cran: VennDiagram | Projects | Ecosyste.ms: Papers

10.3389/fmicb.2018.02878

Bacterial Diversity Associated With the Rhizosphere and Endosphere of Two Halophytes: Glaux maritima and Salicornia europaea
Cited by: 51
Author(s): Kosuke Yamamoto, Yuh Shiwa, Taichiro Ishige, Hikaru Sakamoto, Keisuke Tanaka, Makoto Uchino, Naoto Tanaka, Suguru Oguri, Hiromasa Saitoh, Seiya Tsushima
Software Mentions: 4
Published: almost 6 years ago

10.7150/jca.51321

AURKA and FAM83A are prognostic biomarkers and correlated with Tumor-infiltrating Lymphocytes in smoking related Lung Adenocarcinoma
Cited by: 7
Author(s): Mengyu Zhang, Huo Chen, Yingxiao Jiang, Jianyu Liu, Yi-Can Yang, Yunhong Yin, Yi-Qing Qu
Software Mentions: 4
Published: almost 4 years ago

10.1371/journal.pone.0208054

Agnostic detection of genomic alterations by holistic DNA structural interrogation
Cited by: 1
Author(s): Ryan K. Shultzaberger, Rachel E. Abrams, Challise J. Sullivan, Anthony Schmitt, T. W. Thompson, John Dresios
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pone.0134168

Comparative Proteomics of Activated THP-1 Cells Infected with Mycobacterium tuberculosis Identifies Putative Clearance Biomarkers for Tuberculosis Treatment
Cited by: 19
Author(s): Benjawan Kaewseekhao, Vivek Naranbhai, Sittiruk Roytrakul, Wises Namwat, Atchara Paemanee, Viraphong Lulitanond, Angkana Chaiprasert, Kiatichai Faksri
Software Mentions: 4
Published: over 9 years ago

10.3389/fgene.2020.00478

Bioinformatics Analysis of Prognostic miRNA Signature and Potential Critical Genes in Colon Cancer
Cited by: 25
Author(s): Weigang Chen, Chang Gao, Yong Liu, Ying Wen, Xiaoling Hong, Zunnan Huang
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0238420

Construction and analysis of a competing endogenous RNA network to reveal potential prognostic biomarkers for Oral Floor Squamous Cell Carcinoma
Cited by: 1
Author(s): Wenjing Zhang, Shuai Xu, Laner Shi, Zhangzhi Zhu, Xinying Xie
Software Mentions: 4
Published: about 4 years ago

10.1093/gigascience/giz102

Metabolic responses of rice source and sink organs during recovery from combined drought and heat stress in the field
Cited by: 13
Author(s): Lovely Mae F Lawas, Alexander Erban, Joachim Kopka, S. V. Krishna Jagadish, Ellen Zuther, Dirk K. Hincha
Software Mentions: 4
Published: over 5 years ago

10.3390/jcm10112259

Learning from Embryogenesis—A Comparative Expression Analysis in Melanoblast Differentiation and Tumorigenesis Reveals miRNAs Driving Melanoma Development
Cited by: 4
Author(s): Lisa Linck-Paulus, Lisa Lämmerhirt, Daniel Völler, Katharina Meyer, Julia C. Engelmann, Rainer Spang, Norbert Eichner, Gunter Meister, Silke Kuphal, Anja‐Katrin Bosserhoff
Software Mentions: 4
Published: over 3 years ago

10.1038/srep24048

RXR controlled regulatory networks identified in mouse brain counteract deleterious effects of Aβ oligomers
Cited by: 27
Author(s): Kyong Nyon Nam, Anaïs Mounier, Nicholas F. Fitz, Cody M. Wolfe, Jonathan Schug, Iliya Lefterov, Radosveta Koldamova
Software Mentions: 4
Published: over 8 years ago

10.1093/femsec/fiab134

Indicative bacterial communities and taxa of disease-suppressing and growth-promoting composts and their associations to the rhizoplane
Cited by: 2
Author(s): Johanna Mayerhofer, Barbara Thuerig, T. Oberhaensli, Eileen Enderle, Stefanie Lutz, Christian H. Ahrens, Jacques Fuchs, Franco Widmer
Software Mentions: 4
Published: about 3 years ago

10.1371/journal.pone.0154315

VennPainter: A Tool for the Comparison and Identification of Candidate Genes Based on Venn Diagrams
Cited by: 61
Author(s): Guoliang Lin, Jing Chai, Shuo Yuan, Chao Mai, Li Cai, Robert W. Murphy, Wei Zhou, Jing Luo
Software Mentions: 4
Published: over 8 years ago

10.1371/journal.pone.0240037

Changes in root-associated fungal communities in Triticum aestivum ssp. spelta L. and Triticum aestivum ssp. vulgare L. under drought stress and in various soil processing
Cited by: 12
Author(s): Sylwia Salamon, Katarzyna Mikołajczak, Lidia Błaszczyk, Karolina Ratajczak, H. Sulewska
Software Mentions: 4
Published: about 4 years ago

10.1186/s12974-019-1645-7

IL-1β-driven amyloid plaque clearance is associated with an expansion of transcriptionally reprogrammed microglia
Cited by: 34
Author(s): Fátima Rivera-Escalera, Jonathan J. Pinney, Laura Owlett, Hoda A. Ahmed, Juilee Thakar, John A. Olschowka, Michael R. Elliott, M. Kerry O’Banion
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.pgen.1007357

Robustness encoded across essential and accessory replicons of the ecologically versatile bacterium Sinorhizobium meliloti
Cited by: 48
Author(s): George C. diCenzo, Alex B. Benedict, Marco Fondi, Graham C. Walker, Turlough M. Finan, Alessio Mengoni, Joel S. Griffitts
Software Mentions: 4
Published: over 6 years ago

10.1038/s41598-017-01032-8

Transcriptomic analysis reveals a previously unknown role for CD8+ T-cells in rVSV-EBOV mediated protection
Cited by: 28
Author(s): Andrea Menicucci, Suhas Sureshchandra, Andrea Marzi, Heinz Feldmann, Ilhem Messaoudi
Software Mentions: 4
Published: over 7 years ago

10.18632/aging.102190

Long non-coding RNA CASC19 is associated with the progression and prognosis of advanced gastric cancer
Cited by: 23
Author(s): Wenjie Wang, Changan Guo, Rui Li, Zipeng Xu, Jianping Yu, Ye Yan, Jun Zhao, Jing Wang, Wen-An Wang, An Zhang, Hongtao Li, Chen Wang, Hongbin Liu
Software Mentions: 4
Published: over 5 years ago

10.1111/jcmm.14598

Establishment and characterization of induced pluripotent stem cells (iPSCs) from central nervous system lupus erythematosus
Cited by: 10
Author(s): Maria Teresa De Angelis, Gianluca Santamaria, Elvira Immacolata Parrotta, Stefania Scalise, Michela Lo Conte, Sara Gasparini, Edoardo Ferlazzo, Umberto Aguglia, Clara Ciampi, Antonella Sgura, Giovanni Cuda
Software Mentions: 3
Published: about 5 years ago

10.1080/21623945.2021.1889815

Effects of non-vascularized adipose tissue transplantation on its genetic profile
Cited by: 1
Author(s): Jeannine Susanne Schreiter, Olga Kurow, Stefan Langer, M. Steinert, Lucas Massier
Software Mentions: 3
Published: almost 4 years ago

10.1186/s13195-020-00641-2

Diverse proteins aggregate in mild cognitive impairment and Alzheimer’s disease brain
Cited by: 20
Author(s): Devin Kepchia, Ling Huang, Richard Dargusch, Robert A. Rissman, Maxim N. Shokhirev, Wolfgang Fischer, David Schubert
Software Mentions: 3
Published: over 4 years ago

10.1128/AEM.00815-20

Endosymbionts of Metazoans Dwelling in the PACManus Hydrothermal Vent: Diversity and Potential Adaptive Features Revealed by Genome Analysis
Cited by: 4
Author(s): Leilei Li, Minxiao Wang, Lifeng Li, Zheng Du, Yan Sun, Xiaocheng Wang, Xin Zhang, Chaolun Li
Software Mentions: 3
Published: about 4 years ago

10.1186/s13075-019-2069-6

High-throughput sequencing of CD4+ T cell repertoire reveals disease-specific signatures in IgG4-related disease
Cited by: 11
Author(s): Liwen Wang, Panpan Zhang, Jieqiong Li, Hui Lu, Linyi Peng, Jing Ling, Xuan Zhang, Xiaofeng Zeng, Yan Zhao
Software Mentions: 3
Published: almost 5 years ago

10.1186/s12859-016-1281-5

VennDiagramWeb: a web application for the generation of highly customizable Venn and Euler diagrams
Cited by: 27
Author(s): Felix Lam, Christopher M. Lalansingh, Holly E. Babaran, Zhiyuan Wang, Stephenie D. Prokopec, Natalie S. Fox, Paul C. Boutros
Software Mentions: 3
Published: about 8 years ago

10.1186/s12885-021-08550-9

Quantification of m6A RNA methylation modulators pattern was a potential biomarker for prognosis and associated with tumor immune microenvironment of pancreatic adenocarcinoma
Cited by: 30
Author(s): Lianzi Wang, Shubing Zhang, Huimin Li, Yang Xu, Qiang Wu, Jilong Shen, Tao Li, Yuanhong Xu
Software Mentions: 3
Published: over 3 years ago

10.1186/s12862-019-1522-0

RADseq population genomics confirms divergence across closely related species in blue coral (Heliopora coerulea)
Cited by: 11
Author(s): Akira Iguchi, Yuki Yoshioka, Zac H. Forsman, Ingrid S. Knapp, Robert J. Toonen, Yuki Hongo, Satoshi Nagai, Nina Yasuda
Software Mentions: 3
Published: about 5 years ago

10.1186/s12864-018-4785-8

Diversity and signature of small RNA in different bodily fluids using next generation sequencing
Cited by: 55
Author(s): Mohamed M. El-Mogy, Bernard Lam, Taha A. Haj-Ahmad, Shannon McGowan, Darrick L. Yu, Lucas Nosal, Nezar Rghei, Pamela D. Roberts, Yousef Haj-Ahmad
Software Mentions: 3
Published: over 6 years ago

10.1186/s12864-020-6570-8

MicroRNA expression profile analysis in sperm reveals hsa-mir-191 as an auspicious omen of in vitro fertilization
Cited by: 37
Author(s): Hua Xu, Xin Wang, Zhikai Wang, Jianhui Li, Zhiming Xu, Maohua Miao, Guowu Chen, Xiang-Dong Lei, Jun Wu, Huijuan Shi, Ke Wang, Tiancheng Zhang, Xiaoxi Sun
Software Mentions: 3
Published: almost 5 years ago

10.1186/1471-2164-14-193

Dynamic regulation of epigenomic landscapes during hematopoiesis
Cited by: 45
Author(s): Brian J. Abraham, Kairong Cui, Qingsong Tang, Keji Zhao
Software Mentions: 3
Published: over 11 years ago

10.1186/s12864-019-6000-y

Hybrid sequencing of the Gynostemma pentaphyllum transcriptome provides new insights into gypenoside biosynthesis
Cited by: 14
Author(s): Tongtong Liang, Li-Qiu Zou, Sijie Sun, Xue-Jun Kuang, Jianhe Wei, Lizhi Wang, Ying Liu, Chao Sun
Software Mentions: 3
Published: over 5 years ago

10.1186/s12864-018-4596-y

Divergent transcriptomic responses underlying the ranaviruses-amphibian interaction processes on interspecies infection of Chinese giant salamander
Cited by: 14
Author(s): Ke Fei, Jian‐Fang Gui, Zhongyuan Chen, Tao Li, Cun-Ke Lei, Zi-Hao Wang, Qi-Ya Zhang
Software Mentions: 3
Published: over 6 years ago

10.1186/s12920-018-0467-2

Glucocorticoid-driven transcriptomes in human airway epithelial cells: commonalities, differences and functional insight from cell lines and primary cells
Cited by: 29
Author(s): Mahmoud Mostafa, Christopher F. Rider, Suharsh Shah, Suzanne L. Traves, Paul M. Gordon, Anna Miller‐Larsson, Richard Leigh, Robert Newton
Software Mentions: 3
Published: almost 6 years ago

10.1186/s12870-021-03060-z

An NADPH oxidase regulates carbon metabolism and the cell cycle during root nodule symbiosis in common bean (Phaseolus vulgaris)
Cited by: 10
Author(s): Citlali Fonseca-García, Noreide Nava, Miguel Lara, Carmen Quinto
Software Mentions: 3
Published: over 3 years ago

10.1186/s12575-020-00125-5

Combination of Size-Exclusion Chromatography and Ultracentrifugation Improves the Proteomic Profiling of Plasma-Derived Small Extracellular Vesicles
Cited by: 33
Author(s): Rui Wei, Libo Zhao, Guanyi Kong, Xiang Liu, Shoumin Zhu, Shutian Zhang, Li Min
Software Mentions: 3
Published: over 4 years ago

10.3390/biomedicines9020107

Breast Cancer-Derived Microvesicles Are the Source of Functional Metabolic Enzymes as Potential Targets for Cancer Therapy
Cited by: 4
Author(s): Yousef Risha, Vanessa Susevski, Nico Hüttmann, Suttinee Poolsup, Zoran Minić, Maxim V. Berezovski
Software Mentions: 3
Published: almost 4 years ago

10.1111/bjep.12339

Working memory predictors of mathematics across the middle primary school years
Cited by: 18
Author(s): K.N. Allen, David Giofrè, Steve Higgins, Joanne B. Adams
Software Mentions: 3
Published: almost 5 years ago

10.1038/s41374-020-0446-z

3′ MACE RNA-sequencing allows for transcriptome profiling in human tissue samples after long-term storage
Cited by: 25
Author(s): Stefaniya Boneva, Anja Schlecht, Daniel Böhringer, Hans Mittelviefhaus, Thomas Reinhard, Hansjürgen Agostini, Claudia Auw-Haedrich, Günther Schlunck, Julian Wolf, Clemens Lange
Software Mentions: 3
Published: about 4 years ago

10.26508/lsa.201800205

Innate extracellular vesicles from melanoma patients suppress β-catenin in tumor cells by miRNA-34a
Cited by: 22
Author(s): Jung-Hyun Lee, Jochen Dindorf, Martin Eberhardt, Xin Lai, Christian Ostalecki, Nina Koliha, Stefani Gross, Katja Blume, Heiko Bruns, Stefan Wild, Gerold Schuler, Julio Vera, Andreas S. Baur
Software Mentions: 3
Published: over 5 years ago

10.1099/mgen.0.000104

Modification of the Streptococcus mutans transcriptome by LrgAB and environmental stressors
Cited by: 16
Author(s): Kelly C. Rice, Matthew E. Turner, O’neshia V. Carney, Tongjun Gu, Sang‐Joon Ahn
Software Mentions: 3
Published: over 7 years ago

10.3390/microorganisms7090282

Differential Impact of Subtherapeutic Antibiotics and Ionophores on Intestinal Microbiota of Broilers
Cited by: 31
Author(s): Kelsy Robinson, Sage Becker, Yingping Xiao, Wentao Lyu, Qing Yang, Huiling Zhu, Hua Yang, Jiangchao Zhao, Guolong Zhang
Software Mentions: 3
Published: over 5 years ago

10.3390/microorganisms8101481

Environmental Influences of High-Density Agricultural Animal Operation on Human Forearm Skin Microflora
Cited by: 11
Author(s): Mengfei Peng, Debabrata Biswas
Software Mentions: 3
Published: about 4 years ago

10.3390/microorganisms8040543

Tracing the Origin of Planktonic Protists in an Ancient Lake
Cited by: 26
Author(s): Nataliia V. Annenkova, Caterina R. Giner, Ramiro Logares
Software Mentions: 3
Published: over 4 years ago

10.3390/molecules26164757

The Need for Community Standards to Enable Accurate Comparison of Glycoproteomics Algorithm Performance
Cited by: 10
Author(s): William Edwin Hackett, Joseph Zaia
Software Mentions: 3
Published: over 3 years ago

10.1186/s12985-016-0592-5

Functional prediction of differentially expressed lncRNAs in HSV-1 infected human foreskin fibroblasts
Cited by: 15
Author(s): Benxia Hu, Yongxia Huo, Guijun Chen, Liping Yang, Dong‐Dong Wu, Jumin Zhou
Software Mentions: 3
Published: over 8 years ago

10.3390/v12010091

Single Amino Acid Substitutions in the Cucumber Mosaic Virus 1a Protein Induce Necrotic Cell Death in Virus-Inoculated Leaves without Affecting Virus Multiplication
Cited by: 7
Author(s): Aolei Tian, Shuhei Miyashita, Sugihiro Ando, Hideki Takahashi
Software Mentions: 3
Published: almost 5 years ago

10.7717/peerj.6251

Different revegetation types alter soil physical-chemical characteristics and fungal community in the Baishilazi Nature Reserve
Cited by: 26
Author(s): Jiaojiao Deng, You Yin, Jiyao Luo, Wenxu Zhu, Yongbin Zhou
Software Mentions: 3
Published: almost 6 years ago

10.7717/peerj.12059

Distribution and diversity of myxomycetes in Tiantangzhai National Forest Park, China
Cited by: 2
Author(s): Min Li, Gaowei Wang, Yang Gao, Ming-Zhu Dou, Ziqi Wang, Shi Yan, Shuanglin Chen
Software Mentions: 3
Published: about 3 years ago

10.1371/journal.pbio.3000599

A proteomic atlas of senescence-associated secretomes for aging biomarker development
Cited by: 602
Author(s): Nathan Basisty, Abhijit Kale, Ok Hee Jeon, Chisaka Kuehnemann, Therese Payne, Chirag Rao, Anja Holtz, Samah Shah, Vagisha Sharma, Luigi Ferrucci, Judith Campisi, Birgit Schilling
Software Mentions: 3
Published: almost 5 years ago

10.1371/journal.pone.0205883

Single-cell RNA sequencing of the mammalian pineal gland identifies two pinealocyte subtypes and cell type-specific daily patterns of gene expression
Cited by: 33
Author(s): Joseph C. Mays, Michael C. Kelly, Steven L. Coon, Lynne A. Holtzclaw, Martin F. Rath, Matthew W. Kelley, David C. Klein
Software Mentions: 3
Published: about 6 years ago

10.1371/journal.pone.0161967

CYR61 and TAZ Upregulation and Focal Epithelial to Mesenchymal Transition May Be Early Predictors of Barrett’s Esophagus Malignant Progression
Cited by: 6
Author(s): Joana Cardoso, Marta Mesquita, António Dias Pereira, Mónica Bettencourt-Dias, Paula Chaves, José B. Pereira-Leal
Software Mentions: 3
Published: about 8 years ago

10.1371/journal.pone.0218858

Transcriptomes of antigen presenting cells in human thymus
Cited by: 13
Author(s): Ingvild Gabrielsen, Hanna Helgeland, Helle Akselsen, Hans Christian Dalsbotten Aass, Arvind Sundaram, Isaac Snowhite, Alberto Pugliese, Siri Tennebø Flåm, Benedicte A. Lie
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0053388

VennPlex–A Novel Venn Diagram Program for Comparing and Visualizing Datasets with Differentially Regulated Datapoints
Cited by: 86
Author(s): Huan Cai, Hongyu Chen, Tie Yi, Caitlin M. Daimon, John P. Boyle, Chris Peers, Stuart Maudsley, Bronwen Martin
Software Mentions: 3
Published: almost 12 years ago

10.1371/journal.pone.0157783

De Novo Transcriptome Analysis of the Common New Zealand Stick Insect Clitarchus hookeri (Phasmatodea) Reveals Genes Involved in Olfaction, Digestion and Sexual Reproduction
Cited by: 15
Author(s): Chen Wu, Ross N. Crowhurst, Alice B. Dennis, Victoria Twort, Shanlin Liu, Richard D. Newcomb, Howard A. Ross, Thomas R. Buckley
Software Mentions: 3
Published: over 8 years ago

10.1371/journal.pone.0089110

Otx2 ChIP-seq Reveals Unique and Redundant Functions in the Mature Mouse Retina
Cited by: 53
Author(s): Alexander Samuel, Michael Housset, Bruno Fant, Thomas Lamonerie
Software Mentions: 3
Published: almost 11 years ago

10.1371/journal.pone.0108550

A Comparison of Next Generation Sequencing Technologies for Transcriptome Assembly and Utility for RNA-Seq in a Non-Model Bird
Cited by: 35
Author(s): Findley R. Finseth, Richard G. Harrison
Software Mentions: 3
Published: about 10 years ago

10.1371/journal.pone.0245685

Brain organoid formation on decellularized porcine brain ECM hydrogels
Cited by: 44
Author(s): Robin Simsa, Theresa S.P. Rothenbücher, Hakan Gürbüz, Nidal Ghosheh, Jenny Emnéus, Lachmi Jenndahl, David L. Kaplan, Niklas Bergh, Alberto Martínez Serrano, Per Fogelstrand
Software Mentions: 3
Published: almost 4 years ago

10.3390/cancers11060883

Chemotherapeutic Drugs Inhibiting Topoisomerase 1 Activity Impede Cytokine-Induced and NF-κB p65-Regulated Gene Expression
Cited by: 9
Author(s): Tabea Riedlinger, Marek Bartkuhn, Tobias Zimmermann, Sandra B. Hake, Andrea Nist, Thorsten Stiewe, Michael Kracht, M. Lienhard Schmitz
Software Mentions: 3
Published: over 5 years ago

10.3390/cancers12113389

Beyond DNA Repair: DNA-PKcs in Tumor Metastasis, Metabolism and Immunity
Cited by: 18
Author(s): Haitang Yang, Feng Yao, Thomas Marti, Ralph A. Schmid, Ren‐Wang Peng
Software Mentions: 3
Published: about 4 years ago

10.1016/j.jcmgh.2020.11.008

Distinct and Overlapping Roles of Hippo Effectors YAP and TAZ During Human and Mouse Hepatocarcinogenesis
Cited by: 18
Author(s): Haichuan Wang, Jingxiao Wang, Shanshan Zhang, Jiaoyuan Jia, Xianqiong Liu, Jie Zhang, Pan Wang, Xinhua Song, Li Che, Ke Liu, Silvia Ribback, Antonio Cigliano, Matthias Evert, Hong Wu, Diego F. Calvisi, Yong Zeng
Software Mentions: 3
Published: almost 4 years ago

10.1016/j.celrep.2018.12.002

Mechanisms of Tumor-Induced Lymphovascular Niche Formation in Draining Lymph Nodes
Cited by: 54
Author(s): Catharina D. Commerford, Lothar C. Dieterich, Yuliang He, Tanja Hell, Javier A. Montoya-Zegarra, Simon Flyvbjerg Noerrelykke, Erica Russo, Martin Röcken, Michael Detmar
Software Mentions: 3
Published: almost 6 years ago

10.1186/s13601-018-0201-3

Having concomitant asthma phenotypes is common and independently relates to poor lung function in NHANES 2007–2012
Cited by: 25
Author(s): Rita Amaral, João Fonseca, Tiago Jacinto, Ana Margarida Pereira, Andreï Malinovschi, Christer Janson, Kjell Alving
Software Mentions: 3
Published: over 6 years ago

10.15252/emmm.202012574

Cooperation of LIM domain‐binding 2 (LDB2) with EGR in the pathogenesis of schizophrenia
Cited by: 2
Author(s): Tetsuo Ohnishi, Yuji Kiyama, Fumiko Arima-Yoshida, Mitsutaka Kadota, Tomoe Ichikawa, Kazuyuki Yamada, Akïharu Watanabe, Hideki Ohba, Kaori Tanaka, Akihiro Nakaya, Yasue Horiuchi, Yoshimi Iwayama, Manabu Toyoshima, Itone Ogawa, Chie Shimamoto-Mitsuyama, Motoko Maekawa, Shabeesh Balan, Makoto Arai, Mitsuhiro Miyashita, Kazuya Toriumi, Yayoi Nozaki, Rumi Kurokawa, Kazuhiro Suzuki, Akane Yoshikawa, Tomoko Toyota, Toshihiko Hosoya, Hiroyuki Okuno, Haruhiko Bito, Masanari Itokawa, Shigehiro Kuraku, Toshiya Manabe, Takeo Yoshikawa
Software Mentions: 3
Published: over 3 years ago

10.1093/femsec/fiaa082

Vegetation type determines spore deposition within a forest–agricultural mosaic landscape
Cited by: 19
Author(s): Miguel Á. Redondo, Anna Berlin, Johanna Boberg, Jonàs Oliva
Software Mentions: 3
Published: over 4 years ago

10.3389/fcell.2021.642773

Juvenile Huntington’s Disease and Other PolyQ Diseases, Update on Neurodevelopmental Character and Comparative Bioinformatic Review of Transcriptomic and Proteomic Data
Cited by: 7
Author(s): Karolina Świtońska-Kurkowska, Bart Krist, Joanna Delimata, Maciej Figiel
Software Mentions: 3
Published: over 3 years ago

10.3389/fcimb.2018.00079

Ecological Restoration of Antibiotic-Disturbed Gastrointestinal Microbiota in Foregut and Hindgut of Cows
Cited by: 25
Author(s): Shoukun Ji, Tao Jiang, Hui Yan, Changhong Guo, Jingjing Liu, Huawei Su, Gibson Maswayi Alugongo, Haitao Shi, Yajing Wang, Zhijun Cao, Shengli Li
Software Mentions: 3
Published: over 6 years ago

10.3389/fcimb.2021.663131

Alterations of Gut Microbiota in Patients With Graves’ Disease
Cited by: 14
Author(s): Shih-Cheng Chang, Shu-Fu Lin, Szu-Tah Chen, Pi-Yueh Chang, Yuan-Ming Yeh, Fu‐Sung Lo, Jang‐Jih Lu
Software Mentions: 3
Published: over 3 years ago

10.3389/fendo.2020.569085

Six-Week Exercise Training With Dietary Restriction Improves Central Hemodynamics Associated With Altered Gut Microbiota in Adolescents With Obesity
Cited by: 20
Author(s): Junhao Huang, Jingwen Liao, Yang Fang, Hailin Deng, Honggang Yin, Bing Shen, Min Hu
Software Mentions: 3
Published: almost 4 years ago

10.3389/fgene.2020.00411

Identification and Validation of Potential Biomarkers and Their Functions in Acute Kidney Injury
Cited by: 19
Author(s): Jianwen Chen, Yalei Chen, Alberto Olivero, Xiangmei Chen
Software Mentions: 3
Published: over 4 years ago

10.3389/fimmu.2015.00030

Distinct Transcriptomic Features are Associated with Transitional and Mature B-Cell Populations in the Mouse Spleen
Cited by: 35
Author(s): Eden Kleiman, Daria Salyakina, Magali de Heusch, Kristen L. Hoek, Joan M. Llanes, Iris Castro, Jacqueline A. Wright, Emily Clark, Derek M. Dykxhoorn, Enrico Capobianco, Akihiro Takeda, Jean‐Christophe Renauld, Wasif N. Khan
Software Mentions: 3
Published: almost 10 years ago

10.3389/fimmu.2018.03071

Protection Against Marburg Virus Using a Recombinant VSV-Vaccine Depends on T and B Cell Activation
Cited by: 34
Author(s): Andrea Marzi, Andrea Menicucci, Flora Engelmann, Julie Callison, Eva Horne, Friederike Feldmann, Allen Jankeel, Heinz Feldmann, Ilhem Messaoudi
Software Mentions: 3
Published: almost 6 years ago

10.3389/fmicb.2020.01362

Data-Independent Acquisition Proteomics Unravels the Effects of Iron Ions on Coronatine Synthesis in Pseudomonas syringae pv. tomato DC3000
Cited by: 5
Author(s): Yan He, Sha Yu, Shaojin Liu, Hao Tian, Chunxin Yu, Weiming Tan, Jie Zhang, Zhaohu Li, Feng Jiang, Liusheng Duan
Software Mentions: 3
Published: over 4 years ago

10.3389/fmicb.2018.03335

Microbial-Driven Butyrate Regulates Jejunal Homeostasis in Piglets During the Weaning Stage
Cited by: 33
Author(s): Xi Zhong, Zhongwei Zhang, Shujin Wang, Lili Cao, Lin Zhou, Aomin Sun, Zhendong Zhong, Miranda Nabben
Software Mentions: 3
Published: almost 6 years ago

10.3389/fmicb.2021.650440

Fungal Community Composition and Diversity Vary With Soil Horizons in a Subtropical Forest
Cited by: 17
Author(s): Xia Luo, Kezhong Liu, Yiming Shen, Guojing Yao, Wenge Yang, Peter E. Mortimer, Heng Gui
Software Mentions: 3
Published: over 3 years ago

10.3389/fmicb.2018.00864

Insight Into the Variation of Bacterial Structure in Atrazine-Contaminated Soil Regulating by Potential Phytoremediator: Pennisetum americanum (L.) K. Schum
Cited by: 28
Author(s): Bo Cao, Ying Zhang, Ziyi Wang, Mengyuan Li, Feng Yang, Dagang Jiang, Zhao Jiang
Software Mentions: 3
Published: over 6 years ago

10.3389/fmicb.2021.683410

Integrated Metagenomic Assessment of Multiple Pre-harvest Control Points on Lettuce Resistomes at Field-Scale
Cited by: 4
Author(s): Lauren Wind, Ishi Keenum, Suraj Gupta, Partha Pratim Ray, Katharine F. Knowlton, Monica A. Ponder, W. Cully Hession, Amy Pruden, Leigh‐Anne Krometis
Software Mentions: 3
Published: over 3 years ago

10.3389/fmicb.2021.567961

Tree Species Richness and Neighborhood Effects on Ectomycorrhizal Fungal Richness and Community Structure in Boreal Forest
Cited by: 11
Author(s): Eveli Otsing, Sten Anslan, Elia Ambrosio, Julia Koricheva, Leho Tedersoo
Software Mentions: 3
Published: over 3 years ago

10.3389/fmicb.2021.637834

Surface Topography, Bacterial Carrying Capacity, and the Prospect of Microbiome Manipulation in the Sea Anemone Coral Model Aiptasia
Cited by: 18
Author(s): R. M. Costa, Anny Cárdenas, Céline Loussert, Gaëlle Toullec, A. Meibom, Christian R. Voolstra
Software Mentions: 3
Published: over 3 years ago

10.3389/fmicb.2020.01471

Warming, but Not Acidification, Restructures Epibacterial Communities of the Baltic Macroalga Fucus vesiculosus With Seasonal Variability
Cited by: 8
Author(s): Birte Mensch, Sven C. Neulinger, Sven Künzel, Martin Wahl, Ruth A. Schmitz
Software Mentions: 3
Published: over 4 years ago

10.3389/fmicb.2020.587873

Effects of Sex and Diet on Gut Microbiota of Farmland-Dependent Wintering Birds
Cited by: 21
Author(s): Gang Liu, Meng Deng, Minghao Gong, Huixin Li, Wanyu Wen, Yuhang Wang, Zhou Jing-ying
Software Mentions: 3
Published: about 4 years ago

10.3389/fmicb.2020.555795

Environmental Parameters and Substrate Type Drive Microeukaryotic Community Structure During Short-Term Experimental Colonization in Subtropical Eutrophic Freshwaters
Cited by: 7
Author(s): Changyu Zhu, David Bass, Yutao Wang, Zhuo Shen, Weibo Song, Zhenzhen Yi
Software Mentions: 3
Published: about 4 years ago

10.3389/fmicb.2019.00483

Bacterial Communities Associated With Spherical Nostoc Macrocolonies
Cited by: 8
Author(s): Pablo S. Aguilar, Cristina Dorador, Irma Vila, Rubén Sommaruga
Software Mentions: 3
Published: over 5 years ago

10.3389/fmicb.2016.00150

The Cacti Microbiome: Interplay between Habitat-Filtering and Host-Specificity
Cited by: 148
Author(s): Citlali Fonseca-García, Devin Coleman‐Derr, Etzel Garrido, Axel Visel, Susannah G. Tringe, Laila P. Partida‐Martínez
Software Mentions: 3
Published: almost 9 years ago

10.3389/fnins.2020.00472

Genes Bound by ΔFosB in Different Conditions With Recurrent Seizures Regulate Similar Neuronal Functions
Cited by: 3
Author(s): Gabriel S. Stephens, Chia-Hsuan Fu, Corey P St Romain, Yi Zheng, Justin J. Botterill, Helen E. Scharfman, Yin Liu, Jeannie Chin
Software Mentions: 3
Published: over 4 years ago

10.3389/fonc.2020.584055

Prognostic Value of Genes and Immune Infiltration in Prostate Tumor Microenvironment
Cited by: 16
Author(s): Wenjuan Sun, Hailin Shi, Zhen Yuan, Xia Li, Xuebao Xiang, Xiangfeng Quan, Wenjie Shi, Leiming Jiang
Software Mentions: 3
Published: about 4 years ago

10.3389/fonc.2021.651350

The Landscape of Microbial Composition and Associated Factors in Pancreatic Ductal Adenocarcinoma Using RNA-Seq Data
Cited by: 3
Author(s): Dong Yu, Tengjiao Wang, Dong Liang, Mei Yue, Wenbin Zou, Shiwei Guo
Software Mentions: 3
Published: over 3 years ago

10.3389/fonc.2021.703465

A Novel Oral Arginase 1/2 Inhibitor Enhances the Antitumor Effect of PD-1 Inhibition in Murine Experimental Gliomas by Altering the Immunosuppressive Environment
Cited by: 21
Author(s): Paulina Pilanc, Kamil Wojnicki, Adria‐Jaume Roura, Salwador Cyranowski, Aleksandra Ellert-Miklaszewska, Natalia Ochocka, Bartłomiej Gielniewski, Marcin Grzybowski, Roman Błaszczyk, Paulina Seweryna Stańczak, Paweł Dobrzański, Bożena Kamińska
Software Mentions: 3
Published: about 3 years ago

10.3389/fpls.2016.01934

De novo Sequencing and Comparative Transcriptomics of Floral Development of the Distylous Species Lithospermum multiflorum
Cited by: 14
Author(s): James I. Cohen
Software Mentions: 3
Published: almost 8 years ago

10.3389/fpls.2020.607859

Evaluating Strategies for Adaptation to Climate Change in Grapevine Production–A Systematic Review
Cited by: 41
Author(s): Audrey Naulleau, Christian Gary, Laurent Prévot, Laure Hossard
Software Mentions: 3
Published: almost 4 years ago

10.3389/fpls.2018.01345

Co-expression and Transcriptome Analysis of Marchantia polymorpha Transcription Factors Supports Class C ARFs as Independent Actors of an Ancient Auxin Regulatory Module
Cited by: 37
Author(s): Eduardo Flores-Sandoval, Facundo Romani, John L. Bowman
Software Mentions: 3
Published: about 6 years ago

10.3389/fpls.2020.00633

Rhizospheric Organic Acids as Biostimulants: Monitoring Feedbacks on Soil Microorganisms and Biochemical Properties
Cited by: 78
Author(s): Sandra Macías-Benítez, A.M. García-Martínez, Pablo Caballero Jiménez, Juan M. González, Manuel Tejada, Juan Parrado
Software Mentions: 3
Published: over 4 years ago

10.3390/genes11091000

Comparative Transcriptome Analysis of Pine Trees Treated with Resistance-Inducing Substances against the Nematode Bursaphelenchus xylophilus
Cited by: 6
Author(s): Jung–Wook Park, Hee Won Jeon, Hyejung Jung, Hyun‐Hee Lee, Junheon Kim, Ae Ran Park, Namgyu Kim, Gil Soo Han, Jin-Cheol Kim, Young-Su Seo
Software Mentions: 3
Published: about 4 years ago

10.3390/genes11101128

Proteomics Reveals Distinct Changes Associated with Increased Gamma Radiation Resistance in the Black Yeast Exophiala dermatitidis
Cited by: 7
Author(s): Zachary Schultzhaus, Janna N. Schultzhaus, Jillian Romsdahl, Amy Chen, W. Judson Hervey, Dagmar H. Leary, Zheng Wang
Software Mentions: 3
Published: about 4 years ago

10.3390/genes11101187

Exaggerated Autophagy in Stanford Type A Aortic Dissection: A Transcriptome Pilot Analysis of Human Ascending Aortic Tissues
Cited by: 13
Author(s): Ze-Hua Zhou, Yan Liu, Xiyu Zhu, Xingming Tang, Yali Wang, Junxia Wang, Can Xu, Dongjin Wang, Jie Du, Qing Zhou
Software Mentions: 3
Published: about 4 years ago

10.1186/s13059-015-0697-y

The impact of read length on quantification of differentially expressed genes and splice junction detection
Cited by: 94
Author(s): Sagar Chhangawala, Gabe Rudy, Christopher E. Mason, Jeffrey Rosenfeld
Software Mentions: 3
Published: over 9 years ago

10.1007/s00417-021-05214-z

MicroRNAs in the aqueous humor of patients with different types of glaucoma
Cited by: 12
Author(s): Ewa Kosior‐Jarecka, Marcin Czop, Karolina Gasińska, Dominika Wróbel-Dudzińska, Daniel Zalewski, Anna Bogucka‐Kocka, Janusz Kocki, Tomasz Żarnowski
Software Mentions: 3
Published: over 3 years ago

10.1186/s13099-020-00394-1

Comparative genomics of Helicobacter pullorum from different countries
Cited by: 4
Author(s): Guilan Zhou, Hao Liang, Yixin Gu, Changyan Ju, Lihua He, Pengbo Guo, Zhujun Shao, Jianzhong Zhang, Maojun Zhang
Software Mentions: 3
Published: almost 4 years ago

10.1200/PO.18.00014

Impact of Variable RNA-Sequencing Depth on Gene Expression Signatures and Target Compound Robustness: Case Study Examining Brain Tumor (Glioma) Disease Progression
Cited by: 3
Author(s): Alexey Stupnikov, Paul G. O’Reilly, Caitríona E. McInerney, Aideen C. Roddy, Philip D. Dunne, Alan Gilmore, Hayley Patricia Ellis, Tom Flannery, Estelle Healy, Stuart McIntosh, Kienan I. Savage, Kathreena M. Kurian, Frank Emmert‐Streib, Kevin M. Prise, Manuel Salto-Tellez, Darragh G. McArt
Software Mentions: 3
Published: about 6 years ago

10.1186/s13568-021-01191-y

Characterization and comparison of the bacterial community between complete intensive and extensive feeding patterns in pigs
Cited by: 3
Author(s): Xinjian Li, Mingyu Wang, Yansong Xue, Dongdong Duan, Cong Liu, Jianwei Ye, Xuelei Han, Ruimin Qiao, Kejun Wang
Software Mentions: 3
Published: over 3 years ago

10.3390/proteomes8030024

Profiling of Inflammatory Proteins in Plasma of HIV-1-Infected Children Receiving Antiretroviral Therapy
Cited by: 9
Author(s): Mahlet Lemma, Stefan Petkov, Yonas Bekele, Beyene Petros, Rawleigh Howe, Francesca Chiodi
Software Mentions: 3
Published: about 4 years ago

10.1038/srep28075

Cellular responses to HSV-1 infection are linked to specific types of alterations in the host transcriptome
Cited by: 52
Author(s): Benxia Hu, Li X, Yongxia Huo, Yafen Yu, Qiuping Zhang, Guijun Chen, Yaping Zhang, Nigel W. Fraser, Dong‐Dong Wu, Jumin Zhou
Software Mentions: 3
Published: over 8 years ago

10.1038/s41598-017-09963-y

Infection with the Makona variant results in a delayed and distinct host immune response compared to previous Ebola virus variants
Cited by: 30
Author(s): Krista Versteeg, Andrea Menicucci, Courtney Woolsey, Chad E. Mire, Joan B. Geisbert, Robert W. Cross, Krystle N. Agans, Daniel R. Jeske, Ilhem Messaoudi, Thomas W. Geisbert
Software Mentions: 3
Published: about 7 years ago

10.1038/s41598-017-18575-5

Experimental infection of cattle with Mycobacterium tuberculosis isolates shows the attenuation of the human tubercle bacillus for cattle
Cited by: 45
Author(s): Bernardo Villarreal‐Ramos, Stefan Berg, Adam O. Whelan, Sébastien Holbert, Florence Carreras, Francisco J. Salguero, Bhagwati Khatri, Kerri M. Malone, Kévin Rue-Albrecht, Ronan G. Shaughnessy, Alicia Smyth, Gobena Ameni, Abraham Aseffa, Pierre Sarradin, Nathalie Winter, Martin Vordermeier, Stephen V. Gordon
Software Mentions: 3
Published: almost 7 years ago

Projects: cran: VennDiagram

Papers Mentioning VennDiagram 626