cran: ade4 | Projects | Ecosyste.ms: Papers

10.1186/1471-2164-11-379

Genomes of three tomato pathogens within the Ralstonia solanacearum species complex reveal significant evolutionary divergence
Cited by: 171
Author(s): Benoît Remenant, Bénédicte Coupat-Goutaland, Alice Guidot, Gilles Cellier, Emmanuel Wicker, Caitilyn Allen, Mark Fegan, Olivier Pruvost, Meyer Elbaz, Alexandra Calteau, Grégory Salvignol, Damien Mornico, Sophie Mangenot, Valérie Barbe, Claudine Médigue, Philippe Prior
Software Mentions: 3
Published: over 14 years ago

10.3389/fmicb.2021.676880

Outbreaks of Root Rot Disease in Different Aged American Ginseng Plants Are Associated With Field Microbial Dynamics
Cited by: 16
Author(s): Ji Li, Fahad Nasir, Lei Tian, Jingjing Chang, Yu Sun, Jianfeng Zhang, Xiujun Li, Chunjie Tian
Software Mentions: 3
Published: over 3 years ago

10.1186/s12931-018-0878-9

Smoking is associated with quantifiable differences in the human lung DNA virome and metabolome
Cited by: 26
Author(s): Ann C. Gregory, Matthew B. Sullivan, Leopoldo N. Segal, Brian C. Keller
Software Mentions: 3
Published: about 6 years ago

10.1371/journal.pone.0220327

Population genetic structure of Bemisia tabaci MED (Hemiptera: Aleyrodidae) in Korea
Cited by: 7
Author(s): Yujeong Park, Hye Yeong Nam, Sunghoon Baek, Si Hyeock Lee, Joon-Ho Lee
Software Mentions: 3
Published: over 5 years ago

10.3389/fmicb.2016.01917

Microbial Community of High Arsenic Groundwater in Agricultural Irrigation Area of Hetao Plain, Inner Mongolia
Cited by: 37
Author(s): Yanhong Wang, Ping Li, Zhou Jiang, Aki Sinkkonen, Wang Shi, Jin Tu, Dazhun Wei, Hailiang Dong, Yanxin Wang
Software Mentions: 3
Published: almost 8 years ago

10.1186/1471-2148-7-156

New analysis for consistency among markers in the study of genetic diversity: development and application to the description of bacterial diversity
Cited by: 12
Author(s): Sandrine Pavoine, Xavier Bailly
Software Mentions: 3
Published: almost 18 years ago

10.3389/fmicb.2016.00337

Composition and Interactions among Bacterial, Microeukaryotic, and T4-like Viral Assemblages in Lakes from Both Polar Zones
Cited by: 7
Author(s): Daniel Aguirre de Cárcer, Carlos Pedrós-Alió, David A. Pearce, Antonio Alcamı́
Software Mentions: 3
Published: over 8 years ago

10.1371/journal.pone.0248954

Study of the genetic and phenotypic variation among wild and cultivated clary sages provides interesting avenues for breeding programs of a perfume, medicinal and aromatic plant
Cited by: 4
Author(s): Camille Chalvin, Stéphanie Drevensek, Christel Chollet, Françoise Gilard, Edita M. Šolić, Michel Dron, Abdelhafid Bendahmane, Adnane Boualem, Amandine Cornille
Software Mentions: 3
Published: over 3 years ago

10.1098/rsos.160997

Detecting taxonomic and phylogenetic signals in equid cheek teeth: towards new palaeontological and archaeological proxies
Cited by: 55
Author(s): Thomas Cucchi, Azadeh Fatemeh Mohaseb Karimlu, Stéphane Peigné, Karyne Debue, Ludovic Orlando, Marjan Mashkour
Software Mentions: 3
Published: over 7 years ago

10.3389/fmicb.2015.00938

The large-scale distribution of ammonia oxidizers in paddy soils is driven by soil pH, geographic distance, and climatic factors
Cited by: 47
Author(s): Hang‐Wei Hu, Limei Zhang, Chaolei Yuan, Yong Zheng, Juntao Wang, Deli Chen
Software Mentions: 3
Published: about 9 years ago

10.3389/fmicb.2018.00864

Insight Into the Variation of Bacterial Structure in Atrazine-Contaminated Soil Regulating by Potential Phytoremediator: Pennisetum americanum (L.) K. Schum
Cited by: 28
Author(s): Bo Cao, Ying Zhang, Ziyi Wang, Mengyuan Li, Feng Yang, Dagang Jiang, Zhao Jiang
Software Mentions: 3
Published: over 6 years ago

10.3389/fmicb.2020.01994

Phenotypic Variability in a Coinfection With Three Independent Candida parapsilosis Lineages
Cited by: 10
Author(s): Emilia Gómez-Molero, Jesse R. Willis, Anna Dudakova, Laia Carreté, Michael Weig, Uwe Groß, Attila Gácser, Toni Gabaldón, Oliver Bader
Software Mentions: 3
Published: about 4 years ago

10.3389/fmicb.2020.01139

Comparison of Meconium Microbiome in Dizygotic and Monozygotic Twins Born by Caesarean Section (CS)
Cited by: 8
Author(s): Jing Yang, Su Yao, Kun Cheng, Lili Xu, Lingling Hou, Yuan Wei, Huijun Feng, Xuejian Yu, Xin Zhang, Xiao-Mei Tong, Zailing Li, Yangyu Zhao
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0101618

Honey Pollen: Using Melissopalynology to Understand Foraging Preferences of Bees in Tropical South India
Cited by: 42
Author(s): Raja Ponnuchamy, Vincent Bonhomme, S Prasad, Lipi Das, Prakash Patel, Cédric Gaucherel, A. Pragasam, K. Anupama
Software Mentions: 3
Published: over 10 years ago

10.3389/fmicb.2019.02456

Mangrove-Associated Fungal Communities Are Differentiated by Geographic Location and Host Structure
Cited by: 30
Author(s): Nicole Li Ying Lee, Danwei Huang, Zheng Bin Randolph Quek, Jen Nie Lee, Benjamin J. Wainwright
Software Mentions: 3
Published: about 5 years ago

10.1186/s12864-021-07691-2

Rapid sequence evolution driven by transposable elements at a virulence locus in a fungal wheat pathogen
Cited by: 14
Author(s): Navreet Singh, Thomas Badet, Leen Nanchira Abraham, Daniel Croll
Software Mentions: 3
Published: over 3 years ago

10.3389/fmicb.2015.00970

French invasive Asian tiger mosquito populations harbor reduced bacterial microbiota and genetic diversity compared to Vietnamese autochthonous relatives
Cited by: 73
Author(s): Guillaume Minard, Florence‐Hélène Tran, Van Trân Van, Clément Goubert, Christophe Bellet, Grégory L’Ambert, Khanh Ly Huynh Kim, Trang Huynh Thi Thuy, Patrick Mavingui, Claire Valiente Moro
Software Mentions: 3
Published: about 9 years ago

10.1186/s13071-018-2760-5

Along for the ride or missing it altogether: exploring the host specificity and diversity of haemogregarines in the Canary Islands
Cited by: 12
Author(s): Beatriz Tomé, Ana Pereira, Fátima Jorge, Miguel Á. Carretero, D. James Harris, Ana Perera
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.ppat.1009138

Population genomics of the pathogenic yeast Candida tropicalis identifies hybrid isolates in environmental samples
Cited by: 28
Author(s): Caoimhe E. O’Brien, João Oliveira-Pacheco, Eoin Ó Cinnéide, Max A. B. Haase, Chris Todd Hittinger, Thomas R. Rogers, Óscar Zaragoza, Ursula Bond, Geraldine Butler
Software Mentions: 3
Published: over 3 years ago

10.3390/ani10101742

The Impact of Producing Type and Dietary Crude Protein on Animal Performances and Microbiota Together with Greenhouse Gases Emissions in Growing Pigs
Cited by: 2
Author(s): Ahmad Reza Seradj, J. Balcells, Laura Sarri, Lorenzo Fraile, Gabriel de la Fuente Oliver
Software Mentions: 3
Published: about 4 years ago

10.1007/s00442-020-04829-z

Tropical land-use change alters trait-based community assembly rules for dung beetles and birds
Cited by: 3
Author(s): Felicity Edwards, David P. Edwards, Keith C. Hamer, Tom M. Fayle
Software Mentions: 3
Published: almost 4 years ago

10.1038/s41598-020-73976-3

Genome-wide genetic diversity yields insights into genomic responses of candidate climate-selected loci in an Andean wetland plant
Cited by: 2
Author(s): Angéline Bertin, Mara I. Espinosa, Catalina A. Bustamante, Alejandra J. Troncoso, Nicolás Gouin
Software Mentions: 3
Published: about 4 years ago

10.1186/s43008-020-00042-y

Distinct fungal communities associated with different organs of the mangrove Sonneratia alba in the Malay Peninsula
Cited by: 11
Author(s): Nicole Li Ying Lee, Danwei Huang, Zheng Bin Randolph Quek, Jen Nie Lee, Benjamin J. Wainwright
Software Mentions: 3
Published: about 4 years ago

10.1186/s13071-017-2591-9

Ecological distribution and population dynamics of Rift Valley fever virus mosquito vectors (Diptera, Culicidae) in Senegal
Cited by: 37
Author(s): Biram Bitèye, Assane Guèye Fall, Mamadou Ciss, Momar Talla Seck, Andrea Apolloni, Moussa Fall, Annelise Tran, Geoffrey Gimonneau
Software Mentions: 3
Published: almost 7 years ago

10.1038/hdy.2014.31

Genome-wide analysis reveals the ancient and recent admixture history of East African Shorthorn Zebu from Western Kenya
Cited by: 47
Author(s): Mary Mbole-Kariuki, Tad S. Sonstegard, Alan Orth, Samuel M. Thumbi, Barend M. deC. Bronsvoort, Henry K. Kiara, Philip G. Toye, Ilana Conradie, Amy Jennings, Koos Coetzer, Mark E. J. Woolhouse, Olivier Hanotte, Miika Tapio
Software Mentions: 3
Published: over 10 years ago

10.3389/fnins.2020.00127

Case-Control Study of the Effects of Gut Microbiota Composition on Neurotransmitter Metabolic Pathways in Children With Attention Deficit Hyperactivity Disorder
Cited by: 56
Author(s): Lin Wan, Wen-Rong Ge, Shan Zhang, Yulin Sun, Bin Wang, Guang Yang
Software Mentions: 3
Published: almost 5 years ago

10.1038/s41437-020-0344-6

Oceanographic features and limited dispersal shape the population genetic structure of the vase sponge Ircinia campana in the Greater Caribbean
Cited by: 7
Author(s): Sarah M. Griffiths, Mark J. Butler, Donald C. Behringer, Thierry Pérez, Richard F. Preziosi
Software Mentions: 3
Published: over 4 years ago

10.1186/s13099-018-0281-6

Alteration in gut microbiota associated with hepatitis B and non-hepatitis virus related hepatocellular carcinoma
Cited by: 109
Author(s): Qisha Liu, Liancheng Fan, Yaoyao Zhuang, Jian Xu, Jianwei Wang, Xuhua Mao, Yewei Zhang, Xingyin Liu
Software Mentions: 3
Published: almost 6 years ago

10.3389/fpls.2020.568009

Root Morphological Traits of Seedlings Are Predictors of Seed Yield and Quality in Winter Oilseed Rape Hybrid Cultivars
Cited by: 12
Author(s): Julien Louvieaux, Martin Spanoghe, Christian Hermans
Software Mentions: 3
Published: about 4 years ago

10.3389/fpls.2021.692463

Genome-Wide Assessment of Population Structure and Genetic Diversity of the Global Finger Millet Germplasm Panel Conserved at the ICRISAT Genebank
Cited by: 3
Author(s): C. Backiyalakshmi, Mani Vetriventhan, Santosh Deshpande, C. Babu, Victor Allan, D. Naresh, Rajeev Gupta, V. C. R. Azevedo
Software Mentions: 3
Published: over 3 years ago

10.1186/s12862-014-0269-x

Phenotype and animal domestication: A study of dental variation between domestic, wild, captive, hybrid and insular Sus scrofa
Cited by: 60
Author(s): Allowen Evin, Keith Dobney, Renate Schafberg, Joseph Owen, Una Strand Viðarsdóttir, Greger Larson, Thomas Cucchi
Software Mentions: 3
Published: almost 10 years ago

10.1038/s41396-018-0167-0

Genetic variability and ontogeny predict microbiome structure in a disease-challenged montane amphibian
Cited by: 46
Author(s): Sarah M. Griffiths, Xavier A. Harrison, Ché Weldon, Michael D. Wood, Abigail Pretorius, Kevin Hopkins, Graeme Fox, Richard F. Preziosi, Rachael E. Antwis
Software Mentions: 3
Published: over 6 years ago

10.3897/zookeys.100.1427

Habitat disturbance and hydrological parameters determine the body size and reproduction strategy of alluvial ground beetles
Cited by: 27
Author(s): Michael Gerisch
Software Mentions: 3
Published: over 13 years ago

10.3389/fpls.2018.00400

Genetic Resources in the “Calabaza Pipiana” Squash (Cucurbita argyrosperma) in Mexico: Genetic Diversity, Genetic Differentiation and Distribution Models
Cited by: 19
Author(s): Guillermo Sánchez‐de la Vega, Gabriela Castellanos‐Morales, Niza Gámez, Helena S. Hernández‐Rosales, Alejandra Vázquez‐Lobo, Erika Aguirre‐Planter, Juan P. Jaramillo‐Correa, Salvador Montes‐Hernández, Rafael Lira‐Saade, Luis E. Eguiarte
Software Mentions: 3
Published: over 6 years ago

10.3390/v13071258

Geographical Distribution and Genetic Diversity of Bank Vole Hepaciviruses in Europe
Cited by: 2
Author(s): Julia Schneider, Bernd Hoffmann, Cristina Fevola, Marie Luisa Schmidt, Christian Imholt, Stefan Fischer, Frauke Ecke, Birger Hörnfeldt, Магнус Магнуссон, Gert E. Olsson, Annapaola Rizzoli, Valentina Tagliapietra, Mario Chiari, Chantal Reusken, Elena Bužan, Mária Kazimírová, Michał Stanko, Thomas A. White, Daniela Reil, Anna Obiegala, Anna Meredith, Jan Felix Drexler, Sandra Eßbauer, Heikki Henttonen, Jens Jacob, Heidi C. Hauffe, Gerald Heckel, Rainer G. Ulrich
Software Mentions: 3
Published: over 3 years ago

10.1371/journal.pone.0209508

Effect of barriers and distance on song, genetic, and morphological divergence in the highland endemic Timberline Wren (Thryorchilus browni, Troglodytidae)
Cited by: 7
Author(s): Andrés Camacho-Alpízar, Eric J. Fuchs, Gilbert Barrantes
Software Mentions: 3
Published: almost 6 years ago

10.1093/gigascience/giz058

Disordered gut microbiota and alterations in metabolic patterns are associated with atrial fibrillation
Cited by: 103
Author(s): Kun Zuo, Jing Li, Kuibao Li, Chaowei Hu, Yuanfeng Gao, Mulei Chen, Roumu Hu, Ye Liu, Hongjie Chi, Hongjiang Wang, Yanwen Qin, Xiaoyan Liu, Shichao Li, Jun Cai, Jiu-Chang Zhong, Xinchun Yang
Software Mentions: 3
Published: over 5 years ago

10.3389/fpls.2021.517547

Genetic Diversity and Population Structure in Bryophyte With Facultative Nannandry
Cited by: 2
Author(s): Annick S. Lang, Thies Gehrmann, Nils Cronberg
Software Mentions: 3
Published: over 3 years ago

10.1016/j.gpb.2020.06.011

Classification of the Gut Microbiota of Patients in Intensive Care Units During Development of Sepsis and Septic Shock
Cited by: 28
Author(s): Wanglin Liu, Mingyue Cheng, Jinman Li, Peng Zhang, Hang Fan, Qinghe Hu, Maozhen Han, Longxiang Su, Huaiwu He, Yigang Tong, Kang Ning, Yun Long
Software Mentions: 3
Published: almost 4 years ago

10.1093/gbe/evz113

Genome-wide SNP Data Reveal an Overestimation of Species Diversity in a Group of Hawkmoths
Cited by: 35
Author(s): Anna K. Hundsdoerfer, Kyung Min Lee, Ian J. Kitching, Marko Mutanen
Software Mentions: 3
Published: over 5 years ago

10.3390/ani10101803

3D Geometric Morphometrics Reveals Convergent Character Displacement in the Central European Contact Zone between Two Species of Hedgehogs (Genus Erinaceus)
Cited by: 1
Author(s): Barbora Černá Bolfíková, Allowen Evin, Markéta Knitlová, Miroslava Loudová, Anna Sztencel-Jabłonka, Wiesław Bogdanowicz, Pavel Hulva
Software Mentions: 3
Published: about 4 years ago

10.1186/s12862-017-0930-2

Tripartite species interaction: eukaryotic hosts suffer more from phage susceptible than from phage resistant bacteria
Cited by: 26
Author(s): Carolin Charlotte Wendling, Agnes Piecyk, Dominik Refardt, Cynthia Maria Chibani, Robert Hertel, Heiko Liesegang, Boyke Bunk, Jörg Overmann, Olivia Roth
Software Mentions: 3
Published: over 7 years ago

10.1186/s12711-021-00636-z

Assessment of trade-offs between feed efficiency, growth-related traits, and immune activity in experimental lines of layer chickens
Cited by: 18
Author(s): Tatiana Zerjal, Sonja Härtle, David Gourichon, Vanaïque Guillory, Nicolas Bruneau, Dénis Laloë, Marie-Hélène Pinard-van Der Laan, Sascha Trapp, Bertrand Bed’Hom, Pascale Quéré
Software Mentions: 3
Published: over 3 years ago

10.3390/genes12081279

Population Genomics Reveals Gene Flow and Adaptive Signature in Invasive Weed Mikania micrantha
Cited by: 0
Author(s): Xiaoxian Ruan, Zhen Wang, Yingjuan Su, Ting Wang
Software Mentions: 3
Published: over 3 years ago

10.1186/s12862-015-0413-2

Beringian sub-refugia revealed in blackfish (Dallia): implications for understanding the effects of Pleistocene glaciations on Beringian taxa and other Arctic aquatic fauna
Cited by: 10
Author(s): Matthew A. Campbell, Naoki Takebayashi, J. Andrés López
Software Mentions: 3
Published: over 9 years ago

10.3389/fpls.2018.01677

Transgenerational Effects and Epigenetic Memory in the Clonal Plant Trifolium repens
Cited by: 66
Author(s): Alejandra Pilar Rendina González, Veronica Preite, Koen Verhoeven, Vít Latzel
Software Mentions: 3
Published: about 6 years ago

10.5194/aab-64-91-2021

Genetic diversity and population structure in divergent German cattle selection lines on the basis of milk protein polymorphisms
Cited by: 2
Author(s): Lisa G Hohmann, Christina Weimann, Carsten Scheper, G. Erhardt, Sven König
Software Mentions: 3
Published: over 3 years ago

10.1371/journal.pone.0035742

Leaf Trait-Environment Relationships in a Subtropical Broadleaved Forest in South-East China
Cited by: 65
Author(s): Wenzel Kröber, Martin Böhnke, Erik Welk, Christian Wirth, Helge Bruelheide
Software Mentions: 3
Published: over 12 years ago

10.1186/s40529-021-00314-9

Agricultural management practices influence the soil enzyme activity and bacterial community structure in tea plantations
Cited by: 13
Author(s): Yu-Pei Chen, Chia-Fang Tsai, Punchappady Devasya Rekha, Sudeep D. Ghate, Hsi‐Yuan Huang, Yi-Han Hsu, Li-Ling Liaw, Chiu-Chung Young
Software Mentions: 3
Published: over 3 years ago

10.1186/s13068-020-01740-w

Metabolic regulation of ethanol-type fermentation of anaerobic acidogenesis at different pH based on transcriptome analysis of Ethanoligenens harbinense
Cited by: 7
Author(s): Zhen Li, Yu Lou, Jie Ding, Bingfeng Liu, Guo-Jun Xie, Nanqi Ren, Defeng Xing
Software Mentions: 3
Published: over 4 years ago

10.1038/s41598-020-75207-1

Curing piglets from diarrhea and preparation of a healthy microbiome with Bacillus treatment for industrial animal breeding
Cited by: 24
Author(s): Shousong Yue, Zhentian Li, Fangfang Hu, Jean-François Picimbon
Software Mentions: 3
Published: about 4 years ago

10.1371/journal.pone.0190705

Biological invasion of oxeye daisy (Leucanthemum vulgare) in North America: Pre-adaptation, post-introduction evolution, or both?
Cited by: 14
Author(s): Sonja J. Stutz, Patrik Mráz, H. L. Hinz, Heinz Müller‐Schärer, Urs Schaffner
Software Mentions: 3
Published: almost 7 years ago

10.1186/s40462-018-0130-8

Activity and movement of free-living box turtles are largely independent of ambient and thermal conditions
Cited by: 14
Author(s): Adam F. Parlin, Jessica A. Nardone, John Kelly Dougherty, Mimi Rebein, Kamran Safi, Paul J. Schaeffer
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0013038

Insights into the Genetic History of French Cattle from Dense SNP Data on 47 Worldwide Breeds
Cited by: 165
Author(s): Mathieu Gautier, Dénis Laloë, Katayoun Moazami‐Goudarzi
Software Mentions: 3
Published: about 14 years ago

10.1038/s41598-020-69029-4

Molecular phylogenetic analysis and morphological reassessments of thief ants identify a new potential case of biological invasions
Cited by: 5
Author(s): Mostafa R. Sharaf, Dietrich Gotzek, Benoit Guénard, Brian L. Fisher, Abdulrahman S. Aldawood, Hathal M. Al Dhafer, Amr A. Mohamed
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0164814

Anthropogenic Matrices Favor Homogenization of Tree Reproductive Functions in a Highly Fragmented Landscape
Cited by: 7
Author(s): Magda Silva Carneiro, Caroline Cambraia Furtado Campos, Luiz Alberto Beijo, Flávio Nunes Ramos
Software Mentions: 3
Published: about 8 years ago

10.1371/journal.pntd.0006928

Molecular genotyping, diversity studies and high-resolution molecular markers unveiled by microsatellites in Giardia duodenalis
Cited by: 6
Author(s): Maurício Durigan, Cláudio Benício Cardoso-Silva, Maisa Ciampi‐Guillardi, Guilherme Toledo-Silva, Gustavo Maruyama Mori, Regina Maura Bueno Franco, Anete Pereira de Souza
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pone.0074914

A New Method for Extracting Skin Microbes Allows Metagenomic Analysis of Whole-Deep Skin
Cited by: 21
Author(s): Marc García-Garcerá, Koldo Garcia-Etxebarria, Mireia Coscollá, Amparo Latorre, Francesc Calafell
Software Mentions: 3
Published: about 11 years ago

10.1186/s40168-017-0384-1

Host contributes to longitudinal diversity of fecal microbiota in swine selected for lean growth
Cited by: 77
Author(s): Deren Lu, Francesco Tiezzi, Constantino Schillebeeckx, Nathan P. McNulty, Charles V. Schwab, Caleb M Shull, Christian Maltecca
Software Mentions: 3
Published: almost 7 years ago

10.1371/journal.pone.0243853

Quick and efficient approach to develop genomic resources in orphan species: Application in Lavandula angustifolia
Cited by: 3
Author(s): Berline Fopa Fomeju, Dominique Brunel, Aurélie Berard, Jean-Baptiste Rivoal, Philippe Gallois, Marie‐Christine Le Paslier, Jean-Pierre Bouverat-Bernier
Software Mentions: 3
Published: almost 4 years ago

10.1186/1471-2105-14-178

Exploring the transcription factor activity in high-throughput gene expression data using RLQ analysis
Cited by: 7
Author(s): Florent Baty, Jochen J. Rüdiger, Nicola Miglino, Lukas Kern, Pieter Borger, Martin Brutsche
Software Mentions: 3
Published: over 11 years ago

10.1038/s41598-020-61908-0

Multi-scale spatial genetic structure of the vector-borne pathogen ‘Candidatus Phytoplasma prunorum’ in orchards and in wild habitats
Cited by: 6
Author(s): Véronique Marie-Jeanne, François Bonnot, Gaël Thébaud, Jean Peccoud, Gérard Labonne, Nicolas Sauvion
Software Mentions: 3
Published: over 4 years ago

10.1038/s41598-021-94802-4

Genetic diversity and population structure of ridge gourd (Luffa acutangula) accessions in a Thailand collection using SNP markers
Cited by: 3
Author(s): Grimar Abdiel Perez, Pumipat Tongyoo, Julapark Chunwongse, Hans de Jong, Anucha Wongpraneekul, Waraporn Sinsathapornpong, Paweena Chuenwarin
Software Mentions: 3
Published: over 3 years ago

10.1038/s41598-019-56919-5

Environmental impact of tsetse eradication in Senegal
Cited by: 7
Author(s): Mamadou Ciss, Mireille Djimangali Bassène, Momar Talla Seck, Abdou G. Mbaye, Baba Sall, Assane Guèye Fall, Marc J. B. Vreysen, Jérémy Bouyer
Software Mentions: 3
Published: almost 5 years ago

10.1371/journal.pone.0213618

Division of labor and brain evolution in insect societies: Neurobiology of extreme specialization in the turtle ant Cephalotes varians
Cited by: 14
Author(s): Darcy G. Gordon, Alejandra Zelaya, Ignacio Arganda‐Carreras, Sara Arganda, James F. A. Traniello
Software Mentions: 3
Published: over 5 years ago

10.1016/j.isci.2021.102816

The gut microbiome buffers dietary adaptation in Bronze Age domesticated dogs
Cited by: 7
Author(s): Simone Rampelli, Silvia Turroni, Florencia Debandi, Antton Alberdi, Stephanie L. Schnorr, Courtney A. Hofman, Alberto Taddia, Riccardo Helg, Elena Biagi, Patrizia Brigidi, Federica D’Amico, Maurizio Cattani, Marco Candela
Software Mentions: 3
Published: over 3 years ago

10.1371/journal.pone.0067463

Trypanosoma cruzi Infection in Neotropical Wild Carnivores (Mammalia: Carnivora): At the Top of the T. cruzi Transmission Chain
Cited by: 71
Author(s): Fabiana Lopes Rocha, André Luiz Rodrigues Roque, Juliane Saab de Lima, Carolina Carvalho Cheida, Frederico Gemesio Lemos, Fernanda Cavalcanti de Azevedo, Ricardo Corassa Arrais, Daniele Bilac, Heitor Miraglia Herrera, Guilherme Mourão, Ana María Jansen
Software Mentions: 3
Published: over 11 years ago

10.1155/2020/4673250

Changes in Gut Microorganism in Patients with Positive Immune Antibody-Associated Recurrent Abortion
Cited by: 4
Author(s): Min Jin, Dong Li, Rui Ji, Wen Liu, Xiaofei Xu, Xin Feng
Software Mentions: 3
Published: about 4 years ago

10.1186/s12859-019-3187-5

Impact of quality trimming on the efficiency of reads joining and diversity analysis of Illumina paired-end reads in the context of QIIME1 and QIIME2 microbiome analysis frameworks
Cited by: 51
Author(s): Attayeb Mohsen, Jonguk Park, Yi‐An Chen, Hitoshi Kawashima, Kenji Mizuguchi
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pone.0058005

Gut Microbiota Patterns Associated with Colonization of Different Clostridium difficile Ribotypes
Cited by: 60
Author(s): Jure Škraban, Sašo Džeroski, Bernard Ženko, Domen Mongus, Simon Gangl, Maja Rupnik
Software Mentions: 3
Published: over 11 years ago

10.1371/journal.pone.0211852

Could posture reflect welfare state? A study using geometric morphometrics in riding school horses
Cited by: 18
Author(s): Emilie Sénèque, Clémence Lesimple, Stéphane Morisset, Martine Hausberger
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pone.0118501

Adaptive Differentiation in Seedling Traits in a Hybrid Pine Species Complex, Pinus densata and Its Parental Species, on the Tibetan Plateau
Cited by: 4
Author(s): Jianghong Meng, Jian‐Feng Mao, Zhao Wang, Fangqian Xing, Xinyu Chen, Hao Liu, Zhen Xing, Xiaoru Wang, Yue Li
Software Mentions: 3
Published: over 9 years ago

10.1371/journal.pone.0213360

On the relative importance of space and environment in farmland bird community assembly
Cited by: 8
Author(s): Laura Henckel, Christine N. Meynard, Vincent Devictor, Nicolas Mouquet, Vincent Bretagnolle
Software Mentions: 3
Published: over 5 years ago

10.3390/ani10122276

First Insights into the Population Genetic Structure and Heterozygosity–Fitness Relationship in Roe Deer Inhabiting the Area between the Alps and Dinaric Mountains
Cited by: 4
Author(s): Elena Bužan, Urška Gerič, Sandra Potušek, Katarina Flajšman, Boštjan Pokorny
Software Mentions: 3
Published: almost 4 years ago

10.1371/journal.pone.0175735

Indirect effect of temperature on fish population abundances through phenological changes
Cited by: 31
Author(s): Lucie Kuczynski, Mathieu Chevalier, Pascal Laffaille, Marion Legrand, Gaël Grenouillet
Software Mentions: 3
Published: over 7 years ago

10.1038/s41598-019-52023-w

Compartmentalized evolution of Bovine Viral Diarrhoea Virus type 2 in an immunotolerant persistently infected cow
Cited by: 7
Author(s): Barbara Colitti, Chiara Nogarol, Mario Giacobini, Maria Teresa Capucchio, Ilaria Biasato, Sergio Rosati, Luigi Bertolotti
Software Mentions: 3
Published: about 5 years ago

10.1038/s41598-019-51927-x

Accumulating crop functional trait data with citizen science
Cited by: 10
Author(s): Marney E. Isaac, Adam R. Martin
Software Mentions: 3
Published: about 5 years ago

10.7717/peerj.3552

Landscape metrics as functional traits in plants: perspectives from a glacier foreland
Cited by: 4
Author(s): Tommaso Sitzia, Matteo Dainese, Bertil Krüsi, Duncan McCollin
Software Mentions: 3
Published: over 7 years ago

10.3390/cancers13081903

Circular RNA in Chemonaive Lymph Node Negative Colon Cancer Patients
Cited by: 0
Author(s): I. van den Berg, Marcel Smid, Robert R.J. Coebergh van den Braak, Carolien H.M. van Deurzen, Vanja de Weerd, John A. Foekens, Jan N.M. IJzermans, John W.M. Martens, Saskia M. Wilting
Software Mentions: 3
Published: over 3 years ago

10.1186/s13568-021-01191-y

Characterization and comparison of the bacterial community between complete intensive and extensive feeding patterns in pigs
Cited by: 3
Author(s): Xinjian Li, Mingyu Wang, Yansong Xue, Dongdong Duan, Cong Liu, Jianwei Ye, Xuelei Han, Ruimin Qiao, Kejun Wang
Software Mentions: 3
Published: over 3 years ago

10.1186/s12915-019-0715-8

The intestinal microbiota regulates host cholesterol homeostasis
Cited by: 114
Author(s): Tiphaine Le Roy, Emelyne Lécuyer, Benoît Chassaing, Moez Rhimi, Marie Lhomme, Samira Boudebbouze, Farid Ichou, Júlia Haro Barceló, Thierry Huby, Maryse Guérin, Philippe Giral, Emmanuelle Maguin, Nathalie Kapel, Philippe Gérard, Karine Clément, Philippe Lesnik
Software Mentions: 3
Published: almost 5 years ago

10.1155/2013/796183

Examining Similarity Structure: Multidimensional Scaling and Related Approaches in Neuroimaging
Cited by: 17
Author(s): Svetlana V. Shinkareva, Jing Wang, Douglas H. Wedell
Software Mentions: 3
Published: almost 12 years ago

10.3390/s20010286

Classification of Sleep Apnea Severity by Electrocardiogram Monitoring Using a Novel Wearable Device
Cited by: 25
Author(s): Florent Baty, Maximilian Boesch, Sandra Widmer, Simon Annaheim, Piero Fontana, Martin Camenzind, René M. Rossi, Otto D. Schoch, Martin Brutsche
Software Mentions: 3
Published: almost 5 years ago

10.3390/ijms22031460

Diazotroph Paenibacillus triticisoli BJ-18 Drives the Variation in Bacterial, Diazotrophic and Fungal Communities in the Rhizosphere and Root/Shoot Endosphere of Maize
Cited by: 16
Author(s): Yongbin Li, Li Qin, Sanfeng Chen
Software Mentions: 3
Published: almost 4 years ago

10.15252/emmm.201607006

Transcriptional response to hepatitis C virus infection and interferon‐alpha treatment in the human liver
Cited by: 48
Author(s): Tujana Boldanova, Aleksei Suslov, Markus H. Heim, Anamaria Necşulea
Software Mentions: 3
Published: over 7 years ago

10.1371/journal.pone.0174248

Inter-nesting movements and habitat-use of adult female Kemp’s ridley turtles in the Gulf of Mexico
Cited by: 15
Author(s): Donna J. Shaver, Kristen M. Hart, Ikuko Fujisaki, David N. Bucklin, Autumn R. Iverson, Cynthia Rubio, Thomas F. Backof, Patrick M. Burchfield, Raul de Jesus Gonzales Diaz Miron, Peter H. Dutton, Amy Frey, Jaime Peña, Daniel Gomez Gamez, H. Martínez, Jaime Ortíz
Software Mentions: 3
Published: over 7 years ago

10.1002/ece3.445

Geographically multifarious phenotypic divergence during speciation
Cited by: 19
Author(s): Zachariah Gompert, Lauren K. Lucas, Chris C. Nice, James A. Fordyce, C. Alex Buerkle, Matthew L. Forister
Software Mentions: 3
Published: almost 12 years ago

10.1038/s41598-019-49462-w

Discrepant gut microbiota markers for the classification of obesity-related metabolic abnormalities
Cited by: 200
Author(s): Qiang Zeng, Dongfang Li, Yuan He, Yinhu Li, Zhenyu Yang, Xiaolan Zhao, Yanhong Liu, Yu Wang, Jing Sun, Xin Feng, Fei Wang, Jiaxing Chen, Yuejie Zheng, Yonghong Yang, Xiaogang Sun, Ximing Xu, Daxi Wang, Toby Kenney, Yiqi Jiang, Hong Gu, Yongli Li, Ke Zhou, Shuai Cheng Li, Wenkui Dai
Software Mentions: 3
Published: about 5 years ago

10.1038/s41598-018-36867-2

Soil parameters, land use, and geographical distance drive soil bacterial communities along a European transect
Cited by: 50
Author(s): Pierre Plassart, Nicolas Chemidlin Prévost-Bouré, Stéphane Uroz, Samuel Dequiedt, D. Stone, Rachel Creamer, Robert I. Griffiths, Mark Bailey, Lionel Ranjard, Philippe Lemanceau
Software Mentions: 3
Published: almost 6 years ago

10.1002/ece3.6793

Functional shifts in estuarine zooplankton in response to climate variability
Cited by: 9
Author(s): Anna Jansson, Riina Klais‐Peets, Evelina Grinienė, Gunta Rubene, А. С. Семенова, Aleksandra M. Lewandowska, Jonna Engström‐Öst
Software Mentions: 3
Published: about 4 years ago

10.1038/s41598-018-35293-8

Conversion from environmental filtering to randomness as assembly rule of ground beetle assemblages along an urbanization gradient
Cited by: 34
Author(s): Tibor Magura, Gábor L. Löveï, Béla Tóthmérész
Software Mentions: 3
Published: about 6 years ago

10.1038/s41598-018-34101-7

A striking new species of leaf warbler from the Lesser Sundas as uncovered through morphology and genomics
Cited by: 8
Author(s): Nathaniel S. R. Ng, Dewi M. Prawiradilaga, Elize Y. X. Ng, Suparno Suparno, Hidayat Ashari, Colin R. Trainor, Philippe Verbelen, Frank E. Rheindt
Software Mentions: 3
Published: about 6 years ago

10.1186/s12985-018-0992-9

Geographical distribution and relative risk of Anjozorobe virus (Thailand orthohantavirus) infection in black rats (Rattus rattus) in Madagascar
Cited by: 15
Author(s): Vololoniaina Raharinosy, Marie-Marie Olive, Fehivola Mandanirina Andriamiarimanana, Soa Fy Andriamandimby, Jean-Pierre Ravalohery, Seta Andriamamonjy, Claudia Filippone, Danielle Rakoto, Sandra Telfer, Jean‐Michel Heraud
Software Mentions: 3
Published: over 6 years ago

10.1038/s41598-018-31074-5

Novel genome and genome-wide SNPs reveal early fragmentation effects in an edge-tolerant songbird population across an urbanized tropical metropolis
Cited by: 13
Author(s): David J. X. Tan, Balaji Chattopadhyay, Kritika M. Garg, Emilie Cros, Per G. P. Ericson, Martin Irestedt
Software Mentions: 3
Published: about 6 years ago

10.1186/2049-2618-1-31

Community differentiation of the cutaneous microbiota in psoriasis
Cited by: 315
Author(s): Alexander V. Alekseyenko, Guillermo I. Perez-Perez, Aieska de Souza, Bruce Strober, Zhan Gao, Monika Bihan, Kelvin Li, Barbara A. Methé, Martin J. Blaser
Software Mentions: 3
Published: almost 11 years ago

10.1186/1752-0509-8-S2-S4

Integrative omics analysis. A study based on Plasmodium falciparum mRNA and protein data
Cited by: 12
Author(s): Oana Tomescu, Diethard Mattanovich, Gerhard Thallinger
Software Mentions: 3
Published: over 10 years ago

10.1038/s41598-018-22209-9

Disturbance Regimes Drive The Diversity of Regional Floristic Pools Across Guianan Rainforest Landscapes
Cited by: 22
Author(s): Stéphane Guitet, Daniel Sabatier, Olivier Brunaux, Pierre Couteron, Thomas Denis, Vincent Freycon, Sophie Gonzalez, Bruno Hérault, Gaëlle Jaouen, Jean‐François Molino, Raphaël Pélissier, Cécile Richard‐Hansen, Grégoire Vincent
Software Mentions: 3
Published: over 6 years ago

10.1038/s41598-020-60837-2

The atlas of StW 573 and the late emergence of human-like head mobility and brain metabolism
Cited by: 11
Author(s): Amélie Beaudet, Ronald J. Clarke, Jason L. Heaton, Travis Rayne Pickering, Kristian J. Carlson, Robin H. Crompton, Tea Jashashvili, Laurent Bruxelles, Kudakwashe Jakata, Lunga Bam, Luc Van Hoorebeke, Kathleen Kuman, Dominic Stratford
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pone.0109234

What Goes in Must Come out: Testing for Biases in Molecular Analysis of Arbuscular Mycorrhizal Fungal Communities
Cited by: 15
Author(s): T. E. Anne Cotton, Alex J. Dumbrell, Thorunn Helgason
Software Mentions: 2
Published: about 10 years ago

10.1371/journal.pone.0143566

Diversity and Interactions of Wood-Inhabiting Fungi and Beetles after Deadwood Enrichment
Cited by: 16
Author(s): Andreas Floren, Dirk Krüger, Tobias Müller, Marcus Dittrich, Renate Rudloff, Björn Hoppe, K. Eduard Linsenmair
Software Mentions: 2
Published: almost 9 years ago

Projects: cran: ade4

Papers Mentioning ade4 809