Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: adegenet

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/adegenet

Exploratory Analysis of Genetic and Genomic Data
43 versions
Latest release: almost 2 years ago
26 dependent packages
7,146 downloads last month

Papers Mentioning adegenet 767

10.1186/s12864-020-07015-w
Tracing key genes associated with the Pinctada margaritifera albino phenotype from juvenile to cultured pearl harvest stages using multiple whole transcriptome sequencing
Cited by: 5
Author(s): Pauline Auffret, Jérémy Le Luyer, Manaarii Sham Koua, Virgile Quillien, Chin‐Long Ky
Software Mentions: 6
Published: about 4 years ago
10.1002/ece3.6537
Species diversity and phylogeography of<i>Cornus kousa</i>(Asian dogwood) captured by genomic and genic microsatellites
Cited by: 3
Author(s): Marcin Nowicki, Logan C. Houston, Sarah L. Boggess, Anthony S. Aiello, Miriam Payá‐Milans, Margaret Staton, Mitsuhiro Hayashida, Masahiro Yamanaka, Shigetoshi Eda, Robert N. Trigiano
Software Mentions: 6
Published: over 4 years ago
10.1186/s13071-020-3924-7
Evidence for family-level variation of phenotypic traits in response to temperature of Brazilian Nyssorhynchus darlingi
Cited by: 2
Author(s): Virginia M. Chu, Maria Anice Mureb Sallum, Timothy E. Moore, Kevin J. Emerson, Carl D. Schlichting, Jan E. Conn
Software Mentions: 6
Published: almost 5 years ago
10.1371/journal.pntd.0008266
Impacts of host gender on Schistosoma mansoni risk in rural Uganda—A mixed-methods approach
Cited by: 14
Author(s): Suzan Trienekens, Christina L. Faust, Keila Meginnis, Lucy Pickering, Olivia Ericsson, Andrina Nankasi, Moses Arinaitwe, Edridah M. Tukahebwa, Poppy H. L. Lamberton
Software Mentions: 6
Published: over 4 years ago
10.1002/ece3.6676
Hare's affairs: Lessons learnt from a noninvasive genetic monitoring for tracking mountain hare individuals
Cited by: 9
Author(s): Laura Schenker, Kurt Bollmann, Maik Rehnus, Sabine Brodbeck, Félix Gugerli
Software Mentions: 6
Published: about 4 years ago
10.1371/journal.pone.0243420
Characterizing the genetic diversity of the Andean blueberry (Vaccinium floribundum Kunth.) across the Ecuadorian Highlands
Cited by: 9
Author(s): Pamela Vega-Polo, María Mercedes Cobo, Andrea Argudo, Bernardo Gutiérrez, Jennifer K. Rowntree, María de Lourdes Torres
Software Mentions: 6
Published: almost 4 years ago
10.1093/gbe/evx067
Genomic Differentiation and Demographic Histories of Atlantic and Indo-Pacific Yellowfin Tuna (Thunnus albacares) Populations
Cited by: 37
Author(s): Julia Maria Isis Barth, Malte Damerau, Michael Matschiner, Sissel Jentoft, Reinhold Hanel
Software Mentions: 6
Published: over 7 years ago
10.1371/journal.pntd.0008962
Population genomics of Plasmodium vivax in Panama to assess the risk of case importation on malaria elimination
Cited by: 14
Author(s): Lucas E. Buyon, Ana María Santamaría, Angela M. Early, Mario Quijada, Itza Barahona, José Lasso, Mario Ávila, Sarah K. Volkman, Matthias Marti, Daniel E. Neafsey, Nicanor Obaldía
Software Mentions: 6
Published: almost 4 years ago
10.1002/ece3.6378
Long‐lived marine species may be resilient to environmental variability through a temporal portfolio effect
Cited by: 1
Author(s): Jacek Maselko, Kimberly R. Andrews, Paul A. Hohenlohe
Software Mentions: 6
Published: over 4 years ago
10.3390/genes11111387
GWAS Based on RNA-Seq SNPs and High-Throughput Phenotyping Combined with Climatic Data Highlights the Reservoir of Valuable Genetic Diversity in Regional Tomato Landraces
Cited by: 10
Author(s): Mónica Rodríguez, Alessandro Scintu, Chiara M. Posadinu, Youqiang Xu, Cuong Nguyen, Honghe Sun, Elena Bitocchi, Elisa Bellucci, Roberto Papa, Zhangjun Fei, James J. Giovannoni, Domenico Rau, Giovanna Attene
Software Mentions: 6
Published: almost 4 years ago
10.1111/mpp.12819
Population genomics of an outbreak of the potato late blight pathogen,<i>Phytophthora infestans</i>, reveals both clonality and high genotypic diversity
Cited by: 14
Author(s): Sundy Maurice, Melanie Montes, Bent Nielsen, Lars Bødker, Michael D. Martin, Carina Grøntved Jønck, Rasmus Kjøller, Søren Rosendahl
Software Mentions: 6
Published: over 5 years ago
10.1111/eva.12755
Into the weeds: Matching importation history to genetic consequences and pathways in two widely used biological control agents
Cited by: 16
Author(s): Julie V. Hopper, Kent F. McCue, Paul D. Pratt, Pierre Duchesne, Edwin D. Grosholz, Ruth A. Hufbauer
Software Mentions: 6
Published: almost 6 years ago
10.1002/ece3.7099
Divergent lineages in a semi‐arid mallee species, <i>Eucalyptus behriana</i>, correspond to a major geographic break in southeastern Australia
Cited by: 7
Author(s): Patrick S. Fahey, Rachael M. Fowler, Todd G. B. McLay, Frank Udovicic, David J. Cantrill, Michael J. Bayly
Software Mentions: 5
Published: almost 4 years ago
10.1371/journal.pone.0243310
Genetic and morphometric variability between populations of Betula ×oycoviensis from Poland and Czechia: A revised view of the taxonomic treatment of the Ojców birch
Cited by: 2
Author(s): Rostislav Linda, I. Kuneš, Martin Baláš
Software Mentions: 5
Published: almost 4 years ago
10.3389/fpls.2021.675859
Pre-emptive Breeding Against Karnal Bunt Infection in Common Wheat: Combining Genomic and Agronomic Information to Identify Suitable Parents
Cited by: 3
Author(s): Livinus Emebiri, Shane Hildebrand, Mui-Keng Tan, Philomin Juliana, Pawan Kumar Singh, Guillermo Fuentes-Dávila, Ravi P. Singh
Software Mentions: 5
Published: over 3 years ago
10.3389/fpls.2021.626405
By Animal, Water, or Wind: Can Dispersal Mode Predict Genetic Connectivity in Riverine Plant Species?
Cited by: 14
Author(s): Alison G. Nazareno, L. Lacey Knowles, Christopher W. Dick, Lúcia Garcez Lohmann
Software Mentions: 5
Published: almost 4 years ago
10.3389/fpls.2018.01698
Geography and Environment Shape Landscape Genetics of Mediterranean Alpine Species Silene ciliata Poiret. (Caryophyllaceae)
Cited by: 15
Author(s): Javier Morente‐López, Cristina García, Carlos Lara‐Romero, Alfredo García‐Fernández, David Draper, J. M. Iriondo
Software Mentions: 5
Published: almost 6 years ago
10.1093/molbev/msw124
Mapping Phylogenetic Trees to Reveal Distinct Patterns of Evolution
Cited by: 107
Author(s): Michaela Kendall, Caroline Colijn
Software Mentions: 5
Published: over 8 years ago
10.3389/fgene.2020.00870
Evaluation of the Minimum Sampling Design for Population Genomic and Microsatellite Studies: An Analysis Based on Wild Maize
Cited by: 13
Author(s): Jonás A. Aguirre‐Liguori, Javier Alejandro Luna-Sanchez, Jaime Gasca-Pineda, Luis E. Eguiarte
Software Mentions: 5
Published: about 4 years ago
10.1186/1471-2148-13-233
True lemurs…true species - species delimitation using multiple data sources in the brown lemur complex
Cited by: 31
Author(s): Matthias Markolf, Hanitriniaina Rakotonirina, Claudia Fichtel, Phillip von Grumbkow, Markus Brameier, Peter M. Kappeler
Software Mentions: 5
Published: almost 12 years ago
10.1002/ece3.7212
Genetic studies of various<i>Prosopis</i>species (Leguminosae, Section<i>Algarobia</i>) co‐occurring in oases of the Atacama Desert (northern Chile)
Cited by: 2
Author(s): Cecilia Bessega, Carolina Luciana Pometti, Renée H. Fortunato, Francisca Greene, Calógero M. Santoro, Virginia McRostie
Software Mentions: 5
Published: almost 4 years ago
10.1186/s12862-021-01856-z
Positive selection on the MHC class II DLA-DQA1 gene in golden jackals (Canis aureus) from their recent expansion range in Europe and its effect on their body mass index
Cited by: 6
Author(s): Milomir Stefanović, Duško Ćirović, Neda Bogdanović, Felix Knauer, Miklós Heltai, László Szabó, József Lanszki, Chavdar Zhelev, Helmut Schaschl, Franz Suchentrunk
Software Mentions: 5
Published: over 3 years ago
10.3389/fgene.2019.00597
Single Nucleotide Polymorphisms (SNPs) Reveal Sibship Among Founders of a Bangladeshi Rohu (Labeo rohita) Breeding Population
Cited by: 10
Author(s): Matthew Hamilton, Wagdy Mekkawy, Andrzej Kilian, John A. H. Benzie
Software Mentions: 5
Published: over 5 years ago
10.1002/ece3.6456
Human‐geographic effects on variations in the population genetics of<i>Sinotaia quadrata</i>(Gastropoda: Viviparidae) that historically migrated from continental East Asia to Japan
Cited by: 6
Author(s): Bin Ye, Takahito Saito, Toshio Hirano, Zhengzhong Dong, Van Tu, Satoshi Chiba
Software Mentions: 5
Published: over 4 years ago
10.3390/ani10071164
Reproduction Indicators Related to Litter Size and Reproduction Cycle Length Among Sows of Breeds Considered Maternal and Paternal Components Kept on Medium-Size Farms
Cited by: 8
Author(s): Błażej Nowak, Anna Mucha, Magdalena Moska, Wojciech Kruszyński
Software Mentions: 5
Published: over 4 years ago
10.1002/ece3.4333
Island biogeography and ecological modeling of the amblypygid<i>Phrynus marginemaculatus</i>in the Florida Keys archipelago
Cited by: 4
Author(s): Kenneth James Chapin, Daniel E. Winkler, Patrick Wiencek, Ingi Agnarsson
Software Mentions: 5
Published: over 6 years ago
10.1111/eva.13219
Whole genome genotyping reveals discrete genetic diversity in north‐east Atlantic maerl beds
Cited by: 3
Author(s): Tom L. Jenkins, Marie‐Laure Guillemin, Cornelia Simon-Nutbrown, Heidi L. Burdett, Jamie R. Stevens, Viviana Peña
Software Mentions: 5
Published: over 3 years ago
10.3390/plants10040752
Genetic Diversity and Population Structure of Potato Germplasm in RDA-Genebank: Utilization for Breeding and Conservation
Cited by: 9
Author(s): Kyung-Jun Lee, Sebastin Raveendar, Gyu‐Taek Cho, Mun-Sup Yoon, Gi-An Lee, Do-Yoon Hyun
Software Mentions: 5
Published: over 3 years ago
10.1111/eva.12647
Population genomics of the introduced and cultivated Pacific kelp<i>Undaria pinnatifida</i>: Marinas-not farms-drive regional connectivity and establishment in natural rocky reefs
Cited by: 43
Author(s): Jaromir Guzinski, Marion Ballenghien, Claire Daguin‐Thiébaut, Laurent Lévêque, Frédérique Viard
Software Mentions: 5
Published: over 6 years ago
10.1111/eva.12499
Strong population structure deduced from genetics, otolith chemistry and parasite abundances explains vulnerability to localized fishery collapse in a large Sciaenid fish,<i>Protonibea diacanthus</i>
Cited by: 31
Author(s): Laura Taillebois, Diane P. Barton, David A. Crook, Thor Saunders, Jonathan Taylor, Mark Hearnden, Richard Saunders, Stephen J. Newman, Michael J. Travers, David J. Welch, Alan Greig, Christine L. Dudgeon, Safia Maher, Jennifer R. Ovenden
Software Mentions: 5
Published: over 7 years ago
10.1128/mSphere.00738-20
Genomic Epidemiology and Evolution of <i>Escherichia coli</i> in Wild Animals in Mexico
Cited by: 14
Author(s): Robert S. Murphy, Martin Palm, Ville Mustonen, Jonas Warringer, Anne Farewell, Leopold Parts, Danesh Moradigaravand
Software Mentions: 5
Published: over 3 years ago
10.1371/journal.pone.0162377
Genetic Diversity and Population Structure of Mesoamerican Jaguars (Panthera onca): Implications for Conservation and Management
Cited by: 42
Author(s): Claudia Wultsch, Anthony Caragiulo, Isabela Dias-Freedman, Howard Quigley, Salisa Rabinowitz, George Amato
Software Mentions: 5
Published: about 8 years ago
10.1111/eva.12357
Population genomics of the Anthropocene: urbanization is negatively associated with genome‐wide variation in white‐footed mouse populations
Cited by: 97
Author(s): Jason Munshi‐South, Christine P. Zolnik, S. E. Harris
Software Mentions: 5
Published: almost 9 years ago
10.1371/journal.pone.0166969
Hybrid Origins of Citrus Varieties Inferred from DNA Marker Analysis of Nuclear and Organelle Genomes
Cited by: 72
Author(s): Tokurou Shimizu, Akira Kitajima, Kenichi Nonaka, Terutaka Yoshioka, Satoshi Ohta, Shingo Goto, Atsushi Toyoda, Asao Fujiyama, Takako Mochizuki, Hideki Nagasaki, Eli Kaminuma, Yasukazu Nakamura
Software Mentions: 5
Published: almost 8 years ago
10.1038/s41598-021-91962-1
OpiumPlex is a novel microsatellite system for profiling opium poppy (Papaver somniferum L.)
Cited by: 4
Author(s): Jakub Vašek, Daniela Čílová, Martina Melounová, Pavel Svoboda, Kamila Zdeňková, Eliška Čermáková, Jaroslava Ovesná
Software Mentions: 5
Published: over 3 years ago
10.1111/eva.12905
Divergent northern and southern populations and demographic history of the pearl oyster in the western Pacific revealed with genomic SNPs
Cited by: 21
Author(s): Takeshi Takeuchi, Tetsuji Masaoka, Hideo Aoki, Ryo Koyanagi, Manabu Fujie, Noriyuki Satoh
Software Mentions: 5
Published: almost 5 years ago
10.1038/s41598-020-61192-y
Diet influences the functions of the human intestinal microbiome
Cited by: 104
Author(s): Maria De Angelis, Ilario Ferrocino, Francesco Maria Calabrese, Francesca De Filippis, Noemi Cavallo, Sonya Siragusa, Simone Rampelli, Raffaella Di Cagno, Kalliopi Rantsiou, Lucia Vannini, Nicoletta Pellegrini, Camilla Lazzi, Silvia Turroni, Nicola Lorusso, Mario Ventura, Marcello Chieppa, Erasmo Neviani, Patrizia Brigidi, Paul W. O’Toole, Marco Gobbetti, Luca Simone Cocolin
Software Mentions: 5
Published: over 4 years ago
10.1038/s41598-020-63919-3
Increased Prediction Accuracy Using Combined Genomic Information and Physiological Traits in A Soft Wheat Panel Evaluated in Multi-Environments
Cited by: 12
Author(s): Jia Guo, Sumit Pradhan, Dipendra Shahi, Jahangir Khan, Jordan C. McBreen, Guihua Bai, J. Paul Murphy, Ali Babar
Software Mentions: 5
Published: over 4 years ago
10.1111/eva.13030
Contrasted patterns of local adaptation to climate change across the range of an evergreen oak, <i>Quercus aquifolioides</i>
Cited by: 25
Author(s): Fang Du, Tianrui Wang, Yuyao Wang, S. Ueno, Guillaume de Lafontaine
Software Mentions: 5
Published: over 4 years ago
10.1111/eva.12766
Population structure, genetic connectivity, and adaptation in the Olympia oyster ( <i>Ostrea lurida</i> ) along the west coast of North America
Cited by: 35
Author(s): Katherine Silliman
Software Mentions: 5
Published: over 5 years ago
10.1111/eva.12699
Weed evolution: Genetic differentiation among wild, weedy, and crop radish
Cited by: 16
Author(s): Amanda Charbonneau, David C. Tack, Allison Lale, J. E. Goldston, Mackenzie Caple, Emma Conner, Oz Barazani, Jotham Ziffer-Berger, Ian Dworkin, Jeffrey K. Conner
Software Mentions: 5
Published: about 6 years ago
10.1038/s41598-021-97556-1
De novo transcriptome assembly, polymorphic SSR markers development and population genetics analyses for southern corn rust (Puccinia polysora)
Cited by: 3
Author(s): Qiuyu Sun, Jie Liu, Keyu Zhang, Chong Huang, Leifu Li, Jiayu Dong, Yong Luo, Zhanhong Ma
Software Mentions: 5
Published: about 3 years ago
10.1371/journal.pone.0231809
Genetic and demographic vulnerability of adder populations: Results of a genetic study in mainland Britain
Cited by: 3
Author(s): Sarah E. Ball, Nigel Hand, Faye Willman, Chris Durrant, Tobias Uller, Katja Claus, Joachim Mergeay, Dirk Bauwens, Trenton W. J. Garner
Software Mentions: 5
Published: over 4 years ago
10.1111/eva.12794
Landscape genomics to the rescue of a tropical bee threatened by habitat loss and climate change
Cited by: 37
Author(s): Rodolfo Jaffé, Jamille Costa Veiga, Nathaniel S. Pope, Éder Cristian Malta de Lanes, Carolina da Silva Carvalho, Ronnie Alves, Sónia C. S. Andrade, Maria Cristina Arias, Vanessa Bonatti, Alysson Massote Carvalho, Marina S. de Castro, Felipe Andrés León Contrera, Tiago Maurício Francoy, Breno Magalhães Freitas, Tereza Cristina Giannini, Michael Hrncir, Celso Feitosa Martins, Guilherme de Oliveira, Antônio Mauro Saraiva, Bruno de Almeida Souza, Vera Lúcia Imperatriz-Fonseca
Software Mentions: 5
Published: over 5 years ago
10.1002/ece3.5420
Population genetic structure and connectivity of the seagrass <i>Thalassia hemprichii</i> in the Western Indian Ocean is influenced by predominant ocean currents
Cited by: 24
Author(s): Marlene Jahnke, Martin Gullström, Josefine Larsson, Maria E. Asplund, Said S. Mgeleka, Mathew Ogalo Silas, Arielle I. Hoamby, Jamal Mahafina, Lina Mtwana Nordlund
Software Mentions: 5
Published: over 5 years ago
10.7717/peerj.7484
Phylogenomic analyses confirm a novel invasive North American<i>Corbicula</i>(Bivalvia: Cyrenidae) lineage
Cited by: 20
Author(s): Amanda E. Haponski, Diarmaid Ó Foighil
Software Mentions: 5
Published: over 5 years ago
10.1098/rsos.171532
Stable genetic structure and connectivity in pollution-adapted and nearby pollution-sensitive populations of<i>Fundulus heteroclitus</i>
Cited by: 1
Author(s): Joaquin C. B. Nunez, Leann M. Biancani, Patrick A. Flight, Diane Nacci, David M. Rand, Douglas L. Crawford, Marjorie F. Oleksiak
Software Mentions: 5
Published: over 6 years ago
10.1186/s12864-021-07906-6
Genome analyses of four Wolbachia strains and associated mitochondria of Rhagoletis cerasi expose cumulative modularity of cytoplasmic incompatibility factors and cytoplasmic hitchhiking across host populations
Cited by: 2
Author(s): Jennifer L. Morrow, Markus Riegler
Software Mentions: 5
Published: over 3 years ago
10.1098/rsos.170057
Absence of population structure across elevational gradients despite large phenotypic variation in mountain chickadees (<i>Poecile gambeli</i>)
Cited by: 20
Author(s): Carrie L. Branch, Joshua P. Jahner, Dovid Y. Kozlovsky, Thomas L. Parchman, Vladimir V. Pravosudov
Software Mentions: 5
Published: over 7 years ago
10.1371/journal.pone.0192165
Genomic diversity is similar between Atlantic Forest restorations and natural remnants for the native tree Casearia sylvestris Sw.
Cited by: 10
Author(s): João Paulo Gomes Viana, Marcos Vinícius Bohrer Monteiro Siqueira, Fabiano Lucas Araujo, Carolina Grando, Patrícia Sanae Sujii, Ellida de Aguiar Silvestre, Mariana Novello, José Baldin Pinheiro, Marcelo Mattos Cavallari, Pedro Henrique Santin Brancalion, Ricardo Ribeiro Rodrigues, Anete Pereira de Souza, Julian M. Catchen, Maria Imaculada Zucchi
Software Mentions: 5
Published: over 6 years ago
10.1002/ece3.3583
Development of a genotype‐by‐sequencing immunogenetic assay as exemplified by screening for variation in red fox with and without endemic rabies exposure
Cited by: 5
Author(s): Michael E. Donaldson, Yessica Rico, Karsten Hueffer, Halie M. Rando, Anna V. Kukekova, Christopher J. Kyle
Software Mentions: 5
Published: almost 7 years ago
10.1186/s12864-019-5806-y
From reference genomes to population genomics: comparing three reference-aligned reduced-representation sequencing pipelines in two wildlife species
Cited by: 44
Author(s): Belinda Wright, Katherine A. Farquharson, Elspeth A. McLennan, Katherine Belov, Carolyn J. Hogg, Catherine E. Grueber
Software Mentions: 5
Published: over 5 years ago
10.3390/v13061172
Comprehensive Evolutionary Analysis of Complete Epstein–Barr Virus Genomes from Argentina and Other Geographies
Cited by: 7
Author(s): Ana Catalina Blazquez, Ariel Berenstein, Carolina Torres, Agustín Izquierdo, Carol Lezama, Guillermo Moscatelli, Elena Noemí de Matteo, Mario Alejandro Lorenzetti, María Victoria Preciado
Software Mentions: 5
Published: over 3 years ago
10.1371/journal.pntd.0007876
Microsatellite analysis reveals connectivity among geographically distant transmission zones of Plasmodium vivax in the Peruvian Amazon: A critical barrier to regional malaria elimination
Cited by: 11
Author(s): Paulo Manrique, Julio Miranda-Alban, Jhonatan Alarcon-Baldeon, Roberson Ramirez, Gabriel Carrasco-Escobar, Henry Herrera, Mitchel Guzmán-Guzmán, Ángel Rosas Aguirre, Alejandro Llanos‐Cuentas, Joseph M. Vinetz, Ananías A. Escalante, Dionicia Gamboa
Software Mentions: 5
Published: about 5 years ago
10.1371/journal.pone.0236717
Genetic diversity, relatedness and inbreeding of ranched and fragmented Cape buffalo populations in southern Africa
Cited by: 6
Author(s): Deon de Jager, Cindy Kim Harper, Paulette Bloomer
Software Mentions: 5
Published: over 4 years ago
10.1002/ece3.6195
Major inconsistencies of inferred population genetic structure estimated in a large set of domestic horse breeds using microsatellites
Cited by: 12
Author(s): Stephan M. Funk, Sonya Guedaoura, Rytis Juras, Absul Raziq, Faouzi Landolsi, Cristina Luı́s, Amparo Martínez Martínez, Abubakar Musa Mayaki, Fernando Mujica, María do Mar Oom, Lahoussine Ouragh, Yves-Marie Stranger, J. L. Vega‐Pla, E. Gus Cothran
Software Mentions: 5
Published: over 4 years ago
10.1186/s12864-015-1540-2
Gene expression associated with white syndromes in a reef building coral, Acropora hyacinthus
Cited by: 185
Author(s): Rachel M. Wright, Galina V. Aglyamova, Eli Meyer, Mikhail V. Matz
Software Mentions: 5
Published: over 9 years ago
10.1002/ece3.1479
Landscape characteristics influencing the genetic structure of greater sage‐grouse within the stronghold of their range: a holistic modeling approach
Cited by: 26
Author(s): Jeffrey R. Row, Sara J. Oyler‐McCance, Jennifer A. Fike, Michael S. O’Donnell, Kevin E. Doherty, Cameron L. Aldridge, Zachary H. Bowen, Bradley C. Fedy
Software Mentions: 5
Published: over 9 years ago
10.1038/s41598-019-45950-1
The Interplay between Incipient Species and Social Polymorphism in the Desert Ant Cataglyphis
Cited by: 9
Author(s): Tali Reiner Brodetzki, Shani Inbar, Pnina Cohen, Serge Aron, Eyal Privman, Abraham Hefetz
Software Mentions: 5
Published: over 5 years ago
10.3389/fpls.2021.618245
Analysis of Genetic Diversity and Population Structure of Orobanche foetida Populations From Tunisia Using RADseq
Cited by: 6
Author(s): Amal Boukteb, Shota Sakaguchi, Yasunori Ichihashi, Mohamed Kharrat, Atsushi J. Nagano, Ken Shirasu, Mariem Bouhadida
Software Mentions: 4
Published: over 3 years ago
10.1371/journal.pone.0211285
Taxonomical over splitting in the Rhodnius prolixus (Insecta: Hemiptera: Reduviidae) clade: Are R. taquarussuensis (da Rosa et al., 2017) and R. neglectus (Lent, 1954) the same species?
Cited by: 44
Author(s): Juliana Damieli Nascimento, João Aristeu da Rosa, Fabian C. Salgado-Roa, Carolina Hernández, Carolina Pardo‐Díaz, Kaio Cesar Chaboli Alevi, Amanda Ravazi, Jader de Oliveira, Maria Tercília Vilela de Azeredo-Oliveira, Camilo Salazar, Juan David Ramírez
Software Mentions: 4
Published: almost 6 years ago
10.3389/fpls.2021.730258
One Step Away From Extinction: A Population Genomic Analysis of A Narrow Endemic, Tropical Plant Species
Cited by: 4
Author(s): Thais M. Teixeira, Alison G. Nazareno
Software Mentions: 4
Published: about 3 years ago
10.1093/molbev/msab096
Novelty and Convergence in Adaptation to Whole Genome Duplication
Cited by: 20
Author(s): Magdalena Bohutínská, Mark Alston, Patrick J. Monnahan, Terezie Mandáková, Sian Bray, Pirita Paajanen, Filip Kolář, Levi Yant
Software Mentions: 4
Published: over 3 years ago
10.1002/ece3.1305
Challenges in analysis and interpretation of microsatellite data for population genetic studies
Cited by: 269
Author(s): Alexander I. Putman, Ignazio Carbone
Software Mentions: 4
Published: about 10 years ago
10.3389/fpls.2017.01860
Global DNA Methylation Patterns Can Play a Role in Defining Terroir in Grapevine (Vitis vinifera cv. Shiraz)
Cited by: 46
Author(s): Huahan Xie, Moumouni Konaté, Na Sai, Kiflu Tesfamicael, Timothy R. Cavagnaro, Matthew Gilliham, James Breen, Andrew Metcalfe, J. Stephen, Roberta De Bei, Cassandra Collins, Carlos M. Rodríguez López
Software Mentions: 4
Published: about 7 years ago
10.1093/molbev/msab141
Rapid Parallel Adaptation to Anthropogenic Heavy Metal Pollution
Cited by: 14
Author(s): Alexander S. T. Papadopulos, Andrew J. Helmstetter, Owen G. Osborne, Aaron A. Comeault, Daniel P. Wood, Edward A. Straw, Laurence Mason, Michael F. Fay, Joe Parker, Luke T. Dunning, Andrew Foote, Rhian J. Smith, Jackie Lighten
Software Mentions: 4
Published: over 3 years ago
10.1093/molbev/msy023
RADpainter and fineRADstructure: Population Inference from RADseq Data
Cited by: 234
Author(s): Milan Malinsky, Emiliano Trucchi, Daniel J. Lawson, Daniel Falush
Software Mentions: 4
Published: almost 7 years ago
10.3390/ani11092651
SNPs in Sheep: Characterization of Lithuanian Sheep Populations
Cited by: 0
Author(s): Rūta Šveistienė, Miika Tapio
Software Mentions: 4
Published: about 3 years ago
10.1002/ece3.4646
Killer whales (<i>Orcinus orca</i>) in Iceland show weak genetic structure among diverse isotopic signatures and observed movement patterns
Cited by: 6
Author(s): Sara B. Tavares, Filipa I. P. Samarra, Sónia Pascoal, Jeff A. Graves, Patrick J. O. Miller
Software Mentions: 4
Published: about 6 years ago
10.1371/journal.pone.0249176
The role of a mechanistic host in maintaining arctic rabies variant distributions: Assessment of functional genetic diversity in Alaskan red fox (Vulpes vulpes)
Cited by: 0
Author(s): Tristan M. Baecklund, Jaycee Morrison, Michael E. Donaldson, Karsten Hueffer, Christopher J. Kyle
Software Mentions: 4
Published: over 3 years ago
10.1186/1471-2156-11-94
Discriminant analysis of principal components: a new method for the analysis of genetically structured populations
Cited by: 3,502
Author(s): Thibaut Jombart, Sébastien Devillard, François Balloux
Software Mentions: 4
Published: almost 15 years ago
10.1002/ece3.5950
Continent‐wide population genomic structure and phylogeography of North America’s most destructive conifer defoliator, the spruce budworm (<i>Choristoneura fumiferana</i>)
Cited by: 19
Author(s): Lisa M. Lumley, Esther Pouliot, Jérôme Laroche, Brian Boyle, Bryan M. T. Brunet, Roger C. Levesque, Felix A. H. Sperling, Michel Cusson
Software Mentions: 4
Published: almost 5 years ago
10.3390/microorganisms9030562
Large-Scale Genome Scanning within Exonic Regions Revealed the Contributions of Selective Sweep Prone Genes to Host Divergence and Adaptation in Magnaporthe oryzae Species Complex
Cited by: 3
Author(s): Guohua Duan, Jiandong Bao, Xiaomin Chen, Jiahui Xie, Yuchan Liu, Huiquan Chen, Huakun Zheng, Wei Tang, Zonghua Wang
Software Mentions: 4
Published: over 3 years ago
10.3390/microorganisms7100430
Distribution of Foliicolous Lichen Strigula and Genetic Structure of S. multiformis on Jeju Island, South Korea
Cited by: 2
Author(s): Seung‐Yoon Oh, Jung-Jae Woo, Jae‐Seoun Hur
Software Mentions: 4
Published: about 5 years ago
10.1002/ece3.4610
Genetic diversity and differentiation among <i>Prosopis alba</i> (Leguminosae) populations from dry valleys of Bolivia with different levels of human disturbance and altitude
Cited by: 5
Author(s): Cecilia Bessega, Carolina Luciana Pometti, Ramiro Pablo López, Daniel M. Larrea‐Alcázar, Renée H. Fortunato, Beatriz Ofelia Saidman, Juan C. Vilardi
Software Mentions: 4
Published: about 6 years ago
10.3389/fgene.2019.01035
Population Genomics of the Neotropical Brown Stink Bug, Euschistus heros: The Most Important Emerging Insect Pest to Soybean in Brazil
Cited by: 15
Author(s): Maria Imaculada Zucchi, Erick M. G. Cordeiro, Weijie Xing, Letícia Marise Lamana, Patrick J. Brown, Shilpa Manjunatha, João Paulo Gomes Viana, Celso Omoto, José Baldin Pinheiro, Steven J. Clough
Software Mentions: 4
Published: about 5 years ago
10.3389/fgene.2015.00208
Novel R tools for analysis of genome-wide population genetic data with emphasis on clonality
Cited by: 585
Author(s): Zhian N. Kamvar, Jonah C. Brooks, Niklaus J. Grünwald
Software Mentions: 4
Published: over 9 years ago
10.3389/fmicb.2020.01077
The Gene Flow Direction of Geographically Distinct Phytophthora infestans Populations in China Corresponds With the Route of Seed Potato Exchange
Cited by: 6
Author(s): Fangluan Gao, Changsheng Chen, Benjin Li, Qiyong Weng, Qinghe Chen
Software Mentions: 4
Published: over 4 years ago
10.1002/ece3.6306
Small coastal streams—Critical reservoirs of genetic diversity for trout (<i>Salmo trutta</i>L.) in the face of increasing anthropogenic stressors
Cited by: 1
Author(s): R. Andrew King, Bruce Stockley, Jamie R. Stevens
Software Mentions: 4
Published: over 4 years ago
10.1002/ece3.1695
Genome‐wide analyses suggest parallel selection for universal traits may eclipse local environmental selection in a highly mobile carnivore
Cited by: 19
Author(s): Astrid Vik Strønen, Bogumiła Jędrzejewska, Cino Pertoldi, Ditte Demontis, Ettore Randi, Magdalena Niedziałkowska, Tomasz Borowik, Vadim E. Sidorovich, Josip Kusak, Ilpo Kojola, Alexandros A. Karamanlidis, Jurijs Ozoliņš, Vitalii Dumenko, Sylwia D. Czarnomska
Software Mentions: 4
Published: about 9 years ago
10.1371/journal.pgen.1004459
Activation of the Arabidopsis thaliana Immune System by Combinations of Common ACD6 Alleles
Cited by: 49
Author(s): Marco Todesco, Sang‐Tae Kim, Eunyoung Chae, Kirsten Bomblies, Maricris Zaidem, Lisa M. Smith, Detlef Weigel, Roosa A. E. Laitinen
Software Mentions: 4
Published: over 10 years ago
10.1002/ece3.6404
“A cleaner break”: Genetic divergence between geographic groups and sympatric phenotypes revealed in ballan wrasse (<i>Labrus bergylta</i>)
Cited by: 9
Author(s): Gaute Wilhelmsen Seljestad, María Quintela, Ellika Faust, Kim Tallaksen Halvorsen, François Besnier, Eva Jansson, Geir Dahle, Halvor Knutsen, Carl André, Arild Folkvord, Kevin A. Glover
Software Mentions: 4
Published: over 4 years ago
10.1371/journal.pgen.1008680
Postglacial migration shaped the genomic diversity and global distribution of the wild ancestor of lager-brewing hybrids
Cited by: 24
Author(s): Quinn K. Langdon, David Peris, Juan Ignacio Eizaguirre, Dana A. Opulente, Kelly V. Buh, Kayla Sylvester, Martin Jarzyna, María Esther Rodríguez, Christian A. Lopes, Diego Libkind, Chris Todd Hittinger
Software Mentions: 4
Published: over 4 years ago
10.1002/ece3.5964
Opening the door to greater phylogeographic inference in Southeast Asia: Comparative genomic study of five codistributed rainforest bird species using target capture and historical DNA
Cited by: 9
Author(s): Haw Chuan Lim, Subir B. Shakya, Michael Harvey, Robert G. Moyle, Robert C. Fleischer, Michael J. Braun, Frederick H. Sheldon
Software Mentions: 4
Published: over 4 years ago
10.1002/ece3.929
Evidence for nonallopatric speciation among closely related sympatric<i><scp>H</scp>eliotropium</i>species in the<scp>A</scp>tacama<scp>D</scp>esert
Cited by: 10
Author(s): Federico Luebert, Pit Jacobs, Hartmut H. Hilger, Ludo A. H. Muller
Software Mentions: 4
Published: almost 11 years ago
10.1111/evo.13212
Polygamy slows down population divergence in shorebirds
Cited by: 32
Author(s): Josephine D’Urban Jackson, Natalie dos Remedios, Kathryn H. Maher, Sama Zefania, Susan M. Haig, Sara J. Oyler‐McCance, Donald Blomqvist, Terry Burke, Michael William Bruford, Tamás Székely, Clemens Küpper
Software Mentions: 4
Published: over 7 years ago
10.3389/fphys.2018.00825
Transcriptomics and Fitness Data Reveal Adaptive Plasticity of Thermal Tolerance in Oysters Inhabiting Different Tidal Zones
Cited by: 28
Author(s): Ao Li, Wei Wang, Kai Song, Guofan Zhang
Software Mentions: 4
Published: over 6 years ago
10.1002/ece3.5239
Multiple introductions and population structure during the rapid expansion of the invasive Sahara mustard (<i>Brassica tournefortii</i>)
Cited by: 12
Author(s): Daniel E. Winkler, Kenneth James Chapin, F. Ochsenbein, J. David Garmon, Brandon S. Gaut, Travis E. Huxman
Software Mentions: 4
Published: over 5 years ago
10.3390/plants8100377
Association Mapping Between Candidate Gene SNP and Production and Oil Quality Traits in Interspecific Oil Palm Hybrids
Cited by: 7
Author(s): Maider Astorkia, M. Rodríguez Hernández, Stéphanie Bocs, Emma Lopez de Armentia, Ana Herrán, Kevin Ponce, Olga León, Shone Morales, Nathalie Quezada, Francisco Orellana, Fahmi Wendra, Zulhermana Sembiring, Dwi Asmono, Enrique Ritter
Software Mentions: 4
Published: about 5 years ago
10.1111/eva.12979
Estimating the contribution of Greenland Halibut (<i>Reinhardtius hippoglossoides</i>) stocks to nurseries by means of genotyping‐by‐sequencing: Sex and time matter
Cited by: 16
Author(s): Emilie Carrier, Anne‐Laure Ferchaud, Éric Normandeau, Pascal Sirois, Louis Bernatchez
Software Mentions: 4
Published: over 4 years ago
10.3390/ani11092702
Trait Plasticity among Invasive Populations of the Ant Technomyrmex brunneus in Japan
Cited by: 3
Author(s): Diyona Putri, Masanori Yokozawa, Toshiro Yamanaka, Adam L. Cronin
Software Mentions: 4
Published: about 3 years ago
10.1002/ece3.7403
Genomic divergence in sympatry indicates strong reproductive barriers and cryptic species within <i>Eucalyptus salubris</i>
Cited by: 9
Author(s): Rachel M. Binks, Dorothy A. Steane, Margaret Byrne
Software Mentions: 4
Published: over 3 years ago
10.1002/ece3.7531
Population differences in Chinook salmon (<i>Oncorhynchus tshawytscha</i>) DNA methylation: Genetic drift and environmental factors
Cited by: 6
Author(s): Clare J. Venney, Ben J. G. Sutherland, Terry D. Beacham, Daniel D. Heath
Software Mentions: 4
Published: over 3 years ago
10.1016/j.xplc.2020.100105
Maintenance of Species Differences in Closely Related Tetraploid Parasitic Euphrasia (Orobanchaceae) on an Isolated Island
Cited by: 20
Author(s): Hannes Becher, Brown Mr, Gavin Powell, Chris Metherell, Nick Riddiford, Alex D. Twyford
Software Mentions: 4
Published: about 4 years ago
10.7717/peerj.5022
Relationship between<i>Acropora millepora</i>juvenile fluorescence and composition of newly established<i>Symbiodinium</i>assemblage
Cited by: 4
Author(s): Kate M. Quigley, Marie E. Strader, Mikhail V. Matz
Software Mentions: 4
Published: over 6 years ago
10.1186/s12870-021-02980-0
Genetic diversity structure of western-type carrots
Cited by: 7
Author(s): Katarzyna Stelmach, Alicja Macko-Podgórni, Charlotte J. Allender, Dariusz Grzebelus
Software Mentions: 4
Published: over 3 years ago
10.1002/ece3.7447
The impact of aquaculture on the genetics and distribution of the onuphid annelid <i>Diopatra biscayensis</i>
Cited by: 2
Author(s): Matthew P. Galaska, David S. Wethey, Andrés Arias, Stanislas F. Dubois, Kenneth M. Halanych, Sarah A. Woodin
Software Mentions: 4
Published: over 3 years ago
10.1111/eva.12660
Impact of supplementation on deleterious mutation distribution in an exploited salmonid
Cited by: 26
Author(s): Anne‐Laure Ferchaud, Martin Laporte, Charles Perrier, Louis Bernatchez
Software Mentions: 4
Published: over 6 years ago
10.1111/eva.12274
Morphological and genomic comparisons of<scp>H</scp>awaiian and<scp>J</scp>apanese<scp>B</scp>lack‐footed<scp>A</scp>lbatrosses (<i><scp>P</scp>hoebastria nigripes</i>) using double digest<scp>RAD</scp>seq: implications for conservation
Cited by: 39
Author(s): Elisa G. Dierickx, Allison J. Shultz, Fumio Sato, Takashi Hiraoka, Scott V. Edwards
Software Mentions: 4
Published: over 9 years ago
10.7717/peerj.5089
Whole-genome amplification in double-digest RADseq results in adequate libraries but fewer sequenced loci
Cited by: 31
Author(s): Bruno A. S. de Medeiros, Brian D. Farrell
Software Mentions: 4
Published: over 6 years ago