Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: STAR

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/STAR

Spike Train Analysis with R
6 versions
Latest release: about 12 years ago
3 dependent packages
0 downloads

Papers Mentioning STAR 5,759

10.1200/PO.18.00105
Personalized Clinical Decision Making Through Implementation of a Molecular Tumor Board: A German Single-Center Experience
Cited by: 30
Author(s): Rouven Hoefflin, Anna-Lena Geißler, Ralph Fritsch, Rainer Claus, Julius Wehrle, Patrick Bastos Metzger, Meike Reiser, Leman Mehmed, Lisa Fauth, Dieter Henrik Heiland, Thalia Erbes, Friedrich Stock, Ágnes Csanádi, Cornelius Miething, Britta Weddeling, Frank Meiß, Dagmar von Bubnoff, Christine Dierks, Isabell Ge, Volker Brass, Steffen Heeg, Henning Schäfer, Martin Boeker, Justyna Rawluk, Elke Botzenhart, Gian Kayser, Simone Hettmer, Hauke Busch, Christoph Peters, Martin Werner, Justus Duyster, Tilman Brummer, Melanie Boerries, Silke Laßmann, Nikolas von Bubnoff
Software Mentions: 1
Published: about 6 years ago
10.1002/cam4.42
Proceedings of the I ndo‐ U.S. bilateral workshop on accelerating botanicals/biologics agent development research for cancer chemoprevention, treatment, and survival
Cited by: 2
Author(s): Nagi B. Kumar, Medha Dhurandhar, Bharat B. Aggarwal, Shrikant Anant, Kenyon G. Daniel, Gary Deng, Julie Y. Djeu, Jinhui Dou, Ernest T. Hawk, B. Jayaram, Jia Lee, Rajendra Joshi, Madhuri Kararala, Devarajan Karunagaran, Ömer Küçük, Lalit Kumar, Mokenge P. Malafa, G. J. Samathanam, Fazlul H. Sarkar, Maqsood Siddiqi, Rana P. Singh, A. K. Srivastava, Jeffrey D. White
Software Mentions: 1
Published: almost 12 years ago
10.1186/s13058-020-01361-z
CRIPTO antagonist ALK4L75A-Fc inhibits breast cancer cell plasticity and adaptation to stress
Cited by: 4
Author(s): Ozlen Balcioglu, Richard E. Heinz, D.W. Freeman, Brooke L. Gates, Berhane M. Hagos, Evan Booker, Elnaz Mirzaei Mehrabad, Hyrum T Diesen, Kishan Bhakta, Supraja Ranganathan, Masami Kachi, Mathias Leblanc, Peter C. Gray, Benjamin T. Spike
Software Mentions: 1
Published: about 4 years ago
10.1200/PO.18.00297
Crizotinib and Surgery for Long-Term Disease Control in Children and Adolescents With ALK-Positive Inflammatory Myofibroblastic Tumors
Cited by: 21
Author(s): Toby N. Trahair, Andrew J. Gifford, Ashleigh M. Fordham, Chelsea Mayoh, Mitali Fadia, Robyn Lukeis, Andrew C. Wood, Santosh Valvi, Rodney A. Walker, James Blackburn, Erin E. Heyer, Tim R. Mercer, Draga Barbaric, Glenn M. Marshall, Karen L. MacKenzie
Software Mentions: 1
Published: almost 5 years ago
10.1371/journal.ppat.1006846
A new cell culture model to genetically dissect the complete human papillomavirus life cycle
Cited by: 40
Author(s): Malgorzata Bienkowska-Haba, Wioleta Łuszczek, Julia E. Myers, Timothy R. Keiffer, Stephen DiGiuseppe, Paula Polk, Jason M. Bodily, Rona S. Scott, Martin Sapp
Software Mentions: 1
Published: over 6 years ago
10.1186/s13058-020-01300-y
New generation breast cancer cell lines developed from patient-derived xenografts
Cited by: 25
Author(s): Jessica Finlay-Schultz, Britta M. Jacobsen, Duncan Riley, Kiran Paul, Scott A. Turner, Andrea Ferreira‐Gonzalez, J. Chuck Harrell, Peter Kabos, Carol A. Sartorius
Software Mentions: 1
Published: over 4 years ago
10.1111/bjd.16573
Inherited pulmonary cylindromas: extending the phenotype of <i>CYLD</i> mutation carriers
Cited by: 8
Author(s): Sarah Madeline Brown, M. Arefi, Robert Stones, PS Loo, Sion Barnard, C. A. Bloxham, Niki Stefanos, J.A.A. Langtry, S. A. Worthy, Eduardo Calonje, Akhtar Husain, Neil Rajan
Software Mentions: 1
Published: over 6 years ago
10.1172/jci.insight.148147
Type II alveolar epithelial cell–specific loss of RhoA exacerbates allergic airway inflammation through SLC26A4
Cited by: 4
Author(s): C. Danh, Yan Zhang, Wei Tu, Xinyue Hu, Xiaojun Xiao, Jingsi Chen, Haiping Hao, Zhigang Liu, Jing Li, Shau Ku Huang, Mei Wan, Peisong Gao
Software Mentions: 1
Published: over 3 years ago
10.1172/jci.insight.146314
TNF blockade uncouples toxicity from antitumor efficacy induced with CD40 chemoimmunotherapy
Cited by: 5
Author(s): Maureen Stone, Vivian Lee, Veronica M. Herrera, Kathleen Graham, Jae Woo Lee, Austin P. Huffman, Heather Coho, Evan Tooker, Max I. Myers, Michael A. Giannone, Yan Li, Thomas H. Buckingham, Kristen B. Long, Gregory L. Beatty
Software Mentions: 1
Published: over 3 years ago
10.1002/jia2.25256
To thine own test be true: HIV self‐testing and the global reach for the undiagnosed
Cited by: 25
Author(s): Vincent Wong, Erin Jenkins, Nathan Ford, Heather Ingold
Software Mentions: 1
Published: over 5 years ago
10.1172/jci.insight.146572
The role of Sp140 revealed in IgE and mast cell responses in Collaborative Cross mice
Cited by: 8
Author(s): Kazunobu Matsushita, Xin Li, Yuki Nakamura, Danyue Dong, Kaori Mukai, Mindy Tsai, S Montgomery, Stephen J. Galli
Software Mentions: 1
Published: over 3 years ago
10.1002/jia2.25238
Challenges in measurement of linkage following <scp>HIV</scp> self‐testing: examples from the <scp>STAR</scp> Project
Cited by: 19
Author(s): Melissa Neuman, Miriam Taegtmeyer, Karin Hatzold, Cheryl Johnson, Helen A. Weiss, Katherine Fielding
Software Mentions: 1
Published: over 5 years ago
10.1172/jci.insight.149033
Gut germinal center regeneration and enhanced antiviral immunity by mesenchymal stem/stromal cells in SIV infection
Cited by: 7
Author(s): Mariana G. Weber, C. J. Walters, Amir Kol, Clarissa Santos Rocha, Lauren A. Hirao, Abigail L Mende, Bipin Balan, Juan Arredondo, Sonny R. Elizaldi, Smita S. Iyer, Alice F. Tarantal, Satya Dandekar
Software Mentions: 1
Published: over 3 years ago
10.1002/jia2.25091
Multiple strategies to identify HIV-positive black men who have sex with men and transgender women in New York City: a cross-sectional analysis of recruitment results
Cited by: 10
Author(s): Julie Franks, Sharon Mannheimer, Yael Hirsch‐Moverman, Eleanor Hayes‐Larson, Paul W. Colson, Hugo Ortega, Wafaa El‐Sadr
Software Mentions: 1
Published: over 6 years ago
10.1172/jci.insight.140627
LncRNA VINAS regulates atherosclerosis by modulating NF-κB and MAPK signaling
Cited by: 46
Author(s): Viorel Simion, Hong-Hao Zhou, Jacob B. Pierce, Dafeng Yang, Stefan Haemmig, Yevgenia Tesmenitsky, Galina K. Sukhova, Peter H. Stone, Peter Libby, Mark W. Feinberg
Software Mentions: 1
Published: about 4 years ago
10.1371/journal.ppat.1007850
The protective effect of inflammatory monocytes during systemic C. albicans infection is dependent on collaboration between C-type lectin-like receptors
Cited by: 33
Author(s): Aiysha Thompson, Luke C. Davies, Chia‐Te Liao, Diogo M da Fonseca, J. S. Griffiths, Robert Andrews, Aled Jones, Mathew Clement, Gordon D. Brown, Ian R. Humphreys, Philip Russel Taylor, Selinda J. Orr
Software Mentions: 1
Published: over 5 years ago
10.1172/jci.insight.142560
Tumor genotype, location, and malignant potential shape the immunogenicity of primary untreated gastrointestinal stromal tumors
Cited by: 10
Author(s): Daniela Gasparotto, Marta Sbaraglia, Sabrina Rossi, Davide Baldazzi, Monica Brenca, Alessia Mondello, Federica Nardi, Dominga Racanelli, Matilde Cacciatore, Angelo Paolo Dei Tos, Roberta Maestro
Software Mentions: 1
Published: about 4 years ago
10.1172/jci.insight.141217
Liver epithelial focal adhesion kinase modulates fibrogenesis and hedgehog signaling
Cited by: 9
Author(s): Yun Weng, Tyler J Lieberthal, Vivian X. Zhou, Maya Lopez-Ichikawa, Manuel Armas-Phan, Tristan K Bond, Miya Yoshida, Won‐Tak Choi, Tzu-Ming Chang
Software Mentions: 1
Published: about 4 years ago
10.1002/jia2.25251
Exploring social harms during distribution of HIV self‐testing kits using mixed‐methods approaches in Malawi
Cited by: 47
Author(s): Moses Kumwenda, Cheryl Johnson, Augustine Choko, Wezzie Lora, Wakumanya Sibande, Doreen Sakala, Pitchaya Indravudh, Richard Chilongosi, R Baggaley, Rose Nyirenda, Miriam Taegtmeyer, Karin Hatzold, Nicola Desmond, Elizabeth L. Corbett
Software Mentions: 1
Published: over 5 years ago
10.3390/ijms11103906
Preparation of an Adhesive in Emulsion for Maxillofacial Prosthetic
Cited by: 2
Author(s): Judith A. Sánchez-García, Alejandra Ortega, Federico Barceló-Santana, Joaquín Palacios‐Alquisira
Software Mentions: 1
Published: about 14 years ago
10.1002/jbm4.10071
MicroRNA‐138 Inhibits Osteogenic Differentiation and Mineralization of Human Dedifferentiated Chondrocytes by Regulating RhoC and the Actin Cytoskeleton
Cited by: 17
Author(s): Hongjun Zhang, David Ramnaraign, Britta A. Anderson, Eric Tycksen, Ryan M. Nunley, Audrey McAlinden
Software Mentions: 1
Published: over 6 years ago
10.3390/insects10120442
Characterization of Dendrolimus houi Lajonquiere (Lepidoptera: Lasiocampidae) Transcriptome across All Life Stages
Cited by: 7
Author(s): Xuelei Han, Ciding Lu, Scott M. Geib, Jia Wei Zheng, Songqing Wu, Feiping Zhang, Guangwen Liang
Software Mentions: 1
Published: almost 5 years ago
10.1186/s13027-019-0253-6
A meta-analysis on genetic variability of RT/HBsAg overlapping region of hepatitis B virus (HBV) isolates of Bangladesh
Cited by: 13
Author(s): Md. Golzar Hossain, Keiji Ueda
Software Mentions: 1
Published: about 5 years ago
10.1016/j.immuni.2019.01.004
Survival of Single Positive Thymocytes Depends upon Developmental Control of RIPK1 Kinase Signaling by the IKK Complex Independent of NF-κB
Cited by: 23
Author(s): Louise V. Webb, Alessandro Barbarulo, Jelle Huysentruyt, Tom Vanden Berghe, Nozomi Takahashi, Steven C. Ley, Peter Vandenabeele, Benedict Seddon
Software Mentions: 1
Published: almost 6 years ago
10.1186/s12979-020-00198-6
ARID3a expression in human hematopoietic stem cells is associated with distinct gene patterns in aged individuals
Cited by: 6
Author(s): Michelle Ratliff, Joshua W. Garton, Judith A. James, Carol F. Webb
Software Mentions: 1
Published: about 4 years ago
10.1038/s41413-020-0094-3
uPAR antibody (huATN-658) and Zometa reduce breast cancer growth and skeletal lesions
Cited by: 21
Author(s): Niaz Mahmood, Ani Arakelian, Haseeb Ahmed Khan, Imrana Tanvir, Andrew P. Mazar, Shafaat A. Rabbani
Software Mentions: 1
Published: over 4 years ago
10.1186/s43008-019-0013-7
IMA Genome-F 11
Cited by: 11
Author(s): Brenda D. Wingfield, Arista Fourie, M.C. Simpson, Vuyiswa Bushula-Njah, Janneke Aylward, Irene Barnes, Martin Petrus Albertus Coetzee, L.L. Dreyer, Tuan A. Duong, David M. Geiser, Francois Roets, Emma Theodora Steenkamp, Magriet A. van der Nest, Carel van Heerden
Software Mentions: 1
Published: about 5 years ago
10.1038/s41438-020-0301-9
Hybrid de novo genome assembly of red gromwell (Lithospermum erythrorhizon) reveals evolutionary insight into shikonin biosynthesis
Cited by: 28
Author(s): Robert Auber, Thiti Suttiyut, Rachel M. McCoy, Manoj Ghaste, Joseph W. Crook, Amanda L. Pendleton, Joshua R. Widhalm, Jennifer H. Wisecaver
Software Mentions: 1
Published: over 4 years ago
10.1038/s41438-021-00476-4
Reannotation of the cultivated strawberry genome and establishment of a strawberry genome database
Cited by: 36
Author(s): Tianjia Liu, Muzi Li, Zhongchi Liu, Xiaoyan Ai, Yongping Li
Software Mentions: 1
Published: over 3 years ago
10.1016/j.bone.2018.06.001
Genome-wide association study of extreme high bone mass: Contribution of common genetic variation to extreme BMD phenotypes and potential novel BMD-associated genes
Cited by: 36
Author(s): Celia L Gregson, Felicity Newell, Paul Leo, Graeme R. Clark, Lavinia Paternoster, Mhairi Marshall, Vincenzo Forgetta, John Morris, Bing Ge, Xiao Bao, J. H. Duncan Bassett, Graham R. Williams, Scott E. Youlten, Peter I. Croucher, George Davey Smith, David M. Evans, John P. Kemp, Matthew A. Brown, Jonathan H Tobias, Emma L. Duncan
Software Mentions: 1
Published: about 6 years ago
10.1038/s41438-021-00613-z
An ancient whole-genome duplication event and its contribution to flavor compounds in the tea plant (Camellia sinensis)
Cited by: 22
Author(s): Ya Wang, Fei Chen, Yuanchun Ma, Taikui Zhang, Pengchuan Sun, Mei-Fang Lan, Fang Li, Wanping Fang
Software Mentions: 1
Published: over 3 years ago
10.1038/bcj.2017.94
High somatic mutation and neoantigen burden are correlated with decreased progression-free survival in multiple myeloma
Cited by: 121
Author(s): Amber C. Miller, Yan W. Asmann, Laura Cattaneo, Esteban Braggio, Jonathan J. Keats, Daniel Auclair, Sagar Lonial, Stephen J. Russell, A. Keith Stewart
Software Mentions: 1
Published: about 7 years ago
10.1038/s41438-019-0142-6
Updated annotation of the wild strawberry Fragaria vesca V4 genome
Cited by: 85
Author(s): Yongping Li, Mengting Pi, Qi Gao, Zhongchi Liu, Chunying Kang
Software Mentions: 1
Published: over 5 years ago
10.1038/s41437-021-00434-9
On the origin of the widespread self-compatible allotetraploid Capsella bursa-pastoris (Brassicaceae)
Cited by: 7
Author(s): Jörg A. Bachmann, Andrew Tedder, Marco Fracassetti, Kim A. Steige, Clément Lafon‐Placette, Claudia Köhler, Tanja Slotte
Software Mentions: 1
Published: over 3 years ago
10.1016/j.heliyon.2020.e05850
Atlas of ACE2 gene expression reveals novel insights into transmission of SARS-CoV-2
Cited by: 49
Author(s): Kun Sun, Liuqi Gu, Li Ma, Yugang Duan
Software Mentions: 1
Published: almost 4 years ago
10.1186/s13068-015-0391-z
Transcriptional program for nitrogen starvation-induced lipid accumulation in Chlamydomonas reinhardtii
Cited by: 53
Author(s): Adrián López García de Lomana, Sascha Schäuble, Jacob J. Valenzuela, Saheed Imam, Warren Carter, Damla D. Bilgin, Christopher B. Yohn, Serdar Turkarslan, David J Reiss, Mónica V. Orellana, Nathan D. Price, Nitin S. Baliga
Software Mentions: 1
Published: almost 9 years ago
10.1186/1477-7525-8-82
Validation study of a web-based assessment of functional recovery after radical prostatectomy
Cited by: 57
Author(s): Andrew J. Vickers, Caroline Savage, Marwan Shouery, James A. Eastham, Peter T. Scardino, Ethan Basch
Software Mentions: 1
Published: over 14 years ago
10.1186/s12955-018-0858-2
Assessing the reliability of the short form 12 (SF-12) health survey in adults with mental health conditions: a report from the wellness incentive and navigation (WIN) study
Cited by: 138
Author(s): Tianyao Huo, Yi Guo, Elizabeth Shenkman, Keith E. Muller
Software Mentions: 1
Published: almost 7 years ago
10.1080/16549716.2019.1664103
The logic model for Uganda’s health sector preparedness for public health threats and emergencies
Cited by: 12
Author(s): Alex Riolexus Ario, Issa Makumbi, Lilian Bulage, Simon Kyazze, Joshua Kayiwa, Milton Wetaka, Juliet N. Kasule, Felix Ocom
Software Mentions: 1
Published: almost 6 years ago
10.1007/s10439-015-1278-7
Hockey STAR: A Methodology for Assessing the Biomechanical Performance of Hockey Helmets
Cited by: 78
Author(s): Bethany Rowson, Steven Rowson, Stefan M. Duma
Software Mentions: 1
Published: over 9 years ago
10.1002/glia.23516
The miRNA biogenesis pathway prevents inappropriate expression of injury response genes in developing and adult Schwann cells
Cited by: 8
Author(s): Deniz Gökbuget, Jorge A. Pereira, Lennart Opitz, Dominik Christe, Tobias Keßler, Antonin Marchais, Ueli Suter
Software Mentions: 1
Published: about 6 years ago
10.1093/gigascience/giz019
<i>De novo</i> genome assembly of the white-spotted flower chafer (<i>Protaetia brevitarsis</i>)
Cited by: 25
Author(s): Kui Wang, Pengpeng Li, Yongyang Gao, Chunqin Liu, Qinglei Wang, Jing Yin, Jie Zhang, Geng Li, Changlong Shu
Software Mentions: 1
Published: over 5 years ago
10.1371/journal.ppat.1009582
Characterization of ALTO-encoding circular RNAs expressed by Merkel cell polyomavirus and trichodysplasia spinulosa polyomavirus
Cited by: 14
Author(s): Rong Yang, Eunice E. Lee, Jiwoong Kim, Joon Hwan Choi, Elysha Kolitz, Yating Chen, Clair Crewe, Nicholas J. H. Salisbury, Philipp E. Scherer, Clay J. Cockerell, Taylor R. Smith, Rosemary Son, Louisa Verlinden, Denise A. Galloway, Christopher B. Buck, Mariet C.W. Feltkamp, Christopher S. Sullivan, Richard C. Wang
Software Mentions: 1
Published: over 3 years ago
10.1093/gigascience/giy092
Hot-starting software containers for STAR aligner
Cited by: 8
Author(s): Pai Zhang, Ling‐Hong Hung, Wes Lloyd, Ka Yee Yeung
Software Mentions: 1
Published: over 6 years ago
10.1093/gigascience/gix081
Transcriptional mapping of the primary somatosensory cortex upon sensory deprivation
Cited by: 8
Author(s): Koen Kole, Yutaro Komuro, Jan Provazník, Jelena Pistolic, Vladimı́r Beneš, Paul Tiesinga, Tansu Celikel
Software Mentions: 1
Published: about 7 years ago
10.1093/gigascience/giy010
The genome sequence and transcriptome of Potentilla micrantha and their comparison to Fragaria vesca (the woodland strawberry)
Cited by: 37
Author(s): Matteo Buti, Marco Moretto, Elena Barghini, Flavia Mascagni, Lucia Natali, Matteo Brilli, Alexandre Lomsadze, Paolo Sonego, L. Giongo, Michael Alonge, Riccardo Velasco, Claudio Varotto, Nada Šurbanovski, Mark Borodovsky, J. A. Ward, Kristof Engelen, Andrea Cavallini, Alessandro Cestaro, Daniel J. Sargent
Software Mentions: 1
Published: almost 8 years ago
10.1093/gigascience/giy008
Draft genome assembly of the Bengalese finch, Lonchura striata domestica, a model for motor skill variability and learning
Cited by: 12
Author(s): Bradley M. Colquitt, David G. Mets, Michael S. Brainard
Software Mentions: 1
Published: almost 7 years ago
10.1093/gigascience/gix122
VaDiR: an integrated approach to Variant Detection in RNA
Cited by: 14
Author(s): Lisa Neums, Seiji Suenaga, Peter Beyerlein, Sara Anders, Devin C. Koestler, Andrea Mariani, Jeremy Chien
Software Mentions: 1
Published: almost 7 years ago
10.1093/gigascience/gix035
A high-coverage draft genome of the mycalesine butterfly Bicyclus anynana
Cited by: 45
Author(s): Reuben W. Nowell, Benjamin Elsworth, Vicencio Oostra, Bas J. Zwaan, Christopher W. Wheat, Marjo Saastamoinen, Ilik J. Saccheri, Arjen E Van’t Hof, Bethany R. Wasik, Heidi Connahs, Muhammad Aslam, Sujai Kumar, Richard Challis, Antónia Monteiro, Paul M. Brakefield, Mark Blaxter
Software Mentions: 1
Published: over 7 years ago
10.1093/gigascience/gix012
RED-ML: a novel, effective RNA editing detection method based on machine learning
Cited by: 27
Author(s): Heng Xiong, Dongbing Liu, Qiye Li, Mengyue Lei, Liqin Xu, Liang Wu, Zongji Wang, Shancheng Ren, Wangsheng Li, Min Xia, Lihua Lü, Haorong Lu, Yong Hou, Shida Zhu, Xin Liu, Ying Sun, Jian Wang, Huanming Yang, Kui Wu, Xun Xu, Leo J. Lee
Software Mentions: 1
Published: over 7 years ago
10.1186/s13742-015-0105-2
Colib’read on galaxy: a tools suite dedicated to biological information extraction from raw NGS reads
Cited by: 2
Author(s): Yvan Le Bras, Olivier Collin, Cyril Monjeaud, Vincent Lacroix, Éric Rivals, Claire Lemaitre, Vincent Miele, Gustavo Sacomoto, Camille Marchet, Bastien Cazaux, Amal Zine El Aabidine, Leena Salmela, Susete Alves‐Carvalho, Alexan Andrieux, Raluca Uricaru, Pierre Peterlongo
Software Mentions: 1
Published: almost 9 years ago
10.1016/j.gpb.2020.10.005
Chinese Glioma Genome Atlas (CGGA): A Comprehensive Resource with Functional Genomic Data from Chinese Glioma Patients
Cited by: 384
Author(s): Zheng Zhao, Kenan Zhang, Qiangwei Wang, Guanzhang Li, Fan Zeng, Ying Zhang, Fan Wu, Rui‐Chao Chai, Zheng Wang, Chuanbao Zhang, Wei Zhang, Zhaoshi Bao, Tao Jiang
Software Mentions: 1
Published: almost 4 years ago
10.1016/j.gpb.2016.02.003
Profiling and Validation of the Circular RNA Repertoire in Adult Murine Hearts
Cited by: 74
Author(s): Tobias Jakobi, Lisa F. Czaja-Hasse, Richard Reinhardt, Christoph Dieterich
Software Mentions: 1
Published: over 8 years ago
10.5808/GI.2020.18.1.e10
Accelerating next generation sequencing data analysis: an evaluation of optimized best practices for Genome Analysis Toolkit algorithms
Cited by: 29
Author(s): Karl R. Franke, Erin L. Crowgey
Software Mentions: 1
Published: over 4 years ago
10.1371/journal.ppat.1009908
Human parainfluenza virus type 1 regulates cholesterol biosynthesis and establishes quiescent infection in human airway cells
Cited by: 1
Author(s): Yoichi Kurebayashi, Shringkhala Bajimaya, Masahiro Watanabe, Nicholas Lim, Michael M. Lutz, Megan M Dunagan, Toru Takimoto
Software Mentions: 1
Published: about 3 years ago
10.1002/bit.27767
Rapid optimization of processes for the integrated purification of biopharmaceuticals
Cited by: 4
Author(s): Laura E. Crowell, S. Rodríguez, Kerry R. Love, Steven M. Cramer, J. Christopher Love
Software Mentions: 1
Published: over 3 years ago
10.5808/GI.2019.17.3.e32
Comparison of the MGISEQ-2000 and Illumina HiSeq 4000 sequencing platforms for RNA sequencing
Cited by: 29
Author(s): Sol A Jeon, Jong‐Lyul Park, Jong-Hwan Kim, Jeong Hwan Kim, Yong‐Sung Kim, Jin Cheon Kim, Seon‐Young Kim
Software Mentions: 1
Published: about 5 years ago
10.5808/GI.2019.17.1.e3
Identification of ERBB Pathway-Activated Cells in Triple-Negative Breast Cancer
Cited by: 8
Author(s): Soo Young Cho
Software Mentions: 1
Published: over 5 years ago
10.3390/polym12020467
Methods for Determining the Thermal Transfer in Phase-Changing Materials (PCMs)
Cited by: 2
Author(s): Vasile Bendic, Dan Dobrotă, Ionel Simion, Emilia Bălan, Nicoleta-Elisabeta Pascu, Dana Iuliana Tilina
Software Mentions: 1
Published: almost 5 years ago
10.3390/polym12051148
Epoxy-Anhydride Vitrimers from Aminoglycidyl Resins with High Glass Transition Temperature and Efficient Stress Relaxation
Cited by: 26
Author(s): Michael Giebler, Clemens Sperling, Simon Kaiser, Ivica Đuretek, Sandra Schlögl
Software Mentions: 1
Published: over 4 years ago
10.3390/polym12081642
Synthesis and Characterisation of Acrylic Resin-Al Powder Composites Suitable for Additive Manufacturing
Cited by: 4
Author(s): J. J. Relinque, Ismael Romero‐Ocaña, Francisco J. Navas‐Martos, Francisco Delgado, Manuel Domí­nguez, S. I. Molina
Software Mentions: 1
Published: over 4 years ago
10.3390/polym12092136
3D Printed Silicone Meniscus Implants: Influence of the 3D Printing Process on Properties of Silicone Implants
Cited by: 29
Author(s): Eric Luis, Houwen Matthew Pan, Anil K. Bastola, Ram Bajpai, Swee Leong Sing, Juha Song, Wai Yee Yeong
Software Mentions: 1
Published: about 4 years ago
10.3390/polym13152503
Kinetical Study, Thermo-Mechanical Characteristics and Recyclability of Epoxidized Camelina Oil Cured with Antagonist Structure (Aliphatic/Aromatic) or Functionality (Acid/Amine) Hardeners
Cited by: 10
Author(s): Chiara Di Mauro, Aratz Genua, Alice Mija
Software Mentions: 1
Published: over 3 years ago
10.1089/pop.2017.0109
Need for Comprehensive Health Care Quality Measures for Older Adults
Cited by: 16
Author(s): MacLeodStephanie, SchwebkeKay, HawkinsKevin, RuizJoann, HooEmma, S YehCharlotte
Software Mentions: 1
Published: over 6 years ago
10.1186/s13073-020-00746-1
The rate and spectrum of mosaic mutations during embryogenesis revealed by RNA sequencing of 49 tissues
Cited by: 21
Author(s): Francesc Muyas, Luís Zapata, Roderic Guigó, Stephan Ossowski
Software Mentions: 1
Published: over 4 years ago
10.3390/biom11081171
Characterization of the Skeletal Muscle Secretome Reveals a Role for Extracellular Vesicles and IL1α/IL1β in Restricting Fibro/Adipogenic Progenitor Adipogenesis
Cited by: 10
Author(s): Simone Vumbaca, Giulio Giuliani, Valeria Fiorentini, Flavia Tortolici, Andrea Cerquone Perpetuini, Federica Riccio, Simona Sennato, Cesare Gargioli, Claudia Fuoco, Luisa Castagnoli, Gianni Cesareni
Software Mentions: 1
Published: over 3 years ago
10.1073/pnas.1721434116
Microglia are effector cells of CD47-SIRPα antiphagocytic axis disruption against glioblastoma
Cited by: 166
Author(s): Gregor Hütter, Johanna Theruvath, Claus Moritz Graef, Michael Zhang, Matthew K. Schoen, Eva Maria Manz, Mariko L. Bennett, Andrew Olson, Tej D. Azad, Rahul Sinha, Carmel T. Chan, Suzana Assad Kahn, Sharareh Gholamin, Christy Wilson, Gerald A. Grant, Joy Q. He, Irving L. Weissman, Siddhartha Mitra, Samuel Cheshier
Software Mentions: 1
Published: almost 6 years ago
10.1186/s13073-019-0635-9
TCF21 and AP-1 interact through epigenetic modifications to regulate coronary artery disease gene expression
Cited by: 41
Author(s): Quanyi Zhao, Robert Wirka, Trieu Nguyen, Manabu Nagao, Paul Cheng, Clint L. Miller, Juyong Brian Kim, Milos Pjanic, Thomas Quertermous
Software Mentions: 1
Published: over 5 years ago
10.1073/pnas.1907031116
An influenza virus-triggered SUMO switch orchestrates co-opted endogenous retroviruses to stimulate host antiviral immunity
Cited by: 73
Author(s): Nora Schmidt, Patricia Domingues, Filip Gołębiowski, Corinna Patzina, Michael H. Tatham, Ronald T. Hay, Benjamin G. Hale
Software Mentions: 1
Published: over 5 years ago
10.1073/pnas.1908252116
Extracellular RNA in a single droplet of human serum reflects physiologic and disease states
Cited by: 43
Author(s): Zixu Zhou, Qiuyang Wu, Zhangming Yan, Haizi Zheng, Chien-Ju Chen, Yuan Liu, Zhijie Qi, Riccardo Calandrelli, Zhe Chen, Shu Chien, Hua Su, Sheng Zhong
Software Mentions: 1
Published: about 5 years ago
10.3390/biom11081182
Design and Evaluation of Synthetic RNA-Based Incoherent Feed-Forward Loop Circuits
Cited by: 7
Author(s): Seongho Hong, Dohyun Jeong, Jordan Ryan, Mathias Foo, Xiangdong Tang, Jongmin Kim
Software Mentions: 1
Published: over 3 years ago
10.1186/s13073-018-0567-9
Single-cell transcriptome analysis of lineage diversity in high-grade glioma
Cited by: 157
Author(s): Jinzhou Yuan, Hanna Mendes Levitin, Véronique Frattini, Erin C. Bush, Deborah Boyett, Jorge Samanamud, Michele Ceccarelli, Athanassios Dovas, George Zanazzi, Peter Canoll, Jeffrey N. Bruce, Anna Lasorella, Antonio Iavarone, Peter A. Sims
Software Mentions: 1
Published: over 6 years ago
10.3390/biom9120785
LCAT, ApoD, and ApoA1 Expression and Review of Cholesterol Deposition in the Cornea
Cited by: 19
Author(s): Rhonda Flores, Xueting Jin, Joan Chang, Connie Zhang, David G. Cogan, Ernst J. Schaefer, Howard S. Kruth
Software Mentions: 1
Published: almost 5 years ago
10.1186/s13073-015-0152-4
Calling genotypes from public RNA-sequencing data enables identification of genetic variants that affect gene-expression levels
Cited by: 71
Author(s): Patrick Deelen, Daria V. Zhernakova, Mark de Haan, Marijke van der Sijde, Marc Jan Bonder, Juha Karjalainen, K. Joeri van der Velde, Kristin M. Abbott, Jingyuan Fu, Cisca Wijmenga, Richard J. Sinke, Morris A. Swertz, Lude Franke
Software Mentions: 1
Published: over 9 years ago
10.1093/gbe/evab178
The Genome of the Haptophyte <i>Diacronema lutheri</i> (<i>Pavlova lutheri</i>, Pavlovales): A Model for Lipid Biosynthesis in Eukaryotic Algae
Cited by: 5
Author(s): Chris J. Hulatt, René H. Wijffels, Matthew C. Posewitz
Software Mentions: 1
Published: over 3 years ago
10.1093/gbe/evaa235
A New Dinoflagellate Genome Illuminates a Conserved Gene Cluster Involved in Sunscreen Biosynthesis
Cited by: 27
Author(s): Eiichi Shoguchi, Girish Beedessee, Kanako Hisata, Isao Tada, Haruhi Narisoko, Noriyuki Satoh, Masanobu Kawachi, Chuya Shinzato
Software Mentions: 1
Published: about 4 years ago
10.1073/pnas.2026605118
An introgressed gene causes meiotic drive in<i>Neurospora sitophila</i>
Cited by: 22
Author(s): Jesper Svedberg, Aaron A. Vogan, Nicholas A. Rhoades, Dilini Sarmarajeewa, David J. Jacobson, Martin Lascoux, Thomas M. Hammond, Hanna Johannesson
Software Mentions: 1
Published: over 3 years ago
10.1093/gbe/evaa195
Comprehensive Transcriptome of the Maize Stalk Borer,<i>Busseola fusca</i>, from Multiple Tissue Types, Developmental Stages, and Parasitoid Wasp Exposures
Cited by: 1
Author(s):
Software Mentions: 1
Published: about 4 years ago
10.1073/pnas.2100694118
Longer or shorter spines: Reciprocal trait evolution in stickleback via triallelic regulatory changes in <i>Stanniocalcin2a</i>
Cited by: 14
Author(s): Garrett A. Roberts Kingman, David Lee, Felicity C. Jones, Danielle Desmet, Michael A. Bell, David M. Kingsley
Software Mentions: 1
Published: over 3 years ago
10.1093/gbe/evz176
Multilayered Tuning of Dosage Compensation and Z-Chromosome Masculinization in the Wood White (Leptidea sinapis) Butterfly
Cited by: 4
Author(s): Lars Höök, Luis Leal, Venkat Talla, Niclas Backström
Software Mentions: 1
Published: over 5 years ago
10.3390/biomedicines9081057
The Histone Variant MacroH2A1 Impacts Circadian Gene Expression and Cell Phenotype in an In Vitro Model of Hepatocellular Carcinoma
Cited by: 2
Author(s): Annalucia Carbone, Elisabetta De Santis, Olga Cela, Vincenzo Giambra, Luca Miele, Giuseppe Marrone, Antonio Grieco, Marcus Buschbeck, Nazzareno Capitanio, Tommaso Mazza, Gianluigi Mazzoccoli
Software Mentions: 1
Published: over 3 years ago
10.1002/pros.23823
<i>TMPRSS2‐ERG</i> fusions linked to prostate cancer racial health disparities: A focus on Africa
Cited by: 23
Author(s): James Blackburn, Stefano Vecchiarelli, Erin E. Heyer, Sean Patrick, Ruth J. Lyons, Weerachai Jaratlerdsiri, Smit van Zyl, M. S. Bornman, Tim R. Mercer, Vanessa M. Hayes
Software Mentions: 1
Published: over 5 years ago
10.1007/s13238-016-0254-9
The key role of CYC2 during meiosis in Tetrahymena thermophila
Cited by: 11
Author(s): Qianlan Xu, Ruo–Yu Wang, Amr R. Ghanam, Guangwu Yan, Wei Miao, Xiaoyuan Song
Software Mentions: 1
Published: over 8 years ago
10.3390/biomedicines8120590
Authentication of Primary Murine Cell Lines by a Microfluidics-Based Lab-On-Chip System
Cited by: 4
Author(s): Ying‐Fen Hong, Nikita Singh, Stefanos A. Bamopoulos, Enio Gjerga, Laura K. Schmalbrock, Karl Balabanian, Markus Schick, Ulrich Keller, Matthias Wirth
Software Mentions: 1
Published: almost 4 years ago
10.7554/eLife.44702
CNS myelination and remyelination depend on fatty acid synthesis by oligodendrocytes
Cited by: 82
Author(s): Penelope Dimas, Laura Montani, Jorge A. Pereira, Daniel Antunes Moreno, Martin Trötzmüller, Joanne Gerber, Clay F. Semenkovich, Harald Köfeler, Ueli Suter
Software Mentions: 1
Published: over 5 years ago
10.1155/2018/7082095
Stay-Green QTLs Response in Adaptation to Post-Flowering Drought Depends on the Drought Severity
Cited by: 8
Author(s): Nasrein Mohamed Kamal, Yasir Serag Alnor Gorafi, Hisashi Tsujimoto, Abdelbagi Mukhtar Ali Ghanim
Software Mentions: 1
Published: about 6 years ago
10.1007/s11136-018-2039-5
Quality of life and service satisfaction in outpatients with severe or non-severe mental illness diagnoses
Cited by: 14
Author(s): Marian Ådnanes, Jorid Kalseth, Solveig Osborg Ose, Torleif Ruud, Jorun Rugkåsa, Stephen Puntis
Software Mentions: 1
Published: about 6 years ago
10.7554/eLife.39304
An ancient germ cell-specific RNA-binding protein protects the germline from cryptic splice site poisoning
Cited by: 20
Author(s): Ingrid Ehrmann, James H Crichton, Matthew R. Gazzara, Katherine James, Yilei Liu, Sushma Nagaraja Grellscheid, Tomaž Curk, Dirk G. de Rooij, Jannetta S. Steyn, Simon Cockell, Ian R. Adams, Yoseph Barash, David Elliott
Software Mentions: 1
Published: almost 6 years ago
10.1080/15476286.2020.1827619
SID-2 negatively regulates development likely independent of nutritional dsRNA uptake
Cited by: 2
Author(s): Fabian Braukmann, David Jordan, Benjamin H. Jenkins, Albert Koulman, Eric A. Miska
Software Mentions: 1
Published: about 4 years ago
10.1093/gbe/evz141
The Genome Sequence of the Anthelmintic-Susceptible New Zealand Haemonchus contortus
Cited by: 25
Author(s): Nikola Palevich, Paul Maclean, Abdul Baten, Richard W. Scott, David M Leathwick
Software Mentions: 1
Published: over 5 years ago
10.1186/s13059-021-02434-8
Specific splice junction detection in single cells with SICILIAN
Cited by: 12
Author(s): Roozbeh Dehghannasiri, Julia Eve Olivieri, Ana Damljanovic, Julia Salzman
Software Mentions: 1
Published: over 3 years ago
10.1186/s13059-021-02399-8
LIQA: long-read isoform quantification and analysis
Cited by: 37
Author(s): Yu Hu, Fang Li, Xuelian Chen, Jiang Zhong, Mingyao Li, Kai Wang
Software Mentions: 1
Published: over 3 years ago
10.1098/rsos.200625
Transcriptome analysis identified long non-coding RNAs involved in the adaption of yak to high-altitude environments
Cited by: 6
Author(s): Jinwei Xin, Zhixin Chai, Chengfu Zhang, Yumei Yang, Qiang Zhang, Yong Zhu, Hanwen Cao, Cidan Yang Ji, Jincheng Zhong, Qiumei Ji
Software Mentions: 1
Published: about 4 years ago
10.1155/2013/719570
Low Circulating Protein C Levels Are Associated with Lower Leg Ulcers in Patients with Diabetes
Cited by: 12
Author(s): Kaley Whitmont, Greg Fulcher, Ian A. Reid, Meilang Xue, Kelly McKelvey, Yuanliang Xie, Margaret Aboud, Christina Ward, Michael Smith, Alan Cooper, Lyn March, Chris Jackson
Software Mentions: 1
Published: almost 12 years ago
10.1186/1475-925X-13-43
Reducing the impact of insulin sensitivity variability on glycaemic outcomes using separate stochastic models within the STAR glycaemic protocol
Cited by: 17
Author(s): Felicity Thomas, Christopher G. Pretty, Liam Fisk, Geoffrey M. Shaw, J. Geoffrey Chase, Thomas Desaive
Software Mentions: 1
Published: over 10 years ago
10.1186/s12958-021-00715-2
Whole blood RNA sequencing reveals a differential transcriptomic profile associated with cervical insufficiency: a pilot study
Cited by: 4
Author(s): Ga Hyun Son, So Yeon Choi, Yeon-Ji Ju, Keun-Young Lee, Jae Jun Lee, Ji-Eun Song, Youngmi Kim, Sung Taek Park
Software Mentions: 1
Published: over 3 years ago
10.1186/s13059-021-02350-x
Intergenic RNA mainly derives from nascent transcripts of known genes
Cited by: 13
Author(s): Antonella Federico, Julian A. Zagalak, Jan Attig, Jernej Ule, Nicholas M. Luscombe
Software Mentions: 1
Published: over 3 years ago
10.1186/s13059-020-02180-3
Massive gene presence-absence variation shapes an open pan-genome in the Mediterranean mussel
Cited by: 89
Author(s): Marco Gerdol, Rebeca Moreira, Fernando Cruz, Jèssica Gómez‐Garrido, Anna Vlasova, Umberto Rosani, Paola Venier, Miguel A. Naranjo‐Ortiz, Maria Murgarella, Samuele Greco, Pablo Balseiro, André Corvelo, Leonor Frías, Marta Gut, Toni Gabaldón, Alberto Pallavicini, Carlos Canchaya, Beatriz Novoa, Tyler Alioto, David Posada, António Figueras
Software Mentions: 1
Published: about 4 years ago
10.1186/s13059-020-02094-0
Single-cell RNA-seq analysis reveals ploidy-dependent and cell-specific transcriptome changes in Arabidopsis female gametophytes
Cited by: 52
Author(s): Qingxin Song, Atsumi Ando, Ning Jiang, Yoko Ikeda, Z Jeffrey Chen
Software Mentions: 1
Published: over 4 years ago
10.3390/genes12060883
The Combined Human Genotype of Truncating TTN and RBM20 Mutations Is Associated with Severe and Early Onset of Dilated Cardiomyopathy
Cited by: 11
Author(s): Anna Gärtner, Julia Bloebaum, Hendrik Milting, Bärbel Klauke, Katharina Sielemann, Astrid Kassner, Henrik Fox, Michiel Morshuis, Jens Tiesmeier, Uwe Schulz, Ralph Knoell, Jan Gummert, Hendrik Milting
Software Mentions: 1
Published: over 3 years ago