Schröder, Mark Stoneking
Software Mentions: 3
Published: over 5 years ago
10.1371/journal.pone.0189838
Convergent evolution and topologically disruptive polymorphisms among multidrug-resistant tuberculosis in Peru
Cited by: 19
Author(s): Louis Grandjean, Robert H. Gilman, Tomotada Iwamoto, Claudio U. Köser, Jorge Coronel, Mirko Zimic, M. Estée Török, Diepreye Ayabina, Michaela Kendall, Christophe Fraser, Simon R. Harris, Julian Parkhill, Sharon J. Peacock, David Moore, Caroline Colijn
Software Mentions: 3
Published: almost 7 years ago
10.1371/journal.pone.0151043
A Comparative Analysis of Genetic Diversity and Structure in Jaguars (Panthera onca), Pumas (Puma concolor), and Ocelots (Leopardus pardalis) in Fragmented Landscapes of a Critical Mesoamerican Linkage Zone
Cited by: 40
Author(s): Claudia Wultsch, Lisette P. Waits, Marcella J. Kelly
Software Mentions: 3
Published: over 8 years ago
10.1186/s12864-021-07691-2
Rapid sequence evolution driven by transposable elements at a virulence locus in a fungal wheat pathogen
Cited by: 14
Author(s): Navreet Singh, Thomas Badet, Leen Nanchira Abraham, Daniel Croll
Software Mentions: 3
Published: over 3 years ago
10.1002/ece3.4058
Molecular signatures of host specificity linked to habitat specialization in <i>Exaiptasia</i> sea anemones
Cited by: 10
Author(s): Emily S. Bellis, Reid. B. Edlund, Hazel K. Berrios, Harilaos A. Lessios, Dee R. Denver
Software Mentions: 3
Published: over 6 years ago
10.1186/s12863-021-00958-3
Morphological characterization and genetic diversity analysis of Tunisian durum wheat (Triticum turgidum var. durum) accessions
Cited by: 11
Author(s): Maroua Ouaja, Bochra Amina Bahri, Lamia Aouini, Sahbi Ferjaoui, Maher Medini, Thierry C. Marcel, Sonia Hamza
Software Mentions: 3
Published: almost 4 years ago
10.1002/ece3.4137
Genetic structure of two<i>Prosopis</i>species in Chaco areas: A lack of allelic diversity diagnosis and insights into the allelic conservation of the affected species
Cited by: 9
Author(s): Fábio de Matos Alves, Ângela L. B. Sartori, Maria Imaculada Zucchi, Ana M. G. Azevedo‐Tozzi, Evandro Vagner Tambarussi, Alessandro Alves‐Pereira, Anete Pereira de Souza
Software Mentions: 3
Published: over 6 years ago
10.1371/journal.pone.0220327
Population genetic structure of Bemisia tabaci MED (Hemiptera: Aleyrodidae) in Korea
Cited by: 7
Author(s): Yujeong Park, Hye Yeong Nam, Sunghoon Baek, Si Hyeock Lee, Joon-Ho Lee
Software Mentions: 3
Published: over 5 years ago
10.1371/journal.pone.0186266
Morphological and molecular characterization of Brazilian populations of Diatraea saccharalis (Fabricius, 1794) (Lepidoptera: Crambidae) and the evolutionary relationship among species of Diatraea Guilding
Cited by: 9
Author(s): Fabricio José Biasotto Francischini, Jaqueline Bueno de Campos, Alessandro Alves‐Pereira, João Paulo Gomes Viana, Christopher C. Grinter, Steven J. Clough, Maria Imaculada Zucchi
Software Mentions: 3
Published: about 7 years ago
10.1371/journal.pone.0253600
Genetic diversity and population structure analysis of bambara groundnut (Vigna subterrenea L) landraces using DArT SNP markers
Cited by: 15
Author(s): Charles U. Uba, Happiness Ogba Oselebe, Agajie Tesfaye, Wosene Gebreselassie Abtew
Software Mentions: 3
Published: over 3 years ago
10.1002/ece3.4343
Quantifying dispersal between marine protected areas by a highly mobile species, the bottlenose dolphin,<i>Tursiops truncatus</i>
Cited by: 15
Author(s): Milaja Nykänen, Eileen Dillane, Anneli Englund, Andrew Foote, Simon Ingram, Marie Louis, Luca Mirimin, Machiel G. Oudejans, Emer Rogan
Software Mentions: 3
Published: over 6 years ago
10.3389/fmicb.2019.02670
Shedding Light on Specificity: Population Genomic Structure of a Symbiosis Between a Coral Reef Fish and Luminous Bacterium
Cited by: 10
Author(s): Alison L. Gould, Paul V. Dunlap
Software Mentions: 3
Published: about 5 years ago
10.3389/fmicb.2019.01708
Molecular Evolutionary Analysis of Potato Virus Y Infecting Potato Based on the VPg Gene
Cited by: 14
Author(s): Yanzhi Mao, Xuhong Sun, Jianguo Shen, Fangluan Gao, Guangwei Qiu, Teng Wang, Xianzhou Nie, Wei Zhang, Yanling Gao, Yuling Bai
Software Mentions: 3
Published: over 5 years ago
10.3389/fphys.2020.575968
Investigating Mitonuclear Genetic Interactions Through Machine Learning: A Case Study on Cold Adaptation Genes in Human Populations From Different European Climate Regions
Cited by: 1
Author(s): Alena Kalyakulina, Vincenzo Iannuzzi, Marco Sazzini, Paolo Garagnani, Sarika Jalan, Claudio Franceschi, Mikhail Ivanchenko, Cristina Giuliani
Software Mentions: 3
Published: about 4 years ago
10.3390/microorganisms9091932
Artificial Rearing of Atlantic Salmon Juveniles for Supportive Breeding Programs Induces Long-Term Effects on Gut Microbiota after Stocking
Cited by: 7
Author(s): Camille Lavoie, Kyle Wellband, Alysse Perreault, Louis Bernatchez, Nicolas Derôme
Software Mentions: 3
Published: about 3 years ago
10.1099/mgen.0.000144
Deciphering the unexplored Leptospira diversity from soils uncovers genomic evolution to virulence
Cited by: 75
Author(s): Roman Thibeaux, Gregorio Iraola, Ignacio Ferrés, Emilie Bierque, Dominique Girault, Marie‐Estelle Soupé‐Gilbert, Mathieu Picardeau, Cyrille Goarant
Software Mentions: 3
Published: almost 7 years ago
10.3389/fgene.2020.00218
Comparing the Performance of Microsatellites and RADseq in Population Genetic Studies: Analysis of Data for Pike (Esox lucius) and a Synthesis of Previous Studies
Cited by: 64
Author(s): Johanna Sunde, Yeşerin Yıldırım, Petter Tibblin, Anders Forsman
Software Mentions: 3
Published: over 4 years ago
10.1099/mgen.0.000403
Genomic analyses of Staphylococcus aureus clonal complex 45 isolates does not distinguish nasal carriage from bacteraemia
Cited by: 7
Author(s): Chandler C. Roe, Marc Stegger, Berit Lilje, Thor Bech Johannesen, Kim Lee Ng, Raphael N. Sieber, Elizabeth M. Driebe, David M. Engelthaler, Paal Skytt Andersen
Software Mentions: 3
Published: over 4 years ago
10.1093/aobpla/plaa003
Range-wide neutral and adaptive genetic structure of an endemic herb from Amazonian Savannas
Cited by: 17
Author(s): Amanda R. Silva, Luciana C. Resende‐Moreira, Carolina da Silva Carvalho, Éder Cristian Malta de Lanes, Mabel Ortiz-Vera, Pedro Lage Viana, Rodolfo Jaffé
Software Mentions: 3
Published: almost 5 years ago
10.3389/fmicb.2021.696835
Population Diversity, Dynamics, and Differentiation of Wheat Stripe Rust Pathogen Puccinia striiformis f. sp. tritici From 2010 to 2017 and Comparison With 1968 to 2009 in the United States
Cited by: 7
Author(s): Qing Bai, Anmin Wan, Meinan Wang, Deven R. See, Xianming Chen
Software Mentions: 3
Published: over 3 years ago
10.1371/journal.pntd.0006928
Molecular genotyping, diversity studies and high-resolution molecular markers unveiled by microsatellites in Giardia duodenalis
Cited by: 6
Author(s): Maurício Durigan, Cláudio Benício Cardoso-Silva, Maisa Ciampi‐Guillardi, Guilherme Toledo-Silva, Gustavo Maruyama Mori, Regina Maura Bueno Franco, Anete Pereira de Souza
Software Mentions: 3
Published: about 6 years ago
10.1371/journal.pntd.0007554
Complex interplay of evolutionary forces shaping population genomic structure of invasive Aedes albopictus in southern Europe
Cited by: 22
Author(s): Verena Pichler, Panayiota Kotsakiozi, Beniamino Caputo, Paola Serini, Adalgisa Caccone, Alessandra della Torre
Software Mentions: 3
Published: over 5 years ago
10.1002/ece3.2872
RAD sequencing reveals genomewide divergence between independent invasions of the European green crab (<i>Carcinus maenas</i>) in the Northwest Atlantic
Cited by: 40
Author(s): Nicholas W. Jeffery, Claudio DiBacco, Mallory Van Wyngaarden, Lorraine C. Hamilton, Ryan R. E. Stanley, Renée Bernier, Jennifer Fitzgerald, Kyle Matheson, Cynthia H. McKenzie, Praveen Nadukkalam Ravindran, Robert G. Beiko, Ian Bradbury
Software Mentions: 3
Published: over 7 years ago
10.1111/eva.12642
Measures of effective population size in sea otters reveal special considerations for wide-ranging species
Cited by: 18
Author(s): Roderick B. Gagne, M. Timothy Tinker, Kyle D. Gustafson, Katherine Ralls, Shawn Larson, L. Max Tarjan, Melissa A. Miller, Holly B. Ernest
Software Mentions: 3
Published: over 6 years ago
10.1186/s12936-021-03660-y
Genomic analysis reveals independent evolution of Plasmodium falciparum populations in Ethiopia
Cited by: 7
Author(s): Deriba Abera, Caleb Kipkurui Kibet, Teshome Degefa, Lucas Amenga-Etego, Joel L. Bargul, Lemu Golassa
Software Mentions: 3
Published: almost 4 years ago
10.1371/journal.pgen.1007796
Evolution at two time frames: Polymorphisms from an ancient singular divergence event fuel contemporary parallel evolution
Cited by: 74
Author(s): Steven M. Van Belleghem, Carl Vangestel, Katrien De Wolf, Zoë De Corte, Markus Möst, Pasi Rastas, Luc De Meester, Frederik Hendrickx
Software Mentions: 3
Published: about 6 years ago
10.3390/ani11092677
Genomic Evidence for Rare Hybridization and Large Demographic Changes in the Evolutionary Histories of Four North American Dove Species
Cited by: 8
Author(s): Flor María Ávila Hernández, J. Brown, Marissa Kaminski, Michael Harvey, Philip Lavretsky
Software Mentions: 3
Published: about 3 years ago
10.1371/journal.pgen.1008777
An Out-of-Patagonia migration explains the worldwide diversity and distribution of Saccharomyces eubayanus lineages
Cited by: 26
Author(s): Roberto F. Nespolo, Carlos A. Villarroel, Christian I. Oporto, Sebastián M. Tapia, Franco Vega-Macaya, Kamila Urbina, Matteo De Chiara, Simone Mozzachiodi, Ekaterina Mikhalev, Dawn Thompson, Luis F. Larrondo, Pablo Saenz‐Agudelo, Gianni Liti, Francisco A. Cubillos
Software Mentions: 3
Published: over 4 years ago
10.1002/ece3.6545
Lousy grouse: Comparing evolutionary patterns in Alaska galliform lice to understand host evolution and host–parasite interactions
Cited by: 9
Author(s): Andrew D. Sweet, R. E. Wilson, Sarah A. Sonsthagen, Kevin P. Johnson
Software Mentions: 3
Published: over 4 years ago
10.3389/fpls.2019.01015
Detection of First Marker Trait Associations for Resistance Against Sclerotinia sclerotiorum in Brassica juncea–Erucastrum cardaminoides Introgression Lines
Cited by: 39
Author(s): Kusum Rana, Chhaya Atri, Javed Akhatar, Ramanjeet Kaur, Anna Goyal, Mohini Singh, Nitin Kumar, Anju Sharma, P. Sandhu, Gurpreet Kaur, Martin J. Barbetti, S. S. Banga
Software Mentions: 3
Published: over 5 years ago
10.1534/g3.120.401153
Genome-Wide Association Study Reveals Novel Candidate Genes Associated with Productivity and Disease Resistance to <i>Moniliophthora</i> spp. in Cacao (<i>Theobroma cacao</i> L.)
Cited by: 20
Author(s): Jaime A. Osorio-Guarín, Jhon A. Berdugo-Cely, Roberto A. Coronado-Silva, Eliana Baez, Yeirme Jaimes, Roxana Yockteng
Software Mentions: 3
Published: over 4 years ago
10.3390/biology9090277
Skim-Sequencing Based Genotyping Reveals Genetic Divergence of the Wild and Domesticated Population of Black Tiger Shrimp (Penaeus monodon) in the Indo-Pacific Region
Cited by: 5
Author(s): Li Lian Wong, Zulaikha Mat Deris, Yoji Igarashi, Songqian Huang, Shuichi Asakawa, Qasim Ayub, Shu Yong Lim, Mhd Ikhwanuddin, Shumpei Iehata, Ken‐ichi Okamoto, . Mariom, Md. Asaduzzaman
Software Mentions: 3
Published: about 4 years ago
10.3390/plants9070828
The Influence of a Seedling Recruitment Strategy and a Clonal Architecture on a Spatial Genetic Structure of a Salvia brachyodon (Lamiaceae) Population
Cited by: 3
Author(s): Ivan Radosavljević, Oleg Antonić, Dario Hruševar, Josip Križan, Zlatko Šatović, Doroteja Turković, Zlatko Liber
Software Mentions: 3
Published: over 4 years ago
10.1186/s12862-018-1339-2
Testing the devil’s impact on southern Baltic and North Sea basins whitefish (Coregonus spp.) diversity
Cited by: 4
Author(s): Thomas Mehner, Kirsten Pohlmann, David Bittner, Jörg Freyhof
Software Mentions: 3
Published: about 6 years ago
10.1186/s12862-015-0413-2
Beringian sub-refugia revealed in blackfish (Dallia): implications for understanding the effects of Pleistocene glaciations on Beringian taxa and other Arctic aquatic fauna
Cited by: 10
Author(s): Matthew A. Campbell, Naoki Takebayashi, J. Andrés López
Software Mentions: 3
Published: over 9 years ago
10.3390/plants9081035
Genetic Distinctiveness Highlights the Conservation Value of a Sicilian Manna Ash Germplasm Collection Assigned to Fraxinus angustifolia (Oleaceae)
Cited by: 6
Author(s): Loredana Abbate, Francesco Mercati, G. Noto, Myriam Heuertz, Francesco Carimi, Sergio Fatta Del Bosco, Rosario Schicchi
Software Mentions: 3
Published: over 4 years ago
10.1111/eva.12580
Great tits and the city: Distribution of genomic diversity and gene–environment associations along an urbanization gradient
Cited by: 40
Author(s): Charles Perrier, Ana Lozano del Campo, Marta Szulkin, Virginie Demeyrier, Arnaud Grégoire, Anne Charmantier
Software Mentions: 3
Published: almost 7 years ago
10.1111/eva.13025
Urbanization reduces gene flow but not genetic diversity of stream salamander populations in the New York City metropolitan area
Cited by: 19
Author(s): Nicole Fusco, Ellen Pehek, Jason Munshi‐South
Software Mentions: 3
Published: over 4 years ago
10.3390/plants10081619
Intraspecific Genetic Diversity of Cistus creticus L. and Evolutionary Relationships to Cistus albidus L. (Cistaceae): Meeting of the Generations?
Cited by: 3
Author(s): Brigitte Lukas, Dijana Jovanovic, Corinna Schmiderer, Stefanos Kostas, Angelos K. Kanellis, José Gómez Navarro, Zehra Aytaç, Ali Koç, Emel Sözen, Johannes Novak
Software Mentions: 3
Published: over 3 years ago
10.7717/peerj.2764
Life history and past demography maintain genetic structure, outcrossing rate, contemporary pollen gene flow of an understory herb in a highly fragmented rainforest
Cited by: 3
Author(s): Pilar Suárez-Montes, Mariana Chávez‐Pesqueira, Juan Núñez‐Farfán
Software Mentions: 3
Published: almost 8 years ago
10.1002/ece3.1261
4P: fast computing of population genetics statistics from large DNA polymorphism panels
Cited by: 34
Author(s): Andrea Benazzo, Alex Panziera, Giorgio Bertorelle
Software Mentions: 3
Published: almost 10 years ago
10.1111/eva.12704
Population history provides foundational knowledge for utilizing and developing native plant restoration materials
Cited by: 26
Author(s): Rob Massatti, Holly R. Prendeville, Steve Larson, Bryce A. Richardson, Blair L. Waldron, Francis F. Kilkenny
Software Mentions: 3
Published: about 6 years ago
10.1186/s12870-018-1576-y
SNP genotyping elucidates the genetic diversity of Magna Graecia grapevine germplasm and its historical origin and dissemination
Cited by: 35
Author(s): Gabriella De Lorenzis, Francesco Mercati, Carlo Bergamini, Maria Francesca Cardone, Antonio Lupini, Antonio Mauceri, Anna Caputo, Loredana Abbate, M Barbagallo, Donato Antonacci, Francesco Sunseri, Lucio Brancadoro
Software Mentions: 3
Published: almost 6 years ago
10.1111/eva.12446
Managing cryptic biodiversity: Fine‐scale intralacustrine speciation along a benthic gradient in Alpine whitefish (<i>Coregonus</i> spp.)
Cited by: 32
Author(s): Alan G. Hudson, Baenz Lundsgaard-Hansen, Kay Lucek, Pascal Vonlanthen, Ole Seehausen
Software Mentions: 3
Published: almost 8 years ago
10.7717/peerj.6115
The role of Central American barriers in shaping the evolutionary history of the northernmost glassfrog,<i>Hyalinobatrachium fleischmanni</i>(Anura: Centrolenidae)
Cited by: 19
Author(s): Ángela María Mendoza, Wilmar Bolívar-García, Ella Vázquez‐Domínguez, Roberto Ibáñez, Gabriela Parra Olea
Software Mentions: 3
Published: almost 6 years ago
10.1111/eva.12874
Genetic evidence of a northward range expansion in the eastern Bering Sea stock of Pacific cod
Cited by: 51
Author(s): Ingrid Spies, Kristen Gruenthal, Daniel P. Drinan, Anne B. Hollowed, Duane E. Stevenson, Carolyn Tarpey, Lorenz Hauser
Software Mentions: 3
Published: about 5 years ago
10.1002/ece3.4479
Specific <scp>MHC</scp> class I supertype associated with parasite infection and color morph in a wild lizard population
Cited by: 13
Author(s): Jessica Hacking, Devi Stuart‐Fox, Stephanie S. Godfrey, Michael G. Gardner
Software Mentions: 3
Published: about 6 years ago
10.7717/peerj.1759
Genetic structure of the threatened West-Pannonian population of Great Bustard (<i>Otis tarda</i>)
Cited by: 3
Author(s): José Luis Hórreo, Rainer Raab, Péter Spakovszky, Juan Carlos Alonso
Software Mentions: 3
Published: almost 9 years ago
10.7717/peerj.11462
The transition to agricultural cultivation of neo-crops may fail to account for wild genetic diversity patterns: insights from the Cape Floristic Region
Cited by: 0
Author(s): Nicholas C. Galuszynski
Software Mentions: 3
Published: over 3 years ago