cran: ade4 | Projects | Ecosyste.ms: Papers

10.1186/s13567-014-0114-7

Multilocus sequence analysis of Anaplasma phagocytophilum reveals three distinct lineages with different host ranges in clinically ill French cattle
Cited by: 25
Author(s): Amélie Chastagner, Thibaud Dugat, Gwenaël Vourc’H, Hélène Verheyden, Loïc Legrand, Véronique Bachy, Luc Chabanne, Guy Joncour, Renaud Maillard, Henri-Jean Boulouis, Nadia Haddad, Xavier Bailly, Agnès Leblond
Software Mentions: 4
Published: almost 10 years ago

10.1371/journal.pone.0200959

Comparing species richness, functional diversity and functional composition of waterbird communities along environmental gradients in the neotropics
Cited by: 32
Author(s): Bia de Arruda Almeida, Andy J. Green, Esther Sebastián‐González, Luiz dos Anjos
Software Mentions: 4
Published: over 6 years ago

10.1038/s41598-021-90226-2

Refinement of 16S rRNA gene analysis for low biomass biospecimens
Cited by: 8
Author(s): Remy Villette, Gaëlle Autaa, Sophie Hind, Johanna B. Holm, Alicia Moreno-Sabater, Martin Larsen
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pone.0212359

Rosellinia necatrix infection induces differential gene expression between tolerant and susceptible avocado rootstocks
Cited by: 16
Author(s): Adela Zumaquero, Elsa Martínez-Ferri, Antonio J. Matas, Bianca Reeksting, Nicholas Abraham Olivier, Fernando Pliego‐Alfaro, Araceli Barceló, Noëlani van den Berg, Clara Pliego
Software Mentions: 4
Published: almost 6 years ago

10.1186/s12864-015-1266-1

Genetic diversity and trait genomic prediction in a pea diversity panel
Cited by: 80
Author(s): Judith Burstin, Pauline Salloignon, Marianne Chabert-Martinello, Jean Bernard Magnin-Robert, Mathieu Siol, Françoise Jacquin, Aurélie Chauveau, Caroline Pont, Grégoire Aubert, Catherine Delaitre, Caroline Truntzer, Gérard Duc
Software Mentions: 4
Published: over 9 years ago

10.3389/fmicb.2019.00167

The Environment and Cyanophage Diversity: Insights From Environmental Sequencing of DNA Polymerase
Cited by: 14
Author(s): Jan F. Finke, Curtis A. Suttle
Software Mentions: 4
Published: almost 6 years ago

10.1038/s41598-021-92027-z

Changes in gut microbiota in the acute phase after spinal cord injury correlate with severity of the lesion
Cited by: 29
Author(s): Gabriele Bazzocchi, Silvia Turroni, Maria Chiara Bulzamini, Federica D’Amico, Angelica Bava, Massimo Castiglioni, Valentina Cagnetta, Ernesto Losavio, Maurizio Cazzaniga, Laura Terenghi, Luisa De Palma, Giampiero Frasca, Beatrice Aiachini, Sonia Cremascoli, Antonino Massone, Claudia Oggerino, Maria Pia Onesta, Laura Rapisarda, Maria Cristina Pagliacci, Sauro Biscotto, Michele Scarazzato, Tiziana Giovannini, Mimosa Balloni, Marco Candela, Patrizia Brigidi, Carlotte Kiekens
Software Mentions: 4
Published: over 3 years ago

10.1038/s41598-020-76645-7

Trait convergence and trait divergence in lake phytoplankton reflect community assembly rules
Cited by: 12
Author(s): Gábor Borics, Viktória B‐Béres, István Bácsi, Balázs András Lukács, Enikő T‐Krasznai, Zoltán Botta‐Dukát, Gábor Várbíró
Software Mentions: 4
Published: about 4 years ago

10.3390/molecules25235505

Carbon Atoms Speaking Out: How the Geometric Sensitivity of 13C Chemical Shifts Leads to Understanding the Colour Tuning of Phycocyanobilin in Cph1 and AnPixJ
Cited by: 5
Author(s): Sascha Jähnigen, Daniel Sebastiani
Software Mentions: 4
Published: almost 4 years ago

10.1038/s41598-021-88577-x

Predicting range shifts of three endangered endemic plants of the Khorassan-Kopet Dagh floristic province under global change
Cited by: 20
Author(s): Mohammad Bagher Erfanian, Mostafa Sagharyan, Farshid Memariani, Hamid Ejtehadi
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pone.0072966

EGFR Exon-Level Biomarkers of the Response to Bevacizumab/Erlotinib in Non-Small Cell Lung Cancer
Cited by: 11
Author(s): Florent Baty, Sacha I. Rothschild, Martin Früh, Daniel Betticher, Cornelia Dröge, Richard Cathomas, Daniel Rauch, Oliver Gautschi, Lukas Bubendorf, Susanne Crowe, Francesco Zappa, Miklos Pless, Martin Brutsche
Software Mentions: 4
Published: about 11 years ago

10.1186/s12862-021-01849-y

Multiple paths to cold tolerance: the role of environmental cues, morphological traits and the circadian clock gene vrille
Cited by: 22
Author(s): Noora Poikela, Venera Tyukmaeva, Anneli Hoikkala, Maaria Kankare
Software Mentions: 4
Published: over 3 years ago

10.3389/fcimb.2021.573923

Impact of the Gut Microbiome on the Progression of Hepatitis B Virus Related Acute-on-Chronic Liver Failure
Cited by: 6
Author(s): Xuebing Yao, Haiping Yu, Guoyin Fan, Haihong Xiang, Li‐Hong Long, Hui Xu, Zhiguo Wu, Mingfa Chen, Wen-Na Xi, Gao Z, Cuiyun Liu, Wenlan Gong, Aoyu Yang, Ke Sun, Rongyan Yu, Junrong Liang, Baogang Xie, Shihui Sun
Software Mentions: 4
Published: over 3 years ago

10.1038/s41598-020-68222-9

The implication of metabolically active Vibrio spp. in the digestive tract of Litopenaeus vannamei for its post-larval development
Cited by: 6
Author(s): Estefanía Garibay‐Valdez, Luis Rafael Martínez‐Córdova, Marco Antonio López‐Torres, F.J. Almendáriz-Tapia, Marcel Martínez‐Porchas, Kadiya Calderón
Software Mentions: 4
Published: over 4 years ago

10.3389/fgene.2019.01035

Population Genomics of the Neotropical Brown Stink Bug, Euschistus heros: The Most Important Emerging Insect Pest to Soybean in Brazil
Cited by: 15
Author(s): Maria Imaculada Zucchi, Erick M. G. Cordeiro, Weijie Xing, Letícia Marise Lamana, Patrick J. Brown, Shilpa Manjunatha, João Paulo Gomes Viana, Celso Omoto, José Baldin Pinheiro, Steven J. Clough
Software Mentions: 4
Published: about 5 years ago

10.1038/s41598-017-16007-y

Warming, shading and a moth outbreak reduce tundra carbon sink strength dramatically by changing plant cover and soil microbial activity
Cited by: 31
Author(s): Mathilde Borg Dahl, Anders Priemé, Asker Brejnrod, Peter Brusvang, Magnus Lund, Josephine Nymand, Magnus Kramshøj, H. Ro‐Poulsen, Merian Skouw Haugwitz
Software Mentions: 4
Published: almost 7 years ago

10.1371/journal.pone.0155547

A Source Area Approach Demonstrates Moderate Predictive Ability but Pronounced Variability of Invasive Species Traits
Cited by: 5
Author(s): Günther Klonner, Stefan Fischer, Franz Essl, Stefan Dullinger
Software Mentions: 4
Published: over 8 years ago

10.1038/srep30115

Genomic content typifying a prevalent clade of bovine mastitis-associated Escherichia coli
Cited by: 39
Author(s): Robert Goldstone, Susan R. Harris, David George Emslie Smith
Software Mentions: 4
Published: over 8 years ago

10.1002/ece3.5992

Generalist Eimeria species in rodents: Multilocus analyses indicate inadequate resolution of established markers
Cited by: 13
Author(s): Víctor Hugo Jarquín‐Díaz, Alice Balard, Anna Mácová, Jenny Jost, Tabea Roth von Szepesbéla, Karin Berktold, Steffen Tank, Jana Kvičerová, Emanuel Heitlinger
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.pone.0236633

A comparison of PTI defense profiles induced in Solanum tuberosum by PAMP and non-PAMP elicitors shows distinct, elicitor-specific responses
Cited by: 7
Author(s): Rafaela Lopes Martin, Pauline Le Boulch, Pauline Clin, Adrián Schwarzenberg, Jean-Claude Yvin, Didier Andrivon, Éric Nguema-Ona, Florence Val
Software Mentions: 4
Published: over 4 years ago

10.1002/ece3.7225

Differential geographic patterns in song components of male Albert’s lyrebirds
Cited by: 4
Author(s): Fiona Backhouse, Anastasia H. Dalziell, Robert D. Magrath, Aaron N. Rice, Taylor L. Crisologo, Justin A. Welbergen
Software Mentions: 4
Published: almost 4 years ago

10.3390/microorganisms9081585

Whole Genome Sequencing Refines Knowledge on the Population Structure of Mycobacterium bovis from a Multi-Host Tuberculosis System
Cited by: 11
Author(s): Ana C. Reis, Liliana C. M. Salvador, Suelee Robbe‐Austerman, Rogério Tenreiro, Ana Botelho, Teresa Albuquerque, Mónica V. Cunha
Software Mentions: 4
Published: over 3 years ago

10.3389/fnbeh.2020.618180

PsyCoP – A Platform for Systematic Semi-Automated Behavioral and Cognitive Profiling Reveals Gene and Environment Dependent Impairments of Tcf4 Transgenic Mice Subjected to Social Defeat
Cited by: 8
Author(s): Paul Volkmann, Marius Stephan, Sven Krackow, Niels Rosendal Jensen, Moritz J. Rossner
Software Mentions: 4
Published: almost 4 years ago

10.1002/ece3.3682

Rule reversal: Ecogeographical patterns of body size variation in the common treeshrew (Mammalia, Scandentia)
Cited by: 18
Author(s): Eric J. Sargis, Virginie Millien, Neal Woodman, Link E. Olson
Software Mentions: 4
Published: almost 7 years ago

10.1186/1471-2164-15-989

Evaluation of viral genome assembly and diversity estimation in deep metagenomes
Cited by: 31
Author(s): Daniel Aguirre de Cárcer, Florent E. Angly, Antonio Alcamı́
Software Mentions: 4
Published: almost 11 years ago

10.1371/journal.pone.0226619

Lowbush blueberry fruit yield and growth response to inorganic and organic N-fertilization when competing with two common weed species
Cited by: 6
Author(s): Charles Marty, Josée-Anne Lévesque, Robert L. Bradley, Jean Lafond, Maxime C. Paré
Software Mentions: 4
Published: almost 5 years ago

10.1111/eva.12855

Assessing the potential for assisted gene flow using past introduction of Norway spruce in southern Sweden: Local adaptation and genetic basis of quantitative traits in trees
Cited by: 32
Author(s): Pascal Milesi, Mats Berlin, Jun Chen, Marion Orsucci, Lili Li, Gunnar Jansson, Bo Karlsson, Martin Lascoux
Software Mentions: 4
Published: over 5 years ago

10.1038/srep08397

Diversity in gut bacterial community of school-age children in Asia
Cited by: 189
Author(s): Jiro Nakayama, Koichi Watanabe, Jiahui Jiang, Kazunori Matsuda, Shiou Huei Chao, Pri Haryono, Orawan La-ongkham, Martinus Agus Sarwoko, I Nengah Sujaya, Liang Zhao, Kang Ting Chen, Yen Po Chen, Hsueh Hui Chiu, Tomoko Hidaka, Na Huang, Chikako Kiyohara, Takashi Kurakawa, Naoshige Sakamoto, Kenji Sonomoto, Kousuke Tashiro, Hirokazu Tsuji, Ming Ju Chen, Vichai Leelavatcharamas, Chii Cherng Liao, Sunee Nitisinprasert, Endang Sri Rahayu, Fa Zheng Ren, Yao‐Chou Tsai, Yuan Kun Lee
Software Mentions: 4
Published: over 9 years ago

10.1038/s41598-017-00166-z

Environmental filtering structures tree functional traits combination and lineages across space in tropical tree assemblages
Cited by: 33
Author(s): Mengesha Asefa, Min Cao, Guocheng Zhang, Xiuqin Ci, Jie Li, Jie Yang
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.pone.0070219

Can Yeast (S. cerevisiae) Metabolic Volatiles Provide Polymorphic Signaling?
Cited by: 28
Author(s): J. Roman Arguello, Carolina Sellanes, Yann‐Ru Lou, Robert A. Raguso
Software Mentions: 4
Published: over 11 years ago

10.1111/eva.12463

Plasticity in gene transcription explains the differential performance of two invasive fish species
Cited by: 47
Author(s): Kyle Wellband, Daniel D. Heath
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.pone.0204208

Testing optimal methods to compare horse postures using geometric morphometrics
Cited by: 8
Author(s): Emilie Sénèque, Stéphane Morisset, Clémence Lesimple, Martine Hausberger
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pone.0130151

Using Plant Functional Traits and Phylogenies to Understand Patterns of Plant Community Assembly in a Seasonal Tropical Forest in Lao PDR
Cited by: 20
Author(s): Manichanh Satdichanh, Jérôme Millet, Andreas Heinimann, Khamseng Nanthavong, Rhett D. Harrison
Software Mentions: 4
Published: over 9 years ago

10.1002/ece3.2691

Multifunctionality is affected by interactions between green roof plant species, substrate depth, and substrate type
Cited by: 37
Author(s): Yann Dusza, Sébastien Barot, Yvan Kraepiel, Jean‐Christophe Lata, Luc Abbadie, Xavier Raynaud
Software Mentions: 4
Published: over 7 years ago

10.1186/s40168-017-0370-7

The Inuit gut microbiome is dynamic over time and shaped by traditional foods
Cited by: 43
Author(s): Geneviève Dubois, Catherine Girard, François‐Joseph Lapointe, B. Jesse Shapiro
Software Mentions: 4
Published: about 7 years ago

10.1002/ece3.6973

Morphometric and genetic evidence for four species of gentoo penguin
Cited by: 10
Author(s): Joshua Tyler, Matthew T. Bonfitto, Gemma V. Clucas, Srinivas K. Reddy, Jane L. Younger
Software Mentions: 4
Published: about 4 years ago

10.1371/journal.pone.0044019

Mapping Functional Traits: Comparing Abundance and Presence-Absence Estimates at Large Spatial Scales
Cited by: 29
Author(s): Tim Newbold, Stuart H. M. Butchart, Çağan H. Şekercioğlu, Drew W. Purves, Jörn P. W. Scharlemann
Software Mentions: 4
Published: about 12 years ago

10.1002/ece3.7447

The impact of aquaculture on the genetics and distribution of the onuphid annelid Diopatra biscayensis
Cited by: 2
Author(s): Matthew P. Galaska, David S. Wethey, Andrés Arias, Stanislas F. Dubois, Kenneth M. Halanych, Sarah A. Woodin
Software Mentions: 4
Published: over 3 years ago

10.1038/s42003-021-02587-z

Probiotic Bifidobacterium longum supplied with methimazole improved the thyroid function of Graves’ disease patients through the gut-thyroid axis
Cited by: 14
Author(s): Dongxue Huo, Chaoping Cen, Haibo Chang, Qianying Ou, Shuaiming Jiang, Pan Yingjie, Kaining Chen, Jiachao Zhang
Software Mentions: 4
Published: about 3 years ago

10.1186/s40851-015-0013-4

Spatial and temporal variation at major histocompatibility complex class IIB genes in the endangered Blakiston’s fish owl
Cited by: 18
Author(s): Tetsuo I. Kohyama, Keita Omote, Chizuko Nishida, Takeshi Takenaka, Keisuke Saito, Satoshi Fujimoto, Ryuichi Masuda
Software Mentions: 4
Published: over 9 years ago

10.1186/s40478-021-01232-4

Metabolic and transcriptomic profiles of glioblastoma invasion revealed by comparisons between patients and corresponding orthotopic xenografts in mice
Cited by: 5
Author(s): Cristina Cudalbu, Pierre Bady, Marta Lai, Lijing Xin, Olga Gusyatiner, Marie‐France Hamou, Mario Lepore, Jean‐Philippe Brouland, Roy Thomas Daniel, Andreas F. Hottinger, Monika E. Hegi
Software Mentions: 4
Published: over 3 years ago

10.1098/rsos.150497

Parental influence on begging call structure in zebra finches ( Taeniopygia guttata ): evidence of early vocal plasticity
Cited by: 16
Author(s): Avelyne S. Villain, Ingrid C. A. Boucaud, Colette Bouchut, Clémentine Vignal
Software Mentions: 4
Published: about 9 years ago

10.1371/journal.pone.0220327

Population genetic structure of Bemisia tabaci MED (Hemiptera: Aleyrodidae) in Korea
Cited by: 7
Author(s): Yujeong Park, Hye Yeong Nam, Sunghoon Baek, Si Hyeock Lee, Joon-Ho Lee
Software Mentions: 3
Published: over 5 years ago

10.1186/s12915-019-0715-8

The intestinal microbiota regulates host cholesterol homeostasis
Cited by: 114
Author(s): Tiphaine Le Roy, Emelyne Lécuyer, Benoît Chassaing, Moez Rhimi, Marie Lhomme, Samira Boudebbouze, Farid Ichou, Júlia Haro Barceló, Thierry Huby, Maryse Guérin, Philippe Giral, Emmanuelle Maguin, Nathalie Kapel, Philippe Gérard, Karine Clément, Philippe Lesnik
Software Mentions: 3
Published: almost 5 years ago

10.1099/mgen.0.000144

Deciphering the unexplored Leptospira diversity from soils uncovers genomic evolution to virulence
Cited by: 75
Author(s): Roman Thibeaux, Gregorio Iraola, Ignacio Ferrés, Emilie Bierque, Dominique Girault, Marie‐Estelle Soupé‐Gilbert, Mathieu Picardeau, Cyrille Goarant
Software Mentions: 3
Published: almost 7 years ago

10.1002/ece3.4688

High genomic diversity and candidate genes under selection associated with range expansion in eastern coyote (Canis latrans ) populations
Cited by: 20
Author(s): Elizabeth Heppenheimer, Kristin E. Brzeski, Joseph W. Hinton, Brent R. Patterson, Linda Y. Rutledge, Alexandra L. DeCandia, Tyler Wheeldon, Steven R. Fain, Paul A. Hohenlohe, Roland Kays, Bradley N. White, Michael J. Chamberlain, Bridgett M. vonHoldt
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pone.0131413

Comparative Metagenomic Profiling of Symbiotic Bacterial Communities Associated with Ixodes persulcatus, Ixodes pavlovskyi and Dermacentor reticulatus Ticks
Cited by: 40
Author(s): Alexander Kurilshikov, Н. Н. Ливанова, Н. В. Фоменко, Alexey E. Tupikin, В. А. Рар, Мarsel R. Kabilov, С. Г. Ливанов, Nina Tikunova
Software Mentions: 3
Published: over 9 years ago

10.1371/journal.pone.0132801

Once upon Multivariate Analyses: When They Tell Several Stories about Biological Evolution
Cited by: 16
Author(s): Sabrina Renaud, Anne‐Béatrice Dufour, Emilie A. Hardouin, Ronan Ledevin, Jean‐Christophe Auffray
Software Mentions: 3
Published: over 9 years ago

10.1186/s13568-021-01191-y

Characterization and comparison of the bacterial community between complete intensive and extensive feeding patterns in pigs
Cited by: 3
Author(s): Xinjian Li, Mingyu Wang, Yansong Xue, Dongdong Duan, Cong Liu, Jianwei Ye, Xuelei Han, Ruimin Qiao, Kejun Wang
Software Mentions: 3
Published: over 3 years ago

10.1002/ece3.4357

Expected impacts of climate change threaten the anuran diversity in the Brazilian hotspots
Cited by: 19
Author(s): T. Vasconcelos, Bruno Tayar Marinho do Nascimento, Vitor Hugo Mendonça do Prado
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.ppat.1009138

Population genomics of the pathogenic yeast Candida tropicalis identifies hybrid isolates in environmental samples
Cited by: 28
Author(s): Caoimhe E. O’Brien, João Oliveira-Pacheco, Eoin Ó Cinnéide, Max A. B. Haase, Chris Todd Hittinger, Thomas R. Rogers, Óscar Zaragoza, Ursula Bond, Geraldine Butler
Software Mentions: 3
Published: over 3 years ago

10.1186/s13099-018-0281-6

Alteration in gut microbiota associated with hepatitis B and non-hepatitis virus related hepatocellular carcinoma
Cited by: 109
Author(s): Qisha Liu, Liancheng Fan, Yaoyao Zhuang, Jian Xu, Jianwei Wang, Xuhua Mao, Yewei Zhang, Xingyin Liu
Software Mentions: 3
Published: almost 6 years ago

10.1038/s41437-020-0344-6

Oceanographic features and limited dispersal shape the population genetic structure of the vase sponge Ircinia campana in the Greater Caribbean
Cited by: 7
Author(s): Sarah M. Griffiths, Mark J. Butler, Donald C. Behringer, Thierry Pérez, Richard F. Preziosi
Software Mentions: 3
Published: over 4 years ago

10.1038/hdy.2014.31

Genome-wide analysis reveals the ancient and recent admixture history of East African Shorthorn Zebu from Western Kenya
Cited by: 47
Author(s): Mary Mbole-Kariuki, Tad S. Sonstegard, Alan Orth, Samuel M. Thumbi, Barend M. deC. Bronsvoort, Henry K. Kiara, Philip G. Toye, Ilana Conradie, Amy Jennings, Koos Coetzer, Mark E. J. Woolhouse, Olivier Hanotte, Miika Tapio
Software Mentions: 3
Published: over 10 years ago

10.1371/journal.pone.0213360

On the relative importance of space and environment in farmland bird community assembly
Cited by: 8
Author(s): Laura Henckel, Christine N. Meynard, Vincent Devictor, Nicolas Mouquet, Vincent Bretagnolle
Software Mentions: 3
Published: over 5 years ago

10.1186/s43008-020-00042-y

Distinct fungal communities associated with different organs of the mangrove Sonneratia alba in the Malay Peninsula
Cited by: 11
Author(s): Nicole Li Ying Lee, Danwei Huang, Zheng Bin Randolph Quek, Jen Nie Lee, Benjamin J. Wainwright
Software Mentions: 3
Published: about 4 years ago

10.1371/journal.pone.0213618

Division of labor and brain evolution in insect societies: Neurobiology of extreme specialization in the turtle ant Cephalotes varians
Cited by: 14
Author(s): Darcy G. Gordon, Alejandra Zelaya, Ignacio Arganda‐Carreras, Sara Arganda, James F. A. Traniello
Software Mentions: 3
Published: over 5 years ago

10.1093/gigascience/giz058

Disordered gut microbiota and alterations in metabolic patterns are associated with atrial fibrillation
Cited by: 103
Author(s): Kun Zuo, Jing Li, Kuibao Li, Chaowei Hu, Yuanfeng Gao, Mulei Chen, Roumu Hu, Ye Liu, Hongjie Chi, Hongjiang Wang, Yanwen Qin, Xiaoyan Liu, Shichao Li, Jun Cai, Jiu-Chang Zhong, Xinchun Yang
Software Mentions: 3
Published: over 5 years ago

10.3390/ani10101803

3D Geometric Morphometrics Reveals Convergent Character Displacement in the Central European Contact Zone between Two Species of Hedgehogs (Genus Erinaceus)
Cited by: 1
Author(s): Barbora Černá Bolfíková, Allowen Evin, Markéta Knitlová, Miroslava Loudová, Anna Sztencel-Jabłonka, Wiesław Bogdanowicz, Pavel Hulva
Software Mentions: 3
Published: about 4 years ago

10.1186/s40529-021-00314-9

Agricultural management practices influence the soil enzyme activity and bacterial community structure in tea plantations
Cited by: 13
Author(s): Yu-Pei Chen, Chia-Fang Tsai, Punchappady Devasya Rekha, Sudeep D. Ghate, Hsi‐Yuan Huang, Yi-Han Hsu, Li-Ling Liaw, Chiu-Chung Young
Software Mentions: 3
Published: over 3 years ago

10.1371/journal.pntd.0006928

Molecular genotyping, diversity studies and high-resolution molecular markers unveiled by microsatellites in Giardia duodenalis
Cited by: 6
Author(s): Maurício Durigan, Cláudio Benício Cardoso-Silva, Maisa Ciampi‐Guillardi, Guilherme Toledo-Silva, Gustavo Maruyama Mori, Regina Maura Bueno Franco, Anete Pereira de Souza
Software Mentions: 3
Published: almost 6 years ago

10.1186/s12711-021-00636-z

Assessment of trade-offs between feed efficiency, growth-related traits, and immune activity in experimental lines of layer chickens
Cited by: 18
Author(s): Tatiana Zerjal, Sonja Härtle, David Gourichon, Vanaïque Guillory, Nicolas Bruneau, Dénis Laloë, Marie-Hélène Pinard-van Der Laan, Sascha Trapp, Bertrand Bed’Hom, Pascale Quéré
Software Mentions: 3
Published: over 3 years ago

10.3390/genes12081279

Population Genomics Reveals Gene Flow and Adaptive Signature in Invasive Weed Mikania micrantha
Cited by: 0
Author(s): Xiaoxian Ruan, Zhen Wang, Yingjuan Su, Ting Wang
Software Mentions: 3
Published: over 3 years ago

10.1002/ece3.6789

Morphological diversity and ecological niche divergence in goitered and sand gazelles
Cited by: 5
Author(s): Mahmoud‐Reza Hemami, R. Khosravi, Colin P. Groves, Mohsen Ahmadi
Software Mentions: 3
Published: about 4 years ago

10.1186/s13068-020-01740-w

Metabolic regulation of ethanol-type fermentation of anaerobic acidogenesis at different pH based on transcriptome analysis of Ethanoligenens harbinense
Cited by: 7
Author(s): Zhen Li, Yu Lou, Jie Ding, Bingfeng Liu, Guo-Jun Xie, Nanqi Ren, Defeng Xing
Software Mentions: 3
Published: over 4 years ago

10.1186/s12862-017-0930-2

Tripartite species interaction: eukaryotic hosts suffer more from phage susceptible than from phage resistant bacteria
Cited by: 26
Author(s): Carolin Charlotte Wendling, Agnes Piecyk, Dominik Refardt, Cynthia Maria Chibani, Robert Hertel, Heiko Liesegang, Boyke Bunk, Jörg Overmann, Olivia Roth
Software Mentions: 3
Published: over 7 years ago

10.1093/gbe/evz113

Genome-wide SNP Data Reveal an Overestimation of Species Diversity in a Group of Hawkmoths
Cited by: 35
Author(s): Anna K. Hundsdoerfer, Kyung Min Lee, Ian J. Kitching, Marko Mutanen
Software Mentions: 3
Published: over 5 years ago

10.1186/s12862-015-0413-2

Beringian sub-refugia revealed in blackfish (Dallia): implications for understanding the effects of Pleistocene glaciations on Beringian taxa and other Arctic aquatic fauna
Cited by: 10
Author(s): Matthew A. Campbell, Naoki Takebayashi, J. Andrés López
Software Mentions: 3
Published: over 9 years ago

10.1371/journal.pbio.3001185

Signatures of optimal codon usage in metabolic genes inform budding yeast ecology
Cited by: 18
Author(s): Abigail L. LaBella, Dana A. Opulente, Jacob L. Steenwyk, Chris Todd Hittinger, Antonis Rokas
Software Mentions: 3
Published: over 3 years ago

10.3389/fpls.2018.01677

Transgenerational Effects and Epigenetic Memory in the Clonal Plant Trifolium repens
Cited by: 66
Author(s): Alejandra Pilar Rendina González, Veronica Preite, Koen Verhoeven, Vít Latzel
Software Mentions: 3
Published: about 6 years ago

10.1371/journal.pbio.2005099

Evolution of mitotic spindle behavior during the first asymmetric embryonic division of nematodes
Cited by: 20
Author(s): Aurore-Cécile Valfort, Caroline Launay, Marie Sémon, Marie Delattre
Software Mentions: 3
Published: almost 7 years ago

10.1155/2020/4673250

Changes in Gut Microorganism in Patients with Positive Immune Antibody-Associated Recurrent Abortion
Cited by: 4
Author(s): Min Jin, Dong Li, Rui Ji, Wen Liu, Xiaofei Xu, Xin Feng
Software Mentions: 3
Published: about 4 years ago

10.1186/s12859-019-3187-5

Impact of quality trimming on the efficiency of reads joining and diversity analysis of Illumina paired-end reads in the context of QIIME1 and QIIME2 microbiome analysis frameworks
Cited by: 51
Author(s): Attayeb Mohsen, Jonguk Park, Yi‐An Chen, Hitoshi Kawashima, Kenji Mizuguchi
Software Mentions: 3
Published: about 5 years ago

10.7717/peerj.2764

Life history and past demography maintain genetic structure, outcrossing rate, contemporary pollen gene flow of an understory herb in a highly fragmented rainforest
Cited by: 3
Author(s): Pilar Suárez-Montes, Mariana Chávez‐Pesqueira, Juan Núñez‐Farfán
Software Mentions: 3
Published: almost 8 years ago

10.7717/peerj.10302

Characterization and comparison of the bacterial communities of rhizosphere and bulk soils from cadmium-polluted wheat fields
Cited by: 12
Author(s): Li Song, Zhenzhi Pan, Yi Dai, Lin Chen, Li Zhang, Qilin Liao, Xi Yu, Hongyan Guo, Guisheng Zhou
Software Mentions: 3
Published: about 4 years ago

10.1186/1752-0509-8-S2-S4

Integrative omics analysis. A study based on Plasmodium falciparum mRNA and protein data
Cited by: 12
Author(s): Oana Tomescu, Diethard Mattanovich, Gerhard Thallinger
Software Mentions: 3
Published: over 10 years ago

10.1002/ece3.83

Reef fish hybridization: lessons learnt from butterflyfishes (genus Chaetodon)
Cited by: 56
Author(s): Stefano R. Montanari, Lynne van Herwerden, Morgan S. Pratchett, Jean‐Paul A. Hobbs, Anneli Fugedi
Software Mentions: 3
Published: almost 13 years ago

10.3389/fpls.2021.517547

Genetic Diversity and Population Structure in Bryophyte With Facultative Nannandry
Cited by: 2
Author(s): Annick S. Lang, Thies Gehrmann, Nils Cronberg
Software Mentions: 3
Published: over 3 years ago

10.3390/cancers13081903

Circular RNA in Chemonaive Lymph Node Negative Colon Cancer Patients
Cited by: 0
Author(s): I. van den Berg, Marcel Smid, Robert R.J. Coebergh van den Braak, Carolien H.M. van Deurzen, Vanja de Weerd, John A. Foekens, Jan N.M. IJzermans, John W.M. Martens, Saskia M. Wilting
Software Mentions: 3
Published: over 3 years ago

10.3390/ani10122276

First Insights into the Population Genetic Structure and Heterozygosity–Fitness Relationship in Roe Deer Inhabiting the Area between the Alps and Dinaric Mountains
Cited by: 4
Author(s): Elena Bužan, Urška Gerič, Sandra Potušek, Katarina Flajšman, Boštjan Pokorny
Software Mentions: 3
Published: almost 4 years ago

10.1002/ece3.4278

Population structure of a vector of human diseases: Aedes aegypti in its ancestral range, Africa
Cited by: 53
Author(s): Panayiota Kotsakiozi, Benjamin R. Evans, Andrea Gloria‐Soria, Basile Kamgang, Martin N. Mayanja, Julius J. Lutwama, Gilbert Le Goff, Diégo Ayala, Christophe Paupy, Athanase Badolo, João Pinto, Carla A. Sousa, Arlete D. Troco, Jeffrey R. Powell
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0175735

Indirect effect of temperature on fish population abundances through phenological changes
Cited by: 31
Author(s): Lucie Kuczynski, Mathieu Chevalier, Pascal Laffaille, Marion Legrand, Gaël Grenouillet
Software Mentions: 3
Published: over 7 years ago

10.7717/peerj.3552

Landscape metrics as functional traits in plants: perspectives from a glacier foreland
Cited by: 4
Author(s): Tommaso Sitzia, Matteo Dainese, Bertil Krüsi, Duncan McCollin
Software Mentions: 3
Published: over 7 years ago

10.1371/journal.pone.0118501

Adaptive Differentiation in Seedling Traits in a Hybrid Pine Species Complex, Pinus densata and Its Parental Species, on the Tibetan Plateau
Cited by: 4
Author(s): Jianghong Meng, Jian‐Feng Mao, Zhao Wang, Fangqian Xing, Xinyu Chen, Hao Liu, Zhen Xing, Xiaoru Wang, Yue Li
Software Mentions: 3
Published: over 9 years ago

10.1016/j.gpb.2020.06.011

Classification of the Gut Microbiota of Patients in Intensive Care Units During Development of Sepsis and Septic Shock
Cited by: 28
Author(s): Wanglin Liu, Mingyue Cheng, Jinman Li, Peng Zhang, Hang Fan, Qinghe Hu, Maozhen Han, Longxiang Su, Huaiwu He, Yigang Tong, Kang Ning, Yun Long
Software Mentions: 3
Published: almost 4 years ago

10.3389/fnins.2020.00127

Case-Control Study of the Effects of Gut Microbiota Composition on Neurotransmitter Metabolic Pathways in Children With Attention Deficit Hyperactivity Disorder
Cited by: 56
Author(s): Lin Wan, Wen-Rong Ge, Shan Zhang, Yulin Sun, Bin Wang, Guang Yang
Software Mentions: 3
Published: almost 5 years ago

10.1371/journal.pone.0058005

Gut Microbiota Patterns Associated with Colonization of Different Clostridium difficile Ribotypes
Cited by: 60
Author(s): Jure Škraban, Sašo Džeroski, Bernard Ženko, Domen Mongus, Simon Gangl, Maja Rupnik
Software Mentions: 3
Published: over 11 years ago

10.7717/peerj.9187

Application of High Resolution Melt analysis (HRM) for screening haplotype variation in a non-model plant genus: Cyclopia (Honeybush)
Cited by: 8
Author(s): Nicholas C. Galuszynski, Alastair J. Potts
Software Mentions: 3
Published: over 4 years ago

10.1186/s12862-014-0269-x

Phenotype and animal domestication: A study of dental variation between domestic, wild, captive, hybrid and insular Sus scrofa
Cited by: 60
Author(s): Allowen Evin, Keith Dobney, Renate Schafberg, Joseph Owen, Una Strand Viðarsdóttir, Greger Larson, Thomas Cucchi
Software Mentions: 3
Published: almost 10 years ago

10.1002/ece3.1604

Early subtropical forest growth is driven by community mean trait values and functional diversity rather than the abiotic environment
Cited by: 41
Author(s): Wenzel Kröber, Ying Liu, Werner Härdtle, Keping Ma, Bernhard Schmid, Karsten Schmidt, Thomas Scholten, Gunnar Seidler, Goddert von Oheimb, Erik Welk, Christian Wirth, Helge Bruelheide
Software Mentions: 3
Published: over 9 years ago

10.3389/fpls.2020.568009

Root Morphological Traits of Seedlings Are Predictors of Seed Yield and Quality in Winter Oilseed Rape Hybrid Cultivars
Cited by: 12
Author(s): Julien Louvieaux, Martin Spanoghe, Christian Hermans
Software Mentions: 3
Published: about 4 years ago

10.1371/journal.pone.0067463

Trypanosoma cruzi Infection in Neotropical Wild Carnivores (Mammalia: Carnivora): At the Top of the T. cruzi Transmission Chain
Cited by: 71
Author(s): Fabiana Lopes Rocha, André Luiz Rodrigues Roque, Juliane Saab de Lima, Carolina Carvalho Cheida, Frederico Gemesio Lemos, Fernanda Cavalcanti de Azevedo, Ricardo Corassa Arrais, Daniele Bilac, Heitor Miraglia Herrera, Guilherme Mourão, Ana María Jansen
Software Mentions: 3
Published: over 11 years ago

10.7717/peerj.786

Nucleotide variation and balancing selection at theCkmagene in Atlantic cod: analysis with multiple merger coalescent models
Cited by: 45
Author(s): Einar Árnason, Katrín Halldórsdóttir
Software Mentions: 3
Published: over 9 years ago

10.1002/ece3.2680

Time-restricted flight ability influences dispersal and colonization rates in a group of freshwater beetles
Cited by: 16
Author(s): Lars Iversen, Riinu Rannap, Lars Briggs, Kaj Sand‐Jensen
Software Mentions: 3
Published: almost 8 years ago

10.1186/s12870-019-2122-2

Target sequencing reveals genetic diversity, population structure, core-SNP markers, and fruit shape-associated loci in pepper varieties
Cited by: 29
Author(s): Heshan Du, Jingjing Yang, Bin Chen, Xiaofen Zhang, Jian Zhang, Kun Yang, Sansheng Geng, Changlong Wen
Software Mentions: 3
Published: almost 5 years ago

10.3389/fpls.2021.692463

Genome-Wide Assessment of Population Structure and Genetic Diversity of the Global Finger Millet Germplasm Panel Conserved at the ICRISAT Genebank
Cited by: 3
Author(s): C. Backiyalakshmi, Mani Vetriventhan, Santosh Deshpande, C. Babu, Victor Allan, D. Naresh, Rajeev Gupta, V. C. R. Azevedo
Software Mentions: 3
Published: over 3 years ago

10.1371/journal.pone.0074914

A New Method for Extracting Skin Microbes Allows Metagenomic Analysis of Whole-Deep Skin
Cited by: 21
Author(s): Marc García-Garcerá, Koldo Garcia-Etxebarria, Mireia Coscollá, Amparo Latorre, Francesc Calafell
Software Mentions: 3
Published: about 11 years ago

10.3389/fmicb.2015.00970

French invasive Asian tiger mosquito populations harbor reduced bacterial microbiota and genetic diversity compared to Vietnamese autochthonous relatives
Cited by: 73
Author(s): Guillaume Minard, Florence‐Hélène Tran, Van Trân Van, Clément Goubert, Christophe Bellet, Grégory L’Ambert, Khanh Ly Huynh Kim, Trang Huynh Thi Thuy, Patrick Mavingui, Claire Valiente Moro
Software Mentions: 3
Published: about 9 years ago

10.1371/journal.pone.0164814

Anthropogenic Matrices Favor Homogenization of Tree Reproductive Functions in a Highly Fragmented Landscape
Cited by: 7
Author(s): Magda Silva Carneiro, Caroline Cambraia Furtado Campos, Luiz Alberto Beijo, Flávio Nunes Ramos
Software Mentions: 3
Published: about 8 years ago

10.1186/1471-2105-14-178

Exploring the transcription factor activity in high-throughput gene expression data using RLQ analysis
Cited by: 7
Author(s): Florent Baty, Jochen J. Rüdiger, Nicola Miglino, Lukas Kern, Pieter Borger, Martin Brutsche
Software Mentions: 3
Published: over 11 years ago

Projects: cran: ade4

Papers Mentioning ade4 809