cran: STAR | Projects | Ecosyste.ms: Papers

10.3390/ijms20071689

A Transcriptomic Insight into the Impact of Colon Cancer Cells on Mast Cells
Cited by: 10
Author(s): Yingxin Yu, Bart R. Blokhuis, Johan Garssen, Frank A. Redegeld
Software Mentions: 1
Published: over 7 years ago

10.1590/1678-4685-GMB-2019-0215

The combined analysis as the best strategy for Dual RNA-Seq mapping
Cited by: 5
Author(s): Eliandro Espindula, Edilena Reis Sperb, Evelise Bach, Luciane Maria Pereira Passaglia
Software Mentions: 1
Published: over 7 years ago

10.1186/s13287-021-02485-5

Divergence in chondrogenic potential between in vitro and in vivo of adipose- and synovial-stem cells from mouse and human
Cited by: 2
Author(s): Ryota Chijimatsu, Shinji Miwa, Gensuke Okamura, Junya Miyahara, Naohiro Tachibana, Hisatoshi Ishikura, Junya Higuchi, Yuji Maenohara, Shinsaku Tsuji, Shin Sameshima, Kentarô Takagi, Keiu Nakazato, Kohei Kawaguchi, Ryota Yamagami, Hiroshi Inui, Shuji Taketomi, Sakae Tanaka, Taku Saito
Software Mentions: 1
Published: almost 5 years ago

10.1007/s12015-018-9851-8

Generation of Isogenic Controls for In Vitro Disease Modelling of X-Chromosomal Disorders
Cited by: 16
Author(s): Lisa D. Hinz, Stephanie D. Hoekstra, Kyoko Watanabe, Daniëlle Posthuma, Vivi M. Heine
Software Mentions: 1
Published: over 7 years ago

10.3390/genes12081107

Gene Expression Analysis Provides New Insights into the Mechanism of Intramuscular Fat Formation in Japanese Black Cattle
Cited by: 13
Author(s): Shuji Ueda, Mana Hosoda, Ken‐ichi Yoshino, Minoru Yamanoue, Yasuhito Shirai
Software Mentions: 1
Published: almost 5 years ago

10.3390/cancers13153853

Identification and Functional Characterization of Novel MYC-Regulated Long Noncoding RNAs in Group 3 Medulloblastoma
Cited by: 4
Author(s): Jessica Rea, Annamaria Carissimo, Daniela Trisciuoglio, Barbara Illi, Daniel Picard, Marc Remke, Pietro Laneve, Elisa Caffarelli
Software Mentions: 1
Published: almost 5 years ago

10.3390/ijms21041397

Integrated Metabolomic and Transcriptomic Analysis to Characterize Cutin Biosynthesis between Low- and High-Cutin Genotypes of Capsicum chinense Jacq
Cited by: 14
Author(s): Purushothaman Natarajan, Tolulope Abodunrin Akinmoju, Padma Nimmakayala, Carlos Lopez-Ortiz, Marleny García-Lozano, Benjamin Thompson, John R. Stommel, Umesh K. Reddy
Software Mentions: 1
Published: over 6 years ago

10.3389/fmicb.2020.603509

Differential Expression of Viral Transcripts From Single-Cell RNA Sequencing of Moderate and Severe COVID-19 Patients and Its Implications for Case Severity
Cited by: 30
Author(s): Teng Liu, Peilin Jia, Bingliang Fang, Zhongming Zhao
Software Mentions: 1
Published: over 5 years ago

10.1155/2019/4957806

Equine Adipose-Derived Mesenchymal Stromal Cells Release Extracellular Vesicles Enclosing Different Subsets of Small RNAs
Cited by: 22
Author(s): Stefano Capomaccio, Katia Cappelli, Cinzia Bazzucchi, Mauro Coletti, Rodolfo Gialletti, Franco Moriconi, Fabrizio Passamonti, Marco Pepe, Stefano Petrini, Samanta Mecocci, Maurizio Silvestrelli, Luisa Pascucci
Software Mentions: 1
Published: over 7 years ago

10.3390/cancers13020361

Identification of a Dexamethasone Mediated Radioprotection Mechanism Reveals New Therapeutic Vulnerabilities in Glioblastoma
Cited by: 6
Author(s): Paula Aldaz, Jaione Auzmendi-Iriarte, Maika Durántez, Irene Lasheras-Otero, Estefanía Carrasco‐García, María Victoria Zelaya, L. Bragado, Ana Olías-Arjona, Larraitz Egaña, Nicolás Samprón, Idoia Morilla, Marta Redondo-Muñoz, M. Rico, Massimo Squatrito, Marta Maria-Alonso, Joaquín Fernández‐Irigoyen, Enrique Santamaría, Iñaki M Larráyoz, Claudia Wellbrock, Ander Matheu, Imanol Arozarena
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2017.01424

Aspergillus niger Secretes Citrate to Increase Iron Bioavailability
Cited by: 27
Author(s): Dorett I Odoni, Merlijn P van Gaal, Tom Schonewille, Juan Antonio Tamayo-Ramos, Vítor A. P. Martins dos Santos, María Suárez-Diez, Peter J. Schaap
Software Mentions: 1
Published: almost 9 years ago

10.3390/cancers13081908

Activation of Cilia-Independent Hedgehog/GLI1 Signaling as a Novel Concept for Neuroblastoma Therapy
Cited by: 6
Author(s): Anke Koeniger, Anna Brichkina, Iris Nee, Lukas Dempwolff, Anna Hupfer, Ilya Galperin, Florian Finkernagel, Andrea Nist, Thorsten Stiewe, Till Adhikary, Wibke E. Diederich, Matthias Lauth
Software Mentions: 1
Published: about 5 years ago

10.1002/sctm.20-0392

Aging Modulates the Effects of Ischemic Injury Upon Mesenchymal Cells within the Renal Interstitium and Microvasculature
Cited by: 7
Author(s): Isaac Shaw, Eoin D. O’Sullivan, Angela Oliveira Pisco, Gary Borthwick, Kevin M. Gallagher, Bruno Péault, Jeremy Hughes, David A. Ferenbach
Software Mentions: 1
Published: about 5 years ago

10.3389/fmicb.2018.00826

The Algicidal Fungus Trametes versicolor F21a Eliminating Blue Algae via Genes Encoding Degradation Enzymes and Metabolic Pathways Revealed by Transcriptomic Analysis
Cited by: 14
Author(s): Wei Dai, Xiaolin Chen, Xuewen Wang, Zimu Xu, Xueyan Gao, Chaosheng Jiang, Ruining Deng, Guomin Han
Software Mentions: 1
Published: about 8 years ago

10.1016/j.str.2020.05.002

How IGF-II Binds to the Human Type 1 Insulin-like Growth Factor Receptor
Cited by: 31
Author(s): Yibin Xu, Nicholas S. Kirk, Hariprasad Venugopal, Mai B. Margetts, Tristan I. Croll, Jarrod J. Sandow, Andrew I. Webb, Carlie Delaine, Briony E. Forbes, Michael C. Lawrence
Software Mentions: 1
Published: about 6 years ago

10.1007/s00520-020-05539-1

Digital health for optimal supportive care in oncology: benefits, limits, and future perspectives
Cited by: 123
Author(s): Matti Aapro, Paolo Bossi, Arvind Dasari, Lesley Fallowfield, Pere Gascón, Melissa A. Geller, Karin Jordan, Joseph W. Kim, Karina Martin, S. Porzig
Software Mentions: 1
Published: about 6 years ago

10.3389/fmicb.2021.613697

Evaluation of Host Immune Response in Diabetic Foot Infection Tissues Using an RNA Sequencing-Based Approach
Cited by: 3
Author(s): Fatemah Sadeghpour Heravi, Martha Zakrzewski, Hamidreza Aboulkheyr Estarabadi, Karen Vickery, Honghua Hu
Software Mentions: 1
Published: over 5 years ago

10.3390/cancers13092151

ATRX Alteration Contributes to Tumor Growth and Immune Escape in Pleomorphic Sarcomas
Cited by: 8
Author(s): Lucie Darmusey, Gaëlle Pérot, Noémie Thébault, Sophie Le Guellec, Nelly Desplat, Laëtitia Gaston, Lucile Delespaul, Tom Lesluyes, Élodie Darbo, Anne Gomez‐Brouchet, Élodie Richard, Jessica Baud, Laura Leroy, Jean‐Michel Coindre, Jean‐Yves Blay, Frédéric Chibon
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pbio.2004718

Polarization-resolved microscopy reveals a muscle myosin motor-independent mechanism of molecular actin ordering during sarcomere maturation
Cited by: 40
Author(s): Olivier Loison, Manuela Weitkunat, Aynur Kaya-Çopur, Camila Nascimento Alves, Till Matzat, Maria L. Spletter, Stefan Luschnig, Sophie Brasselet, Pierre-François Lenne, Frank Schnorrer
Software Mentions: 1
Published: about 8 years ago

10.3389/fmicb.2019.02168

Global Analysis of Cell Wall Genes Revealed Putative Virulence Factors in the Dermatophyte Trichophyton rubrum
Cited by: 15
Author(s): Maíra Pompeu Martins, Larissa Gomes Silva, Antônio Rossi, Pablo Rodrigo Sanches, Larissa Daniela Ribeiro de Souza, Nilce Maria Martinez-Rossi
Software Mentions: 1
Published: almost 7 years ago

10.3389/fmicb.2021.712564

Overexpression of mqsR in Xylella fastidiosa Leads to a Priming Effect of Cells to Copper Stress Tolerance
Cited by: 3
Author(s): Isis Gabriela Barbosa Carvalho, Marcus V. Merfa, Natália Sousa Teixeira-Silva, Paula Maria Moreira Martins, Marco Aurélio Takita, Alessandra Alves de Souza
Software Mentions: 1
Published: almost 5 years ago

10.3389/fmicb.2020.611080

Cold Adaptation Mechanisms of a Snow Alga Chlamydomonas nivalis During Temperature Fluctuations
Cited by: 7
Author(s): Zhao Peng, Gai Liu, Kaiyao Huang
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2019.01650

The Tsetse Fly Displays an Attenuated Immune Response to Its Secondary Symbiont, Sodalis glossinidius
Cited by: 15
Author(s): Katrien Trappeniers, Irina Matetovici, Jan Van Den Abbeele, Linda De Vooght
Software Mentions: 1
Published: almost 7 years ago

10.3389/fmicb.2020.568891

Editorial: MALDI-TOF MS Application for Susceptibility Testing of Microorganisms
Cited by: 4
Author(s): Karsten Becker, Sören Schubert
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2019.02305

Microbial Metabolic Capacity for Intestinal Folate Production and Modulation of Host Folate Receptors
Cited by: 81
Author(s): Melinda A. Engevik, Christina N. Morra, Daniel Röth, Kristen A. Engevik, Jennifer K. Spinler, Sridevi Devaraj, Sue E. Crawford, Mary K. Estes, Markus Kalkum, James Versalovic
Software Mentions: 1
Published: over 6 years ago

10.3389/fnint.2021.652218

Editorial: Sensory Processing Across the Lifespan: A 25-Year Initiative to Understand Neurophysiology, Behaviors, and Treatment Effectiveness for Sensory Processing
Cited by: 4
Author(s): Lucy Miller, Elysa J. Marco, Robyn Chu, Stephen Camarata
Software Mentions: 1
Published: about 5 years ago

10.3389/fimmu.2021.638469

Subversion of Host Innate Immunity by Rickettsia australis via a Modified Autophagic Response in Macrophages
Cited by: 9
Author(s): Jeremy Bechelli, Claire Smalley Rumfield, David H. Walker, Steven G. Widen, Kamil Khanipov, Rong Fang
Software Mentions: 1
Published: about 5 years ago

10.3390/cancers10100379

Identification of the Transcription Factor Relationships Associated with Androgen Deprivation Therapy Response and Metastatic Progression in Prostate Cancer
Cited by: 16
Author(s): Nikhil Sharma, Kathryn L. Pellegrini, Véronique Ouellet, Felipe Giuste, S. Ramalingam, Kenneth A. Watanabe, Éloïse Adam-Granger, Lucresse Fossouo, Sungyong You, Michael R. Freeman, Paula M. Vertino, Karen N. Conneely, Adeboye O. Osunkoya, Dominique Trudel, Anne‐Marie Mes‐Masson, John A. Petros, Fred Saad, Carlos S. Moreno
Software Mentions: 1
Published: over 7 years ago

10.7554/eLife.65104

Nucleo-cytoplasmic shuttling of splicing factor SRSF1 is required for development and cilia function
Cited by: 24
Author(s): Fiona Haward, Magdalena M. Maslon, Patricia L Yeyati, Nicolás Bellora, Jan N. Hansen, Stuart Aitken, Jennifer Lawson, Alex von Kriegsheim, Dagmar Wachten, Pleasantine Mill, Ian R. Adams, Javier F. Cáceres
Software Mentions: 1
Published: almost 5 years ago

10.3389/fimmu.2021.723196

HCV Cure With Direct-Acting Antivirals Improves Liver and Immunological Markers in HIV/HCV-Coinfected Patients
Cited by: 11
Author(s): Óscar Brochado-Kith, Isidoro Martı́nez, Juan Berenguer, Juan González‐García, Sergio Salgüero, Daniel Sepúlveda‐Crespo, Cristina Díez, Víctor Hontañón, Luis Ibáñez‐Samaniego, Leire Pérez‐Latorre, Amanda Fernández‐Rodríguez, María Ángeles Jiménez-Sousa, Salvador Resino
Software Mentions: 1
Published: almost 5 years ago

10.3390/ijms20184387

Differential Regulation of Anthocyanins in Green and Purple Turnips Revealed by Combined De Novo Transcriptome and Metabolome Analysis
Cited by: 62
Author(s): Hongmei Zhuang, Qian Lei, Huifang Liu, Hongwei Han, Qiang Wang, Zhonghua Tang, Yanming Ma, Hao Wang
Software Mentions: 1
Published: almost 7 years ago

10.3389/fimmu.2019.02889

HSV-2 Cellular Programming Enables Productive HIV Infection in Dendritic Cells
Cited by: 7
Author(s): Elisa Crisci, Cecilia Svanberg, Rada Ellegård, Mohammad Khalid, Julia Hellblom, Kazuki Okuyama, Paramita Bhattacharya, Sofia Nyström, Esaki Muthu Shankar, Kristina Eriksson, Marie Larsson
Software Mentions: 1
Published: over 6 years ago

10.3389/fimmu.2019.03033

Single Eye mRNA-Seq Reveals Normalisation of the Retinal Microglial Transcriptome Following Acute Inflammation
Cited by: 14
Author(s): Oliver H. Bell, David A Copland, Amy Ward, Lindsay B. Nicholson, Clemens Lange, Colin J Chu, Andrew D. Dick
Software Mentions: 1
Published: over 6 years ago

10.7554/eLife.23202

Tsc2 disruption in mesenchymal progenitors results in tumors with vascular anomalies overexpressing Lgals3
Cited by: 11
Author(s): Peter Klover, Rajesh L. Thangapazham, Jirō Katō, Wang Jian, Stasia A. Anderson, Victoria Hoffmann, Wendy K. Steagall, Shaowei Li, Elizabeth A McCart, Neera Nathan, Joshua D. Bernstock, Matthew D. Wilkerson, Clifton L. Dalgard, Joel Moss, Thomas N. Darling
Software Mentions: 1
Published: almost 9 years ago

10.3389/fimmu.2021.629391

Small Intestinal Tuft Cell Activity Associates With Energy Metabolism in Diet-Induced Obesity
Cited by: 6
Author(s): Pankaj Arora, Daniel S. Andersen, Janne Marie Moll, Niels Banhos Danneskiold‐Samsøe, Liqin Xu, Biaofeng Zhou, Georgios Kladis, Philipp Rausch, Christopher T. Workman, Karsten Kristiansen, Susanne Brix
Software Mentions: 1
Published: about 5 years ago

10.3390/cancers12051104

Genetic and Immune Changes Associated with Disease Progression under the Pressure of Oncolytic Therapy in A Neuroblastoma Outlier Patient
Cited by: 11
Author(s): Lidia Franco-Luzón, Sandra García-Mulero, Rebeca Sanz‐Pamplona, Gustavo J. Melén, David Ruano, Álvaro Lassaletta, Luís Madero, África González‐Murillo, Manuel Ramı́rez
Software Mentions: 1
Published: about 6 years ago

10.3389/fimmu.2019.00455

The Concerted Action of E2-2 and HEB Is Critical for Early Lymphoid Specification
Cited by: 13
Author(s): Thibault Bouderlique, Lucía Peña-Pérez, Shabnam Kharazi, Miriam Hils, Xiaoze Li, Aleksandra Krstić, Annick De Paepe, Christian Schachtrup, Charlotte Gustafsson, Dan Holmberg, Christian Schachtrup, Robert Månsson
Software Mentions: 1
Published: over 7 years ago

10.3389/fimmu.2018.00899

Complement-Opsonized HIV-1 Alters Cross Talk Between Dendritic Cells and Natural Killer (NK) Cells to Inhibit NK Killing and to Upregulate PD-1, CXCR3, and CCR4 on T Cells
Cited by: 12
Author(s): Rada Ellegård, Mohammad Khalid, Cecilia Svanberg, Hanna Holgersson, Ylva Thoren, Mirja Karolina Wittgren, Jorma Hinkula, Sofia Nyström, Esaki M. Shankar, Marie Larsson
Software Mentions: 1
Published: about 8 years ago

10.3389/fimmu.2019.01844

Maintenance of Functional CD57+ Cytolytic CD4+ T Cells in HIV+ Elite Controllers
Cited by: 23
Author(s): Chansavath Phetsouphanh, Daniel Aldridge, Emanuele Marchi, C. Mee Ling Munier, Jodi Meyerowitz, Lyle Murray, C.V. van Vuuren, Dominique Goedhals, Sarah Fidler, Anthony D. Kelleher, Paul Klenerman, John Frater
Software Mentions: 1
Published: almost 7 years ago

10.3389/fimmu.2020.575103

Evolutionarily Selected Overexpression of the Cytokine BAFF Enhances Mucosal Immune Response Against P. falciparum
Cited by: 3
Author(s): Valeria Lodde, Matteo Floris, Isabel Beerman, Rachel Munk, Rajan Guha, Maristella Steri, Valeria Orrù, Kotb Abdelmohsen, Peter D. Crompton, Myriam Gorospe, Maria Laura Idda, Francesco Cucca
Software Mentions: 1
Published: over 5 years ago

10.3389/fimmu.2020.629726

Proteinase-Mediated Macrophage Signaling in Psoriatic Arthritis
Cited by: 8
Author(s): Fatima Abji, Mozhgan Rasti, Alejandro Gómez‐Aristizábal, Carla Muytjens, Mahmoud Saifeddine, Koichiro Mihara, Majid Motahhari, Rajiv Gandhi, Sowmya Viswanathan, Morley D. Hollenberg, Κατερίνα Οικονομοπούλου, Vinod Chandran
Software Mentions: 1
Published: over 5 years ago

10.3389/fimmu.2019.00269

Requirement for Cyclic AMP/Protein Kinase A-Dependent Canonical NFκB Signaling in the Adjuvant Action of Cholera Toxin and Its Non-toxic Derivative mmCT
Cited by: 9
Author(s): Manuela Terrinoni, Jan Holmgren, Michael Lebens, Maximilian Larena
Software Mentions: 1
Published: over 7 years ago

10.3389/fimmu.2020.584310

Lung Secretoglobin Scgb1a1 Influences Alveolar Macrophage-Mediated Inflammation and Immunity
Cited by: 23
Author(s): Min Xu, Wei Yang, Xuanchuan Wang, D. K. Nayak
Software Mentions: 1
Published: almost 6 years ago

10.3389/fimmu.2018.00184

Identification of Casz1 as a Regulatory Protein Controlling T Helper Cell Differentiation, Inflammation, and Immunity
Cited by: 17
Author(s): Natarajan Bhaskaran, Zhihui Liu, Senthil S. Saravanamuthu, Chunhua Yan, Ying Hu, Lijin Dong, Peggy S. Zelenka, Lixin Zheng, Vassili Bletsos, Rachel Harris, Brenna Harrington, Aaron Weinberg, Carol J. Thiele, Fengchun Ye, Pushpa Pandiyan
Software Mentions: 1
Published: over 8 years ago

10.7554/eLife.53889

The E2 Marie Kondo and the CTLH E3 ligase clear deposited RNA binding proteins during the maternal-to-zygotic transition
Cited by: 24
Author(s): Michael Zavortink, Lauren N. Rutt, Svetlana Dzitoyeva, Jesslyn C Henriksen, Chloe Barrington, Danielle Y Bilodeau, Miranda Wang, Xiao Xiao Chen, Olivia S. Rissland
Software Mentions: 1
Published: about 6 years ago

10.3389/fimmu.2021.672498

Integrated Analysis of Omics Data Reveal AP-1 as a Potential Regulation Hub in the Inflammation-Induced Hyperalgesia Rat Model
Cited by: 0
Author(s): Xiaohui Zhu, Feng Li, Miqun Wang, Huibin Su, Xuedong Wu, Haiyan Qiu, Zhou Wang, Chunli Shan, Cancan Wang, Lei Wei
Software Mentions: 1
Published: about 5 years ago

10.3389/fimmu.2018.02138

Functional Inhibitory Siglec-6 Is Upregulated in Human Colorectal Cancer-Associated Mast Cells
Cited by: 33
Author(s): Yingxin Yu, Bart R. Blokhuis, Mara A P Diks, Ali Keshavarzian, Johan Garssen, Frank A. Redegeld
Software Mentions: 1
Published: almost 8 years ago

10.3389/fimmu.2018.02982

HMGN1 and R848 Synergistically Activate Dendritic Cells Using Multiple Signaling Pathways
Cited by: 25
Author(s): Masud Alam, De Yang, Anna Trivett, Thomas J. Meyer, Joost J. Oppenheim
Software Mentions: 1
Published: over 7 years ago

10.3390/ijms20184345

Functional Dissection of pri-miR-290~295 in Dgcr8 Knockout Mouse Embryonic Stem Cells
Cited by: 3
Author(s): Ming Shi, Jun Hao, Xiwen Wang, Le‐Qi Liao, Cao H, Yangming Wang
Software Mentions: 1
Published: almost 7 years ago

10.3389/fimmu.2019.00400

Blimp-1 Rather Than Hobit Drives the Formation of Tissue-Resident Memory CD8+ T Cells in the Lungs
Cited by: 70
Author(s): Felix M. Behr, Natasja A. M. Kragten, Thomas H. Wesselink, Benjamin Nota, René A. W. van Lier, Derk Amsen, Regina Stark, Pleun Hombrink, Klaas P.J.M. van Gisbergen
Software Mentions: 1
Published: over 7 years ago

10.7554/eLife.34985

Reduced expression of C/EBPβ-LIP extends health and lifespan in mice
Cited by: 19
Author(s): Christine Müller, Laura M Zidek, Tobias Ackermann, Tristan de Jong, Peng Liu, Verena Kliche, Mohamad Amr Zaini, Gertrud Kortman, Liesbeth Harkema, Dineke S. Verbeek, Jan Tuckermann, Julia von Maltzahn, Alain de Bruin, Victor Guryev, Zhaoqi Wang, Cornelis F. Calkhoven
Software Mentions: 1
Published: about 8 years ago

10.3389/fimmu.2019.02791

Adenovirus VA RNAI Blocks ASC Oligomerization and Inhibits NLRP3 Inflammasome Activation
Cited by: 22
Author(s): Mahmoud Darweesh, Wael Kamel, Mikhail A. Gavrilin, Göran Akusjärvi, Christina Svensson
Software Mentions: 1
Published: over 6 years ago

10.1002/fsn3.1115

Dual‐frequency ultrasound for ultrasonic‐assisted esterification
Cited by: 21
Author(s): Elahe Abedi, Kiana Pourmohammadi, Sahar Abbasi
Software Mentions: 1
Published: about 7 years ago

10.3390/ijms20194722

Overexpression of BpCUC2 Influences Leaf Shape and Internode Development in Betula pendula
Cited by: 9
Author(s): Chaoyi Liu, Huirong Xu, Rui Han, Shuo Wang, Guifeng Liu, Chen Su, Jiying Chen, Xiuyan Bian, Jing Jiang
Software Mentions: 1
Published: almost 7 years ago

10.1016/j.fcr.2016.09.011

Yield stability of selected rice breeding lines and donors across conditions of mild to moderately severe drought stress
Cited by: 52
Author(s): Rolando O. Torres, Amelia Henry
Software Mentions: 1
Published: about 8 years ago

10.7554/eLife.69951

Vaccination induces rapid protection against bacterial pneumonia via training alveolar macrophage in mice
Cited by: 17
Author(s): Hao Gu, Xi Zeng, Peng Li, Chuanying Xiang, Yangyang Zhou, Xiaomin Zhang, Jixin Zhang, Ning Wang, Gang Guo, Yan Li, Kaiyun Liu, Jiang Gu, Hao Zeng, Yuan Zhuang, Haibo Li, Jinyong Zhang, Weijun Zhang, Quanming Zou, Yun Shi
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.pgen.1007579

The temporal landscape of recursive splicing during Pol II transcription elongation in human cells
Cited by: 17
Author(s): Xiao‐Ou Zhang, Yu Fu, Haiwei Mou, Wen Xue, Zhiping Weng
Software Mentions: 1
Published: almost 8 years ago

10.1016/j.fcr.2017.10.007

Productivity trade-off with different water regimes and genotypes of rice under non-puddled conditions in Eastern India
Cited by: 23
Author(s): Ipsita Kar, Sudhir Yadav, Amit Kumar Mishra, Basanta Kumar Behera, Chandramani Khanda, Virender Kumar, Ashok Kumar
Software Mentions: 1
Published: about 8 years ago

10.12688/f1000research.13580.3

A host subtraction database for virus discovery in human cell line sequencing data
Cited by: 0
Author(s): Jason R. Miller, Kari A. Dilley, Derek M. Harkins, Timothy B. Stockwell, Reed S. Shabman, Granger Sutton
Software Mentions: 1
Published: about 7 years ago

10.12688/f1000research.44714.1

Draft genome assembly of the biofuel grass crop Miscanthus sacchariflorus
Cited by: 3
Author(s): Jose J De Vega, Iain S. Donnison, Sarah Dyer, Kerrie Farrar
Software Mentions: 1
Published: over 5 years ago

10.1038/s12276-020-00502-w

Lactobacillus fermentum promotes adipose tissue oxidative phosphorylation to protect against diet-induced obesity
Cited by: 10
Author(s): Young‐In Yoon, Gihyeon Kim, Myung‐Giun Noh, Jeong-Hyeon Park, Mongjoo Jang, Sungsoon Fang, Hansoo Park
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pgen.1007226

RNA helicase, DDX27 regulates skeletal muscle growth and regeneration by modulation of translational processes
Cited by: 32
Author(s): Alexis H Bennett, Marie-Françoise O’Donohue, Stacey R. Gundry, A CHAN, Jeffrey J. Widrick, Isabelle Draper, Anirban Chakraborty, Yi Zhou, Leonard I. Zon, Pierre‐Emmanuel Gleizes, Alan H. Beggs, Vandana Gupta
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pgen.1007787

FOXO1 regulates uterine epithelial integrity and progesterone receptor expression critical for embryo implantation
Cited by: 80
Author(s): Yasmin M. Vasquez, Xiaoqiu Wang, Margeaux Wetendorf, Heather L. Franco, Qianxing Mo, Tianyuan Wang, Rainer B. Lanz, Steven L. Young, Bruce A. Lessey, Thomas E. Spencer, John P. Lydon, Francesco J. DeMayo
Software Mentions: 1
Published: over 7 years ago

10.3390/ijms20215484

Whole-Genome and Transposed Duplication Contributes to the Expansion and Diversification of TLC Genes in Maize
Cited by: 12
Author(s): Weina Si, Tianlu Hang, Mingyue Guo, Zhe Chen, Qizhi Liang, Longjiang Gu, Tao Ding
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms21051902

Gene Polymorphisms in Boar Spermatozoa and Their Associations with Post-Thaw Semen Quality
Cited by: 19
Author(s): Anna Mańkowska, Paweł Brym, Łukasz Paukszto, J Jastrzebski, Leyland Fraser
Software Mentions: 1
Published: over 6 years ago

10.3390/plants9101393

In Silico Analyses of Autophagy-Related Genes in Rapeseed (Brassica napus L.) under Different Abiotic Stresses and in Various Tissues
Cited by: 5
Author(s): Elham Mehri Eshkiki, Zahra Hajiahmadi, Amin Abedi, Mojtaba Kordrostami, Cédric Jacquard
Software Mentions: 1
Published: over 5 years ago

10.1002/evl3.241

Adaptive and maladaptive expression plasticity underlying herbicide resistance in an agricultural weed
Cited by: 11
Author(s): Emily B. Josephs, Megan L. Van Etten, Alex Harkess, Adrian E. Platts, Regina S. Baucom
Software Mentions: 1
Published: almost 5 years ago

10.1111/eva.12917

Population genetic structure and predominance of cyclical parthenogenesis in the bird cherry‐oat aphidRhopalosiphum padiin England
Cited by: 11
Author(s): Ramiro Morales‐Hojas, Asier Gonzalez-Uriarte, Fernando Alvira Iraizoz, Todd M. Jenkins, L. J. Alderson, T. Kruger, M. J. Hall, A. F. C. Greenslade, C. R. Shortall, James R. Bell
Software Mentions: 1
Published: over 6 years ago

10.1155/2019/7543049

Determination of Electroacupuncture Effects on circRNAs in Plasma Exosomes in Diabetic Mice: An RNA-Sequencing Approach
Cited by: 5
Author(s): Yin Shou, Li Hu, Weibo Zhang, Yuan Gao, Ping Xu, Bimeng Zhang
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pgen.1006407

Ancient Out-of-Africa Mitochondrial DNA Variants Associate with Distinct Mitochondrial Gene Expression Patterns
Cited by: 32
Author(s): T. Cohen, Liron Levin, Dan Mo
Software Mentions: 1
Published: over 9 years ago

10.1007/s00431-019-03374-z

Rethinking ADHD intervention trials: feasibility testing of two treatments and a methodology
Cited by: 5
Author(s): Philippa Fibert, Tessa Peasgood, Clare Relton
Software Mentions: 1
Published: about 7 years ago

10.3390/plants10091810

Biological and Transcriptomic Characterization of Pre-Haustorial Resistance to Sunflower Broomrape (Orobanche cumana W.) in Sunflowers (Helianthus annuus)
Cited by: 4
Author(s): Dana Sisou, Yaakov Tadmor, Dina Plakhine, Hammam Ziadna, Sariel Hübner, Hanan Eizenberg
Software Mentions: 1
Published: almost 5 years ago

10.1007/s00394-017-1527-7

Antitumor activity and expression profiles of genes induced by sulforaphane in human melanoma cells
Cited by: 30
Author(s): Paola Arcidiacono, Francesco Ragonese, Anna Maria Stabile, Alessandra Pistilli, Ekatherina Sh. Kuligina, Mario Rende, Ugo Bottoni, Stefano Calvieri, Andrea Crisanti, Roberta Spaccapelo
Software Mentions: 1
Published: almost 9 years ago

10.1530/EJE-17-0277

Inflammatory infiltrates in parathyroid tumors
Cited by: 4
Author(s): Felix Haglund, Björn M. Hallström, Inga-Lena Nilsson, Anders Höög, C. Christofer Juhlin, Catharina Larsson
Software Mentions: 1
Published: over 8 years ago

10.3390/epigenomes3010007

An Orphan CpG Island Drives Expression of a let-7 miRNA Precursor with an Important Role in Mouse Development
Cited by: 2
Author(s): Koerner Mv, Kashyap Chhatbar, Shaun Webb, Justyna Cholewa-Waclaw, Jim Selfridge, De Sousa D, Bill Skarnes, Barry Rosen, Mark Thomas, Joanna Bottomley, R Ramires-Solis, Christopher J. Lelliott, David J. Adams, Adrian Bird
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pgen.1007443

Convergent evolution of gene expression in two high-toothed stickleback populations
Cited by: 27
Author(s): James C. Hart, Nicholas Ellis, Michael B. Eisen, Craig T. Miller
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pgen.1006357

Zfp423 Regulates Sonic Hedgehog Signaling via Primary Cilium Function
Cited by: 27
Author(s): Chen-Jei Hong, Bruce A. Hamilton
Software Mentions: 1
Published: over 9 years ago

10.1186/s12302-015-0061-6

Rainfed winter wheat cultivation in the North German Plain will be water limited under climate change until 2070
Cited by: 13
Author(s): Nikolai Svoboda, Maximilian Strer, Johannes Hufnagel
Software Mentions: 1
Published: over 10 years ago

10.1210/endocr/bqaa162

Differential Effects of Voclosporin and Tacrolimus on Insulin Secretion From Human Islets
Cited by: 15
Author(s): Jelena Kolic, Leanne Beet, Peter Overby, Haoning Howard Cen, Evgeniy Panzhinskiy, Daren Ure, Jennifer Cross, Robert B. Huizinga, James D. Johnson
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-018-23749-w

De novo draft assembly of the Botrylloides leachii genome provides further insight into tunicate evolution
Cited by: 34
Author(s): Simon Blanchoud, Kim Rutherford, Lisa Zondag, Neil J. Gemmell, Megan J. Wilson
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-018-21190-7

Characterization of viral RNA splicing using whole-transcriptome datasets from host species
Cited by: 11
Author(s): Chengran Zhou, Shanlin Liu, Wenhui Song, Shiqi Luo, Guanliang Meng, Chentao Yang, Hua Yang, Jinmin Ma, Liang Wang, Shan Gao, Jian Wang, Huanming Yang, Yun Zhao, Hui Wang, Xin Zhou
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-018-24298-y

Accurate identification of RNA editing sites from primitive sequence with deep neural networks
Cited by: 12
Author(s): Zhangyi Ouyang, Feng Liu, Chenghui Zhao, Chao Ren, Gaole An, Chuan Mei, Xiaochen Bo, Wenjie Shu
Software Mentions: 1
Published: about 8 years ago

10.1038/s41598-018-21104-7

Complete Transcriptome Profiling of Normal and Age-Related Macular Degeneration Eye Tissues Reveals Dysregulation of Anti-Sense Transcription
Cited by: 40
Author(s): Young Ho Kim, Gregory R. Grant, Anita S. Bowman, Naqi Haider, Harini V. Gudiseva, Venkata R M Chavali
Software Mentions: 1
Published: over 8 years ago

10.7554/eLife.26464

Loss of adult skeletal muscle stem cells drives age-related neuromuscular junction degeneration
Cited by: 96
Author(s): Wenxuan Liu, Alanna Klose, Sophie Forman, Nicole D. Paris, Lan Wei-LaPierre, Mariela Cortés-López, Aidi Tan, Morgan Flaherty, Pedro Miura, Robert T. Dirksen, Joe V. Chakkalakal
Software Mentions: 1
Published: about 9 years ago

10.1530/ERC-17-0131

Loss-of-function mutations in the CABLES1 gene are a novel cause of Cushing’s disease
Cited by: 61
Author(s): Laura C. Hernández-Ramírez, Ryhem Gam, Nuria Valdés, Maya Lodish, Nathan Pankratz, Aurélio Balsalobre, Yves Gauthier, Fábio R. Faucz, Giampaolo Trivellin, Prashant Chittiboina, John Lane, Denise M. Kay, Aggeliki Dimopoulos, Stéphan Gaillard, Mario Néou, Jérôme Bertherat, Guillaume Assié, Villa Clara, James L. Mills, Jacques Drouin, Constantine A. Stratakis
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-018-19855-4

Biologically active constituents of the secretome of human W8B2+ cardiac stem cells
Cited by: 15
Author(s): Shuai Nie, Xin Wang, Priyadharshini Sivakumaran, Mark M.W. Chong, Xin Liu, Tara Karnezis, Nadeeka Bandara, Kaloyan Takov, Cameron J. Nowell, Stephen Wilcox, Mitch Shambrook, Andrew Hill, Nicole C. Harris, Andrew Newcomb, Pádraig Strappe, Ramin Shayan, Damián Hernández, J. E. M. Clarke, Eric Hanssen, Sean M. Davidson, Gregory J. Dusting, Alice Pébay, Joshua W. K. Ho, Nicholas A. Williamson, Shiang Y. Lim
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-018-19581-x

The microRNA regulatory landscape of MSC-derived exosomes: a systems view
Cited by: 248
Author(s): Scott Ferguson, Jinli Wang, Christine J Lee, Maixian Liu, Sriram Neelamegham, John M. Canty, Juliane Nguyen
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-018-19173-9

NIPBL+/− haploinsufficiency reveals a constellation of transcriptome disruptions in the pluripotent and cardiac states
Cited by: 24
Author(s): Jason A. Mills, Pamela S. Herrera, Maninder Kaur, Lanfranco Leo, Deborah McEldrew, Jesus A Tintos-Hernández, Ramakrishnan Rajagopalan, Alyssa Gagne, Zhe Zhang, Xilma R. Ortiz-González, Ian D. Krantz
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-017-18397-5

Primed primary metabolism in systemic leaves: a functional systems analysis
Cited by: 55
Author(s): Jens Schwachtje, Axel Fischer, Alexander Erban, Joachim Kopka
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-021-88628-3

Arginyltransferase (Ate1) regulates the RGS7 protein level and the sensitivity of light-evoked ON-bipolar responses
Cited by: 5
Author(s): Marie E. Fina, Junling Wang, Sergei Nikonov, Stephanie Sterling, Noga Vardi, Anna Kashina, Dawei Dong
Software Mentions: 1
Published: about 5 years ago

10.1080/22221751.2021.1943537

Naturally circulating pertactin-deficient Bordetella pertussis strains induce distinct gene expression and inflammatory signatures in human dendritic cells
Cited by: 5
Author(s): Michiel Kroes, Alberto Miranda Bedate, Elise S. Hovingh, Ronald Jacobi, Corrie S. Schot, Elder Pupo, René H. M. Raeven, Arno A. J. van der Ark, Jos P. M. van Putten, Jelle de Wit, Rob Mariman, Elena Pinelli
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pcbi.1008486

Breast cancer is marked by specific, Public T-cell receptor CDR3 regions shared by mice and humans
Cited by: 7
Author(s): Miri Gordin, Hagit Philip, Alona Zilberberg, Moriah Gidoni, Raanan Margalit, Christopher R. Clouser, Kristofor Adams, François Vigneault, Irun R. Cohen, Gur Yaari, Sol Efroni
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-021-88671-0

Germinal GLT8D1, GATAD2A and SLC25A39 mutations in a patient with a glomangiopericytal tumor and five different sarcomas over a 10-year period
Cited by: 0
Author(s): Arnaud Beddok, Gaëlle Pérot, Sophie Le Guellec, Noémie Thébault, Alexandre Coutté, Henri Sevestre, Bruno Chauffert, Frédéric Chibon
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-017-17665-8

A Novel Cell Line Based Orthotopic Xenograft Mouse Model That Recapitulates Human Hepatoblastoma
Cited by: 25
Author(s): Sarah E. Woodfield, Yan Shi, Roma H. Patel, Jingling Jin, Angela Major, Stephen F. Sarabia, Zbigniew Starosolski, Barry Zorman, Siddharth Gupta, Zhenghu Chen, Aryana M. Ibarra, Karl Dimiter Bissig, Ketan B. Ghaghada, Pavel Sumazin, Dolores López‐Terrada, Sanjeev A. Vasudevan
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-017-17475-y

The Human Blood-Nerve Barrier Transcriptome
Cited by: 30
Author(s): Steven P. Palladino, E. Scott Helton, Preti Jain, Chaoling Dong, Michael R. Crowley, David K. Crossman, Eroboghene E. Ubogu
Software Mentions: 1
Published: over 8 years ago

10.1038/s41426-018-0039-8

Bordetella pertussis pertactin knock-out strains reveal immunomodulatory properties of this virulence factor
Cited by: 22
Author(s): Elise S. Hovingh, Rob Mariman, Luis Solans, Daniëlle Hijdra, Hendrik Jan Hamstra, Ilse Jongerius, Marjolein van Gent, Frits R. Mooi, Camille Locht, Elena Pinelli
Software Mentions: 1
Published: over 8 years ago

10.1002/ece3.526

Species-time-area and phylogenetic-time-area relationships in tropical tree communities
Cited by: 9
Author(s): Nathan G. Swenson, Xiangcheng Mi, W. John Kress, Jill Thompson, María Uriarte, Jess K. Zimmerman
Software Mentions: 1
Published: over 13 years ago

10.1002/ece3.2798

Quantifying the responses of biological indices to rare macroinvertebrate taxa exclusion: Does excluding more rare taxa cause more error?
Cited by: 3
Author(s): Zhengda Yu, Hui Wang, Meng Jin, Ming Miao, Qiang Kong, Renqing Wang, Jian Liu
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-017-16892-3

Decreased miRNA expression in Klinefelter syndrome
Cited by: 16
Author(s): Laura Cimino, Michele Salemi, Rossella Cannarella, Rosita A. Condorelli, Giorgio Giurato, Giovanna Marchese, Sandro La Vignera, Aldo E. Calogero
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-021-90047-3

From multi-omics integration towards novel genomic interaction networks to identify key cancer cell line characteristics
Cited by: 2
Author(s): T. J. M. Kuijpers, J. C. S. Kleinjans, Danyel Jennen
Software Mentions: 1
Published: about 5 years ago

Projects: cran: STAR

Science Score: 100/100

Bonuses:

Papers Mentioning STAR 5,759