10.1002/cam4.42

Proceedings of the I ndo‐ U.S. bilateral workshop on accelerating botanicals/biologics agent development research for cancer chemoprevention, treatment, and survival
Cited by: 2
Author(s): Nagi B. Kumar, Medha Dhurandhar, Bharat B. Aggarwal, Shrikant Anant, Kenyon G. Daniel, Gary Deng, Julie Y. Djeu, Jinhui Dou, Ernest T. Hawk, B. Jayaram, Jia Lee, Rajendra Joshi, Madhuri Kararala, Devarajan Karunagaran, Ömer Küçük, Lalit Kumar, Mokenge P. Malafa, G. J. Samathanam, Fazlul H. Sarkar, Maqsood Siddiqi, Rana P. Singh, A. K. Srivastava, Jeffrey D. White
Software Mentions: 1
Published: almost 14 years ago

10.1093/jxb/erx044

Three FT and multiple CEN and BFT genes regulate maturity, flowering, and vegetative phenology in kiwifruit
Cited by: 31
Author(s): Charlotte Voogd, Lara Brian, Tianchi Wang, Andrew C. Allan, Erika Varkonyi‐Gasic
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pgen.1008460

A missense mutation in SNRPE linked to non-syndromal microcephaly interferes with U snRNP assembly and pre-mRNA splicing
Cited by: 17
Author(s): Tao Chen, Bin Zhang, Thomas Ziegenhals, Archana Bairavasundaram Prusty, Sebastian Fröhler, Clemens Grimm, Yuhui Hu, Bernhard Schaefke, Liang Fang, Min Zhang, Nadine Kraemer, Angela M. Kaindl, Utz Fischer, Wei Chen
Software Mentions: 1
Published: almost 7 years ago

10.1093/jxb/erz558

Mapping a double flower phenotype-associated gene DcAP2L in Dianthus chinensis
Cited by: 15
Author(s): Qijian Wang, Xiaoni Zhang, Shengnan Lin, Shaozong Yang, Xiuli Yan, Mohammed Bendahmane, Manzhu Bao, Xiaopeng Fu
Software Mentions: 1
Published: over 6 years ago

10.1093/bioinformatics/btz033

Improved indel detection in DNA and RNA via realignment with ABRA2
Cited by: 45
Author(s): Lisle E. Mose, Charles M. Perou, Joel S. Parker
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0192170

Induction of epigenetic variation in Arabidopsis by over-expression of DNA METHYLTRANSFERASE1 (MET1)
Cited by: 14
Author(s): Samuel George Philip Brocklehurst, Michael R. Watson, Ian Carr, Suzan Out, Iris Heidmann, Peter Meyer
Software Mentions: 1
Published: over 8 years ago

10.1093/jxb/eraa315

Arabidopsis exoribonuclease USB1 interacts with the PPR-domain protein SOAR1 to negatively regulate abscisic acid signaling
Cited by: 11
Author(s): Ma Yu, Shang Zhang, Chao Bi, Chao Mei, Shang-Chuan Jiang, Xiaofang Wang, Zhi John Lu, David Zhang
Software Mentions: 1
Published: almost 6 years ago

10.1093/bioinformatics/btw076

<i>SplAdder</i>: identification, quantification and testing of alternative splicing events from RNA-Seq data
Cited by: 117
Author(s): André Kahles, Cheng Soon Ong, Yi Zhong, Gunnar Rätsch
Software Mentions: 1
Published: over 10 years ago

10.1186/s12864-021-07733-9

Characterization of nucleic acids from extracellular vesicle-enriched human sweat
Cited by: 17
Author(s): Geneviève Bart, Daniel Fischer, Anatoly Samoylenko, Artem Zhyvolozhnyi, Pavlo Stehantsev, Ilkka Miinalainen, Mika Kaakinen, Tuomas Nurmi, Prateek Singh, Susanna Kosamo, Lauri Rannaste, Sirja Viitala, Jussi Hiltunen, Seppo Vainio
Software Mentions: 1
Published: over 5 years ago

10.1111/obr.12961

Core outcome set for behavioural weight management interventions for adults with overweight and obesity: Standardised reporting of lifestyle weight management interventions to aid evaluation (STAR‐LITE)
Cited by: 25
Author(s): Ruth M. Mackenzie, Louisa Ells, Sharon Anne Simpson, Jennifer Logue
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.ppat.1003591

Chikungunya Virus 3′ Untranslated Region: Adaptation to Mosquitoes and a Population Bottleneck as Major Evolutionary Forces
Cited by: 78
Author(s): Rubing Chen, Eryu Wang, Konstantin A. Tsetsarkin, Scott C. Weaver
Software Mentions: 1
Published: about 13 years ago

10.1186/s12864-017-4241-1

ExUTR: a novel pipeline for large-scale prediction of 3′-UTR sequences from NGS data
Cited by: 31
Author(s): Zixia Huang, Emma C. Teeling
Software Mentions: 1
Published: almost 9 years ago

10.1186/s12934-015-0397-z

Reversing methanogenesis to capture methane for liquid biofuel precursors
Cited by: 109
Author(s): Valerie W. C. Soo, Michael J. McAnulty, Arti Tripathi, Fayin Zhu, Limin Zhang, Emmanuel Hatzakis, Philip B. Smith, Saumya Agrawal, Hadi Nazem‐Bokaee, Saratram Gopalakrishnan, Howard M. Salis, James G. Ferry, Costas D. Maranas, Andrew D. Patterson, Thomas K. Wood
Software Mentions: 1
Published: over 10 years ago

10.1186/s13613-021-00807-7

Insulin sensitivity in critically ill patients: are women more insulin resistant?
Cited by: 9
Author(s): Vincent Uyttendaele, J. Geoffrey Chase, Jennifer L. Knopp, Rebecca Gottlieb, Geoffrey M. Shaw, Thomas Desaive
Software Mentions: 1
Published: over 5 years ago

10.7717/peerj.8461

Loss of Schlafen3 influences the expression levels of Schlafen family members in ileum, thymus, and spleen tissue
Cited by: 5
Author(s): Emilie E. Vomhof-DeKrey, Josey Umthun, Marc D. Basson
Software Mentions: 1
Published: over 6 years ago

10.3389/fimmu.2020.575103

Evolutionarily Selected Overexpression of the Cytokine BAFF Enhances Mucosal Immune Response Against P. falciparum
Cited by: 3
Author(s): Valeria Lodde, Matteo Floris, Isabel Beerman, Rachel Munk, Rajan Guha, Maristella Steri, Valeria Orrù, Kotb Abdelmohsen, Peter D. Crompton, Myriam Gorospe, Maria Laura Idda, Francesco Cucca
Software Mentions: 1
Published: almost 6 years ago

10.3389/fimmu.2021.629391

Small Intestinal Tuft Cell Activity Associates With Energy Metabolism in Diet-Induced Obesity
Cited by: 6
Author(s): Pankaj Arora, Daniel S. Andersen, Janne Marie Moll, Niels Banhos Danneskiold‐Samsøe, Liqin Xu, Biaofeng Zhou, Georgios Kladis, Philipp Rausch, Christopher T. Workman, Karsten Kristiansen, Susanne Brix
Software Mentions: 1
Published: over 5 years ago

10.1038/s41398-019-0677-1

A computationally inspired in-vivo approach identifies a link between amygdalar transcriptional heterogeneity, socialization and anxiety
Cited by: 4
Author(s): Aaron Goldman, Joshua L. Smalley, Meeta Mistry, Harald Krenzlin, Hong Zhang, Andrew Dhawan, Barbara J. Caldarone, Stephen J. Moss, David Silbersweig, Sean E. Lawler, Ilana M. Braun
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41398-020-0832-8

Cannabinoid receptor CNR1 expression and DNA methylation in human prefrontal cortex, hippocampus and caudate in brain development and schizophrenia
Cited by: 33
Author(s): Ran Tao, Chao Li, Andrew E. Jaffe, Joo Heon Shin, Amy Deep-Soboslay, Rae’e Yamin, Daniel R. Weinberger, Thomas M. Hyde, Joel E. Kleinman
Software Mentions: 1
Published: over 6 years ago

10.1002/glia.23516

The miRNA biogenesis pathway prevents inappropriate expression of injury response genes in developing and adult Schwann cells
Cited by: 8
Author(s): Deniz Gökbuget, Jorge A. Pereira, Lennart Opitz, Dominik Christe, Tobias Keßler, Antonin Marchais, Ueli Suter
Software Mentions: 1
Published: almost 8 years ago

10.3389/fmicb.2021.613697

Evaluation of Host Immune Response in Diabetic Foot Infection Tissues Using an RNA Sequencing-Based Approach
Cited by: 3
Author(s): Fatemah Sadeghpour Heravi, Martha Zakrzewski, Hamidreza Aboulkheyr Estarabadi, Karen Vickery, Honghua Hu
Software Mentions: 1
Published: over 5 years ago

10.3389/fimmu.2019.01844

Maintenance of Functional CD57+ Cytolytic CD4+ T Cells in HIV+ Elite Controllers
Cited by: 23
Author(s): Chansavath Phetsouphanh, Daniel Aldridge, Emanuele Marchi, C. Mee Ling Munier, Jodi Meyerowitz, Lyle Murray, C.V. van Vuuren, Dominique Goedhals, Sarah Fidler, Anthony D. Kelleher, Paul Klenerman, John Frater
Software Mentions: 1
Published: about 7 years ago

10.3389/fimmu.2020.629726

Proteinase-Mediated Macrophage Signaling in Psoriatic Arthritis
Cited by: 8
Author(s): Fatima Abji, Mozhgan Rasti, Alejandro Gómez‐Aristizábal, Carla Muytjens, Mahmoud Saifeddine, Koichiro Mihara, Majid Motahhari, Rajiv Gandhi, Sowmya Viswanathan, Morley D. Hollenberg, Κατερίνα Οικονομοπούλου, Vinod Chandran
Software Mentions: 1
Published: over 5 years ago

10.1186/s12967-021-03041-8

Platelet transcriptome profiles provide potential therapeutic targets for elderly acute myelocytic leukemia patients
Cited by: 2
Author(s): Bao Ji-zhang, Xinhua Zhao, Jiahui Lü, Zhaoyang Hu, Minghui Hu, Xiaoxia Hu, Libing Wang, Qi Hu, Wei Sun, Jie Wang, Hailin Chen, Hao Lü, Changgui Li, Jianing Xu, Yongming Zhou, Weiliang Zhu
Software Mentions: 1
Published: about 5 years ago

10.1186/s13567-018-0534-x

Exploring the mechanisms of resistance to Teladorsagia circumcincta infection in sheep through transcriptome analysis of abomasal mucosa and abomasal lymph nodes
Cited by: 18
Author(s): P. K. Chitneedi, Aroa Suárez-Vega, María Martínez‐Valladares, Juan José Arranz
Software Mentions: 1
Published: over 8 years ago

10.3389/fimmu.2019.00269

Requirement for Cyclic AMP/Protein Kinase A-Dependent Canonical NFκB Signaling in the Adjuvant Action of Cholera Toxin and Its Non-toxic Derivative mmCT
Cited by: 9
Author(s): Manuela Terrinoni, Jan Holmgren, Michael Lebens, Maximilian Larena
Software Mentions: 1
Published: over 7 years ago

10.1172/jci.insight.149033

Gut germinal center regeneration and enhanced antiviral immunity by mesenchymal stem/stromal cells in SIV infection
Cited by: 7
Author(s): Mariana G. Weber, C. J. Walters, Amir Kol, Clarissa Santos Rocha, Lauren A. Hirao, Abigail L Mende, Bipin Balan, Juan Arredondo, Sonny R. Elizaldi, Smita S. Iyer, Alice F. Tarantal, Satya Dandekar
Software Mentions: 1
Published: about 5 years ago

10.1186/s12967-021-02837-y

The role of transcriptomic biomarkers of endometrial receptivity in personalized embryo transfer for patients with repeated implantation failure
Cited by: 23
Author(s): Anbang He, Yangyun Zou, Cheng Wan, Jing Zhao, Qiong Zhang, Zhongyuan Yao, Tian Fen, Hong Wu, Xi Huang, Jing Fu, Chunxu Hu, Yue Sun, Lanbo Xiao, Tianli Yang, Zhaojuan Hou, Xin Dong, Sijia Lü, Yanping Li
Software Mentions: 1
Published: over 5 years ago

10.1172/jci.insight.146572

The role of Sp140 revealed in IgE and mast cell responses in Collaborative Cross mice
Cited by: 8
Author(s): Kazunobu Matsushita, Xin Li, Yuki Nakamura, Danyue Dong, Kaori Mukai, Mindy Tsai, S Montgomery, Stephen J. Galli
Software Mentions: 1
Published: about 5 years ago

10.7554/eLife.67452

SIRT1 regulates sphingolipid metabolism and neural differentiation of mouse embryonic stem cells through c-Myc-SMPDL3B
Cited by: 16
Author(s): Wei Fan, Shuāng Táng, Xiaojuan Fan, Yi Fang, Xiaojiang Xu, Leping Li, Jian Xu, Jianliang Li, Zefeng Wang, Xiaoling Li
Software Mentions: 1
Published: over 5 years ago

10.7554/eLife.60259

Caenorhabditis elegans methionine/S-adenosylmethionine cycle activity is sensed and adjusted by a nuclear hormone receptor
Cited by: 33
Author(s): Gabrielle E. Giese, Melissa Walker, Olga Ponomarova, Hefei Zhang, Xuhang Li, Gregory Minevich, Albertha J.M. Walhout
Software Mentions: 1
Published: almost 6 years ago

10.1172/jci.insight.146314

TNF blockade uncouples toxicity from antitumor efficacy induced with CD40 chemoimmunotherapy
Cited by: 5
Author(s): Maureen Stone, Vivian Lee, Veronica M. Herrera, Kathleen Graham, Jae Woo Lee, Austin P. Huffman, Heather Coho, Evan Tooker, Max I. Myers, Michael A. Giannone, Yan Li, Thomas H. Buckingham, Kristen B. Long, Gregory L. Beatty
Software Mentions: 1
Published: about 5 years ago

10.1016/j.cell.2018.06.019

A Complete Electron Microscopy Volume of the Brain of Adult Drosophila melanogaster
Cited by: 667
Author(s): Zhihao Zheng, J. Scott Lauritzen, Eric Perlman, Camenzind G. Robinson, Matthew Nichols, Daniel E. Milkie, Omar Torrens, J. W. Price, Corey B. Fisher, Nadiya Sharifi, Steven A. Calle-Schuler, Lucia Kmecova, Iqbal J. Ali, Bill Karsh, Eric T. Trautman, John A. Bogovic, Philipp Hanslovsky, Gregory Jefferis, Michael Kazhdan, Khaled Khairy, Stephan Saalfeld, Richard D. Fetter, Davi D. Bock
Software Mentions: 1
Published: about 8 years ago

10.3390/v8010010

Direct Identification of Enteroviruses in Cerebrospinal Fluid of Patients with Suspected Meningitis by Nested PCR Amplification
Cited by: 14
Author(s): Alexandr Krasota, Natalia Loginovskih, Olga E. Ivanova, Galina Lipskaya
Software Mentions: 1
Published: over 10 years ago

10.1172/jci.insight.148147

Type II alveolar epithelial cell–specific loss of RhoA exacerbates allergic airway inflammation through SLC26A4
Cited by: 4
Author(s): C. Danh, Yan Zhang, Wei Tu, Xinyue Hu, Xiaojun Xiao, Jingsi Chen, Haiping Hao, Zhigang Liu, Jing Li, Shau Ku Huang, Mei Wan, Peisong Gao
Software Mentions: 1
Published: about 5 years ago

10.3389/fimmu.2020.584310

Lung Secretoglobin Scgb1a1 Influences Alveolar Macrophage-Mediated Inflammation and Immunity
Cited by: 23
Author(s): Min Xu, Wei Yang, Xuanchuan Wang, D. K. Nayak
Software Mentions: 1
Published: almost 6 years ago

10.3389/fmicb.2019.02168

Global Analysis of Cell Wall Genes Revealed Putative Virulence Factors in the Dermatophyte Trichophyton rubrum
Cited by: 15
Author(s): Maíra Pompeu Martins, Larissa Gomes Silva, Antônio Rossi, Pablo Rodrigo Sanches, Larissa Daniela Ribeiro de Souza, Nilce Maria Martinez-Rossi
Software Mentions: 1
Published: almost 7 years ago

10.1080/16549716.2019.1664103

The logic model for Uganda’s health sector preparedness for public health threats and emergencies
Cited by: 12
Author(s): Alex Riolexus Ario, Issa Makumbi, Lilian Bulage, Simon Kyazze, Joshua Kayiwa, Milton Wetaka, Juliet N. Kasule, Felix Ocom
Software Mentions: 1
Published: over 7 years ago

10.3389/fimmu.2018.00184

Identification of Casz1 as a Regulatory Protein Controlling T Helper Cell Differentiation, Inflammation, and Immunity
Cited by: 17
Author(s): Natarajan Bhaskaran, Zhihui Liu, Senthil S. Saravanamuthu, Chunhua Yan, Ying Hu, Lijin Dong, Peggy S. Zelenka, Lixin Zheng, Vassili Bletsos, Rachel Harris, Brenna Harrington, Aaron Weinberg, Carol J. Thiele, Fengchun Ye, Pushpa Pandiyan
Software Mentions: 1
Published: over 8 years ago

10.7717/peerj.3548

Early-branching euteleost relationships: areas of congruence between concatenation and coalescent model inferences
Cited by: 9
Author(s): Matthew A. Campbell, Michael E. Alfaro, Max Belasco, J. Andrés López
Software Mentions: 1
Published: about 9 years ago

10.1200/PO.18.00297

Crizotinib and Surgery for Long-Term Disease Control in Children and Adolescents With ALK-Positive Inflammatory Myofibroblastic Tumors
Cited by: 21
Author(s): Toby N. Trahair, Andrew J. Gifford, Ashleigh M. Fordham, Chelsea Mayoh, Mitali Fadia, Robyn Lukeis, Andrew C. Wood, Santosh Valvi, Rodney A. Walker, James Blackburn, Erin E. Heyer, Tim R. Mercer, Draga Barbaric, Glenn M. Marshall, Karen L. MacKenzie
Software Mentions: 1
Published: almost 7 years ago

10.1200/PO.18.00105

Personalized Clinical Decision Making Through Implementation of a Molecular Tumor Board: A German Single-Center Experience
Cited by: 30
Author(s): Rouven Hoefflin, Anna-Lena Geißler, Ralph Fritsch, Rainer Claus, Julius Wehrle, Patrick Bastos Metzger, Meike Reiser, Leman Mehmed, Lisa Fauth, Dieter Henrik Heiland, Thalia Erbes, Friedrich Stock, Ágnes Csanádi, Cornelius Miething, Britta Weddeling, Frank Meiß, Dagmar von Bubnoff, Christine Dierks, Isabell Ge, Volker Brass, Steffen Heeg, Henning Schäfer, Martin Boeker, Justyna Rawluk, Elke Botzenhart, Gian Kayser, Simone Hettmer, Hauke Busch, Christoph Peters, Martin Werner, Justus Duyster, Tilman Brummer, Melanie Boerries, Silke Laßmann, Nikolas von Bubnoff
Software Mentions: 1
Published: almost 8 years ago

10.1016/j.jacc.2021.07.018

Innate Lymphoid Cells Promote Recovery of Ventricular Function After Myocardial Infarction
Cited by: 24
Author(s): Yu Lei, Stephen A. Newland, Tian Zhao, Yuning Lu, Andrew S. Sage, Yanqing Sun, Rouchelle Sriranjan, Marcella K.L., Brian Lam, Meritxell Nus, James Harrison, Simon Bond, Xiang Cheng, Jean‐Sébastien Silvestre, James H.F. Rudd, Joseph Cheriyan, Ziad Mallat
Software Mentions: 1
Published: about 5 years ago

10.1186/s40104-018-0288-3

Identification and characterization of long non-coding RNAs in porcine granulosa cells exposed to 2,3,7,8-tetrachlorodibenzo-p-dioxin
Cited by: 16
Author(s): Monika Ruszkowska, Anna Nynca, Łukasz Paukszto, Agnieszka Sadowska, Sylwia Świgońska, Karina Orlowska, Tomasz Molcan, J Jastrzebski, Renata E. Ciereszko
Software Mentions: 1
Published: almost 8 years ago

10.1186/s40104-019-0331-z

Genome-wide profiling of RNA editing sites in sheep
Cited by: 10
Author(s): Yuanyuan Zhang, Deguo Han, Xianggui Dong, Jiankui Wang, Jianfei Chen, Yanzhu Yao, Hesham Y. A. Darwish, Wansheng Liu, Xuemei Deng
Software Mentions: 1
Published: over 7 years ago

10.3389/fimmu.2021.672498

Integrated Analysis of Omics Data Reveal AP-1 as a Potential Regulation Hub in the Inflammation-Induced Hyperalgesia Rat Model
Cited by: 0
Author(s): Xiaohui Zhu, Feng Li, Miqun Wang, Huibin Su, Xuedong Wu, Haiyan Qiu, Zhou Wang, Chunli Shan, Cancan Wang, Lei Wei
Software Mentions: 1
Published: over 5 years ago

10.1186/s40104-020-00448-z

Effect of dietary supplementation with yeast cell wall extracts on performance and gut response in broiler chickens
Cited by: 19
Author(s): A. Pascual, Marianna Pauletto, Mery Giantin, Giuseppe Radaelli, Cristina Ballarin, Marco Birolo, C. Zomeño, Mauro Dacasto, Martina Bortoletti, Marta Vascellari, Gerolamo Xiccato, A. Trocino
Software Mentions: 1
Published: over 6 years ago

10.7554/eLife.27891

ME31B globally represses maternal mRNAs by two distinct mechanisms during the Drosophila maternal-to-zygotic transition
Cited by: 51
Author(s): Miranda Wang, Michael Ly, Andrew Lugowski, John Laver, Howard D. Lipshitz, Craig Smibert, Olivia S. Rissland
Software Mentions: 1
Published: about 9 years ago

10.7717/peerj.10794

Transcriptomic analysis of nonylphenol effect on Saccharomyces cerevisiae
Cited by: 0
Author(s): Ceyhun Bereketoğlu, Gozde Nacar, Tuğba Sari, Bülent Mertoğlu, Ajay Pradhan
Software Mentions: 1
Published: over 5 years ago

10.1186/1745-6215-13-19

Assertive Community Treatment for alcohol dependence (ACTAD): study protocol for a randomised controlled trial
Cited by: 11
Author(s): Helen Gilburt, Tom Burns, Alex Copello, Simon Coulton, Mike Crawford, Ed Day, Paolo Deluca, Christine Godfrey, Steve Parrott, Abigail K. Rose, Julia Sinclair, Christine Wright, Colin Drummond
Software Mentions: 1
Published: over 14 years ago

10.3390/vaccines9070800

Mutation E48K in PB1 Polymerase Subunit Improves Stability of a Candidate Live Attenuated Influenza B Virus Vaccine
Cited by: 3
Author(s): Jong-Suk Mo, Stivalis Cárdenas-García, Jefferson Santos, Lucas Ferreri, C. Joaquín Cáceres, Ginger Geiger, Daniel R. Pérez, Daniela S. Rajão
Software Mentions: 1
Published: about 5 years ago

10.1038/srep22177

Evolution of the assassin’s arms: insights from a phylogeny of combined transcriptomic and ribosomal DNA data (Heteroptera: Reduvioidea)
Cited by: 33
Author(s): Junxia Zhang, Eric R. L. Gordon, Michael Forthman, Wei Song Hwang, Kimberly K. O. Walden, Daniel R. Swanson, Kevin P. Johnson, Rudolf Meier, Christiane Weirauch
Software Mentions: 1
Published: over 10 years ago

10.7717/peerj.5759

Sequence variant analysis of RNA sequences in severe equine asthma
Cited by: 8
Author(s): Laurence Tessier, Olivier Côté, Dorothee Bienzle
Software Mentions: 1
Published: almost 8 years ago

10.1186/1745-6215-15-101

The effectiveness and cost-effectiveness of lay counsellor-delivered psychological treatments for harmful and dependent drinking and moderate to severe depression in primary care in India: PREMIUM study protocol for randomized controlled trials
Cited by: 55
Author(s): Vikram Patel, Benedict Weobong, Abhijit Nadkarni, Helen A. Weiss, Arpita Anand, Smita Naik, Bhargav Bhat, Jesina Pereira, Ricardo Araya, Sona Dimidjian, Steven D. Hollon, Michael King, Jim McCambridge, David McDaid, Pratima Murthy, Richard Velleman, Christopher G. Fairburn, Betty Kirkwood
Software Mentions: 1
Published: over 12 years ago

10.1038/srep26200

Possible mechanisms of host resistance to Haemonchus contortus infection in sheep breeds native to the Canary Islands
Cited by: 57
Author(s): Zhengyu Guo, J. González, Julia N. Hernández, Tom N. McNeilly, Yolanda Corripio-Miyar, David Frew, Tyler Morrison, Peng Yu, Robert W. Li
Software Mentions: 1
Published: over 10 years ago

10.1186/s13063-015-0768-0

The NAtional randomised controlled Trial of Tonsillectomy IN Adults (NATTINA): a clinical and cost-effectiveness study: study protocol for a randomised control trial
Cited by: 14
Author(s): Isabel Rubie, Catherine Haighton, James O’Hara, Nikki Rousseau, Nick Steen, Deborah Stocken, Frank Sullivan, Luke Vale, Scott Wilkes, Janet A. Wilson
Software Mentions: 1
Published: over 11 years ago

10.1038/srep30311

Transcriptome sequencing wide functional analysis of human mesenchymal stem cells in response to TLR4 ligand
Cited by: 26
Author(s): Sun Hwa Kim, Amitabh Das, Jin Choul Chai, Bert Binas, Mi Ran Choi, Kyoung Sun Park, Young Seek Lee, Kyoung Hwa Jung, Young Gyu Chai
Software Mentions: 1
Published: about 10 years ago

10.1186/s13063-015-1063-9

The effectiveness and cost-effectiveness of the peer-delivered Thinking Healthy Programme for perinatal depression in Pakistan and India: the SHARE study protocol for randomised controlled trials
Cited by: 62
Author(s): Siham Sikander, Anisha Lazarus, Omer Bangash, Daniela C. Fuhr, Benedict Weobong, Revathi N. Krishna, Irshad Ahmad, Helen A. Weiss, LeShawndra N. Price, Atıf Rahman, Vikram Patel
Software Mentions: 1
Published: almost 11 years ago

10.1038/srep33209

STAR: a simple TAL effector assembly reaction using isothermal assembly
Cited by: 13
Author(s): Sabine Gogolok, Claudia Garcia-Diaz, Steven M. Pollard
Software Mentions: 1
Published: about 10 years ago

10.7554/eLife.64094

Correction: Nitric oxide acts as a cotransmitter in a subset of dopaminergic neurons to diversify memory dynamics
Cited by: 0
Author(s): Yoshinori Asou, Robert P. Ray, Xi Long, Daniel Bushey, Karol Cichewicz, Teri-TB Ngo, Brandi Sharp, Christina Christoforou, Amy Hu, Andrew Lemire, Paul W Tillberg, Jay Hirsh, Ashok Litwin-Kumar, Gerald M. Rubin
Software Mentions: 1
Published: almost 6 years ago

10.1186/s13063-017-2391-8

Development of a complex intervention for people with chronic pain after knee replacement: the STAR care pathway
Cited by: 12
Author(s): Vikki Wylde, Nick Howells, Wendy Bertram, Andrew Moore, Julie Bruce, Candy McCabe, Ashley W Blom, Jane A Dennis, Amanda Burston, Rachael Gooberman‐Hill
Software Mentions: 1
Published: over 8 years ago

10.1038/srep34863

Systems-level analysis reveals selective regulation of Aqp2 gene expression by vasopressin
Cited by: 35
Author(s): Pablo Sandoval, J’Neka S. Claxton, Jae Woo Lee, Fahad Saeed, Jason D. Hoffert, Mark A. Knepper
Software Mentions: 1
Published: almost 10 years ago

10.1038/srep35228

Interactome-transcriptome analysis discovers signatures complementary to GWAS Loci of Type 2 Diabetes
Cited by: 17
Author(s): Jing‐Woei Li, Heung‐Man Lee, Ying Wang, Amy Hin-Yan Tong, Kevin Y. Yip, Stephen Kwok‐Wing Tsui, Si Lok, Risa Ozaki, Andrea O. Y. Luk, Alice Pik‐Shan Kong, Wing–Yee So, C. Ronald, Juliana C.N. Chan, Ting-Fung Chan
Software Mentions: 1
Published: almost 10 years ago

10.7554/eLife.42424

Different genetic mechanisms mediate spontaneous versus UVR-induced malignant melanoma
Cited by: 19
Author(s): Blake Ferguson, Herlina Y. Handoko, Pamela Mukhopadhyay, Arash Chitsazan, Lois Balmer, Grant Morahan, Graeme J. Walker
Software Mentions: 1
Published: over 7 years ago

10.1186/s13063-019-3296-5

Optimising recruitment into trials using an internal pilot
Cited by: 7
Author(s): Wendy Bertram, Andrew Moore, Vikki Wylde, Rachael Gooberman-Hill
Software Mentions: 1
Published: over 7 years ago

10.1111/pbi.13600

The pan‐genome of the cultivated soybean (PanSoy) reveals an extraordinarily conserved gene content
Cited by: 36
Author(s): Davoud Torkamaneh, Marc‐André Lemay, François Belzile
Software Mentions: 1
Published: over 5 years ago

10.1038/srep37235

Nitrogen-induced metabolic changes and molecular determinants of carbon allocation in Dunaliella tertiolecta
Cited by: 49
Author(s): Kenneth Wei Min Tan, Huixin Lin, Hui Shen, Yuan Kun Lee
Software Mentions: 1
Published: almost 10 years ago

10.1186/s13063-019-3573-3

The effectiveness of a low-intensity problem-solving intervention for common adolescent mental health problems in New Delhi, India: protocol for a school-based, individually randomized controlled trial with an embedded stepped-wedge, cluster randomized controlled recruitment trial
Cited by: 13
Author(s): Rachana Parikh, Daniel Michelson, Kanika Malik, Sachin Shinde, Helen A. Weiss, Adriaan W. Hoogendoorn, Jeroen Ruwaard, Madhuri Krishna, Rhea Sharma, Bhargav Bhat, Rooplata Sahu, Sonal Mathur, Paulomi M. Sudhir, Michael King, Pim Cuijpers, Bruce F. Chorpita, Christopher G. Fairburn, Vikram Patel
Software Mentions: 1
Published: about 7 years ago

10.1038/srep37412

Gene regulatory networks in neural cell fate acquisition from genome-wide chromatin association of Geminin and Zic1
Cited by: 20
Author(s): Savita Sankar, Dhananjay Yellajoshyula, Bo Zhang, Bryan W. Teets, Nicole B. Rockweiler, Kristen L. Kroll
Software Mentions: 1
Published: almost 10 years ago

10.3389/fimmu.2018.02138

Functional Inhibitory Siglec-6 Is Upregulated in Human Colorectal Cancer-Associated Mast Cells
Cited by: 33
Author(s): Yingxin Yu, Bart R. Blokhuis, Mara A P Diks, Ali Keshavarzian, Johan Garssen, Frank A. Redegeld
Software Mentions: 1
Published: almost 8 years ago

10.1038/srep38624

Genome maintenance and bioenergetics of the long-lived hypoxia-tolerant and cancer-resistant blind mole rat, Spalax: a cross-species analysis of brain transcriptome
Cited by: 25
Author(s): Assaf Malik, Vered Domankevich, Lijuan Han, Xiaodong Fang, Abraham B. Korol, Aaron Avivi, Imad Shams
Software Mentions: 1
Published: almost 10 years ago

10.1038/srep39094

Targeted RNA-Seq profiling of splicing pattern in the DMD gene: exons are mostly constitutively spliced in human skeletal muscle
Cited by: 21
Author(s): Anne-Laure Bougé, Eva M. Murauer, Emmanuelle Beyne, Julie Miro, Jessica Varilh, Magali Taulan, M. Kœnig, Mireille Claustres, Sylvie Tuffery‐Giraud
Software Mentions: 1
Published: over 9 years ago

10.1038/srep40214

Aminophylline suppresses stress-induced visceral hypersensitivity and defecation in irritable bowel syndrome
Cited by: 16
Author(s): Teita Asano, Ken Ichiro Tanaka, Arisa Tada, Hikaru Shimamura, Rikako Tanaka, Hiroki Maruoka, Mitsuko Takenaga, Tohru Mizushima
Software Mentions: 1
Published: over 9 years ago

10.1186/s13063-019-3792-7

Structured, proactive care coordination versus usual care for Improving Morbidity during Post-Acute Care Transitions for Sepsis (IMPACTS): a pragmatic, randomized controlled trial
Cited by: 18
Author(s): Marc Kowalkowski, Shih-Hsiung Chou, Andrew McWilliams, Cathryn Lashley, Stephanie Murphy, Whitney Rossman, Alfred Papali, Alan C. Heffner, Mark J. Russo, Larry Burke, Michael Gibbs, Stephanie Parks Taylor
Software Mentions: 1
Published: almost 7 years ago

10.7554/eLife.37527

Species-specific maturation profiles of human, chimpanzee and bonobo neural cells
Cited by: 84
Author(s): Maria C. Marchetto, Branka Hrvoj-Mihić, Bilal E. Kerman, Diana Yu, Krishna C. Vadodaria, Sara B. Linker, Iñigo Narvaiza, Renata Santos, Ahmet M. Denli, Ana Cristina Mendes, Ruth Oefner, Jonathan Cook, Lauren McHenry, Jaeson Michael Grasmick, Kelly J. Heard, Callie Fredlender, Lynne Randolph‐Moore, Rijul S. Kshirsagar, Rea Xenitopoulos, Grace Chou, Nasun Hah, Alysson R. Muotri, Krishnan Padmanabhan, Katerina Semendeferi, Fred H. Gage
Software Mentions: 1
Published: over 7 years ago

10.1002/cjp2.158

<i>NTRK</i> fusions in osteosarcoma are rare and non‐functional events
Cited by: 15
Author(s): Baptiste Ameline, Karim H. Saba, Michal Kováč, Linda Magnusson, Olaf Witt, Stefan Bielack, Michaela Nathrath, Karolin Hansén Nord, Daniel Baumhoer
Software Mentions: 1
Published: over 6 years ago

10.1186/s13063-020-04255-9

Cost-utility analysis of curative and maintenance repetitive transcranial magnetic stimulation (rTMS) for treatment-resistant unipolar depression: a randomized controlled trial protocol
Cited by: 4
Author(s): Samuel Bulteau, Alexandre Laurin, Christelle Volteau, Cécile Dert, Lydie Lagalice, Solène Schirr-Bonnans, Nicolas Bukowski, Marie Guitteny, Luc Simons, Clémence Cabelguen, Anne Pichot, Fabienne Tessier, Annabelle Bonnin, Adeline Lepage, Jean-Marie Vanelle, Anne Sauvaget, Valéry-Pierre Riche
Software Mentions: 1
Published: over 6 years ago

10.1534/g3.120.401151

Long-Read Genome Sequencing and Assembly of Leptopilina boulardi: A Specialist Drosophila Parasitoid
Cited by: 2
Author(s): Shagufta Khan, Divya Tej Sowpati, Arumugam Srinivasan, Mamilla Soujanya, Rakesh K. Mishra
Software Mentions: 1
Published: over 6 years ago

10.1186/s40814-017-0182-3

Pilot parallel randomised controlled trial of protective socks against usual care to reduce skin tears in high risk people: ‘STOPCUTS’
Cited by: 4
Author(s): Roy Powell, Christopher Hayward, Caroline L. Snelgrove, Kathleen Polverino, Linda Park, Rajeev Kumar Chauhan, Philip Evans, Rachel Byford, Carolyn Charman, Christopher Foy, Colin Pritchard, Andrew Kingsley
Software Mentions: 1
Published: almost 9 years ago

10.1038/srep43745

Dietary restriction protects against diethylnitrosamine-induced hepatocellular tumorigenesis by restoring the disturbed gene expression profile
Cited by: 16
Author(s): Ting Duan, Wenjie Sun, Mohan Zhang, Juan Ge, Yansu He, Jun Zhang, Yifan Zheng, Wei Yang, Han‐Ming Shen, Jun Yang, Xinqiang Zhu, Peilin Yu
Software Mentions: 1
Published: over 9 years ago

10.7554/eLife.36861

Characterisation of molecular motions in cryo-EM single-particle data by multi-body refinement in RELION
Cited by: 418
Author(s): Takanori Nakane, Dari Kimanius, Erik Lindahl, Sjors H.W. Scheres
Software Mentions: 1
Published: over 8 years ago

10.3389/fimmu.2018.02982

HMGN1 and R848 Synergistically Activate Dendritic Cells Using Multiple Signaling Pathways
Cited by: 25
Author(s): Masud Alam, De Yang, Anna Trivett, Thomas J. Meyer, Joost J. Oppenheim
Software Mentions: 1
Published: almost 8 years ago

10.1186/s12967-018-1495-6

Limited utility of tissue micro-arrays in detecting intra-tumoral heterogeneity in stem cell characteristics and tumor progression markers in breast cancer
Cited by: 14
Author(s): Pascale Kündig, Charlotte Giesen, Hartland W. Jackson, Bernd Bodenmiller, Bärbel Papassotirolopus, Sandra N. Freiberger, Catharine Aquino, Lennart Opitz, Zsuzsanna Varga
Software Mentions: 1
Published: over 8 years ago

10.1534/g3.120.401371

The Genome Sequence of the Octocoral <i>Paramuricea clavata</i> – A Key Resource To Study the Impact of Climate Change in the Mediterranean
Cited by: 2
Author(s): J. B. Ledoux, Fernando Cruz, Jèssica Gómez-Garrido, Regina Antoni, Julie Blanc, Daniel Gómez‐Gras, Silvija Kipson, Paula López‐Sendino, Agostinho Antunes, Cristina Linares, Marta Gut, Tyler Alioto, Joaquim Garrabou
Software Mentions: 1
Published: about 6 years ago

10.1038/srep46440

LPS independent activation of the pro-inflammatory receptor Trem1 by C/EBPε in granulocytes
Cited by: 8
Author(s): Hyung Chan Suh, Touati Benoukraf, S. Pavithra, Tong Yin, Qi Cao, Jonathan Said, Stephen Lee, Raymond Boon Tar Lim, Henry Yang, Jacqueline Salotti, Peter F. Johnson, Vikas Madan, H. Phillip Koeffler
Software Mentions: 1
Published: over 9 years ago

10.1101/2021.02.17.431704

Host-virus chimeric events in SARS-CoV2 infected cells are infrequent and artifactual
Cited by: 3
Author(s): Bingyu Yan, Srishti Chakravorty, Carmen Mirabelli, Luopin Wang, Jorge L Trujillo-Ochoa, Daniel Chauss, Dhaneshwar Kumar, Michail S Lionakis, Matthew R. Olson, Christiane E. Wobus, Behdad Afzali, Majid Kazemian
Software Mentions: 1
Published: over 5 years ago

10.1534/g3.120.401117

Behavioral and Transcriptional Response to Selection for Olfactory Behavior in<i>Drosophila</i>
Cited by: 4
Author(s): Elizabeth Brown, John E. Layne, Alexandra R Elchert, Stephanie M. Rollmann
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-017-00575-0

Eμ and 3′RR IgH enhancers show hierarchic unilateral dependence in mature B-cells
Cited by: 17
Author(s): Alexis Saintamand, Christelle Vincent-Fabert, Marie Marquet, Nour Ghazzaui, Virginie Magnone, Eric Pinaud, Michel Cogné, Yves Denizot
Software Mentions: 1
Published: over 9 years ago

10.1534/g3.119.400529

The <i>de Novo</i> Reference Genome and Transcriptome Assemblies of the Wild Tomato Species <i>Solanum chilense</i> Highlights Birth and Death of NLR Genes Between Tomato Species
Cited by: 32
Author(s): Remco Stam, Tetyana Nosenko, Anja C. Hörger, Wolfgang Stephan, Michael Seidel, José Manuel Monroy Kuhn, Georg Haberer, Aurélien Tellier
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-017-00801-9

Frequent GU wobble pairings reduce translation efficiency in Plasmodium falciparum
Cited by: 13
Author(s): Sherwin Chan, Jun-Hong Ch’ng, Mats Wahlgren, Jessada Thutkawkorapin
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-017-01165-w

Low-cost, Low-bias and Low-input RNA-seq with High Experimental Verifiability based on Semiconductor Sequencing
Cited by: 7
Author(s): Zhibiao Mai, Chuan-Le Xiao, Jingjie Jin, Gong Zhang
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-017-01377-0

Transcriptomic response of durum wheat to nitrogen starvation
Cited by: 103
Author(s): Pasquale Luca Curci, Riccardo Aiese Cigliano, Diana L. Zuluaga, Michela Janni, Walter Sanseverino, Gabriella Sonnante
Software Mentions: 1
Published: over 9 years ago

10.1128/mBio.00778-17

Endoplasmic Reticulum Stress Caused by Lipoprotein Accumulation Suppresses Immunity against Bacterial Pathogens and Contributes to Immunosenescence
Cited by: 31
Author(s): Jogender Singh, Alejandro Aballay
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-017-02520-7

Tropospheric Warming Over The Past Two Decades
Cited by: 20
Author(s): Benjamin D. Santer, Susan Solomon, F. J. Wentz, Qiang Fu, Stephen Po‐Chedley, C. A. Mears, Jeffrey F. Painter, C. Bonfils
Software Mentions: 1
Published: over 9 years ago

10.1534/g3.119.400643

Updated Genome Assembly and Annotation for Metrosideros polymorpha, an Emerging Model Tree Species of Ecological Divergence
Cited by: 3
Author(s): Ayako Izuno, Thomas Wicker, Masaomi Hatakeyama, Dario Copetti, Kentaro Shimizu
Software Mentions: 1
Published: almost 7 years ago

10.1016/j.cell.2019.10.015

Long-Term Culture Captures Injury-Repair Cycles of Colonic Stem Cells
Cited by: 127
Author(s): Yi Wang, I-Ling Chiang, Thomas O’Hara, Satoru Fujii, Jiye Cheng, Brian D. Muegge, Aaron M. Ver Heul, Nathan D. Han, Qiuhe Lu, Sidong Xiong, Feidi Chen, Chin‐Wen Lai, Hana Jáňová, Renee Wu, Charles E. Whitehurst, Kelli L. VanDussen, Ta‐Chiang Liu, Jeffrey I. Gordon, L. David Sibley, Thaddeus S. Stappenbeck
Software Mentions: 1
Published: almost 7 years ago

10.3389/fimmu.2019.00400

Blimp-1 Rather Than Hobit Drives the Formation of Tissue-Resident Memory CD8+ T Cells in the Lungs
Cited by: 70
Author(s): Felix M. Behr, Natasja A. M. Kragten, Thomas H. Wesselink, Benjamin Nota, René A. W. van Lier, Derk Amsen, Regina Stark, Pleun Hombrink, Klaas P.J.M. van Gisbergen
Software Mentions: 1
Published: over 7 years ago

10.18632/oncotarget.22165

Super enhancer associated <i>RAI14</i> is a new potential biomarker in lung adenocarcinoma
Cited by: 14
Author(s): Chongze Yuan, Hong Hu, Muyu Kuang, Zongwei Chen, Xiaoting Tao, Shengjian Fang, Yihua Sun, Yawei Zhang, Hai Quan Chen
Software Mentions: 1
Published: almost 9 years ago

10.3389/fimmu.2019.02791

Adenovirus VA RNAI Blocks ASC Oligomerization and Inhibits NLRP3 Inflammasome Activation
Cited by: 22
Author(s): Mahmoud Darweesh, Wael Kamel, Mikhail A. Gavrilin, Göran Akusjärvi, Christina Svensson
Software Mentions: 1
Published: almost 7 years ago

10.1186/s12967-020-02371-3

Decidual CD8+T cells exhibit both residency and tolerance signatures modulated by decidual stromal cells
Cited by: 18
Author(s): Lu Liu, Xixi Huang, Chunfang Xu, Chunqin Chen, Weijie Zhao, Da‐Jin Li, Liping Li, Li Wang, Meirong Du
Software Mentions: 1
Published: over 6 years ago