cran: VennDiagram | Projects | Ecosyste.ms: Papers

10.3389/fonc.2021.711984

Regulatory Mechanism and Experimental Verification of Patchouli Alcohol on Gastric Cancer Cell Based on Network Pharmacology
Cited by: 8
Author(s): Yuzhi Song, Liang Chang, Xiaoyuan Wang, Bibo Tan, Jianbo Li, Jie Zhang, Fengbin Zhang, Lianmei Zhao, Guangjie Liu, Bingjie Huo
Software Mentions: 2
Published: about 3 years ago

10.1155/2017/8717369

Combined Transcriptomic Analysis Revealed AKR1B10 Played an Important Role in Psoriasis through the Dysregulated Lipid Pathway and Overproliferation of Keratinocyte
Cited by: 20
Author(s): Yunlu Gao, Yonggang Xie, Yangfeng Ding
Software Mentions: 2
Published: almost 8 years ago

10.7150/ijms.46378

Investigating the mechanism of ShuFeng JieDu capsule for the treatment of novel Coronavirus pneumonia (COVID-19) based on network pharmacology
Cited by: 21
Author(s): Xiao Chen, Yunhong Yin, Mengyu Zhang, Jianyu Liu, Rui Li, Yi-Qing Qu
Software Mentions: 2
Published: almost 5 years ago

10.3389/fonc.2021.637470

CMPK1 Regulated by miR-130b Attenuates Response to 5-FU Treatment in Gastric Cancer
Cited by: 7
Author(s): Huaizhu Chu, Nahui Han, Jianguo Xu
Software Mentions: 2
Published: over 3 years ago

10.3389/fgene.2020.00747

Identification of Ear Morphology Genes in Maize (Zea mays L.) Using Selective Sweeps and Association Mapping
Cited by: 7
Author(s): Ting Li, Jianzhou Qu, Xiaokang Tian, Yonghui Lao, Ningning Wang, Yahui Wang, Yinchuan Hao, Xinghua Zhang, Jiquan Xue, Shutu Xu
Software Mentions: 2
Published: over 4 years ago

10.3389/fcimb.2019.00246

Variability in Genomic and Virulent Properties of Porphyromonas gingivalis Strains Isolated From Healthy and Severe Chronic Periodontitis Individuals
Cited by: 16
Author(s): Katterinne N. Mendez, Anilei Hoare, Cristopher Soto, Isaac Maximiliano Bugueno, Marcela Olivera, Claudio Meneses, José M. Pérez-Donoso, Eduardo Castro-Nallar, Denisse Bravo
Software Mentions: 2
Published: over 5 years ago

10.1186/s12870-020-02341-3

Transcriptome analysis of responses in Brachypodium distachyon overexpressing the BdbZIP26 transcription factor
Cited by: 1
Author(s): Ruth C. Martin, Brent Kronmiller, James E. Dombrowski
Software Mentions: 2
Published: over 4 years ago

10.3389/fcell.2021.633195

DNA Topoisomerase 3α Is Involved in Homologous Recombination Repair and Replication Stress Response in Trypanosoma cruzi
Cited by: 7
Author(s): Héllida Marina Costa-Silva, Bruno Carvalho Resende, Adriana Castilhos Souza Umaki, Willian Andrade Prado, Marcelo Santos da Silva, Stela Virgílio, Andréa Mara Macedo, Sérgio Danilo Junho Pena, Erich Birelli Tahara, Luíz Ricardo Orsini Tosi, Maria Carolina Elias, Luciana O. Andrade, João Luís Reis-Cunha, Glória Regina Franco, Stênio Perdigão Fragoso, Carlos Renato Machado
Software Mentions: 2
Published: over 3 years ago

10.1002/fsn3.2366

Effects of thermal and nonthermal processing technology on the quality of red sour soup after storage
Cited by: 6
Author(s): Yangbo He, Yongfu Li, Luo Xingbang, Guolin Li, Duan Zhaoyan, Chao-Jun Chen
Software Mentions: 2
Published: over 3 years ago

10.1155/2020/2396569

Systematically Exploring the Antitumor Mechanisms of Core Chinese Herbs on Hepatocellular Carcinoma: A Computational Study
Cited by: 4
Author(s): Zhulin Wu, Li He, Lianan Wang, Lisheng Peng
Software Mentions: 2
Published: about 4 years ago

10.1002/ece3.4195

Untargeted metabolic profiling reveals geography as the strongest predictor of metabolic phenotypes of a cosmopolitan weed
Cited by: 21
Author(s): Natalie Iwanycki Ahlstrand, Nicoline Havskov Reghev, Bo Markussen, Hans Christian Bruun Hansen, Finnur Freyr Eiríksson, Margrét Þorsteinsdóttir, Nina Rønsted, Christopher J. Barnes
Software Mentions: 2
Published: over 6 years ago

10.1002/ece3.6790

Redefining floristic zones in the Korean Peninsula using high‐resolution georeferenced specimen data and self‐organizing maps
Cited by: 2
Author(s): Songhie Jung, Yong Chan Cho
Software Mentions: 2
Published: about 4 years ago

10.3389/fphar.2021.697704

Exploring the Potential Molecular Mechanism of Scutellaria baicalensis Georgi in the Treatment of Gastric Cancer Based on Network Pharmacological Analysis and Molecular Docking Technology
Cited by: 12
Author(s): Yi Tu, Qiong Wu, Jiarui He, Jiasheng Xu, Shasha Yu, Qingfei Wang, Yunqi Cheng, Qijun Yang, Shan Xu, Yi Cao
Software Mentions: 2
Published: over 3 years ago

10.3389/fphys.2017.00980

Co-expression Network Approach Reveals Functional Similarities among Diseases Affecting Human Skeletal Muscle
Cited by: 8
Author(s): Kavitha Mukund, Shankar Subramaniam
Software Mentions: 2
Published: almost 7 years ago

10.1016/j.csbj.2021.01.004

Maize specialized metabolome networks reveal organ-preferential mixed glycosides
Cited by: 13
Author(s): Sandrien Desmet, Yvan Saeys, Kevin Verstaen, Rébecca Dauwe, Hoon Kim, Claudiu Niculaes, Atsushi Fukushima, Geert Goeminne, Ruben Vanholme, John Ralph, Wout Boerjan, Kris Morreel
Software Mentions: 2
Published: almost 4 years ago

10.3389/fpls.2018.01662

Plant Nutrient Resource Use Strategies Shape Active Rhizosphere Microbiota Through Root Exudation
Cited by: 60
Author(s): Julien P. Guyonnet, Martin Guillemet, Audrey Dubost, Laurent Simon, Philippe Ortet, Mohamed Barakat, Thierry Heulin, Wafa Achouak, Feth el Zahar Haichar
Software Mentions: 2
Published: almost 6 years ago

10.3390/cancers12071739

Expression Patterns of Immune Genes Reveal Heterogeneous Subtypes of High-Risk Neuroblastoma
Cited by: 10
Author(s): Zhenqiu Liu, Christa N. Grant, Lidan Sun, Barbara A. Miller, Vladimir S. Spiegelman, Hong Gang Wang
Software Mentions: 2
Published: over 4 years ago

10.3390/ijerph17197101

Spatial Distribution of Toxic Metal(loid)s and Microbial Community Analysis in Soil Vertical Profile at an Abandoned Nonferrous Metal Smelting Site
Cited by: 17
Author(s): Jianhong Yang, Siqi Wang, Ziwen Guo, Yan Deng, Menglong Xu, Siyuan Zhang, Huaqun Yin, Yili Liang, Hongwei Liu, Bo Miao, Delong Meng, Xueduan Liu, Luhua Jiang
Software Mentions: 2
Published: about 4 years ago

10.3390/cancers13153917

Adipocytes Promote Breast Cancer Cell Survival and Migration through Autophagy Activation
Cited by: 7
Author(s): Dorine Bellanger, Cléa Dziagwa, Cyrille Guimaraes, Michelle Pinault, Jean‐François Dumas, Lucie Brisson
Software Mentions: 2
Published: over 3 years ago

10.3389/fpls.2015.01126

Comparative Genomics of Pathogenic and Nonpathogenic Strains of Xanthomonas arboricola Unveil Molecular and Evolutionary Events Linked to Pathoadaptation
Cited by: 67
Author(s): Sophie Cesbron, Martial Briand, Salwa Essakhi, Sophie Gironde, Tristan Boureau, Charles Manceau, Marion Fischer-Le Saux, Marie‐Agnès Jacques
Software Mentions: 2
Published: almost 9 years ago

10.3389/fpls.2021.725728

Integrated Genomic Analyses From Low-Depth Sequencing Help Resolve Phylogenetic Incongruence in the Bamboos (Poaceae: Bambusoideae)
Cited by: 3
Author(s): Domitille Chalopin, Lynn G. Clark, William P. Wysocki, Minkyu Park, Melvin R. Duvall, Jeffrey L. Bennetzen
Software Mentions: 2
Published: about 3 years ago

10.3389/fpls.2017.00271

Transcriptomic Analysis of Thermally Stressed Symbiodinium Reveals Differential Expression of Stress and Metabolism Genes
Cited by: 72
Author(s): Sarah L. Gierz, Sylvain Forêt, William Leggat
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0119420

In-Silico Analysis of Inflammatory Bowel Disease (IBD) GWAS Loci to Novel Connections
Cited by: 19
Author(s): Md Mesbah Uddin, Ramu Elango, Babajan Banaganapalli, Noor Ahmad Shaik, Fahad A. Al-Abbasi
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0052730

Pyrosequencing Investigation into the Bacterial Community in Permafrost Soils along the China-Russia Crude Oil Pipeline (CRCOP)
Cited by: 53
Author(s): Shuai Yang, Wen Xi, Huijun Jin, Qingbai Wu
Software Mentions: 2
Published: almost 12 years ago

10.1371/journal.pone.0156040

Deciphering the Molecular Variations of Pine Wood Nematode Bursaphelenchus xylophilus with Different Virulence
Cited by: 33
Author(s): Xiaolei Ding, Jian‐Ren Ye, Sixi Lin, Xiao‐Qin Wu, Dewei Li, Bo Nian
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0205948

HJURP antagonizes CENP-A mislocalization driven by the H3.3 chaperones HIRA and DAXX
Cited by: 38
Author(s): Jonathan Nye, David Sturgill, Rajbir K Athwal, Yamini Dalal
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pone.0207903

Characterization and variation of the rhizosphere fungal community structure of cultivated tetraploid cotton
Cited by: 12
Author(s): Qin Qiao, Jingxia Zhang, Changle Ma, Furong Wang, Yu Chen, Chuanyun Zhang, Hui Zhang, Jun Zhang
Software Mentions: 2
Published: about 5 years ago

10.1186/s12874-017-0302-z

Motivations for (non)participation in population-based health studies among the elderly – comparison of participants and nonparticipants of a prospective study on influenza vaccination
Cited by: 16
Author(s): Manas K. Akmatov, Leonhard Jentsch, Peggy Riese, Marcus May, Malik W. Ahmed, Damaris Werner, Anja Rösel, Jana Prokein, Inga Bernemann, Norman Klopp, Blair Prochnow, Thomas Illig, Christoph Schindler, Carlos A. Guzmán, Frank Peßler
Software Mentions: 2
Published: almost 8 years ago

10.1371/journal.pone.0202305

Bioinformatic characterisation of the effector repertoire of the strawberry pathogen Phytophthora cactorum
Cited by: 30
Author(s): Andrew D. Armitage, Erik Lysøe, Charlotte F. Nellist, Laura Lewis, Liliana Cano, Richard J. Harrison, May Bente Brurberg
Software Mentions: 2
Published: about 6 years ago

10.1186/s12920-020-00810-0

Identification of intestinal flora-related key genes and therapeutic drugs in colorectal cancer
Cited by: 4
Author(s): Jiayu Zhang, Huaiyu Zhang, Faping Li, Zheyu Song, Yezhou Li, Tong Zhao
Software Mentions: 2
Published: about 4 years ago

10.1186/s41065-021-00190-0

Bioinformatics analysis of differentially expressed genes and identification of an miRNA–mRNA network associated with entorhinal cortex and hippocampus in Alzheimer’s disease
Cited by: 4
Author(s): Haoming Li, Lin Zou, Jinhong Shi, Xiao Han
Software Mentions: 2
Published: over 3 years ago

10.1038/hortres.2017.79

Divergent evolutionary patterns of the MAPK cascade genes in Brassica rapa and plant phylogenetics
Cited by: 20
Author(s): Peng Wu, Wenli Wang, Ying Liu, Xilin Hou
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41438-020-0253-0

Preferential gene retention increases the robustness of cold regulation in Brassicaceae and other plants after polyploidization
Cited by: 37
Author(s): Xiaoming Song, Jinpeng Wang, Pengchuan Sun, Xiao Ma, Qing Yang, Jingjing Hu, Shiqun Sun, Yuxian Li, Jigao Yu, Shuyan Feng, Qiaoying Pei, Tong Yu, Ning Yang, Yinzhe Liu, Xiuqing Li, Andrew H. Paterson, Xiyin Wang
Software Mentions: 2
Published: over 4 years ago

10.1128/IAI.00311-19

Identification of Potential Cerebrospinal Fluid Biomarkers To Discriminate between Infection and Sterile Inflammation in a Rat Model of Staphylococcus epidermidis Catheter Infection
Cited by: 5
Author(s): Gwenn Skar, Matthew Beaver, Amy Aldrich, Dragana Lagundžin, Ishwor Thapa, Nicholas T. Woods, Hesham Ali, Jessica Snowden, Tammy Kielian
Software Mentions: 2
Published: about 5 years ago

10.1186/s12920-019-0473-z

Identification of biomarkers for amyotrophic lateral sclerosis by comprehensive analysis of exosomal mRNAs in human cerebrospinal fluid
Cited by: 54
Author(s): Kentaro Otake, Hidenori Kamiguchi, Yoshihiko Hirozane
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0200007

Changes in rhizosphere microbial communities in potted cucumber seedlings treated with syringic acid
Cited by: 22
Author(s): Zhilin Wang, Jianhui Zhang, Fengzhi Wu, Xingang Zhou
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0237951

Comparative study on three viral enrichment approaches based on RNA extraction for plant virus/viroid detection using high-throughput sequencing
Cited by: 32
Author(s): Yahya Z. A. Gaafar, Heiko Ziebell
Software Mentions: 2
Published: about 4 years ago

10.1371/journal.pone.0173954

Single nucleotide variants and InDels identified from whole-genome re-sequencing of Guzerat, Gyr, Girolando and Holstein cattle breeds
Cited by: 42
Author(s): Nedenia Bonvino Stafuzza, Adhemar Zerlotini, Francisco Pereira Lobo, M. E. B. Yamagishi, T.C.S. Chud, Alexandre Rodrigues Caetano, Danísio Prado Munari, Dorian J. Garrick, M. A. Machado, Marta Fonseca Martins, Maria Raquel Carvalho, John B. Cole, Marcos Vinícius Gualberto Barbosa da Silva
Software Mentions: 2
Published: over 7 years ago

10.1016/j.chroma.2016.04.040

Analysis of polar urinary metabolites for metabolic phenotyping using supercritical fluid chromatography and mass spectrometry
Cited by: 56
Author(s): Arundhuti Sen, Christopher S. Knappy, Matthew R. Lewis, Robert S. Plumb, Ian D. Wilson, Jeremy K. Nicholson, Norman W. Smith
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0128272

Culture-Dependent and -Independent Methods Capture Different Microbial Community Fractions in Hydrocarbon-Contaminated Soils
Cited by: 143
Author(s): Franck Stefani, Terrence H. Bell, Charlotte Marchand, Ivan E. de la Providencia, Abdel El Yassimi, Marc St‐Arnaud, Mohamed Hijri
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0070405

The Conservation and Management of Tunas and Their Relatives: Setting Life History Research Priorities
Cited by: 30
Author(s): Maria José Juan‐Jordá, Iago Mosqueira, Juan Freire, Nicholas K. Dulvy
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pone.0208014

The Bos taurus maternal microbiome: Role in determining the progeny early-life upper respiratory tract microbiome and health
Cited by: 28
Author(s): Svetlana Lima, M.L.S. Bicalho, R.C. Bicalho
Software Mentions: 2
Published: over 5 years ago

10.1186/s40813-020-00166-y

Quantification, description and international comparison of antimicrobial use on Irish pig farms
Cited by: 14
Author(s): Lorcan O’Neill, Maria Rodrigues da Costa, Finola C. Leonard, J. F. Gibbons, Julia Adriana Calderón Díaz, Gerard McCutcheon, Edgar García Manzanilla
Software Mentions: 2
Published: about 4 years ago

10.1186/s12864-018-5112-0

Genomic comparison of Trypanosoma conorhini and Trypanosoma rangeli to Trypanosoma cruzi strains of high and low virulence
Cited by: 14
Author(s): Katie R. Bradwell, Vishal N. Kopardé, Andrey V. Matveyev, Myrna G. Serrano, João M. P. Alves, Hardik I. Parikh, Bernice Huang, Vladimir Lee, Oneida Espinosa-Álvarez, Paola A. Ortíz, André G. Costa-Martins, Marta Maria Geraldes Teixeira, Gregory A. Buck
Software Mentions: 2
Published: about 6 years ago

10.2196/19694

Exploring the Health-Related Quality of Life of Patients Treated With Immune Checkpoint Inhibitors: Social Media Study
Cited by: 10
Author(s): François-Emery Cotté, Paméla Voillot, Bryan Bennett, Bruno Falissard, Christophe Tzourio, Pierre Foulquié, Anne-Françoise Gaudin, H. Lemasson, V. Grumberg, Laura McDonald, Carole Faviez, Stéphane Schück
Software Mentions: 1
Published: about 4 years ago

10.1186/s12935-019-0763-8

Identification of aberrantly methylated differentially expressed genes in prostate carcinoma using integrated bioinformatics
Cited by: 15
Author(s): Kai Wu, Xin Yin, Yipeng Jin, Fangfang Liu, Jiangping Gao
Software Mentions: 1
Published: over 5 years ago

10.18632/aging.103244

Circular RNA hsa_circ_0003141 promotes tumorigenesis of hepatocellular carcinoma via a miR-1827/UBAP2 axis
Cited by: 17
Author(s): Yong Wang, Rongfen Gao, Jinpeng Li, Shaotao Tang, Shuai Li, Qiangsong Tong, Yina Mao
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-69623-6

Control of Fusarium wilt by wheat straw is associated with microbial network changes in watermelon rhizosphere
Cited by: 19
Author(s): Lili Tang, Ye Xia, Chao Fan, Jinming Kou, Fengzhi Wu, Wenhui Li, Kaiwen Pan
Software Mentions: 1
Published: over 4 years ago

10.1186/s12711-017-0295-4

Genome-wide detection of genetic markers associated with growth and fatness in four pig populations using four approaches
Cited by: 42
Author(s): Yuanmei Guo, Yixuan Huang, Lijuan Hou, Junwu Ma, Congying Chen, Huashui Ai, Lusheng Huang, Jun Ren
Software Mentions: 1
Published: almost 8 years ago

10.1186/s12866-019-1501-z

Dynamics of fungal communities during Gastrodia elata growth
Cited by: 24
Author(s): Chinho Lin, Yuchuan Wang, Li-Yuan Qin, He Huang, Xian-Lun Yu, Mingzhi Yang, Hanbo Zhang
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0218723

Long-term effects of prior diets, dietary transition and pregnancy on adipose gene expression in dairy heifers
Cited by: 2
Author(s): Hilde Kristine Lyby Wærp, Sinéad M. Waters, Matthew S. McCabe, Paul Cormican, Ragnar Salte
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0231834

Proteomic analysis of infected primary human leucocytes revealed PSTK as potential treatment-monitoring marker for active and latent tuberculosis
Cited by: 3
Author(s): Benjawan Kaewseekhao, Sittiruk Roytrakul, Yodying Yingchutrakul, Kanin Salao, Wipa Reechaipichitkul, Kiatichai Faksri
Software Mentions: 1
Published: over 4 years ago

10.1042/BSR20190083

Identification and analysis of genes associated with papillary thyroid carcinoma by bioinformatics methods
Cited by: 13
Author(s): Shulong Zhang, Quan Wang, Qin Han, Huazhong Han, Peng Lu
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0194088

Genomic insights into the broad antifungal activity, plant-probiotic properties, and their regulation, in Pseudomonas donghuensis strain SVBP6
Cited by: 29
Author(s): Betina Cecilia Agaras, Andrés Iriarte, Claudio Valverde
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0252344

Genomic relevance of FGF14 and associated genes on the prognosis of pancreatic cancer
Cited by: 3
Author(s): Aroosha Raja, Muhammad Ehsan Malik, Farhan Haq
Software Mentions: 1
Published: over 3 years ago

10.1155/2017/5157626

RNA-Seq Based Transcriptome Analysis of the Type I Interferon Host Response upon Vaccinia Virus Infection of Mouse Cells
Cited by: 6
Author(s): Bruno Hernáez, Graciela Alonso, Juan Manuel Alonso-Lobo, Alberto Rastrojo, Cornelius Fischer, Sascha Sauer, Begoña Aguado, Antonio Alcamı́
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0161667

Transcriptome Characterization of Dendrolimus punctatus and Expression Profiles at Different Developmental Stages
Cited by: 18
Author(s): Chungang Yang, Pengcheng Yang, Jing Li, Fan Yang, Aibing Zhang
Software Mentions: 1
Published: about 8 years ago

10.3389/fphys.2018.01920

Transcriptomic Analysis Reveals Insights on Male Infertility in Octopus maya Under Chronic Thermal Stress
Cited by: 7
Author(s): Laura López‐Galindo, Óscar E. Juárez, Ernesto Larios‐Soriano, Giulia Del Vecchio, Claudia Ventura-López, Asunción Lago‐Lestón, Clara E. Galindo-Sánchez
Software Mentions: 1
Published: almost 6 years ago

10.3390/microorganisms8121985

Outer Membrane Vesicles Derived from Klebsiella pneumoniae Influence the miRNA Expression Profile in Human Bronchial Epithelial BEAS-2B Cells
Cited by: 24
Author(s): Federica Dell’Annunziata, Concetta Paola Ilisso, Carmela Dell’Aversana, Giovanna Greco, Alessandra Coppola, Francesca Martora, Fabrizio Dal Piaz, Giuliana Donadio, Annarita Falanga, Massimiliano Galdiero, Lucia Altucci, Marina Porcelli, Veronica Folliero, Gianluigi Franci
Software Mentions: 1
Published: almost 4 years ago

10.3389/fcimb.2021.622327

Polyphenol Enriched Diet Administration During Pregnancy and Lactation Prevents Dysbiosis in Ulcerative Colitis Predisposed Littermates
Cited by: 8
Author(s): Stefania De Santis, Aurelia Scarano, Marina Liso, Francesco Maria Calabrese, Giulio Verna, Elisabetta Cavalcanti, Annamaria Sila, Antonio Lippolis, Maria De Angelis, Angelo Santino, Marcello Chieppa
Software Mentions: 1
Published: over 3 years ago

10.3389/fpls.2013.00423

Comparative transcript profiling by SuperSAGE identifies novel candidate genes for controlling potato quantitative resistance to late blight not compromised by late maturity
Cited by: 35
Author(s): Astrid M. Draffehn, Li Li, Nicolas Krezdorn, Jia Ding, Jens Lübeck, Josef Strahwald, Meki S. Muktar, Birgit Walkemeier, Björn Rotter, Christiane Gebhardt
Software Mentions: 1
Published: almost 12 years ago

10.1038/s41438-021-00628-6

Transcripts switched off at the stop of phloem unloading highlight the energy efficiency of sugar import in the ripening V. vinifera fruit
Cited by: 12
Author(s): Stefania Savoi, Laurent Torregrosa, Charles Romieu
Software Mentions: 1
Published: about 3 years ago

10.1038/s42003-018-0209-1

Cooperative interaction among BMAL1, HSF1, and p53 protects mammalian cells from UV stress
Cited by: 23
Author(s): Genki Kawamura, Mitsuru Hattori, Ken Takamatsu, Teruyo Tsukada, Yasuharu Ninomiya, Ivor J. Benjamin, Paolo Sassone‐Corsi, Toshio Ozawa, Teruya Tamaru
Software Mentions: 1
Published: almost 6 years ago

10.3389/fcimb.2016.00154

Age-Related Differences in the Luminal and Mucosa-Associated Gut Microbiome of Broiler Chickens and Shifts Associated with Campylobacter jejuni Infection
Cited by: 115
Author(s): W. A. Awad, Evelyne Mann, Monika Dzieciol, Claudia Heß, Stephan Schmitz‐Esser, Martin Wagner, Michael Heß
Software Mentions: 1
Published: almost 8 years ago

10.1186/s40249-017-0255-9

Seroprevalence of hepatitis B, hepatitis C, human immunodeficiency virus, Treponema pallidum, and co-infections among blood donors in Kyrgyzstan: a retrospective analysis (2013–2015)
Cited by: 9
Author(s): Bakyt B. Karabaev, Nurgul J. Beisheeva, Aiganysh B. Satybaldieva, Aikul D. Ismailova, Frank Peßler, Manas K. Akmatov
Software Mentions: 1
Published: over 7 years ago

10.1128/IAI.00490-17

Comparison of Salmonella enterica Serovars Typhi and Typhimurium Reveals Typhoidal Serovar-Specific Responses to Bile
Cited by: 33
Author(s): Rebecca Johnson, Matt Ravenhall, Derek Pickard, Gordon Dougan, Alexander M. P. Byrne, Gad Frankel
Software Mentions: 1
Published: over 6 years ago

10.1186/s12864-017-4279-0

Proteomics in non-human primates: utilizing RNA-Seq data to improve protein identification by mass spectrometry in vervet monkeys
Cited by: 18
Author(s): J. Michael Proffitt, Jeremy P. Glenn, Anthony J. Cesnik, Avinash Y.L. Jadhav, Michael R. Shortreed, Lloyd M. Smith, Kylie Kavanagh, Laura A. Cox, Michael Olivier
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pone.0146649

Serum Cytokines as Biomarkers in Islet Cell Transplantation for Type 1 Diabetes
Cited by: 12
Author(s): Cornelis R. van der Torren, A. A. Verrijn Stuart, DaHae Lee, Jenny Meerding, Ursule Van de Velde, Daniël Pipeleers, Pieter Gillard, Bart Keymeulen, Wilco de Jager, Bart O. Roep
Software Mentions: 1
Published: almost 9 years ago

10.1186/s12864-017-3842-z

Comparative genome and transcriptome analysis reveals distinctive surface characteristics and unique physiological potentials of Pseudomonas aeruginosa ATCC 27853
Cited by: 33
Author(s): Huiluo Cao, Yong Lai, Salim Bougouffa, Zeling Xu, Aixin Yan
Software Mentions: 1
Published: over 7 years ago

10.7150/jca.40850

Analysis of Differentially Expressed Genes in a Chinese Cohort of Esophageal Squamous Cell Carcinoma
Cited by: 3
Author(s): Gang Liu, Yuan Zhao, Huili Chen, Jinru Jia, Xiaomin Cheng, Fengjie Wang, Qiang Ji, Rick F. Thorne, Song Chen, Xiaoying Li
Software Mentions: 1
Published: almost 5 years ago

10.1186/s12967-020-02474-x

Identification and validation of smoking-related genes in lung adenocarcinoma using an in vitro carcinogenesis model and bioinformatics analysis
Cited by: 9
Author(s): Jin Wang, Tao Chen, Xiaofan Yu, Nan Ouyang, Lirong Tan, Beibei Jia, Jian Tong, Jianxiang Li
Software Mentions: 1
Published: over 4 years ago

10.1186/s12862-020-01711-7

Avian phenotypic convergence is subject to low genetic constraints based on genomic evidence
Cited by: 1
Author(s): Yu-Chi Chen, Hao-Chih Kuo, Wen‐Sui Lo, Chih‐Ming Hung
Software Mentions: 1
Published: about 4 years ago

10.1186/s12870-016-0739-y

Analysis of transcripts differentially expressed between fruited and deflowered ‘Gala’ adult trees: a contribution to biennial bearing understanding in apple
Cited by: 31
Author(s): Baptiste Guitton, Jean-Jacques Kelner, Jean‐Marc Celton, Xavier Sabau, Jean-Pierre Renou, David Chagné, Evelyne Costes
Software Mentions: 1
Published: over 8 years ago

10.3389/fbioe.2017.00056

Complete Genome Sequence and Comparative Analysis of Staphylococcus condimenti DSM 11674, a Potential Starter Culture Isolated from Soy Sauce Mash
Cited by: 1
Author(s): Hai‐Lin Dong, Jian Chen, Andrew K. Hastings, Lan-Ping Guo, Beiwen Zheng
Software Mentions: 1
Published: about 7 years ago

10.3389/fpls.2019.00434

Harnessing Novel Diversity From Landraces to Improve an Elite Barley Variety
Cited by: 25
Author(s): Ana Belén Monteagudo, Ana M. Casas, Carlos Pérez Cantalapiedra, Bruno Contreras‐Moreira, María Pilar Rivero Gracia, Ernesto Igartua
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2018.01674

High-Throughput Analysis Reveals Seasonal Variation of the Gut Microbiota Composition Within Forest Musk Deer (Moschus berezovskii)
Cited by: 38
Author(s): Xiaolong Hu, Gang Liu, Yimeng Li, Yinmao Wei, Shaobi Lin, Shuqiang Liu, Yunlin Zheng, Defu Hu
Software Mentions: 1
Published: over 6 years ago

10.3389/fmicb.2015.00098

Transcriptome analyses to investigate symbiotic relationships between marine protists
Cited by: 22
Author(s): Sergio Balzano, Matthieu Le Corre, Johan Decelle, Roberto Sierra, Patrick Wincker, Corinne Da Silva, Julie Poulain, Jan Pawłowski, Fabrice Not
Software Mentions: 1
Published: over 9 years ago

10.1186/s12864-016-2860-6

A transcriptional blueprint for a spiral-cleaving embryo
Cited by: 18
Author(s): Hsien-Chao Chou, Margaret M. Pruitt, Benjamin Bastin, Stephan Schneider
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0132860

Effects of Host Phylogeny and Habitats on Gut Microbiomes of Oriental River Prawn (Macrobrachium nipponense)
Cited by: 53
Author(s): Tzong-Der Tzeng, Yueh-Yang Pao, Po‐Cheng Chen, Francis Cheng-Hsuan Weng, Wen Dar Jean, Daryi Wang
Software Mentions: 1
Published: over 9 years ago

10.1186/1471-2164-15-272

Comparative genomics of the dairy isolate Streptococcus macedonicus ACA-DC 198 against related members of the Streptococcus bovis/Streptococcus equinus complex
Cited by: 34
Author(s): Konstantinos Papadimitriou, Rania Anastasiou, Eleni Mavrogonatou, Jochen Blom, Νικολαοσ Παπανδρεου, Stavros J. Hamodrakas, Stéphanie Ferreira, Pierre Renault, Philip Supply, Bruno Pot, Effie Tsakalidou
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0202582

Population genetic analysis of aquaculture salmonid populations in China using a 57K rainbow trout SNP array
Cited by: 6
Author(s): Han-Yuan Zhang, Zixia Zhao, Jian Xu, Peng Xu, Qingli Bai, Shiyong Yang, Lin Jiang, Baohua Chen
Software Mentions: 1
Published: over 6 years ago

10.3390/cancers11020127

Tribbles Homolog 3 Involved in Radiation Response of Triple Negative Breast Cancer Cells by Regulating Notch1 Activation
Cited by: 21
Author(s): Yueh Chun Lee, Wen Ling Wang, Wei Chao Chang, Yuhao Huang, Guan Hong, Hui Lin Wang, Ying-Hsiang Chou, Hsien-Chun Tseng, Hsueh Te Lee, Shao Ti Li, Hsin Lin Chen, Chun Chi Wu, Huei Fan Yang, Bing Yen Wang, Wen‐Wei Chang
Software Mentions: 1
Published: almost 6 years ago

10.3389/fpsyt.2020.00192

Identification of Key Genes and the Pathophysiology Associated With Major Depressive Disorder Patients Based on Integrated Bioinformatics Analysis
Cited by: 15
Author(s): Guangyin Zhang, Shixin Xu, Zhenqing Zhang, Yu Zhang, Yankun Wu, Jinpeng An, Jinyu Lin, Zhuo Yuan, Ли Шен, Tianmei Si
Software Mentions: 1
Published: over 4 years ago

10.1186/s12284-021-00486-9

The Interaction between Rice Genotype and Magnaporthe oryzae Regulates the Assembly of Rice Root-Associated Microbiota
Cited by: 6
Author(s): Dagang Tian, Zaijie Chen, Yan Lin, Tingmin Liang, Ziqiang Chen, Xinrui Guo, Feng Wang, Zonghua Wang
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pgen.1004912

A Regulatory Hierarchy Controls the Dynamic Transcriptional Response to Extreme Oxidative Stress in Archaea
Cited by: 30
Author(s): Peter D. Tonner, Andrew J. Pittman, Jordan G. Gulli, Kusum Sharma, Amy K. Schmid
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pgen.1005143

Unsaturation of Very-Long-Chain Ceramides Protects Plant from Hypoxia-Induced Damages by Modulating Ethylene Signaling in Arabidopsis
Cited by: 79
Author(s): Li Xie, Qin Fang Chen, Mo Xian Chen, Yu Lu, Li Huang, Liang Chen, Fengzhu Wang, Fan Xia, Tian Ren Zhu, Jian Wu, Jing Yin, Bin Liao, Jiannong Shi, Jianhua Zhang, Asaph Aharoni, Nan Yao, Wen‐Sheng Shu, Shi Xiao
Software Mentions: 1
Published: over 9 years ago

10.1002/ece3.5564

Effects of natural vegetative restoration on soil fungal and bacterial communities in bare patches of the southern Taihang Mountains
Cited by: 5
Author(s): He Zhao, Xuanzhen Li, Zhiming Zhang, Jun Yang, Ye Zhao, Zi Yang, Qili Hu
Software Mentions: 1
Published: over 5 years ago

10.1038/srep19256

Texture analysis in gel electrophoresis images using an integrative kernel-based approach
Cited by: 18
Author(s): Carlos Fernández-Lozano, José A. Seoane, Marcos Gestal, Tom R. Gaunt, Julián Dorado, Alejandro Pazos, Colin Campbell
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-021-94291-5

Combined bioinformatics technology to explore pivot genes and related clinical prognosis in the development of gastric cancer
Cited by: 3
Author(s): Jiasheng Xu, Xinlu Wang, Qiwen Ke, Kaili Liao, Yanhua Wan, Kaihua Zhang, Zhang Guanyu, Xiaozhong Wang
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pgen.1008029

Intercellular communication is required for trap formation in the nematode-trapping fungus Duddingtonia flagrans
Cited by: 53
Author(s): Loubna Youssar, Valentin Wernet, Nicole Hensel, Xi Yu, Heinz Georg Hildebrand, Birgit Schreckenberger, Marius Kriegler, Birgit Hetzer, Phillip A. Frankino, Andrew Dillin, Reinhard Fischer
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms19123847

Comparison of Two Solid-Phase Extraction (SPE) Methods for the Identification and Quantification of Porcine Retinal Protein Markers by LC-MS/MS
Cited by: 33
Author(s): Carsten Schmelter, Sebastian Funke, Jana Treml, Anja Beschnitt, Natarajan Perumal, Caroline Manicam, Norbert Pfeiffer, Franz H. Grus
Software Mentions: 1
Published: almost 6 years ago

10.1038/srep36639

Gene expression profiling of breast cancer in Lebanese women
Cited by: 31
Author(s): Joelle Makoukji, Nadine J. Makhoul, Maya Khalil, Sally El-Sitt, Ehab Saad Aldin, Mark Jabbour, Fouad Boulos, Emanuela Gadaleta, Ajanthah Sangaralingam, Claude Chelala, Rose Mary Boustany, Arafat Tfayli
Software Mentions: 1
Published: about 8 years ago

10.3389/fmicb.2018.02552

Dietary Exposure to the Environmental Chemical, PFOS on the Diversity of Gut Microbiota, Associated With the Development of Metabolic Syndrome
Cited by: 53
Author(s): Keng Po Lai, Alice Hoi-Man Ng, Hin Ting Wan, Aman Yi-Man Wong, Cherry Chi-Tim Leung, Rong Li, Chris K C Wong
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pcbi.1005340

Contextual Refinement of Regulatory Targets Reveals Effects on Breast Cancer Prognosis of the Regulome
Cited by: 5
Author(s): Erik H. Andrews, Yue Wang, Tian Xia, Wenqing Cheng, Chao Cheng
Software Mentions: 1
Published: almost 8 years ago

10.3389/fmicb.2018.02821

Particle-Attached and Free-Living Archaeal Communities in the Benthic Boundary Layer of the Mariana Trench
Cited by: 9
Author(s): Hongmei Jing, Wenda Zhu, Hongbin Liu, Liping Zheng, Yu Zhang
Software Mentions: 1
Published: about 6 years ago

10.3389/fmicb.2016.01269

Pika Gut May Select for Rare but Diverse Environmental Bacteria
Cited by: 46
Author(s): Huan Li, Tongtong Li, Minjie Yao, Jiabao Li, Shiheng Zhang, Stephan Wirth, Weidong Cao, Qiang Lin, Xiangzhen Li
Software Mentions: 1
Published: over 8 years ago

10.3390/plants10010160

Comparative Transcriptome Analysis Provides New Insights into the Molecular Regulatory Mechanism of Adventitious Root Formation in Ramie (Boehmeria nivea L.)
Cited by: 1
Author(s): Kunmei Chen, Bing Guo, Chang Yeon Yu, Ping Chen, Jikang Chen, Gang Gao, Xiaofei Wang, Aiguo Zhu
Software Mentions: 1
Published: almost 4 years ago

10.1093/scan/nsab012

Left superior temporal sulcus morphometry mediates the impact of anxiety and depressive symptoms on sleep quality in healthy adults
Cited by: 6
Author(s): Yanlin Wang, Ping Jiang, Shi Tang, Lu Lu, Xuan Bu, Lianqing Zhang, Yingxue Gao, Hailong Li, Xinyu Hu, Song Wang, Zhiyun Jia, Neil P. Roberts, Xiaoqi Huang, Qiyong Gong
Software Mentions: 1
Published: almost 4 years ago

10.3390/plants10081569

Identification and Characterization of Arbutus unedo L. Endophytic Bacteria Isolated from Wild and Cultivated Trees for the Biological Control of Phytophthora cinnamomi
Cited by: 1
Author(s): João Martins, Aitana Ares, Vinícius Casais, Joana Costa, Jorge Canhoto
Software Mentions: 1
Published: over 3 years ago

10.1186/s12864-018-4647-4

A comparative genomics study of carbohydrate/glucose metabolic genes: from fish to mammals
Cited by: 30
Author(s): Yuru Zhang, Chaobin Qin, Liping Yang, Rongzhu Lu, Xiaoyan Zhao, Guo-Xing Nie
Software Mentions: 1
Published: over 6 years ago

Projects: cran: VennDiagram

Papers Mentioning VennDiagram 626