Ecosyste.ms: Papers

10.1007/s11214-018-0576-4

The Space Physics Environment Data Analysis System (SPEDAS)
Cited by: 295
Author(s): V. Angelopoulos, P. Cruce, Alexander Drozdov, E. W. Grimes, Nick Hatzigeorgiu, David A. King, D. E. Larson, James W. Lewis, J. M. McTiernan, D. A. Roberts, Chuck Russell, Tomoaki Hori, Yoshiya Kasahara, Atsushi Kumamoto, A. Matsuoka, Yukinaga Miyashita, Yoshizumi Miyoshi, I. Shinohara, Masaaki Teramoto, J. Faden, A. J. Halford, Michael McCarthy, R. M. Millan, J. G. Sample, David M. Smith, L. A. Woodger, A. Masson, Ayris Narock, Kazushi Asamura, T. F. Chang, Che‐Ming Chiang, Y. Kazama, K. Keika, Shoya Matsuda, Takehiko Segawa, K. Seki, Shoji Motomizu, Sunny Wing-Yee Tam, Norio Umemura, B. J. Wang, S. Y. Wang, R. J. Redmon, J. V. Rodriguez, H. J. Singer, J. D. Vandegriff, Shuji Abe, M. Nosé, Atsuki Shinbori, Yoshimasa Tanaka, S. Ueno, L. Andersson, P. Dunn, Christopher Fowler, J. S. Halekas, Takuya Hara, Yuki Harada, C. O. Lee, R. J. Lillis, D. L. Mitchell, M. R. Argall, K. R. Bromund, J. L. Burch, I. J. Cohen, Michael Galloy, B. L. Giles, A. N. Jaynes, O. Le Contel, M. Oka, T. D. Phan, Brian M. Walsh, J. H. Westlake, F. D. Wilder, S. D. Bale, R. Livi, M. Pulupa, P. L. Whittlesey, A. W. DeWolfe, B. Harter, Edson Mello Lucas, U. Auster, J. W. Bonnell, C. M. Cully, E. Donovan, R. E. Ergun, H. U. Frey, B. J. Jackel, A. Keiling, H. Korth, J. P. McFadden, Yoshihiro Nishimura, Ferdinand Plaschke, P. Robert, D. L. Turner, J. M. Weygand, R. M. Candey, Russell D. Johnson, T. J. Kovalick, M. H. Liu, R. E. McGuire, A. W. Breneman, K. Kersten, P. Schroeder
Software Mentions: 11
Published: almost 6 years ago

10.1186/1471-2105-9-493

EMAAS: An extensible grid-based Rich Internet Application for microarray data analysis and management
Cited by: 13
Author(s): Geraint Barton, James Abbott, Norie Chiba, Daniel Huang, Yanyan Huang, Marko Krznarić, J. Mack-Smith, Ammar Saleem, Brad T. Sherman, Brijesh K. Tiwari, Christopher Tomlinson, Timothy J. Aitman, John Darlington, Laurence Gamé, Michael J.E. Sternberg, Sarah Butcher
Software Mentions: 6
Published: almost 16 years ago

10.3389/fninf.2018.00018

Credibility, Replicability, and Reproducibility in Simulation for Biomedicine and Clinical Applications in Neuroscience
Cited by: 32
Author(s): Lealem Mulugeta, Andrew Drach, Ahmet Erdemir, C. Anthony Hunt, Marc Horner, Joy P. Ku, Jerry G. Myers, Rajanikanth Vadigepalli, William W. Lytton
Software Mentions: 4
Published: over 6 years ago

10.3389/fncir.2014.00068

Imaging ATUM ultrathin section libraries with WaferMapper: a multi-scale approach to EM reconstruction of neural circuits
Cited by: 204
Author(s): Kenneth J. Hayworth, Josh Morgan, Richard Schalek, Daniel R. Berger, David G. C. Hildebrand, Jeff W. Lichtman
Software Mentions: 4
Published: over 10 years ago

10.3758/s13428-018-01193-y

PsychoPy2: Experiments in behavior made easy
Cited by: 1,852
Author(s): Jonathan W. Peirce, Jeremy Gray, Sol Simpson, Michael R. MacAskill, Richard Höchenberger, Hiroyuki Sogo, Erik K. Kastman, Jonas Kristoffer Lindeløv
Software Mentions: 4
Published: almost 6 years ago

10.3389/fninf.2018.00046

Reproducing Polychronization: A Guide to Maximizing the Reproducibility of Spiking Network Models
Cited by: 32
Author(s): Roman Pauli, Philipp Weidel, Susanne Kunkel, Abigail Morrison
Software Mentions: 3
Published: over 6 years ago

10.1186/s40064-016-2897-7

Influence analysis of Github repositories
Cited by: 35
Author(s): Yan Hu, Jun Zhang, Xiaomei Bai, Shuo Yu, Zaiyou Yang
Software Mentions: 3
Published: over 8 years ago

10.1186/1752-0509-3-34

Version control of pathway models using XML patches
Cited by: 8
Author(s): Peter Saffrey, Richard Orton
Software Mentions: 3
Published: over 15 years ago

10.1007/s10270-019-00725-0

ChronoSphere: a graph-based EMF model repository for IT landscape models
Cited by: 9
Author(s): Martin Haeusler, Thomas Trojer, Johannes Kessler, Matthias Farwick, Emmanuel Nowakowski, Ruth Breu
Software Mentions: 3
Published: over 5 years ago

10.3390/s16060759

Computer-Aided Sensor Development Focused on Security Issues
Cited by: 9
Author(s): Andrzej Białas
Software Mentions: 3
Published: over 8 years ago

10.1371/journal.pone.0193562

TeamWATCH: Visualizing development activities using a 3-D city metaphor to improve conflict detection and team awareness
Cited by: 3
Author(s): En Ye, Xin Ye, Chang Liu
Software Mentions: 3
Published: over 6 years ago

10.1186/1471-2105-12-167

A formal MIM specification and tools for the common exchange of MIM diagrams: an XML-Based format, an API, and a validation method
Cited by: 22
Author(s): Augustin Luna, Evrim I Karac, Margot Sunshine, Lucas Chang, Ruth Nussinov, Mirit I. Aladjem, Kurt W. Kohn
Software Mentions: 2
Published: over 13 years ago

10.1371/journal.pone.0211486

A dataset to facilitate automated workflow analysis
Cited by: 10
Author(s): Tony Allard, Paul Alvino, Leslie Shing, Allan B. Wollaber, Joseph S. M. Yuen
Software Mentions: 2
Published: over 5 years ago

10.1155/2011/879716

Brainstorm: A User-Friendly Application for MEG/EEG Analysis
Cited by: 2,321
Author(s): François Tadel, Sylvain Baillet, John C. Mosher, Dimitrios Pantazis, Richard M. Leahy
Software Mentions: 2
Published: almost 14 years ago

10.1186/s13326-015-0036-y

Ontology-based representation and analysis of host-Brucella interactions
Cited by: 8
Author(s): Yuling Lin, Zuoshuang Xiang, Yongqun He
Software Mentions: 2
Published: about 9 years ago

10.3389/fpubh.2021.490604

Effective Adoption of Tablets for Psychodiagnostic Assessments in Rural Burundi: Evidence for the Usability and Validity of Mobile Technology in the Example of Differentiating Symptom Profiles in AMISOM Soldiers 1 Year After Deployment
Cited by: 2
Author(s): Roland Weierstall, Anselm Crombach, Corina Nandi, Manassé Bambonye, Thomas Probst, Rüdiger Pryss
Software Mentions: 1
Published: over 3 years ago

10.1186/1471-2105-10-280

EDGE3: A web-based solution for management and analysis of Agilent two color microarray experiments
Cited by: 24
Author(s): Aaron L. Vollrath, Adam Smith, Mark Craven, Christopher A. Bradfield
Software Mentions: 1
Published: about 15 years ago

10.12669/pjms.341.14074

Author-based journal selection system that helps authors save time in article submission
Cited by: 0
Author(s): Onur Öztürk, Fatih Ileri
Software Mentions: 1
Published: almost 7 years ago

10.3390/s16101635

3D Printed Dry EEG Electrodes
Cited by: 76
Author(s): Sammy Krachunov, Alexander J. Casson
Software Mentions: 1
Published: about 8 years ago

10.3897/zookeys.979.56863

A new species of Rain Frog (Brevicipitidae, Breviceps) endemic to Angola
Cited by: 5
Author(s): Stuart V. Nielsen, Werner Conradie, Luis M. P. Ceríaco, Aaron M. Bauer, Matthew P. Heinicke, Edward L. Stanley, David C. Blackburn
Software Mentions: 1
Published: about 4 years ago

10.1186/1471-2105-13-116

OLSVis: an animated, interactive visual browser for bio-ontologies
Cited by: 21
Author(s): Steven Vercruysse, Aravind Venkatesan, Martin Kuiper
Software Mentions: 1
Published: over 12 years ago

10.3389/fmolb.2021.693710

A Primer on the oxDNA Model of DNA: When to Use it, How to Simulate it and How to Interpret the Results
Cited by: 23
Author(s): Aditya Sengar, Thomas E. Ouldridge, Oliver Henrich, Lorenzo Rovigatti, Petr Šulc
Software Mentions: 1
Published: over 3 years ago