10.1186/s13059-018-1496-z

Single-cell RNAseq for the study of isoforms—how is that possible?
Cited by: 93
Author(s): Ángeles Arzalluz-Luque, Ana Conesa
Software Mentions: 1
Published: almost 8 years ago

10.1155/2013/849363

Motion Detection in Diffusion MRI via Online ODF Estimation
Cited by: 9
Author(s): Emmanuel Caruyer, Iman Aganj, Christophe Lenglet, Guillermo Sapiro, Rachid Deriche
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0207503

Distinct vascular genomic response of proton and gamma radiation—A pilot investigation
Cited by: 3
Author(s): Emanuela Ricciotti, Dimitra Sarantopoulou, Gregory R. Grant, Jenine K. Sanzari, Gabriel Krigsfeld, Amber J. Kiliti, Ann R. Kennedy, Tilo Großer
Software Mentions: 1
Published: over 7 years ago

10.1007/s00401-019-02011-1

Blood vessels guide Schwann cell migration in the adult demyelinated CNS through Eph/ephrin signaling
Cited by: 17
Author(s): Beatriz García-Díaz, Corinne Bachelin, Fanny Coulpier, Gaspard Gerschenfeld, Cyrille Deboux, Violetta Zujovic, Patrick Charnay, Piotr Topilko, Anne Baron-Van Evercooren
Software Mentions: 1
Published: about 7 years ago

10.1186/s13059-018-1535-9

SeqOthello: querying RNA-seq experiments at scale
Cited by: 34
Author(s): Ye Yu, Jinpeng Liu, Xinan Liu, Yi Zhang, Eamonn Magner, Erik Lehnert, Chen Qian, Jinze Liu
Software Mentions: 1
Published: over 7 years ago

10.1186/s13054-017-1799-6

Software-guided versus nurse-directed blood glucose control in critically ill patients: the LOGIC-2 multicenter randomized controlled clinical trial
Cited by: 44
Author(s): Jasperina Dubois, Tom Van Herpe, Roosmarijn T. van Hooijdonk, Ruben Wouters, Domien Coart, Pieter Wouters, A. Van Assche, Guy Veraghtert, Bart De Moor, Joost Wauters, Alexander Wilmer, Marcus J. Schultz, Greet Van den Berghe, Dieter Mesotten
Software Mentions: 1
Published: almost 9 years ago

10.1038/s42003-020-0815-6

A white-to-opaque-like phenotypic switch in the yeast Torulaspora microellipsoides
Cited by: 1
Author(s): Cedric A. Brimacombe, Thomas Sierocinski, Matthew S. Dahabieh
Software Mentions: 1
Published: over 6 years ago

10.1186/s13059-018-1587-x

Downregulation of RdDM during strawberry fruit ripening
Cited by: 112
Author(s): Jingfei Cheng, Qingfeng Niu, Bo Zhang, Kunsong Chen, Rui Yang, Jian‐Kang Zhu, Yijing Zhang, Zhaobo Lang
Software Mentions: 1
Published: over 7 years ago

10.3390/ijms22158322

Efficient Generation of Neural Stem Cells from Embryonic Stem Cells Using a Three-Dimensional Differentiation System
Cited by: 5
Author(s): Sang Hoon Yoon, Mi-Rae Bae, Hyeonwoo La, Hyuk Song, Kwonho Hong, Jeong Tae
Software Mentions: 1
Published: almost 5 years ago

10.7554/eLife.67399

Loss of Tsc1 in cerebellar Purkinje cells induces transcriptional and translation changes in FMRP target transcripts
Cited by: 9
Author(s): Jasbir S. Dalal, Kellen D. Winden, Catherine L. Salussolia, Maria Sundberg, Achint K. Singh, Truc Pham, Pingzhu Zhou, William T. Pu, Meghan T. Miller, Mustafa Şahin
Software Mentions: 1
Published: almost 5 years ago

10.1007/s00395-020-00828-6

Functional investigation of the coronary artery disease gene SVEP1
Cited by: 20
Author(s): Michael J. Winkler, Philipp Müller, Amin M. Sharifi, Jana Wobst, Hanna Winter, Michal Mokrý, Lijiang Ma, Sander W. van der Laan, Shichao Pang, Benedikt Miritsch, Julia Hinterdobler, Julia Werner, Barbara Stiller, Ulrich Güldener, Tom R. Webb, Folkert W. Asselbergs, Johan Björkegren, Lars Maegdefessel, Heribert Schunkert, Hendrik B. Sager, Thorsten Kessler
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-020-68944-w

A G-quadruplex-binding compound shows potent activity in human gemcitabine-resistant pancreatic cancer cells
Cited by: 15
Author(s): Ahmed A. Ahmed, Chiara Marchetti, Stephan A. Ohnmacht, Stephen Neidle
Software Mentions: 1
Published: almost 6 years ago

10.3390/ijms22189865

Alternative Splicing Regulation of Low-Frequency Genetic Variants in Exon 2 of TREM2 in Alzheimer’s Disease by Splicing-Based Aggregation
Cited by: 10
Author(s): Seonggyun Han, Yirang Na, Insong Koh, Kwangsik Nho, Younghee Lee
Software Mentions: 1
Published: almost 5 years ago

10.3390/ijms22168359

TRPM2 Oxidation Activates Two Distinct Potassium Channels in Melanoma Cells through Intracellular Calcium Increase
Cited by: 28
Author(s): Loretta Ferrera, Raffaella Barbieri, Cristiana Picco, Paolo Zuccolini, Alessia Remigante, Sara Bertelli, Maria Rita Fumagalli, Giovanni Zifarelli, Caterina A. M. La Porta, Paola Gavazzo, Michael Pusch
Software Mentions: 1
Published: almost 5 years ago

10.1186/s12862-015-0403-4

Molecular phylogeny of the subfamily Stevardiinae Gill, 1858 (Characiformes: Characidae): classification and the evolution of reproductive traits
Cited by: 43
Author(s): Andréa T. Thomaz, Dahiana Arcila, Guillermo Ortı́, Luiz Roberto Malabarba
Software Mentions: 1
Published: almost 11 years ago

10.1186/s41927-018-0029-4

Identifying the unmet information and support needs of women with autoimmune rheumatic diseases during pregnancy planning, pregnancy and early parenting: mixed-methods study
Cited by: 29
Author(s): Rhiannon Phillips, Bethan Pell, Aimee Grant, D. Q. Bowen, Julia Sanders, Ann M. Taylor, Adrian Edwards, Ernest Choy, Denitza Williams
Software Mentions: 1
Published: almost 8 years ago

10.14814/phy2.14333

Impact of sex on diabetic nephropathy and the renal transcriptome in UNx db/db C57BLKS mice
Cited by: 11
Author(s): Frederikke E. Sembach, Lisbeth Nielsen Fink, Thea T. Johansen, Brandon B. Boland, Thomas Secher, Sebastian T. Thrane, Jens Nielsen, Keld Fosgerau, Niels Vrang, Jacob Jelsing, T. Pedersen, Morten Østergaard
Software Mentions: 1
Published: over 6 years ago

10.1186/s13059-019-1818-9

Global impact of somatic structural variation on the DNA methylome of human cancers
Cited by: 23
Author(s): Yiqun Zhang, Lixing Yang, Melanie Kucherlapati, Angela Hadjipanayis, Angeliki Pantazi, Christopher A. Bristow, Eunjung Alice Lee, Harshad S. Mahadeshwar, Jie Hu, Jianhua Zhang, Sahil Seth, Semin Lee, Xiaojia Ren, Xingzhi Song, Huandong Sun, Jonathan G. Seidman, Lovelace J. Luquette, Ruibin Xi, Lynda Chin, Alexei Protopopov, Peter J. Park, Raju Kucherlapati, Chad J. Creighton
Software Mentions: 1
Published: over 6 years ago

10.1186/s13104-017-2985-y

Consideration of non-canonical splice sites improves gene prediction on the Arabidopsis thaliana Niederzenz-1 genome sequence
Cited by: 23
Author(s): Boas Pucker, Daniela Holtgräwe, Bernd Weißhaar
Software Mentions: 1
Published: over 8 years ago

10.1186/s12862-018-1161-x

Unexpected conservation of the RNA splicing apparatus in the highly streamlined genome of Galdieria sulphuraria
Cited by: 13
Author(s): Huan Qiu, Alessandro W. Rossoni, Andreas P.M. Weber, Hwan Su Yoon, Debashish Bhattacharya
Software Mentions: 1
Published: over 8 years ago

10.1186/s12889-018-6120-3

The effectiveness and cost-effectiveness of community-based lay distribution of HIV self-tests in increasing uptake of HIV testing among adults in rural Malawi and rural and peri-urban Zambia: protocol for STAR (self-testing for Africa) cluster randomized evaluations
Cited by: 24
Author(s): Melissa Neuman, Pitchaya Indravudh, Richard Chilongosi, Marc d’Elbée, Nicola Desmond, Katherine Fielding, Bernadette Hensen, Cheryl Johnson, Phillip Mkandawire, Alwyn Mwinga, Mutinta Nalubamba, Gertrude Ncube, Lot Nyirenda, Rose Nyrienda, Eveline Otte im Kampe, Miriam Taegtmeyer, Fern Terris‐Prestholt, Helen A. Weiss, Karin Hatzold, Helen Ayles, Elizabeth L. Corbett
Software Mentions: 1
Published: over 7 years ago

10.1186/s12889-020-08614-8

Mechanisms of change and participant outcomes in a Recovery Education Centre for individuals transitioning from homelessness: a qualitative evaluation
Cited by: 10
Author(s): Nadine Reid, Bushra Khan, Sophie Soklaridis, Nicole Kozloff, Rebecca Brown, Vicky Stergiopoulos
Software Mentions: 1
Published: about 6 years ago

10.1186/s12888-019-2094-7

Recovery-focused mental health care planning and co-ordination in acute inpatient mental health settings: a cross national comparative mixed methods study
Cited by: 42
Author(s): Michael Coffey, Ben Hannigan, Sally Barlow, Martin Cartwright, Rachel Cohen, Alison Faulkner, Aled Jones, Alan Simpson
Software Mentions: 1
Published: about 7 years ago

10.1186/s12888-016-0858-x

Recovery-focused care planning and coordination in England and Wales: a cross-national mixed methods comparative case study
Cited by: 59
Author(s): Alan Simpson, Ben Hannigan, Michael Coffey, Sally Barlow, Rachel Cohen, Aled Jones, Jitka Všetečková, Alison Faulkner, Ashleigh Thornton, Martin Cartwright
Software Mentions: 1
Published: about 10 years ago

10.7554/eLife.54995

A non-canonical role for the EDC4 decapping factor in regulating MARF1-mediated mRNA decay
Cited by: 10
Author(s): Steven C. Hebert, Claudia L. Kleinman, Marc R. Fabian
Software Mentions: 1
Published: about 6 years ago

10.1186/1471-244X-12-25

Long acting risperidone in Australian patients with chronic schizophrenia: 24-month data from the e-STAR database
Cited by: 13
Author(s): Tim Lambert, B. T. Emmerson, Harry Hustig, Sophie Resseler, An Jacobs, Belinda Butcher
Software Mentions: 1
Published: over 14 years ago

10.1186/s13015-015-0046-4

A polynomial delay algorithm for the enumeration of bubbles with length constraints in directed graphs
Cited by: 2
Author(s): Gustavo Sacomoto, Vincent Lacroix, Marie‐France Sagot
Software Mentions: 1
Published: about 11 years ago

10.1186/s13059-019-1896-8

CTCF modulates allele-specific sub-TAD organization and imprinted gene activity at the mouse Dlk1-Dio3 and Igf2-H19 domains
Cited by: 49
Author(s): David Llères, Benoît Moindrot, Rakesh Pathak, Vincent Piras, Mélody Matelot, Benoît Pignard, Alice Marchand, Mallory Poncelet, Aurélien Perrin, Virgile Tellier, Robert Feil, Daan Noordermeer
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-020-69548-0

Apoptotic exosome-like vesicles regulate endothelial gene expression, inflammatory signaling, and function through the NF-κB signaling pathway
Cited by: 18
Author(s): Francis Migneault, Mélanie Dieudé, Julie Turgeon, Déborah Beillevaire, Marie-Pierre Hardy, Alexandre Brodeur, Nicolas Thibodeau, Claude Perreault, Marie‐Josée Hébert
Software Mentions: 1
Published: almost 6 years ago

10.1186/s13059-019-1895-9

deSALT: fast and accurate long transcriptomic read alignment with de Bruijn graph-based index
Cited by: 38
Author(s): Bo Liu, Yadong Liu, Junyi Li, Hongzhe Guo, Tianyi Zang, Yadong Wang
Software Mentions: 1
Published: over 6 years ago

10.1111/acel.13276

Prevalent intron retention fine‐tunes gene expression and contributes to cellular senescence
Cited by: 20
Author(s): Jun Yao, Dong Ding, Xueping Li, Ting Shen, Haihui Fu, Judy Zhong, Gang Wei, Ting Ni
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0192170

Induction of epigenetic variation in Arabidopsis by over-expression of DNA METHYLTRANSFERASE1 (MET1)
Cited by: 14
Author(s): Samuel George Philip Brocklehurst, Michael R. Watson, Ian Carr, Suzan Out, Iris Heidmann, Peter Meyer
Software Mentions: 1
Published: over 8 years ago

10.1186/1471-244X-8-95

The effect of antipsychotic medication on sexual function and serum prolactin levels in community-treated schizophrenic patients: results from the Schizophrenia Trial of Aripiprazole (STAR) study (NCT00237913)
Cited by: 78
Author(s): Linda Hanssens, Gilbert L’Italien, Jean‐Yves Loze, Ronald N. Marcus, Miranda Pans, Wendy Kerselaers
Software Mentions: 1
Published: over 17 years ago

10.1038/s41598-020-69676-7

ABCC8 mRNA expression is an independent prognostic factor for glioma and can predict chemosensitivity
Cited by: 14
Author(s): Kaijia Zhou, Yanwei Liu, Zheng Zhao, Yinyuan Wang, Lijie Huang, Rui‐Chao Chai, Guanzhang Li, Tao Jiang
Software Mentions: 1
Published: almost 6 years ago

10.1186/1471-244X-10-100

Randomised controlled trial of the clinical and cost effectiveness of a specialist team for managing refractory unipolar depressive disorder
Cited by: 18
Author(s): Richard Morriss, Sarah Marttunnen, Anne Garland, Neil Nixon, Ruth McDonald, Tim Sweeney, Heather Flambert, Richard Fox, Catherine Kaylor-Hughes, Marilyn James, Min Yang
Software Mentions: 1
Published: over 15 years ago

10.1186/1471-244X-12-42

Antipsychotic polypharmacy in a regional health service: a population-based study
Cited by: 34
Author(s): Miquel Bernardo, Anna Valeta Coma, Cristina Ibáñez, Corinne Zara, Josep Maria Bari, Antoni Serrano‐Blanco
Software Mentions: 1
Published: about 14 years ago

10.1038/s41598-020-69644-1

Isoform-specific functions of an evolutionarily conserved 3 bp micro-exon alternatively spliced from another exon in Drosophila homothorax gene
Cited by: 1
Author(s): Ling-Wen Chang, I-Chieh Tseng, Lan-Hsin Wang, Yi Sun
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12919-017-0084-7

Enhancing research careers: an example of a US national diversity-focused, grant-writing training and coaching experiment
Cited by: 25
Author(s): Harlan P. Jones, Richard McGee, Anne Marie Weber-Main, Dedra Buchwald, Spero M. Manson, Jamboor K. Vishwanatha, Kolawole S. Okuyemi
Software Mentions: 1
Published: over 8 years ago

10.1186/s12862-016-0769-y

Expanding anchored hybrid enrichment to resolve both deep and shallow relationships within the spider tree of life
Cited by: 141
Author(s): Chris A. Hamilton, Alan R. Lemmon, Emily Moriarty Lemmon, Jason E. Bond
Software Mentions: 1
Published: over 9 years ago

10.1186/s12870-019-2013-6

Using a transcriptome sequencing approach to explore candidate resistance genes against stemphylium blight in the wild lentil species Lens ervoides
Cited by: 25
Author(s): Zhe Cao, Li Li, Karan Kapoor, Sabine Banniza
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-020-68946-8

A genome-wide scan for candidate lethal variants in Thoroughbred horses
Cited by: 10
Author(s): Evelyn T. Todd, Peter Thomson, Natasha A. Hamilton, Rachel A. Ang, Gabriella Lindgren, Åsa Viklund, Staffan Eriksson, Sofia Mikko, Eric Strand, Brandon D. Velie
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12870-019-1969-6

Changes in gene expression and metabolic profile of drupes of Olea europaea L. cv Carolea in relation to maturation stage and cultivation area
Cited by: 19
Author(s): Leonardo Bruno, Ernesto Picardi, Marianna Pacenza, Adriana Chiappetta, Antonella Muto, Olimpia Gagliardi, Innocenzo Muzzalupo, Graziano Pesole, Maria Beatrice Bitonti
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms21207466

The BDNF rs6265 Polymorphism is a Modifier of Cardiomyocyte Contractility and Dilated Cardiomyopathy
Cited by: 5
Author(s): F Raucci, Anand Prakash Singh, Jonathan H. Soslow, Larry W. Markham, Lin Zhong, Wejdan Aljafar, Natasja Lessiohadi, Cassandra P. Awgulewitsch, Prachi Umbarkar, Qinkun Zhang, Presley L. Cannon, Maciej S. Buchowski, Joseph T. Roland, Erica J. Carrier, W. Bryan Burnette, Antonis K. Hatzopoulos, Hind Lal, Cristi L. Galindo
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0122602

Binary Gene Expression Patterning of the Molt Cycle: The Case of Chitin Metabolism
Cited by: 23
Author(s): Shai Abehsera, Lilah Glazer, Jenny Tynyakov, Inbar Plaschkes, Vered Chalifa‐Caspi, Isam Khalaila, Eliahu D. Aflalo, Amir Sagi
Software Mentions: 1
Published: about 11 years ago

10.1186/s12870-021-03045-y

BRS1 mediates plant redox regulation and cold responses
Cited by: 3
Author(s): Dongzhi Zhang, Yuqian Zhao, Junzhe Wang, Peng Zhao, Shengbao Xu
Software Mentions: 1
Published: about 5 years ago

10.1186/s12870-019-2185-0

Metatranscriptomic dynamics after Verticillium dahliae infection and root damage in Olea europaea
Cited by: 4
Author(s): Jose Manuel Martí, Luis F. Arias-Giraldo, Wladimiro Dı́az-Villanueva, Vicente Arnau, Antonio Rodríguez-Franco, Carlos P. Garay
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-020-70546-5

Seasonal effects on miRNA and transcriptomic profile of oocytes and follicular cells in buffalo (Bubalus bubalis)
Cited by: 9
Author(s): Emanuele Capra, Barbara Lazzari, Marco Russo, Michal Andrzej Kosior, Giovanni Della Valle, V. Longobardi, Alessandra Stella, A. Lange Consiglio, B. Gasparrini
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0232081

Engineering a 3D in vitro model of human skeletal muscle at the single fiber scale
Cited by: 15
Author(s): Anna Urciuolo, Elena Serena, Rusha Ghua, Susi Zatti, Monica Giomo, Nicolò Mattei, Massimo Vetralla, Giulia Selmin, Camilla Luni, Nicola Vitulo, Giorgio Valle, Libero Vitiello, Nicola Elvassore
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-020-70529-6

The P-glycoprotein repertoire of the equine parasitic nematode Parascaris univalens
Cited by: 13
Author(s): Alexander P. Gerhard, Jürgen Krücken, Emanuel Heitlinger, I. Jana I. Janssen, Marta Basiaga, Sławomir Kornaś, Céline Beier, Martin K. Nielsen, Richard E. Davis, Jianbin Wang, Georg von Samson‐Himmelstjerna
Software Mentions: 1
Published: almost 6 years ago

10.1038/s42003-020-0928-y

BMPR2 promotes fatty acid oxidation and protects white adipocytes from cell death in mice
Cited by: 13
Author(s): Shuwen Qian, Jiabao Pan, Yan Su, Yan Tang, Yina Wang, Ying Zou, Yi Zhao, Hong Ma, Youyou Zhang, Yang Liu, Liang Guo, Qi‐Qun Tang
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0187773

Lung epithelial response to cigarette smoke and modulation by the nicotinic alpha 7 receptor
Cited by: 18
Author(s): Lorise C. Gahring, Elizabeth J. Myers, Diane M. Dunn, Robert B. Weiss, Scott W. Rogers
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0125414

The Expansion of Thymopoiesis in Neonatal Mice Is Dependent on Expression of High Mobility Group A 2 Protein (Hmga2)
Cited by: 5
Author(s): Beata Berent-Maoz, Encarnación Montecino-Rodriguez, Michael P. Fice, David Casero, Christopher S. Seet, William E. Lowry, Kenneth Dorshkind
Software Mentions: 1
Published: about 11 years ago

10.1186/s12862-018-1120-6

Population size may shape the accumulation of functional mutations following domestication
Cited by: 13
Author(s): Jianhai Chen, Peihong Ni, Xinyun Li, Jianlin Han, Ivan Jakovlić, Chengjun Zhang, Shuhong Zhao
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-020-70977-0

The proanthocyanin-related transcription factors MYBC1 and WRKY44 regulate branch points in the kiwifruit anthocyanin pathway
Cited by: 41
Author(s): Yongyan Peng, Amali H. Thrimawithana, Janine M. Cooney, Dwayne J. Jensen, Richard V. Espley, Andrew C. Allan
Software Mentions: 1
Published: almost 6 years ago

10.3390/ijms22168385

LINC01133 Inhibits Invasion and Promotes Proliferation in an Endometriosis Epithelial Cell Line
Cited by: 2
Author(s): Iveta Yotova, Quanah J. Hudson, Florian M. Pauler, Katharina Proestling, Isabella Haslinger, Lorenz Kuessel, Alexandra Perricos, H Husslein, René Wenzl
Software Mentions: 1
Published: almost 5 years ago

10.3390/jof5020053

Aspergillus flavus NRRL 35739, a Poor Biocontrol Agent, May Have Increased Relative Expression of Stress Response Genes
Cited by: 10
Author(s): Kayla K. Pennerman, Guohua Yin, Joan W. Bennett, Sui-Sheng T. Hua
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-020-71298-y

Oncogenes overexpressed in metastatic oral cancers from patients with pain: potential pain mediators released in exosomes
Cited by: 16
Author(s): Aditi Bhattacharya, Malvin N. Janal, Ratna Veeramachaneni, Igor Dolgalev, Zinaida A. Dubeykovskaya, Nguyen Huu Tu, Hyesung Kim, Susanna Zhang, Angie K. Wu, Mari Hagiwara, Alexander Ross Kerr, Mark D. DeLacure, Brian L. Schmidt, Donna G. Albertson
Software Mentions: 1
Published: almost 6 years ago

10.3390/ijms21218322

LINC00973 Induces Proliferation Arrest of Drug-Treated Cancer Cells by Preventing p21 Degradation
Cited by: 4
Author(s): Dmitry S. Karpov, Pavel Spirin, Andrei O. Zheltukhin, Vera V. Tutyaeva, Olga L. Zinovieva, E. N. Grineva, Vera A. Matrosova, George S. Krasnov, Anastasiya V. Snezhkina, Anna V. Kudryavtseva, Vladimir Prassolov, T. D. Mashkova, Н. А. Лисицын
Software Mentions: 1
Published: over 5 years ago

10.1186/s12870-019-2191-2

Over-expression of poplar NAC15 gene enhances wood formation in transgenic tobacco
Cited by: 15
Author(s): Wenjing Yao, Dawei Zhang, Boru Zhou, Jianping Wang, Renhua Li, Tingbo Jiang
Software Mentions: 1
Published: over 6 years ago

10.3390/jof7060409

Global Transcriptional Response of Aspergillus niger to Blocked Active Citrate Export through Deletion of the Exporter Gene
Cited by: 6
Author(s): Thanaporn Laothanachareon, Lyon Bruinsma, Bart Nijsse, Tom Schonewille, María Suárez-Diez, Juan Antonio Tamayo-Ramos, Vítor A. P. Martins dos Santos, Peter J. Schaap
Software Mentions: 1
Published: about 5 years ago

10.1007/s10162-012-0323-6

Effects of Frequency Discrimination Training on Tinnitus: Results from Two Randomised Controlled Trials
Cited by: 33
Author(s): Derek J. Hoare, Victoria L. Kowalkowski, Deborah A. Hall
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0200477

SAP97 regulates behavior and expression of schizophrenia risk enriched gene sets in mouse hippocampus
Cited by: 14
Author(s): Preetika Gupta, Ogul E. Uner, Soumyashant Nayak, Gregory R. Grant, Robert G. Kalb
Software Mentions: 1
Published: almost 8 years ago

10.1186/s12861-019-0196-6

Deletion of Tet proteins results in quantitative disparities during ESC differentiation partially attributable to alterations in gene expression
Cited by: 7
Author(s): Michael Reimer, Kirthi Pulakanti, Linzheng Shi, Alex M. Abel, Mingyu Liang, Subramaniam Malarkannan, Sridhar Rao
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0129183

Weighted Statistical Binning: Enabling Statistically Consistent Genome-Scale Phylogenetic Analyses
Cited by: 104
Author(s): Shamsuzzoha Bayzid, Siavash Mirarab, Bastien Boussau, Tandy Warnow
Software Mentions: 1
Published: about 11 years ago

10.1016/j.cell.2018.06.019

A Complete Electron Microscopy Volume of the Brain of Adult Drosophila melanogaster
Cited by: 667
Author(s): Zhihao Zheng, J. Scott Lauritzen, Eric Perlman, Camenzind G. Robinson, Matthew Nichols, Daniel E. Milkie, Omar Torrens, J. W. Price, Corey B. Fisher, Nadiya Sharifi, Steven A. Calle-Schuler, Lucia Kmecova, Iqbal J. Ali, Bill Karsh, Eric T. Trautman, John A. Bogovic, Philipp Hanslovsky, Gregory Jefferis, Michael Kazhdan, Khaled Khairy, Stephan Saalfeld, Richard D. Fetter, Davi D. Bock
Software Mentions: 1
Published: about 8 years ago

10.1074/jbc.AC120.014698

Naturally occurring hotspot cancer mutations in Gα13 promote oncogenic signaling
Cited by: 18
Author(s): Marcin Maziarz, Anthony Federico, Jingyi Zhao, Lorena Dujmusic, Zhiming Zhao, Stefano Monti, Xaralabos Varelas, Mikel Garcia‐Marcos
Software Mentions: 1
Published: over 5 years ago

10.1186/cc10779

Pilot trial of STAR in the medical ICU
Cited by: 0
Author(s): Liam Fisk, Aaron Le Compte, GM Shaw, Sophie Penning, Thomas Desaive, J. Geoffrey Chase
Software Mentions: 1
Published: over 14 years ago

10.1186/s12870-016-0736-1

Genomic and transcriptomic comparison of nucleotide variations for insights into bruchid resistance of mungbean (Vigna radiata [L.] R. Wilczek)
Cited by: 36
Author(s): Mao-Sen Liu, Tony Kuo, Chih‐Yuan Ko, Dung-Chi Wu, Kuanyi Li, Wu-Jui Lin, Ching-Ping Lin, Yen-Wei Wang, Roland Schafleitner, Hsiao-Feng Lo, Chien‐Yu Chen, Long‐Fang O. Chen
Software Mentions: 1
Published: over 10 years ago

10.1016/j.cub.2018.03.041

Coin Tossing Explains the Activity of Opposing Microtubule Motors on Phagosomes
Cited by: 16
Author(s): Paulomi Sanghavi, Ashwin D’Souza, Ashim Rai, Arpan Rai, Ranjith Padinhatheeri, Roop Mallik
Software Mentions: 1
Published: about 8 years ago

10.1186/s13054-020-03187-9

40th International Symposium on Intensive Care & Emergency Medicine 2020 – Part 2
Cited by: 0
Author(s):
Software Mentions: 1
Published: almost 6 years ago

10.3390/cancers13071546

Pulsed-Focused Ultrasound Slows B16 Melanoma and 4T1 Breast Tumor Growth through Differential Tumor Microenvironmental Changes
Cited by: 5
Author(s): Gadi Cohen, Parwathy Chandran, Rebecca M. Lorsung, Ömer Aydın, Lauren E. Tomlinson, Robert Rosenblatt, Scott R. Burks, Joseph A. Frank
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-020-73787-6

Assessment of long non-coding RNA expression reveals novel mediators of the lung tumour immune response
Cited by: 16
Author(s): Adam P. Sage, Kevin W. Ng, Erin A. Marshall, Greg L. Stewart, Brenda C. Minatel, Katey S.S. Enfield, Spencer D. Martin, Carolyn J. Brown, Ninan Abraham, Wan L. Lam
Software Mentions: 1
Published: over 5 years ago

10.1016/j.cell.2016.06.020

Genetic Codes with No Dedicated Stop Codon: Context-Dependent Translation Termination
Cited by: 132
Author(s): Estienne C. Swart, Valentina Serra, Giulio Petroni, Mariusz Nowacki
Software Mentions: 1
Published: about 10 years ago

10.1111/acel.12957

Transcription factor networks in aged naïve CD4 T cells bias lineage differentiation
Cited by: 32
Author(s): Bin Hu, Guangjin Li, Zhongde Ye, Claire E. Gustafson, Lu Tian, Cornelia M. Weyand, Jörg J. Goronzy
Software Mentions: 1
Published: about 7 years ago

10.3390/cancers12071719

Dysregulation of MITF Leads to Transformation in MC1R-Defective Melanocytes
Cited by: 5
Author(s): Timothy J. Lavelle, Tine Norman Alver, Karen‐Marie Heintz, Patrik Wernhoff, Vegard Nygaard, Sigve Nakken, Geir Frode Øy, Sigurd Leinæs Bøe, Alfonso Urbanucci, Eivind Hovig
Software Mentions: 1
Published: about 6 years ago

10.1186/s12861-021-00245-5

Msx1 haploinsufficiency modifies the Pax9-deficient cardiovascular phenotype
Cited by: 6
Author(s): Ramada R. Khasawneh, Ralf Kist, Rachel Queen, Rafiqul Hussain, Jonathan Coxhead, Jürgen Schneider, Timothy J. Mohun, Stéphane Zaffran, Heiko Peters, Helen M. Phillips, Simon D. Bamforth
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-75048-y

Physiological demands and signaling associated with snake venom production and storage illustrated by transcriptional analyses of venom glands
Cited by: 10
Author(s): Blair W. Perry, Drew R. Schield, Aundrea K. Westfall, Stephen P. Mackessy, Todd A. Castoe
Software Mentions: 1
Published: over 5 years ago

10.1186/s12885-020-07135-2

Global targetome analysis reveals critical role of miR-29a in pancreatic stellate cell mediated regulation of PDAC tumor microenvironment
Cited by: 12
Author(s): Shatovisha Dey, Sheng Liu, Tricia D. Factora, Solaema Taleb, Primavera Riverahernandez, Lata Udari, Xiaoling Zhong, Jun Wan, Janaiah Kota
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0134958

A Biochemical Approach to Understand the Pathogenesis of Advanced Pulmonary Arterial Hypertension: Metabolomic Profiles of Arginine, Sphingosine-1-Phosphate, and Heme of Human Lung
Cited by: 38
Author(s): Yidan Zhao, Lei Chu, Kathleen Watson Lin, Elise Granton, Li Yin, Jiming Peng, Michael Hsin, Licun Wu, Amy Yu, Thomas K. Waddell, Shaf Keshavjee, John Granton, Marc de Perrot
Software Mentions: 1
Published: almost 11 years ago

10.1186/s12859-019-2786-5

Ryūtō: network-flow based transcriptome reconstruction
Cited by: 20
Author(s): Thomas Gatter, Peter F. Stadler
Software Mentions: 1
Published: about 7 years ago

10.1002/jcsm.12486

Myopalladin promotes muscle growth through modulation of the serum response factor pathway
Cited by: 23
Author(s): Maria Carmela Filomena, Daniel L. Yamamoto, Marco Caremani, Vinay Kumar Kadarla, Giuseppina Mastrototaro, Simone Serio, Anupama Vydyanath, Margherita Mutarelli, Arcamaria Garofalo, Irene Pertici, Ralph Knöll, Vincenzo Nigro, Pradeep K. Luther, Richard L. Lieber, Moriah R. Beck, Marco Linari, Marie Louise Bang
Software Mentions: 1
Published: over 6 years ago

10.1186/s40425-019-0758-y

Immunogenicity of prostate cancer is augmented by BET bromodomain inhibition
Cited by: 49
Author(s): Wendy Mao, Ali Ghasemzadeh, Zachary T. Freeman, Aleksandar Z. Obradovic, Matthew G. Chaimowitz, Thomas R. Nirschl, Emily McKiernan, Srinivasan Yegnasubramanian, Charles G. Drake
Software Mentions: 1
Published: over 6 years ago

10.3390/cancers13092250

IGF2 Mediates Resistance to Isoform-Selective-Inhibitors of the PI3K in HPV Positive Head and Neck Cancer
Cited by: 6
Author(s): Mai Badarni, Manu Prasad, Artemiy Golden, Baisali Bhattacharya, Liron Levin, Ksenia M. Yegodayev, Orr Dimitstein, Ben‐Zion Joshua, Limor Cohen, Ekaterina Khrameeva, Dexin Kong, Angel Porgador, Alex Braiman, Jennifer R. Grandis, Barak Rotblat, Moshe Elkabets
Software Mentions: 1
Published: about 5 years ago

10.1186/s43141-020-00037-7

Effective multi-functional biotechnological applications of protease/keratinase enzyme produced by new Egyptian isolate (Laceyella sacchari YNDH)
Cited by: 10
Author(s): Doaa A. Goda, Ahmad R. Bassiouny, Nihad M. Abdel Monem, Nadia A. Soliman, Yasser R. Abdel-Fattah
Software Mentions: 1
Published: about 6 years ago

10.7554/eLife.28768

Differential requirements of androgen receptor in luminal progenitors during prostate regeneration and tumor initiation
Cited by: 26
Author(s): Chee Wai Chua, Nusrat J Epsi, Eva Leung, Shouhong Xuan, Ming Lei, Bo I Li, Sarah K. Bergren, Hanina Hibshoosh, Antonina Mitrofanova, Michael M. Shen
Software Mentions: 1
Published: over 8 years ago

10.7150/jca.55553

Exosomal miR-1305 in the oncogenic activity of hypoxic multiple myeloma cells: a biomarker for predicting prognosis
Cited by: 15
Author(s): Ji Young Lee, Daeun Ryu, Se-won Lim, Kyung Ju Ryu, Myung Eun Choi, Sang Eun Yoon, Kihyun Kım, Chaehwa Park, Seok Jin Kim
Software Mentions: 1
Published: over 5 years ago

10.7150/jca.56340

Highly deregulated lncRNA LOC is associated with overall worse prognosis in Hepatocellular Carcinoma patients
Cited by: 2
Author(s): Li Min Lim, Lay Hiang Ling, Yu Pei Neo, Alexander Chung, Brian K. P. Goh, Pierce K. H. Chow, Chung Yip Chan, Peng Chung Cheow, Ser Yee Lee, Tony Kiat-Hon Lim, Samuel S. Chong, London Lucien Ooi, Caroline Lee
Software Mentions: 1
Published: over 5 years ago

10.20517/2394-4722.2018.84

AF1q inhibited T cell attachment to breast cancer cell by attenuating Intracellular Adhesion Molecule-1 expression
Cited by: 4
Author(s): Jino Park, Jae Yeon Hwang, Alexandra Thore, Soojin Kim, Tomiteru Togano, Shotaro Hagiwara, Juw Won Park, William Tse
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-020-75102-9

Umbilical cord tissue is a robust source for mesenchymal stem cells with enhanced myogenic differentiation potential compared to cord blood
Cited by: 14
Author(s): Sanjay Mishra, Jayesh Kumar Sevak, Anamica Das, Aneeshkumar G. Arimbasseri, Shinjini Bhatnagar, Suchitra D. Gopinath
Software Mentions: 1
Published: over 5 years ago

10.1111/jce.14201

STAR mapping method to identify driving sites in persistent atrial fibrillation: Application through sequential mapping
Cited by: 18
Author(s): Shohreh Honarbakhsh, Richard J. Schilling, Malcolm Finlay, Emily Keating, Waqas Ullah, Ross J. Hunter
Software Mentions: 1
Published: almost 7 years ago

10.1083/jcb.201908078

Analysis of copy number alterations reveals the lncRNA ALAL-1 as a regulator of lung cancer immune evasion
Cited by: 30
Author(s): Alejandro Athie, Francesco P. Marchese, Jovanna González, Teresa Lozano, Ivan Raimondi, Prasanna Kumar Juvvuna, Amaya Abad, Oskar Marín-Béjar, Jacques Serizay, Dannys Martínez, Daniel Ajona, María J. Pajares, Juan Sandoval, Luis M. Montuenga, Chandrasekhar Kanduri, Juan José Lasarte, Maite Huarte
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0254709

Comparative transcriptome analysis of unripe and ripe banana (cv. Nendran) unraveling genes involved in ripening and other related processes
Cited by: 5
Author(s): Karambir Kaur, Praveen Awasthi, Siddharth Tiwari
Software Mentions: 1
Published: almost 5 years ago

10.1186/1471-2407-10-566

Raloxifene inhibits tumor growth and lymph node metastasis in a xenograft model of metastatic mammary cancer
Cited by: 14
Author(s): Masa‐Aki Shibata, Junji Morimoto, Eiko Shibata, Hitomi Kurose, Kanako Akamatsu, Zhong‐Lian Li, Moriaki Kusakabe, Masahide Ohmichi, Yoshinori Otsuki
Software Mentions: 1
Published: over 15 years ago

10.2196/formative.9083

A Web-Based Platform for People With Memory Problems and Their Caregivers (CAREGIVERSPRO-MMD): Mixed-Methods Evaluation of Usability
Cited by: 8
Author(s): Evi Zafeiridi, Kevin Paulson, Rosie Dunn, Emma Wolverson, Caroline White, Jonathan Thorpe, Marco Antomarini, Francesca Cesaroni, Francesca Scocchera, Isabelle Landrin-Dutot, Laëtitia Malherbe, Hendi Lingiah, Marie Bérard, Xavier Gironès, M. Quintana, Ulises Cortés, Cristian Barrué, Àtia Cortés, Ioannis Paliokas, Konstantinos Votis, Dimitrios Tzovaras
Software Mentions: 1
Published: over 8 years ago

10.1186/1471-2199-11-48

High-affinity consensus binding of target RNAs by the STAR/GSG proteins GLD-1, STAR-2 and Quaking
Cited by: 12
Author(s): Andrew B. Carmel, Jerry Wu, Katrina A. Lehmann-Blount, James R. Williamson
Software Mentions: 1
Published: over 16 years ago

10.1111/jcmm.15702

BMP2 signalling activation enhances bone metastases of non‐small cell lung cancer
Cited by: 19
Author(s): Fei Huang, Cao Yun, Gui Wu, Junying Chen, CaihongWang, Wanzun Lin, Ruilong Lan, Bing Wu, Xianhe Xie, Jinsheng Hong, Liya Fu
Software Mentions: 1
Published: almost 6 years ago

10.1002/advs.202100805

A 3D Fiber‐Hydrogel Based Non‐Viral Gene Delivery Platform Reveals that microRNAs Promote Axon Regeneration and Enhance Functional Recovery Following Spinal Cord Injury
Cited by: 33
Author(s): Na Zhang, Junquan Lin, Vincent Po Hen Lin, Ulla Milbreta, Jiah Shin Chin, Elaine Guo Yan Chew, Michelle Mulan Lian, Jia Nee Foo, Kunyu Zhang, Wutian Wu, Sing Yian Chew
Software Mentions: 1
Published: about 5 years ago

10.3390/ijms21228785

Human Thymic CD10+ PD-1+ Intraepithelial Lymphocyte Precursors Acquire Interleukin-15 Responsiveness at the CD1a– CD95+ CD28– CCR7– Developmental Stage
Cited by: 7
Author(s): Lore Billiet, Glenn Goetgeluk, Sarah Bonte, Stijn De Munter, Laurenz De Cock, Melissa Pille, Joline Ingels, Hanne Jansen, Karin Weening, Filip Van Nieuwerburgh, Tessa Kerre, Tom Taghon, Georges Leclercq, Bart Vandekerckhove
Software Mentions: 1
Published: over 5 years ago

10.1186/s12885-020-07081-z

MiR-34c downregulation leads to SOX4 overexpression and cisplatin resistance in nasopharyngeal carcinoma
Cited by: 18
Author(s): Pierre-Antoine Bissey, Mona Teng, Jacqueline H. Law, Wei Shi, Jeff Bruce, Valentin Petit, Sai Wah Tsao, Kenneth W. Yip, Feifei Liu
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0076570

Metabolism and Fatty Acid Profile in Fat and Lean Rainbow Trout Lines Fed with Vegetable Oil: Effect of Carbohydrates
Cited by: 52
Author(s): Biju Sam Kamalam, Françoise Médale, Laurence Larroquet, Généviève Corraze, Stéphane Panserat
Software Mentions: 1
Published: almost 13 years ago