10.1093/bioinformatics/btz033

Improved indel detection in DNA and RNA via realignment with ABRA2
Cited by: 45
Author(s): Lisle E. Mose, Charles M. Perou, Joel S. Parker
Software Mentions: 1
Published: over 7 years ago

10.3390/bioengineering7020062

An Uncertainty Modeling Framework for Intracardiac Electrogram Analysis
Cited by: 1
Author(s): Amirhossein Koneshloo, Dongping Du, Yuncheng Du
Software Mentions: 1
Published: about 6 years ago

10.3762/bjnano.7.198

From iron coordination compounds to metal oxide nanoparticles
Cited by: 13
Author(s): Mihail Iacob, Carmen Racleş, Codrin Tugui, George Stiubianu, Adrian Bele, Liviu Sãcãrescu, Daniel Ţîmpu, Maria Cazacu
Software Mentions: 1
Published: over 9 years ago

10.3390/ijms19082341

Treatment of Periodontal Ligament Stem Cells with MOR and CBD Promotes Cell Survival and Neuronal Differentiation via the PI3K/Akt/mTOR Pathway
Cited by: 26
Author(s): Veronica Lanza Cariccio, Domenico Scionti, Antonio Raffa, Renato Iori, Federica Pollastro, Francesca Diomede, Placido Bramantı, Oriana Trubiani, Emanuela Mazzon
Software Mentions: 1
Published: about 8 years ago

10.1007/s00395-020-00828-6

Functional investigation of the coronary artery disease gene SVEP1
Cited by: 20
Author(s): Michael J. Winkler, Philipp Müller, Amin M. Sharifi, Jana Wobst, Hanna Winter, Michal Mokrý, Lijiang Ma, Sander W. van der Laan, Shichao Pang, Benedikt Miritsch, Julia Hinterdobler, Julia Werner, Barbara Stiller, Ulrich Güldener, Tom R. Webb, Folkert W. Asselbergs, Johan Björkegren, Lars Maegdefessel, Heribert Schunkert, Hendrik B. Sager, Thorsten Kessler
Software Mentions: 1
Published: almost 6 years ago

10.1186/s41927-018-0029-4

Identifying the unmet information and support needs of women with autoimmune rheumatic diseases during pregnancy planning, pregnancy and early parenting: mixed-methods study
Cited by: 29
Author(s): Rhiannon Phillips, Bethan Pell, Aimee Grant, D. Q. Bowen, Julia Sanders, Ann M. Taylor, Adrian Edwards, Ernest Choy, Denitza Williams
Software Mentions: 1
Published: about 8 years ago

10.1186/s13104-017-2985-y

Consideration of non-canonical splice sites improves gene prediction on the Arabidopsis thaliana Niederzenz-1 genome sequence
Cited by: 23
Author(s): Boas Pucker, Daniela Holtgräwe, Bernd Weißhaar
Software Mentions: 1
Published: almost 9 years ago

10.3390/ijms19082162

Molecular Mode of Action of Asteriscus graveolens as an Anticancer Agent
Cited by: 10
Author(s): Zainab Tayeh, Nativ Dudai, Alona Schechter, Vered Chalifa‐Caspi, Simon Barak, Rivka Ofir
Software Mentions: 1
Published: about 8 years ago

10.7554/eLife.66808

Expansion of CD10neg neutrophils and CD14+HLA-DRneg/low monocytes driving proinflammatory responses in patients with acute myocardial infarction
Cited by: 18
Author(s): Daniela Fraccarollo, Jonas Neuser, Julian Möller, Christian Riehle, Paolo Galuppo, Johann Bauersachs
Software Mentions: 1
Published: about 5 years ago

10.1107/S2059798319016577

Amyloid structure determination in <i>RELION</i>-3.1
Cited by: 136
Author(s): S.H.W. Scheres
Software Mentions: 1
Published: over 6 years ago

10.1186/s12889-018-6120-3

The effectiveness and cost-effectiveness of community-based lay distribution of HIV self-tests in increasing uptake of HIV testing among adults in rural Malawi and rural and peri-urban Zambia: protocol for STAR (self-testing for Africa) cluster randomized evaluations
Cited by: 24
Author(s): Melissa Neuman, Pitchaya Indravudh, Richard Chilongosi, Marc d’Elbée, Nicola Desmond, Katherine Fielding, Bernadette Hensen, Cheryl Johnson, Phillip Mkandawire, Alwyn Mwinga, Mutinta Nalubamba, Gertrude Ncube, Lot Nyirenda, Rose Nyrienda, Eveline Otte im Kampe, Miriam Taegtmeyer, Fern Terris‐Prestholt, Helen A. Weiss, Karin Hatzold, Helen Ayles, Elizabeth L. Corbett
Software Mentions: 1
Published: almost 8 years ago

10.1186/s12889-020-08614-8

Mechanisms of change and participant outcomes in a Recovery Education Centre for individuals transitioning from homelessness: a qualitative evaluation
Cited by: 10
Author(s): Nadine Reid, Bushra Khan, Sophie Soklaridis, Nicole Kozloff, Rebecca Brown, Vicky Stergiopoulos
Software Mentions: 1
Published: over 6 years ago

10.1186/s12888-019-2094-7

Recovery-focused mental health care planning and co-ordination in acute inpatient mental health settings: a cross national comparative mixed methods study
Cited by: 42
Author(s): Michael Coffey, Ben Hannigan, Sally Barlow, Martin Cartwright, Rachel Cohen, Alison Faulkner, Aled Jones, Alan Simpson
Software Mentions: 1
Published: over 7 years ago

10.1186/s12888-016-0858-x

Recovery-focused care planning and coordination in England and Wales: a cross-national mixed methods comparative case study
Cited by: 59
Author(s): Alan Simpson, Ben Hannigan, Michael Coffey, Sally Barlow, Rachel Cohen, Aled Jones, Jitka Všetečková, Alison Faulkner, Ashleigh Thornton, Martin Cartwright
Software Mentions: 1
Published: over 10 years ago

10.1186/1471-244X-12-25

Long acting risperidone in Australian patients with chronic schizophrenia: 24-month data from the e-STAR database
Cited by: 13
Author(s): Tim Lambert, B. T. Emmerson, Harry Hustig, Sophie Resseler, An Jacobs, Belinda Butcher
Software Mentions: 1
Published: over 14 years ago

10.1186/1471-244X-8-95

The effect of antipsychotic medication on sexual function and serum prolactin levels in community-treated schizophrenic patients: results from the Schizophrenia Trial of Aripiprazole (STAR) study (NCT00237913)
Cited by: 78
Author(s): Linda Hanssens, Gilbert L’Italien, Jean‐Yves Loze, Ronald N. Marcus, Miranda Pans, Wendy Kerselaers
Software Mentions: 1
Published: almost 18 years ago

10.1186/1471-244X-10-100

Randomised controlled trial of the clinical and cost effectiveness of a specialist team for managing refractory unipolar depressive disorder
Cited by: 18
Author(s): Richard Morriss, Sarah Marttunnen, Anne Garland, Neil Nixon, Ruth McDonald, Tim Sweeney, Heather Flambert, Richard Fox, Catherine Kaylor-Hughes, Marilyn James, Min Yang
Software Mentions: 1
Published: almost 16 years ago

10.3390/ijms19113618

Cytotoxicity and Transcriptomic Analysis of Silver Nanoparticles in Mouse Embryonic Fibroblast Cells
Cited by: 63
Author(s): Sangiliyandi Gurunathan, Muhammad Qasim, Chanhyeok Park, Hyunjin Yoo, Dong Yoon Choi, Hyuk Song, Chankyu Park, Jin‐Hoi Kim, Kwonho Hong
Software Mentions: 1
Published: almost 8 years ago

10.3390/ijms20030750

Development of SNP, KASP, and SSR Markers by BSR-Seq Technology for Saturation of Genetic Linkage Map and Efficient Detection of Wheat Powdery Mildew Resistance Gene Pm61
Cited by: 14
Author(s): Jinghuang Hu, Jingting Li, Peipei Wu, Yahui Li, Dan Qiu, Yunfeng Qu, Jingzhong Xie, Hongjun Zhang, Li Yang, Tiantian Fu, Yan Yu, Mengjuan Li, Hongwei Liu, Tong Zhu, Yang Zhou, Zhiyong Liu, Hongjie Li
Software Mentions: 1
Published: over 7 years ago

10.1186/1471-244X-12-42

Antipsychotic polypharmacy in a regional health service: a population-based study
Cited by: 34
Author(s): Miquel Bernardo, Anna Valeta Coma, Cristina Ibáñez, Corinne Zara, Josep Maria Bari, Antoni Serrano‐Blanco
Software Mentions: 1
Published: over 14 years ago

10.1186/s12919-017-0084-7

Enhancing research careers: an example of a US national diversity-focused, grant-writing training and coaching experiment
Cited by: 25
Author(s): Harlan P. Jones, Richard McGee, Anne Marie Weber-Main, Dedra Buchwald, Spero M. Manson, Jamboor K. Vishwanatha, Kolawole S. Okuyemi
Software Mentions: 1
Published: almost 9 years ago

10.1186/s12870-019-2013-6

Using a transcriptome sequencing approach to explore candidate resistance genes against stemphylium blight in the wild lentil species Lens ervoides
Cited by: 25
Author(s): Zhe Cao, Li Li, Karan Kapoor, Sabine Banniza
Software Mentions: 1
Published: about 7 years ago

10.1186/s12870-019-1969-6

Changes in gene expression and metabolic profile of drupes of Olea europaea L. cv Carolea in relation to maturation stage and cultivation area
Cited by: 19
Author(s): Leonardo Bruno, Ernesto Picardi, Marianna Pacenza, Adriana Chiappetta, Antonella Muto, Olimpia Gagliardi, Innocenzo Muzzalupo, Graziano Pesole, Maria Beatrice Bitonti
Software Mentions: 1
Published: almost 7 years ago

10.1186/s12870-021-03045-y

BRS1 mediates plant redox regulation and cold responses
Cited by: 3
Author(s): Dongzhi Zhang, Yuqian Zhao, Junzhe Wang, Peng Zhao, Shengbao Xu
Software Mentions: 1
Published: over 5 years ago

10.7554/eLife.28652

Host proteostasis modulates influenza evolution
Cited by: 30
Author(s): Angela M Phillips, Luna O Gonzalez, Emmanuel E Nekongo, Anna I. Ponomarenko, Sean M. McHugh, Vincent Butty, Stuart S. Levine, Yu‐Shan Lin, Leonid A. Mirny, Matthew D. Shoulders
Software Mentions: 1
Published: almost 9 years ago

10.7554/eLife.59303

One-shot analysis of translated mammalian lncRNAs with AHARIBO
Cited by: 13
Author(s): L. Minati, Claudia Firrito, Alessia Del Piano, Alberto Peretti, Simone Sidoli, Daniele Peroni, Romina Belli, Francesco Gandolfi, Alessandro Romanel, Paola Bernabò, Jacopo Zasso, Alessandro Quattrone, Graziano Guella, Fabio Lauria, Gabriella Viero, Massimiliano Clamer
Software Mentions: 1
Published: over 5 years ago

10.1186/s12870-019-2185-0

Metatranscriptomic dynamics after Verticillium dahliae infection and root damage in Olea europaea
Cited by: 4
Author(s): Jose Manuel Martí, Luis F. Arias-Giraldo, Wladimiro Dı́az-Villanueva, Vicente Arnau, Antonio Rodríguez-Franco, Carlos P. Garay
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms20051137

CD99 Expression in Glioblastoma Molecular Subtypes and Role in Migration and Invasion
Cited by: 14
Author(s): Laís Cavalca Cardoso, Roseli da Silva Soares, Talita de Sousa Laurentino, Antônio Marcondes Lerário, Suely Kazue Nagahashi Marie, Sueli Mieko Oba-Shinjo
Software Mentions: 1
Published: over 7 years ago

10.1186/1744-859X-13-17

Antidepressant treatment response is modulated by genetic and environmental factors and their interactions
Cited by: 18
Author(s): D Kovács, Xénia Gonda, Péter Petschner, Andrea Edit Édes, Nóra Eszlári, György Bagdy, Gabriella Juhász
Software Mentions: 1
Published: over 12 years ago

10.1186/s12870-019-2191-2

Over-expression of poplar NAC15 gene enhances wood formation in transgenic tobacco
Cited by: 15
Author(s): Wenjing Yao, Dawei Zhang, Boru Zhou, Jianping Wang, Renhua Li, Tingbo Jiang
Software Mentions: 1
Published: over 6 years ago

10.1007/s10439-012-0530-7

Head Impact Exposure in Youth Football
Cited by: 200
Author(s): R.W. Daniel, Steven Rowson, Stefan M. Duma
Software Mentions: 1
Published: over 14 years ago

10.1007/s10439-019-02330-0

Development of the STAR Evaluation System for Assessing Bicycle Helmet Protective Performance
Cited by: 40
Author(s): Megan L. Bland, Craig McNally, David S. Zuby, Becky C. Mueller, Steven Rowson
Software Mentions: 1
Published: about 7 years ago

10.1186/s12870-016-0736-1

Genomic and transcriptomic comparison of nucleotide variations for insights into bruchid resistance of mungbean (Vigna radiata [L.] R. Wilczek)
Cited by: 36
Author(s): Mao-Sen Liu, Tony Kuo, Chih‐Yuan Ko, Dung-Chi Wu, Kuanyi Li, Wu-Jui Lin, Ching-Ping Lin, Yen-Wei Wang, Roland Schafleitner, Hsiao-Feng Lo, Chien‐Yu Chen, Long‐Fang O. Chen
Software Mentions: 1
Published: over 10 years ago

10.3390/ijms20071689

A Transcriptomic Insight into the Impact of Colon Cancer Cells on Mast Cells
Cited by: 10
Author(s): Yingxin Yu, Bart R. Blokhuis, Johan Garssen, Frank A. Redegeld
Software Mentions: 1
Published: over 7 years ago

10.7554/eLife.13374

Metabolic reprogramming during neuronal differentiation from aerobic glycolysis to neuronal oxidative phosphorylation
Cited by: 404
Author(s): Xinde Zheng, Leah Boyer, Mingji Jin, Jérôme Mertens, Yongsung Kim, Li Ma, Michael W. Hamm, Fred H. Gage, Tony Hunter
Software Mentions: 1
Published: over 10 years ago

10.1186/1471-2199-11-48

High-affinity consensus binding of target RNAs by the STAR/GSG proteins GLD-1, STAR-2 and Quaking
Cited by: 12
Author(s): Andrew B. Carmel, Jerry Wu, Katrina A. Lehmann-Blount, James R. Williamson
Software Mentions: 1
Published: over 16 years ago

10.1186/s12874-019-0895-5

Using research networks to generate trustworthy qualitative public health research findings from multiple contexts
Cited by: 14
Author(s): Lot Nyirenda, Meghan Bruce Kumar, Sally Theobald, Malabika Sarker, Musonda Simwinga, Moses Kumwenda, Cheryl Johnson, Karin Hatzold, Elizabeth L. Corbett, Euphemia L Sibanda, Miriam Taegtmeyer
Software Mentions: 1
Published: over 6 years ago

10.1186/s12911-021-01476-z

What matters when exploring fidelity when using health IT to reduce disparities?
Cited by: 3
Author(s): Margaret A. Handley, Jenifer Landeros, Cindie Wu, Adriana Najmabadi, Daniela Vargas, Priyanka Athavale
Software Mentions: 1
Published: over 5 years ago

10.1007/s10439-015-1278-7

Hockey STAR: A Methodology for Assessing the Biomechanical Performance of Hockey Helmets
Cited by: 78
Author(s): Bethany Rowson, Steven Rowson, Stefan M. Duma
Software Mentions: 1
Published: over 11 years ago

10.1186/s40478-021-01238-y

Supratentorial non-RELA, ZFTA-fused ependymomas: a comprehensive phenotype genotype correlation highlighting the number of zinc fingers in ZFTA-NCOA1/2 fusions
Cited by: 16
Author(s): Arnault Tauziède‐Espariat, Aurore Siegfried, Yvan Nicaise, Thomas Kergrohen, Philipp Sievers, Alexandre Vasiljevic, Alexandre Roux, Edouard Dezamis, Chiara Benevello, Marie‐Christine Machet, Sophie Michalak, Chloé Puiseux, Francisco Llamas-Gutierrez, Pierre Leblond, Franck Bourdeaut, Jacques Grill, Christelle Dufour, Léa Guerrini-Rousseau, Samuel Abbou, Volodia Dangouloff-Ros, Nathalie Boddaert, Raphaël Saffroy, Lauren Hasty, Ellen Wahler, Mélanie Pagès, Felipe Andreiuolo, Emmanuèle Lechapt‐Zalcman, Fabrice Chrétien, Thomas Blauwblomme, Kévin Beccaria, Johan Pallud, Stéphanie Puget, Emmanuelle Uro‐Coste, Pascale Varlet
Software Mentions: 1
Published: about 5 years ago

10.7554/eLife.65482

Scaled, high fidelity electrophysiological, morphological, and transcriptomic cell characterization
Cited by: 27
Author(s): Brian R. Lee, Agata Budzillo, Kristen Hadley, Jeremy A. Miller, Tim Jarsky, Katherine Baker, DiJon Hill, Lisa Kim, Rusty Mann, Lindsay Ng, Aaron Oldre, Ram Rajanbabu, Jessica Trinh, Sara Vargas, Thomas Braun, Rachel Dalley, Nathan W. Gouwens, Brian Kalmbach, Tae Kyung Kim, Kimberly A. Smith, Gilberto Soler-Llavina, Staci A. Sorensen, Bosiljka Tasic, Jonathan T. Ting, Ed Lein, Hongkui Zeng, Gabe J. Murphy, Jim Berg
Software Mentions: 1
Published: about 5 years ago

10.1186/s12911-018-0680-0

SwissMTB: establishing comprehensive molecular cancer diagnostics in Swiss clinics
Cited by: 17
Author(s): Franziska Singer, Anja Irmisch, Nora C. Toussaint, Linda Grob, Jochen Singer, Thomas Thurnherr, Niko Beerenwinkel, Mitchell P. Levesque, Reinhard Dummer, Luca Quagliata, Sacha I. Rothschild, Andreas Wicki, Christian Beisel, Daniel J. Stekhoven
Software Mentions: 1
Published: almost 8 years ago

10.1007/s10439-012-0660-y

The Virginia Tech Response
Cited by: 22
Author(s): Steven Rowson, Stefan M. Duma
Software Mentions: 1
Published: almost 14 years ago

10.1186/s12920-021-01041-7

Profiling non-coding RNA levels with clinical classifiers in pediatric Crohn’s disease
Cited by: 6
Author(s): Ranjit S. Pelia, Suresh Venkateswaran, Jonathan Matthews, Yael Haberman, David J. Cutler, Jeffrey S. Hyams, Lee A. Denson, Subra Kugathasan
Software Mentions: 1
Published: about 5 years ago

10.1186/s12920-019-0635-z

Differential alternative splicing regulation among hepatocellular carcinoma with different risk factors
Cited by: 10
Author(s): Young–Joo Jin, Seyoun Byun, Seonggyun Han, J. Edward Chamberlin, Dong-Wook Kim, Min Jung Kim, Younghee Lee
Software Mentions: 1
Published: almost 7 years ago

10.7554/eLife.09207

SPOP mutation leads to genomic instability in prostate cancer
Cited by: 142
Author(s): Gunther Boysen, Christopher E. Barbieri, Davide Prandi, Mirjam Blattner, Sung-Suk Chae, Arun Dahija, Srilakshmi Nataraj, Dennis Huang, Clarisse Marotz, Limei Xu, Julie Huang, Paola Lecca, Sagar Chhangawala, Liu D, Pengbo Zhou, Andrea Sboner, Johann S. de Bono, Francesca Demichelis, Yariv Houvras, Mark A. Rubin
Software Mentions: 1
Published: about 11 years ago

10.1186/s12920-020-00738-5

Fusion transcript detection using spatial transcriptomics
Cited by: 17
Author(s): Stefanie Friedrich, Erik L. L. Sonnhammer
Software Mentions: 1
Published: about 6 years ago

10.1186/s12920-020-00836-4

Differential alternative splicing between hepatocellular carcinoma with normal and elevated serum alpha-fetoprotein
Cited by: 5
Author(s): Young–Joo Jin, Habtamu Minassie Aycheh, Seonggyun Han, J. Edward Chamberlin, Jaehang Shin, Seyoun Byun, Younghee Lee
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12909-021-02805-6

REAPing the benefits: development and use of a structured evaluation framework to codify learning resources for Global Health professionals
Cited by: 1
Author(s): Meike Schleiff, E. Adelaide Hahn, Caroline Dolive, Lillian James, Anant Mishra, Bhakti Hansoti
Software Mentions: 1
Published: about 5 years ago

10.1186/s12865-018-0268-6

Blood handling and leukocyte isolation methods impact the global transcriptome of immune cells
Cited by: 16
Author(s): Brittany A. Goods, Jacqueline Vahey, Arthur F. Steinschneider, Michael H. Askenase, Lauren H Sansing, J. Christopher Love
Software Mentions: 1
Published: almost 8 years ago

10.1007/s10439-019-02345-7

Development and Multi-Scale Validation of a Finite Element Football Helmet Model
Cited by: 24
Author(s): William Decker, Alexander M. Baker, Xin Ye, Philip J. Brown, Joel D. Stitzel, F. Scott Gayzik
Software Mentions: 1
Published: about 7 years ago

10.1186/s12913-016-1734-6

A pilot study among older adults of the concordance between their self-reports to a health survey and spousal proxy reports on their behalf
Cited by: 12
Author(s): Fredric D. Wolinsky, Lioness Ayres, Michael P. Jones, Yiyue Lou, George L. Wehby, Fred Ullrich
Software Mentions: 1
Published: about 10 years ago

10.1186/s12913-019-4881-8

Experience gained from the implementation of the Saudi TraumA Registry (STAR)
Cited by: 5
Author(s): Jane E. Ford, Abdulrahman Alqahtani, Shatha A. A. Abuzinada, Peter Cameron, Mark Fitzgerald, Ahmed Alenizi, Dina Farjou
Software Mentions: 1
Published: over 6 years ago

10.1007/s10439-020-02703-w

Ranking and Rating Bicycle Helmet Safety Performance in Oblique Impacts Using Eight Different Brain Injury Models
Cited by: 58
Author(s): Madelen Fahlstedt, Fady F. Abayazid, Matthew B. Panzer, Antonia Trotta, Wei Zhao, Mazdak Ghajari, Michael D. Gilchrist, Songbai Ji, Svein Kleiven, Xiaogai Li, Aisling Ní Annaidh, Peter Halldin
Software Mentions: 1
Published: over 5 years ago

10.7554/eLife.47702

The alternative regenerative strategy of bearded dragon unveils the key processes underlying vertebrate tooth renewal
Cited by: 22
Author(s): Lotta Salomies, Julia Eymann, Imran Khan, Nicolas Di-Poı̈
Software Mentions: 1
Published: about 7 years ago

10.7554/eLife.47098

Evidence for DNA-mediated nuclear compartmentalization distinct from phase separation
Cited by: 204
Author(s): David McSwiggen, Anders S. Hansen, Sheila S Teves, Hervé Marie-Nelly, Yvonne Hao, Alec Heckert, Dinesh Vyas, Claire Dugast-Darzacq, Robert Tjian, Xavier Darzacq
Software Mentions: 1
Published: over 7 years ago

10.1186/s12913-021-06521-1

Protocol for a two-arm pragmatic stepped-wedge hybrid effectiveness-implementation trial evaluating Engagement and Collaborative Management to Proactively Advance Sepsis Survivorship (ENCOMPASS)
Cited by: 3
Author(s): Marc Kowalkowski, Tara Eaton, Andrew McWilliams, Hazel Tapp, Aleta Rios, Stephanie Murphy, Ryan Burns, Bella Gutnik, Katherine O’Hare, Lewis McCurdy, Michael Dulin, Christopher M. Blanchette, Shih-Hsiung Chou, Scott D. Halpern, Derek C. Angus, Stephanie Parks Taylor
Software Mentions: 1
Published: over 5 years ago

10.3390/nu10121829

Nobiletin Enhances Chemosensitivity to Adriamycin through Modulation of the Akt/GSK3β/β–Catenin/MYCN/MRP1 Signaling Pathway in A549 Human Non-Small-Cell Lung Cancer Cells
Cited by: 30
Author(s): Jeong Yong Moon, Le Van Hung, Tatsuya Unno, Somi Kim Cho
Software Mentions: 1
Published: almost 8 years ago

10.1186/s13073-019-0635-9

TCF21 and AP-1 interact through epigenetic modifications to regulate coronary artery disease gene expression
Cited by: 41
Author(s): Quanyi Zhao, Robert Wirka, Trieu Nguyen, Manabu Nagao, Paul Cheng, Clint L. Miller, Juyong Brian Kim, Milos Pjanic, Thomas Quertermous
Software Mentions: 1
Published: over 7 years ago

10.1186/s13073-018-0567-9

Single-cell transcriptome analysis of lineage diversity in high-grade glioma
Cited by: 157
Author(s): Jinzhou Yuan, Hanna Mendes Levitin, Véronique Frattini, Erin C. Bush, Deborah Boyett, Jorge Samanamud, Michele Ceccarelli, Athanassios Dovas, George Zanazzi, Peter Canoll, Jeffrey N. Bruce, Anna Lasorella, Antonio Iavarone, Peter A. Sims
Software Mentions: 1
Published: about 8 years ago

10.1186/s13073-015-0152-4

Calling genotypes from public RNA-sequencing data enables identification of genetic variants that affect gene-expression levels
Cited by: 71
Author(s): Patrick Deelen, Daria V. Zhernakova, Mark de Haan, Marijke van der Sijde, Marc Jan Bonder, Juha Karjalainen, K. Joeri van der Velde, Kristin M. Abbott, Jingyuan Fu, Cisca Wijmenga, Richard J. Sinke, Morris A. Swertz, Lude Franke
Software Mentions: 1
Published: over 11 years ago

10.1093/gbe/evab178

The Genome of the Haptophyte <i>Diacronema lutheri</i> (<i>Pavlova lutheri</i>, Pavlovales): A Model for Lipid Biosynthesis in Eukaryotic Algae
Cited by: 5
Author(s): Chris J. Hulatt, René H. Wijffels, Matthew C. Posewitz
Software Mentions: 1
Published: about 5 years ago

10.1186/s13073-020-00746-1

The rate and spectrum of mosaic mutations during embryogenesis revealed by RNA sequencing of 49 tissues
Cited by: 21
Author(s): Francesc Muyas, Luís Zapata, Roderic Guigó, Stephan Ossowski
Software Mentions: 1
Published: over 6 years ago

10.1093/gbe/evaa235

A New Dinoflagellate Genome Illuminates a Conserved Gene Cluster Involved in Sunscreen Biosynthesis
Cited by: 27
Author(s): Eiichi Shoguchi, Girish Beedessee, Kanako Hisata, Isao Tada, Haruhi Narisoko, Noriyuki Satoh, Masanobu Kawachi, Chuya Shinzato
Software Mentions: 1
Published: almost 6 years ago

10.1093/gbe/evaa195

Comprehensive Transcriptome of the Maize Stalk Borer,<i>Busseola fusca</i>, from Multiple Tissue Types, Developmental Stages, and Parasitoid Wasp Exposures
Cited by: 1
Author(s):
Software Mentions: 1
Published: about 6 years ago

10.1093/gbe/evz176

Multilayered Tuning of Dosage Compensation and Z-Chromosome Masculinization in the Wood White (Leptidea sinapis) Butterfly
Cited by: 4
Author(s): Lars Höök, Luis Leal, Venkat Talla, Niclas Backström
Software Mentions: 1
Published: about 7 years ago

10.3390/ani10061035

Analysis of lncRNAs Expression Profiles in Hair Follicle of Hu Sheep Lambskin
Cited by: 16
Author(s): Xiaoyang Lv, Wei-Hao Chen, Wei Sun, Zahid Hussain, Shanhe Wang, Jinyu Wang
Software Mentions: 1
Published: over 6 years ago

10.1093/gbe/evz141

The Genome Sequence of the Anthelmintic-Susceptible New Zealand Haemonchus contortus
Cited by: 25
Author(s): Nikola Palevich, Paul Maclean, Abdul Baten, Richard W. Scott, David M Leathwick
Software Mentions: 1
Published: about 7 years ago

10.3390/ijms20184387

Differential Regulation of Anthocyanins in Green and Purple Turnips Revealed by Combined De Novo Transcriptome and Metabolome Analysis
Cited by: 62
Author(s): Hongmei Zhuang, Qian Lei, Huifang Liu, Hongwei Han, Qiang Wang, Zhonghua Tang, Yanming Ma, Hao Wang
Software Mentions: 1
Published: about 7 years ago

10.1186/s13059-021-02434-8

Specific splice junction detection in single cells with SICILIAN
Cited by: 12
Author(s): Roozbeh Dehghannasiri, Julia Eve Olivieri, Ana Damljanovic, Julia Salzman
Software Mentions: 1
Published: about 5 years ago

10.1186/s13059-021-02399-8

LIQA: long-read isoform quantification and analysis
Cited by: 37
Author(s): Yu Hu, Fang Li, Xuelian Chen, Jiang Zhong, Mingyao Li, Kai Wang
Software Mentions: 1
Published: over 5 years ago

10.1186/s13059-021-02350-x

Intergenic RNA mainly derives from nascent transcripts of known genes
Cited by: 13
Author(s): Antonella Federico, Julian A. Zagalak, Jan Attig, Jernej Ule, Nicholas M. Luscombe
Software Mentions: 1
Published: over 5 years ago

10.1186/s13059-020-02180-3

Massive gene presence-absence variation shapes an open pan-genome in the Mediterranean mussel
Cited by: 89
Author(s): Marco Gerdol, Rebeca Moreira, Fernando Cruz, Jèssica Gómez‐Garrido, Anna Vlasova, Umberto Rosani, Paola Venier, Miguel A. Naranjo‐Ortiz, Maria Murgarella, Samuele Greco, Pablo Balseiro, André Corvelo, Leonor Frías, Marta Gut, Toni Gabaldón, Alberto Pallavicini, Carlos Canchaya, Beatriz Novoa, Tyler Alioto, David Posada, António Figueras
Software Mentions: 1
Published: almost 6 years ago

10.1186/s13059-020-02094-0

Single-cell RNA-seq analysis reveals ploidy-dependent and cell-specific transcriptome changes in Arabidopsis female gametophytes
Cited by: 52
Author(s): Qingxin Song, Atsumi Ando, Ning Jiang, Yoko Ikeda, Z Jeffrey Chen
Software Mentions: 1
Published: about 6 years ago

10.3389/fpubh.2021.653543

Challenges of HIV Self-Test Distribution for Index Testing When HIV Status Disclosure Is Low: Preliminary Results of a Qualitative Study in Bamako (Mali) as Part of the ATLAS Project
Cited by: 7
Author(s): Sokhna Boye, Seydou Bouaré, Odette Ky-Zerbo, Nicolas Rouveau, Arlette Simo Fotso, Marc d’Elbée, Romain Silhol, Mathieu Maheu‐Giroux, Anthony Vautier, G. Breton, Abdelaye Keita, Anne Bekelynck, Alice Desclaux, Joseph Larmarange, Dolorès Pourette
Software Mentions: 1
Published: over 5 years ago

10.3390/ani11092706

Ad Libitum Feeding in Broiler Breeder Hens Alters the Transcriptome of Granulosa Cells of Pre-Hierarchal Follicles
Cited by: 4
Author(s): Laurie Francoeur, Claire Stephens, Patricia A. Johnson
Software Mentions: 1
Published: about 5 years ago

10.3389/fpubh.2021.593453

Sustainable Behavior Change for Health Supported by Person-Tailored, Adaptive, Risk-Aware Digital Coaching in a Social Context: Study Protocol for the STAR-C Research Programme
Cited by: 3
Author(s): Nawi Ng, Malin Eriksson, Esteban Guerrero, Carina Gustafsson, John Kinsman, Jens Lindberg, Helena Lindgren, Kristina Lindvall, Anna Sofia Lundgren, Göran Lönnberg, Klas-Göran Sahlén, Ailiana Santosa, Linda Richter Sundberg, Lars Weinehall, Patrik Wennberg
Software Mentions: 1
Published: over 5 years ago

10.3389/fpsyg.2019.02026

Auditory Stimulation Training With Technically Manipulated Musical Material in Preschool Children With Specific Language Impairments: An Explorative Study
Cited by: 7
Author(s): Ingo Roden, Kaija Früchtenicht, Gunter Kreutz, Friedrich Linderkamp, Dietmar Grube
Software Mentions: 1
Published: about 7 years ago

10.3389/fpsyg.2021.629231

Assessment Methods for Service-Learning Projects in Engineering in Higher Education: A Systematic Review
Cited by: 7
Author(s): Marián Queiruga-Dios, María Jesús Santos Sánchez, Miguel Ángel Queiruga Dios, Pedro Mauricio Acosta Castellanos, Araceli Queiruga Dios
Software Mentions: 1
Published: about 5 years ago

10.5808/GI.2019.17.1.e3

Identification of ERBB Pathway-Activated Cells in Triple-Negative Breast Cancer
Cited by: 8
Author(s): Soo Young Cho
Software Mentions: 1
Published: over 7 years ago

10.3389/fpsyg.2015.00064

Children with speech sound disorder: comparing a non-linguistic auditory approach with a phonological intervention approach to improve phonological skills
Cited by: 6
Author(s): Cristina Ferraz Borges Murphy, Luciana O. Pagan-Neves, Haydée F. Wertzner, Eliane Schochat
Software Mentions: 1
Published: over 11 years ago

10.5808/GI.2019.17.3.e32

Comparison of the MGISEQ-2000 and Illumina HiSeq 4000 sequencing platforms for RNA sequencing
Cited by: 29
Author(s): Sol A Jeon, Jong‐Lyul Park, Jong-Hwan Kim, Jeong Hwan Kim, Yong‐Sung Kim, Jin Cheon Kim, Seon‐Young Kim
Software Mentions: 1
Published: almost 7 years ago

10.3389/fpsyt.2020.00779

Engaging Adults Experiencing Homelessness in Recovery Education: A Qualitative Analysis of Individual and Program Level Enabling Factors
Cited by: 5
Author(s): Bushra Khan, Nadine Reid, Rebecca Brown, Nicole Kozloff, Vicky Stergiopoulos
Software Mentions: 1
Published: about 6 years ago

10.5808/GI.2020.18.1.e10

Accelerating next generation sequencing data analysis: an evaluation of optimized best practices for Genome Analysis Toolkit algorithms
Cited by: 29
Author(s): Karl R. Franke, Erin L. Crowgey
Software Mentions: 1
Published: over 6 years ago

10.1016/j.gpb.2016.02.003

Profiling and Validation of the Circular RNA Repertoire in Adult Murine Hearts
Cited by: 74
Author(s): Tobias Jakobi, Lisa F. Czaja-Hasse, Richard Reinhardt, Christoph Dieterich
Software Mentions: 1
Published: about 10 years ago

10.7554/eLife.59166

Metabolic but not transcriptional regulation by PKM2 is important for natural killer cell responses
Cited by: 17
Author(s): Jessica Walls, Jeffrey Subleski, Erika M. Palmieri, Marieli Gonzalez-Cotto, Clair M. Gardiner, Daniel W. McVicar, David K. Finlay
Software Mentions: 1
Published: about 6 years ago

10.1016/j.gpb.2020.10.005

Chinese Glioma Genome Atlas (CGGA): A Comprehensive Resource with Functional Genomic Data from Chinese Glioma Patients
Cited by: 384
Author(s): Zheng Zhao, Kenan Zhang, Qiangwei Wang, Guanzhang Li, Fan Zeng, Ying Zhang, Fan Wu, Rui‐Chao Chai, Zheng Wang, Chuanbao Zhang, Wei Zhang, Zhaoshi Bao, Tao Jiang
Software Mentions: 1
Published: over 5 years ago

10.1186/s13742-015-0105-2

Colib’read on galaxy: a tools suite dedicated to biological information extraction from raw NGS reads
Cited by: 2
Author(s): Yvan Le Bras, Olivier Collin, Cyril Monjeaud, Vincent Lacroix, Éric Rivals, Claire Lemaitre, Vincent Miele, Gustavo Sacomoto, Camille Marchet, Bastien Cazaux, Amal Zine El Aabidine, Leena Salmela, Susete Alves‐Carvalho, Alexan Andrieux, Raluca Uricaru, Pierre Peterlongo
Software Mentions: 1
Published: over 10 years ago

10.3389/fpsyt.2020.00276

Functional Neuroimaging in Psychiatry—Aiding in Diagnosis and Guiding Treatment. What the American Psychiatric Association Does Not Know
Cited by: 28
Author(s): Theodore A. Henderson, Muriel J. van Lierop, Mary Kay McLean, J.M. Uszler, John F. Thornton, Yin-Hui Siow, Dan G. Pavel, Joe Cardaci, Philip Cohen
Software Mentions: 1
Published: over 6 years ago

10.1093/gigascience/gix012

RED-ML: a novel, effective RNA editing detection method based on machine learning
Cited by: 27
Author(s): Heng Xiong, Dongbing Liu, Qiye Li, Mengyue Lei, Liqin Xu, Liang Wu, Zongji Wang, Shancheng Ren, Wangsheng Li, Min Xia, Lihua Lü, Haorong Lu, Yong Hou, Shida Zhu, Xin Liu, Ying Sun, Jian Wang, Huanming Yang, Kui Wu, Xun Xu, Leo J. Lee
Software Mentions: 1
Published: over 9 years ago

10.1093/gigascience/gix035

A high-coverage draft genome of the mycalesine butterfly Bicyclus anynana
Cited by: 45
Author(s): Reuben W. Nowell, Benjamin Elsworth, Vicencio Oostra, Bas J. Zwaan, Christopher W. Wheat, Marjo Saastamoinen, Ilik J. Saccheri, Arjen E Van’t Hof, Bethany R. Wasik, Heidi Connahs, Muhammad Aslam, Sujai Kumar, Richard Challis, Antónia Monteiro, Paul M. Brakefield, Mark Blaxter
Software Mentions: 1
Published: over 9 years ago

10.1093/gigascience/gix122

VaDiR: an integrated approach to Variant Detection in RNA
Cited by: 14
Author(s): Lisa Neums, Seiji Suenaga, Peter Beyerlein, Sara Anders, Devin C. Koestler, Andrea Mariani, Jeremy Chien
Software Mentions: 1
Published: almost 9 years ago

10.1093/gigascience/giy008

Draft genome assembly of the Bengalese finch, Lonchura striata domestica, a model for motor skill variability and learning
Cited by: 12
Author(s): Bradley M. Colquitt, David G. Mets, Michael S. Brainard
Software Mentions: 1
Published: over 8 years ago

10.1093/gigascience/giy010

The genome sequence and transcriptome of Potentilla micrantha and their comparison to Fragaria vesca (the woodland strawberry)
Cited by: 37
Author(s): Matteo Buti, Marco Moretto, Elena Barghini, Flavia Mascagni, Lucia Natali, Matteo Brilli, Alexandre Lomsadze, Paolo Sonego, L. Giongo, Michael Alonge, Riccardo Velasco, Claudio Varotto, Nada Šurbanovski, Mark Borodovsky, J. A. Ward, Kristof Engelen, Andrea Cavallini, Alessandro Cestaro, Daniel J. Sargent
Software Mentions: 1
Published: over 9 years ago

10.3389/fpsyt.2020.565896

Contextualized School-Based Cognitive Behavioral Therapy (CBT) Intervention for Malaysian Secondary School Students
Cited by: 0
Author(s): Jo Anne Saw, Cai Lian Tam, Vanlal Thanzami, Gregory Bonn
Software Mentions: 1
Published: over 5 years ago

10.1093/gigascience/gix081

Transcriptional mapping of the primary somatosensory cortex upon sensory deprivation
Cited by: 8
Author(s): Koen Kole, Yutaro Komuro, Jan Provazník, Jelena Pistolic, Vladimı́r Beneš, Paul Tiesinga, Tansu Celikel
Software Mentions: 1
Published: about 9 years ago

10.3389/fpsyt.2018.00597

Evaluation of the Association Between Genetic Variants in Circadian Rhythm Genes and Posttraumatic Stress Symptoms Identifies a Potential Functional Allele in the Transcription Factor TEF
Cited by: 8
Author(s): Sarah D. Linnstaedt, Yue Pan, Matthew C. Mauck, Jenyth Sullivan, Christine Zhou, Lindsey Jung, Cathleen A. Rueckeis, Jameson D Blount, Matthew S Carson, Andrew S. Tungate, Michael C. Kurz, Phyllis L. Hendry, Christopher Lewandowski, Teresa D׳Anza, Elizabeth M. Datner, Kathy Bell, Megan Lechner, Jeffrey W. Shupp, Bruce A. Cairns, Samuel A. McLean
Software Mentions: 1
Published: almost 8 years ago

10.3389/fpsyt.2019.00575

Psychometric Properties of Scale to Assess the Therapeutic Relationship—JapaneseVersion (STAR-J)
Cited by: 5
Author(s): Asami Matsunaga, Sosei Yamaguchi, Utako Sawada, Takuma Shiozawa, Chiyo Fujii
Software Mentions: 1
Published: about 7 years ago

10.3389/fpsyt.2019.00690

The Three Ps: Psychiatry, Pharmacy, and Pharmacogenomics, a Brief Report From New Zealand
Cited by: 11
Author(s): Simran Maggo, Kyra L.V. Sycamore, Allison L. Miller, Martin A. Kennedy
Software Mentions: 1
Published: almost 7 years ago

10.1186/s12864-018-4456-9

Ouroboros resembling competitive endogenous loop (ORCEL) in circular RNAs revealed through transcriptome sequencing dataset analysis
Cited by: 4
Author(s): Yu-Chen Liu, Hsiao Chin Hong, Chi Yang, Wei Hsiang Lee, Hsin Tzu Huang, Hsien-Da Huang
Software Mentions: 1
Published: over 8 years ago