Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: UpSetR

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/UpSetR

A More Scalable Alternative to Venn and Euler Diagrams for Visualizing Intersecting Sets
18 versions
Latest release: over 5 years ago
15 dependent packages
15,935 downloads last month

Papers Mentioning UpSetR 319

Identification and Analysis of Genes Underlying Bone Mineral Density by Integrating Microarray Data of Osteoporosis
Cited by: 7
Author(s): Haihong Zhang, Jinghui Feng, Zhiguo Lin, Shuya Wang, Yan Wang, Siming Dai, Weisi Kong, Yanli Wang, Zhiyi Zhang
Software Mentions: 1
Published: about 4 years ago

10.1016/j.dib.2019.105029

Proteome dataset of mouse macrophage cell line infected with tick-borne encephalitis virus
Cited by: 2
Author(s): А. Л. Русанов, Alexander A. Stepanov, Victor G. Zgoda, Anna L. Kaysheva, Martin Selinger, Hana Mašková, Dmitry S. Loginov, Ján Štěrba, Libor Grubhoffer, Н. Г. Лузгина
Software Mentions: 1
Published: almost 5 years ago

10.1186/s40478-020-01040-2

Distinct genomic subclasses of high-grade/progressive meningiomas: NF2-associated, NF2-exclusive, and NF2-agnostic
Cited by: 56
Author(s): Erik Williams, Sandro Santagata, Hiroaki Wakimoto, Ganesh M. Shankar, Fred G. Barker, Radwa Sharaf, Abhinav K. Reddy, Phoebe Spear, Brian M. Alexander, Jeffrey S. Ross, Priscilla K. Brastianos, Daniel P. Cahill, Shakti Ramkissoon, Tareq A. Juratli
Software Mentions: 1
Published: about 4 years ago

10.1038/s42003-021-02576-2

High light and temperature reduce photosynthetic efficiency through different mechanisms in the C4 model Setaria viridis
Cited by: 19
Author(s): Cheyenne M Anderson, Erin M Mattoon, Ningning Zhang, Eric Becker, William McHargue, Jiani Yang, Dhruv Patel, Oliver Dautermann, Scott A. M. McAdam, Tonantzin Tarín, Sunita Pathak, Tom J Avenson, Jeffrey C. Berry, Maxwell Braud, Krishna Niyogi, Margaret E. Wilson, Dmitri A. Nusinow, Rodrigo Vargas, Kirk J. Czymmek, Andrea L. Eveland, Ru Zhang
Software Mentions: 1
Published: about 3 years ago

10.3390/ijms19092730

Transcriptomic Signature of Right Ventricular Failure in Experimental Pulmonary Arterial Hypertension: Deep Sequencing Demonstrates Mitochondrial, Fibrotic, Inflammatory and Angiogenic Abnormalities
Cited by: 34
Author(s): François Potus, Charles Hindmarch, Kimberly J. Dunham‐Snary, Jeff Stafford, Stephen L. Archer
Software Mentions: 1
Published: about 6 years ago

10.3390/ijms19103123

Comparative Genome-Wide Survey of Single Nucleotide Variation Uncovers the Genetic Diversity and Potential Biomedical Applications among Six Macaca Species
Cited by: 3
Author(s): Jing Li, Zhenxin Fan, Tsieh Sun, Changjun Peng, Bisong Yue
Software Mentions: 1
Published: about 6 years ago

10.1016/S2214-109X(20)30344-2

Patterns of individual non-treatment during multiple rounds of mass drug administration for control of soil-transmitted helminths in the TUMIKIA trial, Kenya: a secondary longitudinal analysis
Cited by: 12
Author(s): William E. Oswald, Stella Kepha, Katherine E. Halliday, Carlos Mcharo, Th’uva Safari, Stefan Witek-McManus, Robert J. Hardwick, Elizabeth Allen, Sultani Matendechero, Simon Brooker, Sammy M. Njenga, Charles Mwandawiro, Roy M. Anderson, Rachel L. Pullan
Software Mentions: 1
Published: about 4 years ago

10.3390/cancers12041057

Unique Role of Histone Methyltransferase PRDM8 in the Tumorigenesis of Virus-Negative Merkel Cell Carcinoma
Cited by: 5
Author(s): Elias Orouji, Wiebke K. Peitsch, Azadeh Orouji, Roland Houben, Jochen Utikal
Software Mentions: 1
Published: over 4 years ago

10.3390/cancers13081852

Sensitivity and Resistance of Oncogenic RAS-Driven Tumors to Dual MEK and ERK Inhibition
Cited by: 2
Author(s): Antonella Catalano, Mojca Adlesic, Thorsten Kaltenbacher, R. Klar, Joachim Albers, Philipp Seidel, Laura P Brandt, Tomáš Hejhal, Philipp Busenhart, Niklas Röhner, Kyra Zodel, Kornelia Fritsch, Peter J. Wild, Justus Duyster, Ralph Fritsch, Tilman Brummer, Ian J. Frew
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pone.0198847

Comparing the validity of different ICD coding abstraction strategies for sepsis case identification in German claims data
Cited by: 55
Author(s): Carolin Fleischmann, Daniel Thomas-Rüddel, Anna Schettler, Daniel Schwarzkopf, Angelika Stacke, Christopher W. Seymour, Christoph Haas, Ulf Dennler, Konrad Reinhart
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0216849

Computational and experimental analysis of the glycophosphatidylinositol-anchored proteome of the human parasitic nematode Brugia malayi
Cited by: 4
Author(s): Fana B. Mersha, Leslie K. Cortes, Ashley N. Luck, Colleen McClung, Cristian Ruse, Christopher H. Taron, Jeremy M. Foster
Software Mentions: 1
Published: about 5 years ago

10.1186/s13068-017-0901-2

Network reconstruction and systems analysis of plant cell wall deconstruction by Neurospora crassa
Cited by: 33
Author(s): Areejit Samal, James P. Craig, Samuel T. Coradetti, J. Philipp Benz, James A. Eddy, Nathan D. Price, N. Louise Glass
Software Mentions: 1
Published: about 7 years ago

10.1186/s12866-020-01878-5

Novel multiplex real-time PCR assays reveal a high prevalence of diarrhoeagenic Escherichia coli pathotypes in healthy and diarrhoeal children in the south of Vietnam
Cited by: 6
Author(s): Vu Thuy Duong, Le Thi Phuong Tu, Ha Thanh Tuyen, Le Thi Quynh Nhi, James Campbell, Pham Van Minh, Hoang Le Phuc, Tran Thi Hong Chau, Nguyễn Minh Ngọc, Lu Lan, Claire Jenkins, Iruka N. Okeke, Ellen E. Higginson, Stephen Baker
Software Mentions: 1
Published: over 4 years ago

10.3390/plants9060780

Transcriptome Analysis of Wounding in the Model Grass Lolium temulentum
Cited by: 5
Author(s): James E. Dombrowski, Brent Kronmiller, Vicky G. Hollenbeck, Ruth C. Martin
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-021-84403-6

Alternative splicing events implicated in carcinogenesis and prognosis of thyroid gland cancer
Cited by: 8
Author(s): Zeng-Hong Wu, Yun Tang, Yue Zhou
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-020-62287-2

Genome-wide identification of essential genes in Mycobacterium intracellulare by transposon sequencing — Implication for metabolic remodeling
Cited by: 7
Author(s): Yoshitaka Tateishi, Yusuke Minato, Anthony D. Baughn, H. Ohnìshì, Akihito Nishiyama, Yuriko Ozeki, Sohkichi Matsumoto
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-018-22631-z

IMPPAT: A curated database of Indian Medicinal Plants, Phytochemistry And Therapeutics
Cited by: 267
Author(s): Karthikeyan Mohanraj, Bagavathy Shanmugam Karthikeyan, R.P. Vivek-Ananth, Roop Chand, Saraf Aparna, Pattulingam Mangalapandi, Areejit Samal
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-017-16495-y

Comparative genome analysis of the vineyard weed endophyte Pseudomonas viridiflava CDRTc14 showing selective herbicidal activity
Cited by: 22
Author(s): Abdul Samad, Livio Antonielli, Angela Sessitsch, Stéphane Compant, Friederike Trognitz
Software Mentions: 1
Published: almost 7 years ago

10.1002/jcp.28840

Systematic analysis of alternative splicing signature unveils prognostic predictor for kidney renal clear cell carcinoma
Cited by: 41
Author(s): Jukun Song, Yong Da Liu, Jiaming Su, Dongbo Yuan, Fa Sun, Jianguo Zhu
Software Mentions: 1
Published: over 5 years ago