Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: TESS

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/TESS

Diversification Rate Estimation and Fast Simulation of Reconstructed Phylogenetic Trees under Tree-Wide Time-Heterogeneous Birth-Death Processes Including Mass-Extinction Events
8 versions
Latest release: over 2 years ago
3 dependent packages
450 downloads last month

Papers Mentioning TESS 359

10.3390/insects11050285
Population Genetic Structure of Codling Moth, Cydia pomonella (L.) (Lepidoptera: Tortricidae), in Different Localities and Host Plants in Chile
Cited by: 5
Author(s): A Basoalto, Claudio C. Ramı́rez, Blas Lavandero, Luis Devotto, Tomislav Curkovic, Pierre Franck, Eduardo Contreras
Software Mentions: 1
Published: over 4 years ago
10.3390/insects11110797
Using Moderate Transgene Expression to Improve the Genetic Sexing System of the Australian Sheep Blow Fly Lucilia cuprina
Cited by: 5
Author(s): Ying Yan, Megan E Williamson, Maxwell J. Scott
Software Mentions: 1
Published: about 4 years ago
10.1001/jamanetworkopen.2019.18281
Association Between Objectively Measured Sleep Duration and Symptoms of Psychiatric Disorders in Middle Childhood
Cited by: 28
Author(s): Bror M. Ranum, Lars Wichstrøm, Ståle Pallesen, Jonas Falch-Madsen, Marte Kathrine Halse, Silje Steinsbekk
Software Mentions: 1
Published: almost 5 years ago
10.5435/JAAOSGlobal-D-20-00256
Complications and Survivorship of Distal Humeral Allograft Reconstruction After Tumor Resection: Literature Review and Case Series
Cited by: 5
Author(s): Pramod Kamalapathy, Akash Shah, Kevin A. Raskin, Joseph H. Schwab, Santiago Lozano-Calderón
Software Mentions: 1
Published: almost 4 years ago
10.1186/s12929-017-0361-9
Lrp, a global regulator, regulates the virulence of Vibrio vulnificus
Cited by: 12
Author(s): Yu-Chi Ho, Feng Ru Hung, Chao Hui Weng, Wei Ting Li, Tzu Hung Chuang, Tsung Lin Liu, Ching Yuan Lin, Chien Jung Lo, Chun-Liang Chen, Jen Wei Chen, Masayuki Hashimoto, Lien-I Hor
Software Mentions: 1
Published: over 7 years ago
10.1111/jcmm.13123
The activity of the carbamoyl phosphate synthase 1 promoter in human liver-derived cells is dependent on hepatocyte nuclear factor 3-beta
Cited by: 20
Author(s): Zhanfei Chen, Nanhong Tang, Xiaoqian Wang, Yanling Chen
Software Mentions: 1
Published: over 7 years ago
10.1371/journal.ppat.1001229
Glacial Refugia in Pathogens: European Genetic Structure of Anther Smut Pathogens on Silene latifolia and Silene dioica
Cited by: 72
Author(s): Elodie Vercken, Michaël C. Fontaine, Pierre Gladieux, Michael E. Hood, Odile Jonot, Tatiana Giraud
Software Mentions: 1
Published: almost 14 years ago
10.1371/journal.ppat.1004302
The Murine Gammaherpesvirus Immediate-Early Rta Synergizes with IRF4, Targeting Expression of the Viral M1 Superantigen to Plasma Cells
Cited by: 12
Author(s): Brigid M. O’Flaherty, Tanushree Soni, Brian S. Wakeman, Samuel H. Speck
Software Mentions: 1
Published: over 10 years ago
10.1073/pnas.1912625116
Maternal diabetes induces autism-like behavior by hyperglycemia-mediated persistent oxidative stress and suppression of superoxide dismutase 2
Cited by: 49
Author(s): Xiumin Wang, Jianping Lu, Weiguo Xie, Xiao‐Yun Lu, Yujie Liang, Min Li, Zichen Wang, Xiaodong Huang, Mingxi Tang, Donald W. Pfaff, Yaping Tang, Paul Yao
Software Mentions: 1
Published: about 5 years ago
10.1186/1465-9921-12-73
A promoter SNP rs4073T>A in the common allele of the interleukin 8 gene is associated with the development of idiopathic pulmonary fibrosis via the IL-8 protein enhancing mode
Cited by: 63
Author(s): Mi-Hyun Ahn, Byung‐Lae Park, Shin‐Hwa Lee, Sung Woo Park, Jong‐Sook Park, Dojin Kim, An‐Soo Jang, Jai-Soung Park, Hye-Sun Shin, Soo‐Taek Uh, Yang-Ki Kim, Young Whan Kim, Sung Koo Han, Ki‐Suck Jung, Kye Young Lee, Sung Hwan Jeong, Jeong Woong Park, Byoung Whui Choi, In Won Park, Man Pyo Chung, Hyoung Doo Shin, Jin Woo Song, Dong Soon Kim, Choon-Sik Park, Young‐Soo Shim
Software Mentions: 1
Published: almost 13 years ago
10.1155/2012/171342
A Systematic Review of the Recent Quality of Life Studies in Adult Extremity Sarcoma Survivors
Cited by: 31
Author(s): Melissa Tang, Donald J. W. Pan, David Castle, Peter F. M. Choong
Software Mentions: 1
Published: almost 13 years ago
10.1155/2017/6197525
Cross-Cultural Adaptation, Translation, and Validation of the Toronto Extremity Salvage Score for Extremity Bone and Soft Tissue Tumor Patients in Netherlands
Cited by: 11
Author(s): Julie J. Willeumier, C. W. P. G. van der Wal, Robert J. P. van der Wal, P.D. Sander Dijkstra, T. P. M. Vliet Vlieland, Michiel A. J. van de Sande
Software Mentions: 1
Published: almost 8 years ago
10.1155/2018/6846275
A Longitudinal Study of Functional Outcomes in Patients with Limb Salvage Surgery for Soft Tissue Sarcoma
Cited by: 8
Author(s): Eunsun Oh, Sung Wook Seo, Kwang Joon Han
Software Mentions: 1
Published: almost 7 years ago
10.1038/srep14408
The AP-1 transcription factor homolog Pf-AP-1 activates transcription of multiple biomineral proteins and potentially participates in Pinctada fucata biomineralization
Cited by: 21
Author(s): Xiangnan Zheng, Minzhang Cheng, Xiang Liu, Jian Liang, Liping Xie, Rongqing Zhang
Software Mentions: 1
Published: about 9 years ago
10.1038/srep16090
A transgenic embryonic sexing system for the Australian sheep blow fly Lucilia cuprina
Cited by: 44
Author(s): Ying Yan, Maxwell J. Scott
Software Mentions: 1
Published: about 9 years ago
10.1038/srep18968
Impact of the 2010 Deepwater Horizon oil spill on population size and genetic structure of horse flies in Louisiana marshes
Cited by: 28
Author(s): Claudia Husseneder, Jennifer R. Donaldson, Lane D. Foil
Software Mentions: 1
Published: almost 9 years ago
10.1038/srep33758
The PRKD1 promoter is a target of the KRas-NF-κB pathway in pancreatic cancer
Cited by: 17
Author(s): Heike Döppler, Richard Panayiotou, Elizabeth M. Reid, Willibroad Maimo, Ligia I. Bastea, Peter Störz
Software Mentions: 1
Published: about 8 years ago
10.1038/srep34044
CRHunter: integrating multifaceted information to predict catalytic residues in enzymes
Cited by: 13
Author(s): Jun Sun, Jia Wang, Dan Xiong, Jian Hu, Rong Liu
Software Mentions: 1
Published: about 8 years ago
10.1038/srep42006
NF-κB regulates neuronal ankyrin-G via a negative feedback loop
Cited by: 7
Author(s): Hans-Georg König, Robert Schwamborn, Silke Andresen, Sinéad Kinsella, Orla Watters, Beau J. Fenner, Jochen H.M. Prehn
Software Mentions: 1
Published: almost 8 years ago
10.1038/srep43221
Repression of Human T-lymphotropic virus type 1 Long Terminal Repeat sense transcription by Sp1 recruitment to novel Sp1 binding sites
Cited by: 6
Author(s): Sylvain Fauquenoy, Gwenaëlle Robette, Anna Kula, Caroline Vanhulle, Sophie Bouchat, Nadège Delacourt, Anthony Rodari, Céline Marban, Christian Schwartz, Arsène Burny, Olivier Rohr, Benoît Van Driessche, Carine Van Lint
Software Mentions: 1
Published: over 7 years ago
10.1038/srep46451
Massive introgression drives species radiation at the range limit of Anopheles gambiae
Cited by: 26
Author(s): José L. Vicente, Christopher S. Clarkson, Beniamino Caputo, Bruno Gomes, Marco Pombi, Carla A. Sousa, Tiago Antão, João Dinis, Giordano Bottà, Emiliano Mancini, Vincenzo Petrarca, Daniel Mead, Eleanor Drury, James Stalker, Alistair Miles, Dominic P. Kwiatkowski, Martin J. Donnelly, Amabélia Rodrigues, Alessandra della Torre, David Weetman, João Pinto
Software Mentions: 1
Published: over 7 years ago
10.1038/srep46746
Klf5 Mediates Odontoblastic Differentiation through Regulating Dentin-Specific Extracellular Matrix Gene Expression during Mouse Tooth Development
Cited by: 15
Author(s): Zhuo Chen, Qi Zhang, Han Wang, Wentong Li, Feng Wang, Chao Wan, Shengjue Deng, Hui Chen, Yuqing Yin, Xiaoyan Li, Zhijian Xie, Shuo Chen
Software Mentions: 1
Published: over 7 years ago
10.1038/s41598-017-03116-x
Quaternary history, population genetic structure and diversity of the cold-adapted Alpine newt Ichthyosaura alpestris in peninsular Italy
Cited by: 17
Author(s): Andrea Chiocchio, Roberta Bisconti, Mauro Zampiglia, Giuseppe Nascetti, Daniele Canestrelli
Software Mentions: 1
Published: over 7 years ago
10.1038/s41598-017-14192-4
Atmospheric Beacons of Life from Exoplanets Around G and K Stars
Cited by: 25
Author(s): Vladimir Airapetian, Charles H. Jackman, Martin G. Mlynczak, W. C. Danchi, L. A. Hunt
Software Mentions: 1
Published: about 7 years ago
10.1038/s41598-018-23092-0
Grass Carp Prolactin Gene: Structural Characterization and Signal Transduction for PACAP-induced Prolactin Promoter Activity
Cited by: 3
Author(s): Cheng Yuan Lin, Jin Bai, Miao He, Anderson O. L. Wong
Software Mentions: 1
Published: over 6 years ago
10.1038/s41598-018-31535-x
Hybridization and extensive mitochondrial introgression among fire salamanders in peninsular Italy
Cited by: 20
Author(s): Roberta Bisconti, Daniele Porretta, Paola Arduino, Giuseppe Nascetti, Daniele Canestrelli
Software Mentions: 1
Published: about 6 years ago
10.1038/s41598-018-31442-1
Recovery of horse fly populations in Louisiana marshes following the Deepwater Horizon oil spill
Cited by: 7
Author(s): Claudia Husseneder, Jong‐Seok Park, Lane D. Foil
Software Mentions: 1
Published: about 6 years ago
10.1038/s41598-019-49954-9
Safety of transcutaneous electrical sensory stimulation of the neck in terms of vital parameters in dysphagia rehabilitation
Cited by: 9
Author(s): Shinsuke Nagami, Keisuke Maeda, Shusei Fukunaga, M. Ikeno, Yoshitaka Oku
Software Mentions: 1
Published: about 5 years ago
10.1038/s41598-020-79046-y
Reconstructing hotspots of genetic diversity from glacial refugia and subsequent dispersal in Italian common toads (Bufo bufo)
Cited by: 12
Author(s): Andrea Chiocchio, Jan W. Arntzen, Í‪ñigo Martínez-Solano, W. de Vries, Roberta Bisconti, Alice Pezzarossa, Luigi Maiorano, Daniele Canestrelli
Software Mentions: 1
Published: almost 4 years ago
10.1038/s41598-021-91938-1
A transgenic female killing system for the genetic control of Drosophila suzukii
Cited by: 8
Author(s): Marc F. Schetelig, Jonas Schwirz, Ying Yan
Software Mentions: 1
Published: over 3 years ago
10.1038/s41598-021-94521-w
Publisher Correction: Reconstructing hotspots of genetic diversity from glacial refugia and subsequent dispersal in Italian common toads (Bufo bufo)
Cited by: 0
Author(s): Andrea Chiocchio, Jan W. Arntzen, Í‪ñigo Martínez-Solano, W. de Vries, Roberta Bisconti, Alice Pezzarossa, Luigi Maiorano, Daniele Canestrelli
Software Mentions: 1
Published: over 3 years ago
10.3390/s19132840
Astrotourism and Night Sky Brightness Forecast: First Probabilistic Model Approach
Cited by: 4
Author(s): Eleazar C-Sánchez, Agustín J. Sánchez Medina, Jesús B. Alonso-Hernández, Augusto Voltes-Dorta
Software Mentions: 1
Published: over 5 years ago
10.1186/s40064-016-2818-9
Cross-cultural adaptation and validation of the Chinese version of Toronto Extremity Salvage Score for patients with extremity sarcoma
Cited by: 11
Author(s): Leilei Xu, Ming‐Hui Sun, Weixiang Sun, Xiaodong Qin, Zezhang Zhu, Shoufeng Wang
Software Mentions: 1
Published: over 8 years ago
10.1097/RMR.0000000000000205
Magnetic Resonance Imaging of the Musculoskeletal System at 7T
Cited by: 29
Author(s): Vladimír Juráš, Vladı́mir Mlynárik, Pavol Szomolányi, Ladislav Valkovič, Siegfried Trattnig
Software Mentions: 1
Published: over 5 years ago
10.1002/humu.21292
Characterization of aryl hydrocarbon receptor interacting protein (AIP) mutations in familial isolated pituitary adenoma families
Cited by: 153
Author(s): Susana Igreja, Harvey S Chahal, Peter King, Graeme B. Bolger, Umasuthan Srirangalingam, Leonardo Guasti, J. Paul Chapple, Giampaolo Trivellin, Maria Gueorguiev, Katie Guegan, Karen Stals, Bernard Khoo, Ajith Kumar, Sian Ellard, Ashley Grossman, Márta Korbonits
Software Mentions: 1
Published: over 14 years ago
10.5402/2013/926025
Variations in the Regulatory Region of Alpha S1-Casein Milk Protein Gene among Tropically Adapted Indian Native (<i>Bos Indicus</i>) Cattle
Cited by: 6
Author(s): Amit Kishore, Manishi Mukesh, Ranbir Chander Sobti, Bishnu Prasad Mishra, Monika Sodhi
Software Mentions: 1
Published: almost 12 years ago
10.1186/s12966-017-0528-5
Body composition impacts appetite regulation in middle childhood. A prospective study of Norwegian community children
Cited by: 21
Author(s): Silje Steinsbekk, Clare Llewellyn, Alison Fildes, Lars Wichstrøm
Software Mentions: 1
Published: over 7 years ago
10.1186/1756-9966-28-129
Transcription factor Sp1 induces ADAM17 and contributes to tumor cell invasiveness under hypoxia
Cited by: 53
Author(s): Alexandra Szalad, Mark Katakowski, Xuguang Zheng, Feng Jiang, Michael Chopp
Software Mentions: 1
Published: about 15 years ago
10.1186/1756-8722-3-15
CD7 in acute myeloid leukemia: correlation with loss of wild-type CEBPA, consequence of epigenetic regulation
Cited by: 20
Author(s): Sonja Röhrs, Michaela Scherr, Julia Romani, Margarete Zaborski, Hans Drexler, Hilmar Quentmeier
Software Mentions: 1
Published: over 14 years ago
10.3390/ijerph18063067
Surveillance of U.S. Corporate Filings Provides a Proactive Approach to Inform Tobacco Regulatory Research Strategy
Cited by: 6
Author(s): Samantha Emma Sarles, Edward Hensel, Risa J Robinson
Software Mentions: 1
Published: over 3 years ago
10.1673/031.011.11001
Genetic Heterogeneity in a Cyclical Forest Pest, the Southern Pine Beetle,<i>Dendroctonus frontalis</i>, is Differentiated Into East and West Groups in the Southeastern United States
Cited by: 12
Author(s): Natalie M. Schrey, Aaron W. Schrey, Edward J. Heist, John D. Reeve
Software Mentions: 1
Published: over 13 years ago
10.3892/or.2013.2859
Pthlh, a promising cancer modifier gene in rat tongue carcinogenesis
Cited by: 5
Author(s): Hirohiko Suwa, Masato Hirano, Kouji Kawarada, Motohiko Nagayama, Michiko Ehara, T. Muraki, Hayase Shisa, Aiko Sugiyama, Masahiro Sugimoto, Hiroshi Hayashi, Motoo Kitano, Jun‐ichi Tanuma
Software Mentions: 1
Published: about 11 years ago
10.3390/ijms12020865
Comparison of Bayesian Clustering and Edge Detection Methods for Inferring Boundaries in Landscape Genetics
Cited by: 132
Author(s): Toni Safner, Mark P. Miller, Brad H. McRae, Marie‐Josée Fortin, Stéphanie Manel
Software Mentions: 1
Published: almost 14 years ago
10.3390/ijms161025014
MyoD Is a Novel Activator of Porcine FIT1 Gene by Interacting with the Canonical E-Box Element during Myogenesis
Cited by: 6
Author(s): Chi Yan, Bingtao Hao, Jun He, Zhuqing Ren, Dequan Xu, Yan Xiong, Bo Zuo
Software Mentions: 1
Published: about 9 years ago
10.3390/ijms17121908
Histone H3 Methyltransferase Suv39h1 Prevents Myogenic Terminal Differentiation by Repressing MEF2 Activity in Muscle Cells
Cited by: 5
Author(s): Wei Jin, Yangyang Shang, Jian Peng, Siwen Jiang
Software Mentions: 1
Published: almost 8 years ago
10.3390/ijms18112380
Fibrin-Enhanced Canonical Wnt Signaling Directs Plasminogen Expression in Cementoblasts
Cited by: 10
Author(s): Saeed Ur Rahman, Chan Ho Park, Jeong‐Hwa Baek, Hyun‐Mo Ryoo, Kyung Mi Woo
Software Mentions: 1
Published: about 7 years ago
10.3390/ijms19041035
Genetic Variants in STAT3 Promoter Regions and Their Application in Molecular Breeding for Body Size Traits in Qinchuan Cattle
Cited by: 22
Author(s): Sen Wu, Yaning Wang, Yue Ning, Hongwei Guo, Xiaoyu Wang, Le Zhang, Rajwali Khan, Gong Chen, Hongbao Wang, Zan Liu
Software Mentions: 1
Published: over 6 years ago
10.3390/ijms19103161
cAMP/Protein Kinase A Signaling Inhibits Dlx5 Expression via Activation of CREB and Subsequent C/EBPβ Induction in 3T3-L1 Preadipocytes
Cited by: 9
Author(s): Hye-Lim Lee, Abdul Qadir, Hyun-Jung Park, Eun-Kyung Chung, Yun‐Sil Lee, Kyung Mi Woo, Hyun‐Mo Ryoo, Hyun Jeong Kim, Jeong‐Hwa Baek
Software Mentions: 1
Published: about 6 years ago
10.1186/1477-5751-3-7
Despite WT1 binding sites in the promoter region of human and mouse nucleoporin glycoprotein 210, WT1 does not influence expression of GP210
Cited by: 3
Author(s): Magnus Olsson, Milton A. English, Jacqueline M. Mason, Jonathan D. Licht, Peter Ekblom
Software Mentions: 1
Published: almost 20 years ago
10.18632/oncotarget.7740
Chronic inflammation contributes to the development of hepatocellular carcinoma by decreasing miR-122 levels
Cited by: 57
Author(s): Changfei Li, Mengmeng Deng, Jun Hu, Xin Li, Lizhao Chen, Ying Ju, Junli Hao, Songdong Meng
Software Mentions: 1
Published: over 8 years ago
10.18632/oncotarget.11737
A novel application of E1A in combination therapy with EGFR-TKI treatment in breast cancer
Cited by: 8
Author(s): Chih-Ming Su, Ting Chang, Hui‐Ping Hsu, Hui Huang Lai, Jie Ning Li, Yu Jhen Lyu, Kuang Tai Kuo, Ming Te Huang, Jen Liang Su, Pai Sheng Chen
Software Mentions: 1
Published: about 8 years ago
10.1186/s13018-017-0524-0
Percutaneous transforaminal endoscopic surgery (PTES) for symptomatic lumbar disc herniation: a surgical technique, outcome, and complications in 209 consecutive cases
Cited by: 47
Author(s): Yutong Gu, Zhanfeng Cui, Hongwei Shao, Yun Ye, Ai-qun Gu
Software Mentions: 1
Published: almost 8 years ago
10.2174/1874210600802010078
Carbonyl Reductase 3 (CBR3) Mediates 9-cis-Retinoic Acid-Induced Cytostatis and is a Potential Prognostic Marker for Oral Malignancy
Cited by: 4
Author(s): Shuri Ohkura-Hada, Nobuo Kondoh, Akiyuki Hada, Masaaki Arai, Yutaka Yamazaki, Masanobu Shindoh, Yoshimasa Kitagawa, Masayuki Takahashi, Toshifumi Ando, Yasunori Sato, Mikio Yamamoto
Software Mentions: 1
Published: over 16 years ago
10.1186/1479-5876-9-161
c-Jun NH2-terminal kinase activation is essential for up-regulation of LC3 during ceramide-induced autophagy in human nasopharyngeal carcinoma cells
Cited by: 64
Author(s): Ting Sun, Dan Dan Li, Lin Lin Wang, Liang Xia, Jian Guo, Zhi‐Zhong Guan, Gong Kan Feng, Xiao‐Feng Zhu
Software Mentions: 1
Published: about 13 years ago
10.1371/journal.pone.0123384
Genetic Variation, Structure, and Gene Flow in a Sloth Bear (Melursus ursinus) Meta-Population in the Satpura-Maikal Landscape of Central India
Cited by: 60
Author(s): Trishna Dutta, Sandeep Sharma, Jesús E. Maldonado, Hemendra Singh Panwar, John Seidensticker
Software Mentions: 1
Published: over 9 years ago
10.1093/aobpla/plx065
Population genetic analysis reveals barriers and corridors for gene flow within and among riparian populations of a rare plant
Cited by: 13
Author(s): Tanya Helena Hevrøy, Michael L. Moody, Siegfried L. Krauss
Software Mentions: 1
Published: almost 7 years ago
10.1192/pb.bp.114.048736
Development of a compassion-focused and contextual behavioural environment and validation of the Therapeutic Environment Scales (TESS)
Cited by: 3
Author(s): David Veale, Sarah Miles, Iona Naismith, Maria Adélia Minghelli Pieta, Paul Gilbert
Software Mentions: 1
Published: almost 9 years ago
10.1186/s12858-014-0025-2
The promoter of cell growth- and RNA protection-associated SND1 gene is activated by endoplasmic reticulum stress in human hepatoma cells
Cited by: 11
Author(s): Sandra Armengol, Enara Arretxe, Leire Enzunza, Sarai Mula, Begoña Ochoa, Yolanda Chico, Marı́a José Martı́nez
Software Mentions: 1
Published: almost 10 years ago
10.1186/1471-2105-6-121
Cited by: 19
Author(s): Stefania Bortoluzzi, Alessandro Coppe, Andrea Bisognin, Cinzia Pizzi, Gian Antonio Danieli
Software Mentions: 1
Published: almost 20 years ago
10.1186/1471-2105-9-539
Enhanced Bayesian modelling in BAPS software for learning genetic structures of populations
Cited by: 738
Author(s): Jukka Corander, Pekka Marttinen, Jukka Sirén, Jing Tang
Software Mentions: 1
Published: almost 16 years ago
10.1186/1471-2105-12-S1-S49
Discriminative structural approaches for enzyme active-site prediction
Cited by: 4
Author(s): Tsuyoshi Kato, Nozomi Nagano
Software Mentions: 1
Published: almost 14 years ago
10.1186/1471-2105-6-127
Phylogenetic reconstruction of ancestral character states for gene expression and mRNA splicing data
Cited by: 12
Author(s): Roald Rossnes, Ingvar Eidhammer, David A. Liberles
Software Mentions: 1
Published: over 19 years ago
10.1186/1471-2105-8-226
Recruitment of rare 3-grams at functional sites: Is this a mechanism for increasing enzyme specificity?
Cited by: 3
Author(s): Dror Tobi, İvet Bahar
Software Mentions: 1
Published: over 17 years ago
10.1186/1471-2105-11-47
BSSF: a fingerprint based ultrafast binding site similarity search and function analysis server
Cited by: 25
Author(s): Bing Xiong, Jie Wu, David L. Burk, Mengzhu Xue, Hualiang Jiang, Jingkang Shen
Software Mentions: 1
Published: almost 15 years ago
10.1186/1472-6750-8-28
Design of a zinc finger protein binding a sequence upstream of the A20 gene
Cited by: 4
Author(s): Yong Wei, Dajun Ying, Chun‐Li Hou, Xiaoping Chen, Chen Zhu
Software Mentions: 1
Published: over 16 years ago
10.1186/1472-6750-12-72
Identification of a novel enhancer that binds Sp1 and contributes to induction of cold-inducible RNA-binding protein (cirp) expression in mammalian cells
Cited by: 40
Author(s): Yasuhiko Sumitomo, Hiroaki Higashitsuji, Hiroaki Higashitsuji, Yu Liu, Takanori Fujita, Toshiharu Sakurai, Marco M. Candeias, Katsuhiko Itoh, Tsutomu Chiba, Jun Fujita
Software Mentions: 1
Published: about 12 years ago
10.1186/1471-2407-6-158
Down regulation of PSA by C/EBPα is associated with loss of AR expression and inhibition of PSA promoter activity in the LNCaP cell Line
Cited by: 21
Author(s): Hong Yin, Hanna S. Radomska, Daniel G. Tenen, Jonathan Glass
Software Mentions: 1
Published: over 18 years ago
10.1186/1471-2407-7-83
BRIP1 (BACH1) variants and familial breast cancer risk: a case-control study
Cited by: 32
Author(s): Bernd Frank, Kari Hemminki, Alfons Meindl, Barbara Wappenschmidt, Christian Sutter, Marion Kiechle, Peter Bugert, Rita K. Schmutzler, Claus R. Bartram, Barbara Burwinkel
Software Mentions: 1
Published: over 17 years ago
10.1186/s12885-018-4266-0
Amphotericin B suppresses M2 phenotypes and B7-H1 expression in macrophages to prevent Raji cell proliferation
Cited by: 12
Author(s): Jing Zhang, Dongqing Cao, Shuangquan Yu, Lingchao Chen, Daolin Wei, Chen Shen, Lin Zhuang, Qian Wang, Xiaoping Xu, Tong Yin
Software Mentions: 1
Published: over 6 years ago
10.1186/s12885-015-1761-4
The autophagy GABARAPL1 gene is epigenetically regulated in breast cancer models
Cited by: 39
Author(s): Éric Hervouet, Aurore Claude-Taupin, Thierry Gauthier, Valérie Perez, Annick Fraîchard, Pascale Adami, Gilles Despouy, Franck Monnien, Marie‐Paule Algros, Michèle Jouvenot, Régis Delage-Mourroux, Michaël Boyer-Guittaut
Software Mentions: 1
Published: about 9 years ago
10.1186/1471-2407-12-445
Correlation between Slug transcription factor and miR-221 in MDA-MB-231 breast cancer cells
Cited by: 44
Author(s): Elisabetta Lambertini, Andrea Lolli, Federica Vezzali, Letizia Penolazzi, Roberto Gambari, Roberta Piva
Software Mentions: 1
Published: about 12 years ago
10.1186/s12861-015-0080-y
The pattern of congenital heart defects arising from reduced Tbx5 expression is altered in a Down syndrome mouse model
Cited by: 12
Author(s): Renita C. Polk, Péter Gergics, Jeffrey D. Steimle, Huiqing Li, Ivan P. Moskowitz, Sally A. Camper, Roger H. Reeves
Software Mentions: 1
Published: over 9 years ago
10.1186/s12898-017-0156-6
Genetic diversity and structure related to expansion history and habitat isolation: stone marten populating rural–urban habitats
Cited by: 19
Author(s): Anna Wereszczuk, Raphaël Leblois, Andrzej Zalewski
Software Mentions: 1
Published: almost 7 years ago
10.1186/s12862-016-0831-9
Revealing hidden species diversity in closely related species using nuclear SNPs, SSRs and DNA sequences – a case study in the tree genus Milicia
Cited by: 33
Author(s): Kasso Daïnou, Céline Blanc-Jolivet, Бернд Деген, Priscilla P. Kimani, Dyana Ndiade-Bourobou, Armel Donkpegan, Félicien Tosso, Esra Kaymak, Nils Bourland, Jean‐Louis Doucet, Olivier J. Hardy
Software Mentions: 1
Published: almost 8 years ago
10.1186/s12862-014-0276-y
The population genetics of wild chimpanzees in Cameroon and Nigeria suggests a positive role for selection in the evolution of chimpanzee subspecies
Cited by: 25
Author(s): MA Mitchell, Sabrina Locatelli, Lora Ghobrial, Amy Pokempner, Paul R. Sesink Clee, Ekwoge E. Abwe, Aaron Nicholas, Louis Nkembi, Nicola M. Anthony, Bethan J. Morgan, Roger Fotso, Martine Peeters, Beatrice H. Hahn, Mary Katherine Gonder
Software Mentions: 1
Published: almost 10 years ago
10.1186/s12862-017-1093-x
Phylogeography of Eomecon chionantha in subtropical China: the dual roles of the Nanling Mountains as a glacial refugium and a dispersal corridor
Cited by: 32
Author(s): Shiping Tian, Yixuan Kou, Zhirong Zhang, Yingtong Lin, Derong Li, Jordi López‐Pujol, Dashan Fan, Zhiyong Zhang
Software Mentions: 1
Published: almost 7 years ago
10.1186/1471-2148-9-171
A species delimitation approach in the Trochulus sericeus/hispiduscomplex reveals two cryptic species within a sharp contact zone
Cited by: 48
Author(s): A. Dépraz, Jacques Hausser, Markus Pfenninger
Software Mentions: 1
Published: over 15 years ago
10.1186/1471-2148-10-197
Species delineation using Bayesian model-based assignment tests: a case study using Chinese toad-headed agamas (genus Phrynocephalus)
Cited by: 27
Author(s): Daniel W. A. Noble, Yin Qi, Jinzhong Fu
Software Mentions: 1
Published: over 14 years ago
10.1186/1471-2148-13-64
The genetic structure of a Venturia inaequalis population in a heterogeneous host population composed of different Malusspecies
Cited by: 26
Author(s): Thibault Leroy, Christophe Lemaire, Frank Dunemann, Bruno Le Cam
Software Mentions: 1
Published: over 11 years ago
10.1186/s12862-014-0263-3
Clock model makes a large difference to age estimates of long-stemmed clades with no internal calibration: a test using Australian grasstrees
Cited by: 37
Author(s): Michael D. Crisp, Nate B. Hardy, Lyn G. Cook
Software Mentions: 1
Published: almost 10 years ago
10.1186/s12862-018-1122-4
Population structure of Venturia inaequalis, a causal agent of apple scab, in response to heterogeneous apple tree cultivation
Cited by: 13
Author(s): Monika Michalecka, S. Masny, Thibault Leroy, Joanna Puławska
Software Mentions: 1
Published: almost 7 years ago
10.1186/1471-2156-11-9
Dispersal and population structure at different spatial scales in the subterranean rodent Ctenomys australis
Cited by: 39
Author(s): Matías S. Mora, Fernando J. Mapelli, Oscar E. Gaggiotti, Marcelo J. Kittlein, Enrique P. Lessa
Software Mentions: 1
Published: almost 15 years ago
10.1186/1471-2156-12-22
Myostatin-2 gene structure and polymorphism of the promoter and first intron in the marine fish Sparus aurata: evidence for DNA duplications and/or translocations
Cited by: 20
Author(s): Elisabeth Nadjar-Boger, Bruria Funkenstein
Software Mentions: 1
Published: almost 14 years ago
10.1186/1471-2156-11-111
Regulatory polymorphisms in the bovine Ankyrin 1 gene promoter are associated with tenderness and intramuscular fat content
Cited by: 21
Author(s): Ozlem Aslan, T. Sweeney, Anne Maria Mullen, Ruth M. Hamill
Software Mentions: 1
Published: almost 14 years ago
10.1186/1471-2156-13-66
SNP variation in the promoter of the PRKAG3gene and association with meat quality traits in pig
Cited by: 40
Author(s): M. F. Ryan, Ruth M. Hamill, Aisling O’Halloran, Grace Davey, Jean McBryan, Anne Maria Mullen, Chris McGee, M. Gispert, O. I. Southwood, T. Sweeney
Software Mentions: 1
Published: over 12 years ago
10.1186/1471-2164-8-441
TFCONES: A database of vertebrate transcription factor-encoding genes and their associated conserved noncoding elements
Cited by: 31
Author(s): Alison Lee, Yuchen Yang, Sydney Brenner, Byrappa Venkatesh
Software Mentions: 1
Published: almost 17 years ago
10.1186/1471-2164-8-203
In silico comparative genomic analysis of GABAA receptor transcriptional regulation
Cited by: 17
Author(s): Christopher Joyce
Software Mentions: 1
Published: almost 18 years ago
10.1186/1471-2164-14-68
PuF, an antimetastatic and developmental signaling protein, interacts with the Alzheimer’s amyloid-β precursor protein via a tissue-specific proximal regulatory element (PRE)
Cited by: 7
Author(s): Debomoy K. Lahiri, Bryan Maloney, Jack T. Rogers, Yuan‐Wen Ge
Software Mentions: 1
Published: almost 12 years ago
10.1186/1471-2164-15-514
L-carnitine and PPARα-agonist fenofibrate are involved in the regulation of Carnitine Acetyltransferase (CrAT) mRNA levels in murine liver cells
Cited by: 6
Author(s): Klemens Kienesberger, Aniko Ginta Pordes, Thomas Georg Völk, Roland Hofbauer
Software Mentions: 1
Published: over 10 years ago
10.1186/1471-2164-13-153
Characterization of the transcriptome profiles related to globin gene switching during in vitro erythroid maturation
Cited by: 22
Author(s): Biaoru Li, Lianghao Ding, Wei Li, Michael D. Story, Betty S. Pace
Software Mentions: 1
Published: over 12 years ago
10.1186/s12909-018-1196-0
Identifying low test-taking effort during low-stakes tests with the new Test-taking Effort Short Scale (TESS) – development and psychometrics
Cited by: 12
Author(s): Katrin Schüttpelz-Brauns, Martina Kadmon, Claudia Kiessling, Yassin Karay, Margarita Gestmann, Juliane E. Kämmer
Software Mentions: 1
Published: over 6 years ago
10.1186/1471-2350-7-49
Identification of novel functional sequence variants in the gene for peptidase inhibitor 3
Cited by: 17
Author(s): Mosharaf Chowdhury, Helena Kuivaniemi, Roberto Romero, Samuel S. Edwin, Tinnakorn Chaiworapongsa, Gerard Tromp
Software Mentions: 1
Published: over 18 years ago
10.1186/1471-2350-10-27
Functional and genetic analysis in type 2 diabetes of Liver X receptor alleles – a cohort study
Cited by: 28
Author(s): Ingrid Dahlman, Maria Nilsson, Harvest F. Gu, Cécile Lecœur, Suad Efendić, Claes Göran Östenson, Kerstin Brismar, Jan‐Åke Gustafsson, Philippe Froguel, Martine Vaxillaire, Karin Dahlman-Wright, Knut R. Steffensen
Software Mentions: 1
Published: over 15 years ago
10.1186/1471-2350-12-77
Novel variants in the PRDX6 Gene and the risk of Acute Lung Injury following major trauma
Cited by: 11
Author(s): Melanie Rushefski, Richard Aplenc, Nuala J. Meyer, Mingyao Li, Rui Feng, Paul N. Lanken, Robert Gallop, Scarlett L. Bellamy, A. Russell Localio, Sheldon I. Feinstein, Aron B. Fisher, Steven Μ. Albelda, Jason D. Christie
Software Mentions: 1
Published: over 13 years ago
10.1186/1471-2350-14-47
Genetic variants of MARCO are associated with susceptibility to pulmonary tuberculosis in a Gambian population
Cited by: 33
Author(s): Dawn M. E. Bowdish, Kaori Sakamoto, Nathan A. Lack, Philip C. Hill, Giorgio Sirugo, Melanie J. Newport, Siamon Gordon, Adrian V. S. Hill, Fredrick O Vannberg
Software Mentions: 1
Published: over 11 years ago
10.1186/1471-2199-13-8
EGF activates TTP expression by activation of ELK-1 and EGR-1 transcription factors
Cited by: 21
Author(s): Magdalena Florkowska, Piotr Tymoszuk, Aleksandra Balwierz, Anna Skucha, Jakub Kochan, Mateusz Wawro, Krystyna Stalińska, Aneta Kasza
Software Mentions: 1
Published: over 12 years ago
10.1186/1471-2199-11-13
SLUG: a new target of lymphoid enhancer factor-1 in human osteoblasts
Cited by: 37
Author(s): Elisabetta Lambertini, Tiziana Franceschetti, Elena Torreggiani, Letizia Penolazzi, Antonio Luigi Pastore, Stefano Pelucchi, Roberto Gambari, Roberta Piva
Software Mentions: 1
Published: almost 15 years ago
10.1186/1471-2199-9-91
Identification of two regulatory binding sites which confer myotube specific expression of the mono-ADP-ribosyltransferase ART1 gene
Cited by: 11
Author(s): M. Friedrich, Levin Böhlig, R. Kirschner, Kurt Engeland, Sunna Hauschildt
Software Mentions: 1
Published: almost 17 years ago
10.1186/1471-2199-8-41
Leptin induces inflammation-related genes in RINm5F insulinoma cells
Cited by: 24
Author(s): Paul Hekerman, Julia Zeidler, Stefanie Korfmacher, Simone Bamberg-Lemper, Holger Knobelspies, Lennart Zabeau, Jan Tavernier, Walter Becker
Software Mentions: 1
Published: over 17 years ago
10.1186/1471-2199-8-19
NF-κB mediates the transcription of mouse calsarcin-1 gene, but not calsarcin-2, in C2C12 cells
Cited by: 10
Author(s): Heng Wang, Shulin Yang, Eun Kyung Yang, Zhengmao Zhu, Yulian Mu, Feng Shi, Kui Li
Software Mentions: 1
Published: over 17 years ago