cran: STAR | Projects | Ecosyste.ms: Papers

10.1038/srep22177

Evolution of the assassin’s arms: insights from a phylogeny of combined transcriptomic and ribosomal DNA data (Heteroptera: Reduvioidea)
Cited by: 33
Author(s): Junxia Zhang, Eric R. L. Gordon, Michael Forthman, Wei Song Hwang, Kimberly K. O. Walden, Daniel R. Swanson, Kevin P. Johnson, Rudolf Meier, Christiane Weirauch
Software Mentions: 1
Published: over 8 years ago

10.3389/fcvm.2020.565471

Case Report: A Case Report of Stereotactic Ventricular Arrhythmia Radioablation (STAR) on Large Cardiac Target Volume by Highly Personalized Inter- and Intra-fractional Image Guidance
Cited by: 4
Author(s): Maria Lucia Narducci, Francesco Cellini, L. Placidi, Luca Boldrini, Francesco Perna, Gianluigi Bencardino, Gaetano Pinnacchio, R Bertolini, G Cannelli, V. Frascino, Luca Tagliaferri, S. Chiesa, Gian Carlo Mattiucci, Mario Boccadoro, Maria Antonietta Gambacorta, Marco Rossi, Luca Indovina, Gemma Pelargonio, Vincenzo Valentini, Filippo Crea
Software Mentions: 1
Published: about 4 years ago

10.3390/ijms22126478

Differential Regulation of Gonadotropins as Revealed by Transcriptomes of Distinct LH and FSH Cells of Fish Pituitary
Cited by: 15
Author(s): Lian Hollander-Cohen, Matan Golan, Berta Levavi‐Sivan
Software Mentions: 1
Published: over 3 years ago

10.1038/srep26200

Possible mechanisms of host resistance to Haemonchus contortus infection in sheep breeds native to the Canary Islands
Cited by: 57
Author(s): Zhengyu Guo, J. González, Julia N. Hernández, Tom N. McNeilly, Yolanda Corripio-Miyar, David Frew, Tyler Morrison, Peng Yu, Robert W. Li
Software Mentions: 1
Published: over 8 years ago

10.3389/fcvm.2021.689318

Diabetes Promotes Retinal Vascular Endothelial Cell Injury by Inducing CCN1 Expression
Cited by: 8
Author(s): Haicheng Li, Ting Li, Heting Wang, Xianghui He, Ying Li, Siying Wen, Rongdong Peng, Yuanpeng Nie, Yan Lu, Yang He, Yinong Ye, Guojun Shi, Yanming Chen
Software Mentions: 1
Published: over 3 years ago

10.1038/srep30311

Transcriptome sequencing wide functional analysis of human mesenchymal stem cells in response to TLR4 ligand
Cited by: 26
Author(s): Sun Hwa Kim, Amitabh Das, Jin Choul Chai, Bert Binas, Mi Ran Choi, Kyoung Sun Park, Young Seek Lee, Kyoung Hwa Jung, Young Gyu Chai
Software Mentions: 1
Published: over 8 years ago

10.3390/ani11092706

Ad Libitum Feeding in Broiler Breeder Hens Alters the Transcriptome of Granulosa Cells of Pre-Hierarchal Follicles
Cited by: 4
Author(s): Laurie Francoeur, Claire Stephens, Patricia A. Johnson
Software Mentions: 1
Published: about 3 years ago

10.1038/srep33209

STAR: a simple TAL effector assembly reaction using isothermal assembly
Cited by: 13
Author(s): Sabine Gogolok, Claudia Garcia-Diaz, Steven M. Pollard
Software Mentions: 1
Published: about 8 years ago

10.3389/fbioe.2020.595552

Multi-Omics Analysis of the Effect of cAMP on Actinorhodin Production in Streptomyces coelicolor
Cited by: 6
Author(s): Katsuaki Nitta, Francesco Del Carratore, Rainer Breitling, Eriko Takano, Sastia Prama Putri, Eiichiro Fukusaki
Software Mentions: 1
Published: about 4 years ago

10.1186/s12864-018-4456-9

Ouroboros resembling competitive endogenous loop (ORCEL) in circular RNAs revealed through transcriptome sequencing dataset analysis
Cited by: 4
Author(s): Yu-Chen Liu, Hsiao Chin Hong, Chi Yang, Wei Hsiang Lee, Hsin Tzu Huang, Hsien-Da Huang
Software Mentions: 1
Published: over 6 years ago

10.1038/srep34863

Systems-level analysis reveals selective regulation of Aqp2 gene expression by vasopressin
Cited by: 35
Author(s): Pablo Sandoval, J’Neka S. Claxton, Jae Woo Lee, Fahad Saeed, Jason D. Hoffert, Mark A. Knepper
Software Mentions: 1
Published: about 8 years ago

10.1038/srep35228

Interactome-transcriptome analysis discovers signatures complementary to GWAS Loci of Type 2 Diabetes
Cited by: 17
Author(s): Jing‐Woei Li, Heung‐Man Lee, Ying Wang, Amy Hin-Yan Tong, Kevin Y. Yip, Stephen Kwok‐Wing Tsui, Si Lok, Risa Ozaki, Andrea O. Y. Luk, Alice Pik‐Shan Kong, Wing–Yee So, C. Ronald, Juliana C.N. Chan, Ting-Fung Chan
Software Mentions: 1
Published: about 8 years ago

10.1002/fsn3.1002

Nutritional potential of wild sorghum: Grain quality of Sudanese wild sorghum genotypes ( Sorghum bicolor L. Moench)
Cited by: 19
Author(s): Tilal Sayed Abdelhalim, Nasrein Mohamed Kamal, Amro B. Hassan
Software Mentions: 1
Published: over 5 years ago

10.15252/emmm.202012063

Trans‐generational epigenetic regulation associated with the amelioration of Duchenne Muscular Dystrophy
Cited by: 8
Author(s): Julie Martone, Michela Lisi, Francesco Castagnetti, Alessandro Rosa, V. Di Carlo, Enrique Blanco, Adriano Setti, Davide Mariani, Alessio Colantoni, Tiziana Santini, Lucia Perone, Luciano Di Croce, Irene Bozzoni
Software Mentions: 1
Published: over 4 years ago

10.15252/embj.2020106449

Yeast translation elongation factor eEF3 promotes late stages of tRNA translocation
Cited by: 16
Author(s): Namit Ranjan, Agnieszka A. Pochopien, Colin Chih-Chien Wu, Bertrand Beckert, Sophie Blanchet, Rachel Green, Marina V. Rodnina, Daniel N. Wilson
Software Mentions: 1
Published: almost 4 years ago

10.1038/srep37235

Nitrogen-induced metabolic changes and molecular determinants of carbon allocation in Dunaliella tertiolecta
Cited by: 49
Author(s): Kenneth Wei Min Tan, Huixin Lin, Hui Shen, Yuan Kun Lee
Software Mentions: 1
Published: about 8 years ago

10.1186/s12864-015-1415-6

Natural variation of gene models in Drosophila melanogaster
Cited by: 8
Author(s): Yerbol Z. Kurmangaliyev, Alexander V. Favorov, Noha Mohamed Osman, Kjong-Van Lehmann, Daniel Campo, Matthew P. Salomon, John Tower, Mikhail S. Gelfand, Sergey V. Nuzhdin
Software Mentions: 1
Published: over 9 years ago

10.1038/srep37412

Gene regulatory networks in neural cell fate acquisition from genome-wide chromatin association of Geminin and Zic1
Cited by: 20
Author(s): Savita Sankar, Dhananjay Yellajoshyula, Bo Zhang, Bryan W. Teets, Nicole B. Rockweiler, Kristen L. Kroll
Software Mentions: 1
Published: almost 8 years ago

10.15252/embj.201798357

Cancer cells copy migratory behavior and exchange signaling networks via extracellular vesicles
Cited by: 56
Author(s): Sander Christiaan Steenbeek, Thang V. Pham, Joep de Ligt, Anoek Zomer, Jaco C. Knol, Sander R. Piersma, Tim Schelfhorst, Rick Huisjes, Raymond M. Schiffelers, Edwin Cuppen, Connie R. Jiménez, Jacco van Rheenen
Software Mentions: 1
Published: over 6 years ago

10.1038/srep38624

Genome maintenance and bioenergetics of the long-lived hypoxia-tolerant and cancer-resistant blind mole rat, Spalax: a cross-species analysis of brain transcriptome
Cited by: 25
Author(s): Assaf Malik, Vered Domankevich, Lijuan Han, Xiaodong Fang, Abraham B. Korol, Aaron Avivi, Imad Shams
Software Mentions: 1
Published: almost 8 years ago

10.1038/srep39094

Targeted RNA-Seq profiling of splicing pattern in the DMD gene: exons are mostly constitutively spliced in human skeletal muscle
Cited by: 21
Author(s): Anne-Laure Bougé, Eva M. Murauer, Emmanuelle Beyne, Julie Miro, Jessica Varilh, Magali Taulan, M. Kœnig, Mireille Claustres, Sylvie Tuffery‐Giraud
Software Mentions: 1
Published: almost 8 years ago

10.1038/srep40214

Aminophylline suppresses stress-induced visceral hypersensitivity and defecation in irritable bowel syndrome
Cited by: 16
Author(s): Teita Asano, Ken Ichiro Tanaka, Arisa Tada, Hikaru Shimamura, Rikako Tanaka, Hiroki Maruoka, Mitsuko Takenaga, Tohru Mizushima
Software Mentions: 1
Published: almost 8 years ago

10.7554/eLife.26464

Loss of adult skeletal muscle stem cells drives age-related neuromuscular junction degeneration
Cited by: 96
Author(s): Wenxuan Liu, Alanna Klose, Sophie Forman, Nicole D. Paris, Lan Wei-LaPierre, Mariela Cortés-López, Aidi Tan, Morgan Flaherty, Pedro Miura, Robert T. Dirksen, Joe V. Chakkalakal
Software Mentions: 1
Published: over 7 years ago

10.1016/j.ebiom.2021.103243

Increased apolipoprotein-B:A1 ratio predicts cardiometabolic risk in patients with juvenile onset SLE
Cited by: 20
Author(s): George Robinson, Kirsty E. Waddington, Leda Coelewij, Junjie Peng, Meena Naja, Chris Wincup, Anna Radziszewska, Hannah Peckham, David Isenberg, Yiannis Ioannou, Coziana Ciurtin, Inés Pineda-Torra, Elizabeth C. Jury
Software Mentions: 1
Published: over 3 years ago

10.1016/j.ebiom.2019.11.048

A multistage sequencing strategy pinpoints novel candidate alleles for Emery-Dreifuss muscular dystrophy and supports gene misregulation as its pathomechanism
Cited by: 24
Author(s): Peter Meinke, Alastair Kerr, Rafal Czapiewski, Jose I. de las Heras, Charles R Dixon, Elizabeth Harris, Heike Kölbel, Francesco Muntoni, Ulrike Schara, Volker Straub, Benedikt Schöser, Manfred Wehnert, Eric C. Schirmer
Software Mentions: 1
Published: almost 5 years ago

10.1242/dmm.039545

Active receptor tyrosine kinases, but not Brachyury, are sufficient to trigger chordoma in zebrafish
Cited by: 11
Author(s): Gianluca D’Agati, Elena M. Cabello, Karl Frontzek, Elisabeth J. Rushing, Robin W. Klemm, Mark D. Robinson, Richard M. White, Christian Mosimann, Alexa Burger
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12864-020-6670-5

Hybrid transcriptome sequencing approach improved assembly and gene annotation in Cynara cardunculus (L.)
Cited by: 12
Author(s): G. Puglia, Andrey D. Prjibelski, Domenico Vitale, Elena Bushmanova, Karl Schmid, S.A. Raccuia
Software Mentions: 1
Published: over 4 years ago

10.1186/s12864-019-5533-4

A high-throughput SNP discovery strategy for RNA-seq data
Cited by: 40
Author(s): Yun Zhao, Ke Wang, Wenli Wang, Tingting Yin, Weiqi Dong, Changjie Xu
Software Mentions: 1
Published: over 5 years ago

10.1038/srep43745

Dietary restriction protects against diethylnitrosamine-induced hepatocellular tumorigenesis by restoring the disturbed gene expression profile
Cited by: 16
Author(s): Ting Duan, Wenjie Sun, Mohan Zhang, Juan Ge, Yansu He, Jun Zhang, Yifan Zheng, Wei Yang, Han‐Ming Shen, Jun Yang, Xinqiang Zhu, Peilin Yu
Software Mentions: 1
Published: over 7 years ago

10.3390/ani10020253

Combinatorial Discriminant Analysis Applied to RNAseq Data Reveals a Set of 10 Transcripts as Signatures of Exposure of Cattle to Mycobacterium avium subsp. paratuberculosis
Cited by: 4
Author(s): M. Malvisi, Nico Curti, Daniel Remondini, Maria Grazia De Iorio, Fiorentina Palazzo, G. Gandini, Silvia Vitali, M. Polli, J. L. Williams, Giulietta Minozzi
Software Mentions: 1
Published: almost 5 years ago

10.1242/dmm.040782

Targeted knockout of GABA receptor gamma 2 subunit provokes transient light-induced reflex seizures in zebrafish larvae
Cited by: 24
Author(s): Meijiang Liao, Uday Praful Kundap, Richard Rosch, Dominic R. W. Burrows, Martin P. Meyer, Bouchra Ouled Amar Bencheikh, Patrick Cossette, Éric Samarut
Software Mentions: 1
Published: almost 6 years ago

10.1242/dmm.026104

From integrative genomics to systems genetics in the rat to link genotypes to phenotypes
Cited by: 25
Author(s): Aida Moreno‐Moral, Enrico Petretto
Software Mentions: 1
Published: about 8 years ago

10.1242/dmm.030056

Generation of a double binary transgenic zebrafish model to study myeloid gene regulation in response to oncogene activation in melanocytes
Cited by: 12
Author(s): Amy Kenyon, Daria Gavriouchkina, Jernej Zorman, Vanessa Chong, Giorgio Napolitani, Vincenzo Cerundolo, Tatjana Sauka‐Spengler
Software Mentions: 1
Published: almost 7 years ago

10.1038/srep46440

LPS independent activation of the pro-inflammatory receptor Trem1 by C/EBPε in granulocytes
Cited by: 8
Author(s): Hyung Chan Suh, Touati Benoukraf, S. Pavithra, Tong Yin, Qi Cao, Jonathan Said, Stephen Lee, Raymond Boon Tar Lim, Henry Yang, Jacqueline Salotti, Peter F. Johnson, Vikas Madan, H. Phillip Koeffler
Software Mentions: 1
Published: over 7 years ago

10.1242/dmm.038513

Mandibular dysmorphology due to abnormal embryonic osteogenesis in FGFR2-related craniosynostosis mice
Cited by: 19
Author(s): Susan M. Motch Perrine, Meng Wu, Nicholas B. Stephens, Divya Kriti, Harm van Bakel, Ethylin Wang Jabs, Joan T. Richtsmeier
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12864-015-1267-0

Splicing landscape of the eight collaborative cross founder strains
Cited by: 7
Author(s): Christina Zheng, Beth Wilmot, Nicole A.R. Walter, Denesa Oberbeck, Sunita Kawane, Robert P. Searles, Shannon K. McWeeney, Robert Hitzemann
Software Mentions: 1
Published: almost 10 years ago

10.1038/s41598-017-00575-0

Eμ and 3′RR IgH enhancers show hierarchic unilateral dependence in mature B-cells
Cited by: 17
Author(s): Alexis Saintamand, Christelle Vincent-Fabert, Marie Marquet, Nour Ghazzaui, Virginie Magnone, Eric Pinaud, Michel Cogné, Yves Denizot
Software Mentions: 1
Published: over 7 years ago

10.1186/s12864-016-3262-5

Sequence-specific bias correction for RNA-seq data using recurrent neural networks
Cited by: 13
Author(s): Yao-Zhong Zhang, Rui Yamaguchi, Seiya Imoto, Satoru Miyano
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41598-017-00801-9

Frequent GU wobble pairings reduce translation efficiency in Plasmodium falciparum
Cited by: 13
Author(s): Sherwin Chan, Jun-Hong Ch’ng, Mats Wahlgren, Jessada Thutkawkorapin
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-017-01165-w

Low-cost, Low-bias and Low-input RNA-seq with High Experimental Verifiability based on Semiconductor Sequencing
Cited by: 7
Author(s): Zhibiao Mai, Chuan-Le Xiao, Jingjie Jin, Gong Zhang
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-017-01377-0

Transcriptomic response of durum wheat to nitrogen starvation
Cited by: 103
Author(s): Pasquale Luca Curci, Riccardo Aiese Cigliano, Diana L. Zuluaga, Michela Janni, Walter Sanseverino, Gabriella Sonnante
Software Mentions: 1
Published: over 7 years ago

10.1242/dmm.040105

Characterization of the human GnRH neuron developmental transcriptome using a GNRH1-TdTomato reporter line in human pluripotent stem cells
Cited by: 17
Author(s): Carina Lund, Venkatram Yellapragada, Sanna Vuoristo, Diego Balboa, Sara Trova, Cécile Allet, Nazli Eskici, Kristiina Pulli, Paolo Giacobini, Timo Tuuri, Taneli Raivio
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-017-02520-7

Tropospheric Warming Over The Past Two Decades
Cited by: 20
Author(s): Benjamin D. Santer, Susan Solomon, F. J. Wentz, Qiang Fu, Stephen Po‐Chedley, C. A. Mears, Jeffrey F. Painter, C. Bonfils
Software Mentions: 1
Published: over 7 years ago

10.1242/dmm.038083

Modelling the MYC-driven normal-to-tumour switch in breast cancer
Cited by: 13
Author(s): Corey Lourenco, Manpreet Kalkat, Kathleen E. Houlahan, Jason De Melo, Joseph Longo, Susan J. Done, Paul C. Boutros, Linda Z. Penn
Software Mentions: 1
Published: over 5 years ago

10.3390/diagnostics9040219

A Hierarchical Machine Learning Model to Discover Gleason Grade-Specific Biomarkers in Prostate Cancer
Cited by: 17
Author(s): Osama Hamzeh, Abedalrhman Alkhateeb, Julia Zheng, Srinath Kandalam, Crystal Pui Sha Leung, Govindaraja Atikukke, Dora Cavallo-Medved, Nallasivam Palanisamy, Luis Rueda
Software Mentions: 1
Published: almost 5 years ago

10.1186/s13000-021-01138-8

A second hit somatic (p.R905W) and a novel germline intron-mutation of TSC2 gene is found in intestinal lymphangioleiomyomatosis: a case report with literature review
Cited by: 2
Author(s): Bogyeong Han, Juhwan Lee, Yoonjin Kwak, Ho Kim, Kwang Hoon Lee, Yumi Shim, Hyunju Lee, Jong Bae Park
Software Mentions: 1
Published: about 3 years ago

10.1242/dev.193037

Human yolk sac-like haematopoiesis generates RUNX1- and GFI1/1B-dependent blood and SOX17-positive endothelium
Cited by: 14
Author(s): Freya Bruveris, Elizabeth Ng, Ana Rita Leitoguinho, Ali Motazedian, Katerina Vlahos, Koula Sourris, Robyn Mayberry, Penelope McDonald, Lisa Azzola, N. Davidson, Alicia Oshlack, Edouard G. Stanley
Software Mentions: 1
Published: almost 5 years ago

10.1242/dev.177618

Pax9 is required for cardiovascular development and interacts with Tbx1 in the pharyngeal endoderm to control 4th pharyngeal arch artery morphogenesis
Cited by: 19
Author(s): Helen M. Phillips, Catherine A. Stothard, Wasay Mohiuddin Shaikh Qureshi, Anastasia I. Kousa, J. Alberto Briones-Leon, Ramada R. Khasawneh, Chloe O’Loughlin, Rachel Sanders, Silvia Mazzotta, Rebecca Dodds, Kerstin Seidel, Timothy Bates, Mitsushiro Nakatomi, Simon Cockell, Jürgen Schneider, Timothy J. Mohun, René Maehr, Ralf Kist, Heiko Peters, Simon D. Bamforth
Software Mentions: 1
Published: almost 6 years ago

10.1242/dev.170266

The KRAB-Zinc finger protein ZFP708 mediates epigenetic repression at RMER19B retrotransposons
Cited by: 16
Author(s): Michelle K. Y. Seah, Yaju Wang, Pierre-Alexis Goy, Hui Mun Loh, Wen Jun Peh, Diana Low, Brenda Y. Han, Esther Wong, Ei Leen Leong, Gernot Wolf, Slim Mzoughi, Heike Wollmann, Todd S. Macfarlan, Ernesto Guccione, Daniel M. Messerschmidt
Software Mentions: 1
Published: almost 6 years ago

10.1242/dev.167197

Prepubertal skeletal muscle growth requires Pax7-expressing satellite cell-derived myonuclear contribution
Cited by: 88
Author(s): John F. Bachman, Alanna Klose, Wenxuan Liu, Nicole D. Paris, R Blanc, Melissa Schmalz, Emma Knapp, Joe V. Chakkalakal
Software Mentions: 1
Published: almost 7 years ago

10.1016/j.devcel.2019.04.006

A GBF1-Dependent Mechanism for Environmentally Responsive Regulation of ER-Golgi Transport
Cited by: 34
Author(s): Mafalda Lopes da Silva, Jessica McCormack, Jemima J. Burden, Kimberly J. Harrison‐Lavoie, Francesco Ferraro, Daniel Cutler
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-017-04333-0

Hypoxia is a Key Driver of Alternative Splicing in Human Breast Cancer Cells
Cited by: 52
Author(s): Jian Han, Jia Li, Jeongwon Ho, Grace Sushin Chia, Hiroyuki Kato, Sudhakar Jha, Henry Yang, Lorenz Poellinger, Kian Leong Lee
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-017-04356-7

Comprehensive investigation of temporal and autism-associated cell type composition-dependent and independent gene expression changes in human brains
Cited by: 28
Author(s): Qianhui Yu, Zhisong He
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-017-04654-0

Synergistic cellular effects including mitochondrial destabilization, autophagy and apoptosis following low-level exposure to a mixture of lipophilic persistent organic pollutants
Cited by: 18
Author(s): Nathan Earl Rainey, Ana Šarić, Alexandre Leberre, Etienne Dewailly, Christian Slomianny, Guillaume Vial, Harold I. Zeliger, Patrice X. Petit
Software Mentions: 1
Published: over 7 years ago

10.1590/S1980-57642009DN30300008

The ex-illiterate brain: The critical period, cognitive reserve and HAROLD model
Cited by: 11
Author(s): Maria Vãnia Nunes, Alexandre Castro-Caldas, Dolores Del Rio, F Maestú, Tomás Ortiz
Software Mentions: 1
Published: about 15 years ago

10.1038/s41598-017-05720-3

Gene Network Dysregulation in Dorsolateral Prefrontal Cortex Neurons of Humans with Cocaine Use Disorder
Cited by: 36
Author(s): Efrain Ribeiro, Joseph R. Scarpa, Susanna P. Garamszegi, Andrew Kasarskis, Deborah C. Mash, Eric J. Nestler
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0238117

Temporal transcriptome analysis suggest modulation of multiple pathways and gene network involved in cell-cell interaction during early phase of high altitude exposure
Cited by: 6
Author(s): Priya Gaur, Supriya Saini, Koushik Ray, Nadira Kushubakova, Almaz Akunov, Abdirashit Maripov, Akpay Sarybaev, Shashi Bala Singh, Bhuvnesh Kumar, Praveen Vats
Software Mentions: 1
Published: about 4 years ago

10.1128/mSphere.00386-19

Optimizing Systems for Cas9 Expression in Toxoplasma gondii
Cited by: 32
Author(s): Benedikt M. Markus, George W. Bell, Hernán Lorenzi, Sebastian Lourido
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0219938

An important role of podoplanin in hair follicle growth
Cited by: 9
Author(s): Sun Young Yoon, Lothar C. Dieterich, Carlotta Tacconi, Marko Sesartić, Yuliang He, Lorenz M. Brunner, Oh Sang Kwon, Michael Detmar
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0219280

Loss of function mutation of Eftud2, the gene responsible for mandibulofacial dysostosis with microcephaly (MFDM), leads to pre-implantation arrest in mouse
Cited by: 20
Author(s): Marie‐Claude Beauchamp, Anissa Djedid, Kevin Daupin, Kayla Clokie, Shruti Kumar, Jacek Majewski, Loydie A. Jerome-Majewska
Software Mentions: 1
Published: over 5 years ago

10.1016/j.jacc.2021.07.018

Innate Lymphoid Cells Promote Recovery of Ventricular Function After Myocardial Infarction
Cited by: 24
Author(s): Yu Lei, Stephen A. Newland, Tian Zhao, Yuning Lu, Andrew S. Sage, Yanqing Sun, Rouchelle Sriranjan, Marcella K.L., Brian Lam, Meritxell Nus, James Harrison, Simon Bond, Xiang Cheng, Jean‐Sébastien Silvestre, James H.F. Rudd, Joseph Cheriyan, Ziad Mallat
Software Mentions: 1
Published: about 3 years ago

10.1200/PO.18.00105

Personalized Clinical Decision Making Through Implementation of a Molecular Tumor Board: A German Single-Center Experience
Cited by: 30
Author(s): Rouven Hoefflin, Anna-Lena Geißler, Ralph Fritsch, Rainer Claus, Julius Wehrle, Patrick Bastos Metzger, Meike Reiser, Leman Mehmed, Lisa Fauth, Dieter Henrik Heiland, Thalia Erbes, Friedrich Stock, Ágnes Csanádi, Cornelius Miething, Britta Weddeling, Frank Meiß, Dagmar von Bubnoff, Christine Dierks, Isabell Ge, Volker Brass, Steffen Heeg, Henning Schäfer, Martin Boeker, Justyna Rawluk, Elke Botzenhart, Gian Kayser, Simone Hettmer, Hauke Busch, Christoph Peters, Martin Werner, Justus Duyster, Tilman Brummer, Melanie Boerries, Silke Laßmann, Nikolas von Bubnoff
Software Mentions: 1
Published: about 6 years ago

10.1200/PO.18.00297

Crizotinib and Surgery for Long-Term Disease Control in Children and Adolescents With ALK-Positive Inflammatory Myofibroblastic Tumors
Cited by: 21
Author(s): Toby N. Trahair, Andrew J. Gifford, Ashleigh M. Fordham, Chelsea Mayoh, Mitali Fadia, Robyn Lukeis, Andrew C. Wood, Santosh Valvi, Rodney A. Walker, James Blackburn, Erin E. Heyer, Tim R. Mercer, Draga Barbaric, Glenn M. Marshall, Karen L. MacKenzie
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.pone.0182238

Minimum variance rooting of phylogenetic trees and implications for species tree reconstruction
Cited by: 60
Author(s): Uyen Mai, Erfan Sayyari, Siavash Mirarab
Software Mentions: 1
Published: over 7 years ago

10.1172/jci.insight.148147

Type II alveolar epithelial cell–specific loss of RhoA exacerbates allergic airway inflammation through SLC26A4
Cited by: 4
Author(s): C. Danh, Yan Zhang, Wei Tu, Xinyue Hu, Xiaojun Xiao, Jingsi Chen, Haiping Hao, Zhigang Liu, Jing Li, Shau Ku Huang, Mei Wan, Peisong Gao
Software Mentions: 1
Published: over 3 years ago

10.1172/jci.insight.146314

TNF blockade uncouples toxicity from antitumor efficacy induced with CD40 chemoimmunotherapy
Cited by: 5
Author(s): Maureen Stone, Vivian Lee, Veronica M. Herrera, Kathleen Graham, Jae Woo Lee, Austin P. Huffman, Heather Coho, Evan Tooker, Max I. Myers, Michael A. Giannone, Yan Li, Thomas H. Buckingham, Kristen B. Long, Gregory L. Beatty
Software Mentions: 1
Published: over 3 years ago

10.1172/jci.insight.146572

The role of Sp140 revealed in IgE and mast cell responses in Collaborative Cross mice
Cited by: 8
Author(s): Kazunobu Matsushita, Xin Li, Yuki Nakamura, Danyue Dong, Kaori Mukai, Mindy Tsai, S Montgomery, Stephen J. Galli
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pone.0175393

Identification of human short introns
Cited by: 13
Author(s): Emmanuel L. Abebrese, Sadia Ali, Zachary R. Arnold, Victoria M. Andrews, Katharine Fairlie Armstrong, Lindsay H. Burns, Hannah R. Crowder, R. Thomas Day, Daniel G. Hsu, Katherine Jarrell, Grace Lee, Yi Luo, Daphine Mugayo, Zain Raza, Kyle Friend
Software Mentions: 1
Published: over 7 years ago

10.1128/mSystems.00204-20

Overexpression of the Small RNA PA0805.1 in Pseudomonas aeruginosa Modulates the Expression of a Large Set of Genes and Proteins, Resulting in Altered Motility, Cytotoxicity, and Tobramycin Resistance
Cited by: 13
Author(s): Shannon R. Coleman, Maren L. Smith, Victor Spicer, Ying Lao, Neeloffer Mookherjee, Robert E. W. Hancock
Software Mentions: 1
Published: over 4 years ago

10.1172/jci.insight.149033

Gut germinal center regeneration and enhanced antiviral immunity by mesenchymal stem/stromal cells in SIV infection
Cited by: 7
Author(s): Mariana G. Weber, C. J. Walters, Amir Kol, Clarissa Santos Rocha, Lauren A. Hirao, Abigail L Mende, Bipin Balan, Juan Arredondo, Sonny R. Elizaldi, Smita S. Iyer, Alice F. Tarantal, Satya Dandekar
Software Mentions: 1
Published: over 3 years ago

10.1172/jci.insight.140627

LncRNA VINAS regulates atherosclerosis by modulating NF-κB and MAPK signaling
Cited by: 46
Author(s): Viorel Simion, Hong-Hao Zhou, Jacob B. Pierce, Dafeng Yang, Stefan Haemmig, Yevgenia Tesmenitsky, Galina K. Sukhova, Peter H. Stone, Peter Libby, Mark W. Feinberg
Software Mentions: 1
Published: about 4 years ago

10.1172/jci.insight.142560

Tumor genotype, location, and malignant potential shape the immunogenicity of primary untreated gastrointestinal stromal tumors
Cited by: 10
Author(s): Daniela Gasparotto, Marta Sbaraglia, Sabrina Rossi, Davide Baldazzi, Monica Brenca, Alessia Mondello, Federica Nardi, Dominga Racanelli, Matilde Cacciatore, Angelo Paolo Dei Tos, Roberta Maestro
Software Mentions: 1
Published: about 4 years ago

10.18632/oncotarget.26673

The X-linked tumor suppressor TSPX downregulates cancer-drivers/oncogenes in prostate cancer in a C-terminal acidic domain dependent manner
Cited by: 5
Author(s): Tatsuo Kido, Yunmin Li, Yuichiro Tanaka, Rajvir Dahiya, Yun‐Fai Chris Lau
Software Mentions: 1
Published: almost 6 years ago

10.1128/mSystems.00898-20

Endogenous Metabolites Released by Sanitized Sprouting Alfalfa Seed Inhibit the Growth of Salmonella enterica
Cited by: 2
Author(s): Ga-Hee Ban, Yue Dai, Tao Huan, Alfred Ke, Pascal Delaquis, Siyun Wang
Software Mentions: 1
Published: over 3 years ago

10.1172/jci.insight.141217

Liver epithelial focal adhesion kinase modulates fibrogenesis and hedgehog signaling
Cited by: 9
Author(s): Yun Weng, Tyler J Lieberthal, Vivian X. Zhou, Maya Lopez-Ichikawa, Manuel Armas-Phan, Tristan K Bond, Miya Yoshida, Won‐Tak Choi, Tzu-Ming Chang
Software Mentions: 1
Published: about 4 years ago

10.1002/jbm4.10071

MicroRNA‐138 Inhibits Osteogenic Differentiation and Mineralization of Human Dedifferentiated Chondrocytes by Regulating RhoC and the Actin Cytoskeleton
Cited by: 17
Author(s): Hongjun Zhang, David Ramnaraign, Britta A. Anderson, Eric Tycksen, Ryan M. Nunley, Audrey McAlinden
Software Mentions: 1
Published: over 6 years ago

10.3390/insects10120442

Characterization of Dendrolimus houi Lajonquiere (Lepidoptera: Lasiocampidae) Transcriptome across All Life Stages
Cited by: 7
Author(s): Xuelei Han, Ciding Lu, Scott M. Geib, Jia Wei Zheng, Songqing Wu, Feiping Zhang, Guangwen Liang
Software Mentions: 1
Published: almost 5 years ago

10.1186/s13027-019-0253-6

A meta-analysis on genetic variability of RT/HBsAg overlapping region of hepatitis B virus (HBV) isolates of Bangladesh
Cited by: 13
Author(s): Md. Golzar Hossain, Keiji Ueda
Software Mentions: 1
Published: about 5 years ago

10.1016/j.immuni.2019.01.004

Survival of Single Positive Thymocytes Depends upon Developmental Control of RIPK1 Kinase Signaling by the IKK Complex Independent of NF-κB
Cited by: 23
Author(s): Louise V. Webb, Alessandro Barbarulo, Jelle Huysentruyt, Tom Vanden Berghe, Nozomi Takahashi, Steven C. Ley, Peter Vandenabeele, Benedict Seddon
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12979-020-00198-6

ARID3a expression in human hematopoietic stem cells is associated with distinct gene patterns in aged individuals
Cited by: 6
Author(s): Michelle Ratliff, Joshua W. Garton, Judith A. James, Carol F. Webb
Software Mentions: 1
Published: about 4 years ago

10.1186/s43008-019-0013-7

IMA Genome-F 11
Cited by: 11
Author(s): Brenda D. Wingfield, Arista Fourie, M.C. Simpson, Vuyiswa Bushula-Njah, Janneke Aylward, Irene Barnes, Martin Petrus Albertus Coetzee, L.L. Dreyer, Tuan A. Duong, David M. Geiser, Francois Roets, Emma Theodora Steenkamp, Magriet A. van der Nest, Carel van Heerden
Software Mentions: 1
Published: about 5 years ago

10.18632/oncotarget.26797

Clinical validation of the tempus xT next-generation targeted oncology sequencing assay
Cited by: 101
Author(s): Nike Beaubier, Robert Tell, Denise Lau, Jerod Parsons, Stephen J. Bush, Jason Perera, Shelly Sorrells, Timothy Baker, Alan L. Chang, Jackson Michuda, Catherine Iguartua, Shelley M. MacNeil, Kaanan P. Shah, Philip Ellis, Kimberly Yeatts, Brett Mahon, Timothy J. Taxter, Martin Bontrager, Aly A. Khan, Robert Huether, Eric Lefkofsky, Kevin P. White
Software Mentions: 1
Published: over 5 years ago

10.18632/oncotarget.26808

Large-scale in-silico identification of a tumor-specific antigen pool for targeted immunotherapy in triple-negative breast cancer
Cited by: 9
Author(s): Jessica Kaufmann, Nicolas Wentzensen, Titus J. Brinker, Niels Grabe
Software Mentions: 1
Published: over 5 years ago

10.1038/s41438-020-0301-9

Hybrid de novo genome assembly of red gromwell (Lithospermum erythrorhizon) reveals evolutionary insight into shikonin biosynthesis
Cited by: 28
Author(s): Robert Auber, Thiti Suttiyut, Rachel M. McCoy, Manoj Ghaste, Joseph W. Crook, Amanda L. Pendleton, Joshua R. Widhalm, Jennifer H. Wisecaver
Software Mentions: 1
Published: over 4 years ago

10.1038/s41438-021-00476-4

Reannotation of the cultivated strawberry genome and establishment of a strawberry genome database
Cited by: 36
Author(s): Tianjia Liu, Muzi Li, Zhongchi Liu, Xiaoyan Ai, Yongping Li
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pone.0141298

Evidence of Extensive Alternative Splicing in Post Mortem Human Brain HTT Transcription by mRNA Sequencing
Cited by: 17
Author(s): Adam Labadorf, Richard H. Myers
Software Mentions: 1
Published: about 9 years ago

10.1038/s41438-021-00613-z

An ancient whole-genome duplication event and its contribution to flavor compounds in the tea plant (Camellia sinensis)
Cited by: 22
Author(s): Ya Wang, Fei Chen, Yuanchun Ma, Taikui Zhang, Pengchuan Sun, Mei-Fang Lan, Fang Li, Wanping Fang
Software Mentions: 1
Published: over 3 years ago

10.1038/s41438-019-0142-6

Updated annotation of the wild strawberry Fragaria vesca V4 genome
Cited by: 85
Author(s): Yongping Li, Mengting Pi, Qi Gao, Zhongchi Liu, Chunying Kang
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0203543

Plausibility of the zebrafish embryos/larvae as an alternative animal model for autism: A comparison study of transcriptome changes
Cited by: 15
Author(s): Sang‐Woo Lee, Hang-Suk Chun, Jieon Lee, Han-Jin Park, Ki-Tae Kim, Cheol-Hee Kim, Seokjoo Yoon, Woo‐Keun Kim
Software Mentions: 1
Published: about 6 years ago

10.1038/s41437-021-00434-9

On the origin of the widespread self-compatible allotetraploid Capsella bursa-pastoris (Brassicaceae)
Cited by: 7
Author(s): Jörg A. Bachmann, Andrew Tedder, Marco Fracassetti, Kim A. Steige, Clément Lafon‐Placette, Claudia Köhler, Tanja Slotte
Software Mentions: 1
Published: over 3 years ago

10.1016/j.heliyon.2020.e05850

Atlas of ACE2 gene expression reveals novel insights into transmission of SARS-CoV-2
Cited by: 49
Author(s): Kun Sun, Liuqi Gu, Li Ma, Yugang Duan
Software Mentions: 1
Published: almost 4 years ago

10.1186/1477-7525-8-82

Validation study of a web-based assessment of functional recovery after radical prostatectomy
Cited by: 57
Author(s): Andrew J. Vickers, Caroline Savage, Marwan Shouery, James A. Eastham, Peter T. Scardino, Ethan Basch
Software Mentions: 1
Published: over 14 years ago

10.1186/s12955-018-0858-2

Assessing the reliability of the short form 12 (SF-12) health survey in adults with mental health conditions: a report from the wellness incentive and navigation (WIN) study
Cited by: 138
Author(s): Tianyao Huo, Yi Guo, Elizabeth Shenkman, Keith E. Muller
Software Mentions: 1
Published: almost 7 years ago

10.1080/16549716.2019.1664103

The logic model for Uganda’s health sector preparedness for public health threats and emergencies
Cited by: 12
Author(s): Alex Riolexus Ario, Issa Makumbi, Lilian Bulage, Simon Kyazze, Joshua Kayiwa, Milton Wetaka, Juliet N. Kasule, Felix Ocom
Software Mentions: 1
Published: almost 6 years ago

10.1002/glia.23516

The miRNA biogenesis pathway prevents inappropriate expression of injury response genes in developing and adult Schwann cells
Cited by: 8
Author(s): Deniz Gökbuget, Jorge A. Pereira, Lennart Opitz, Dominik Christe, Tobias Keßler, Antonin Marchais, Ueli Suter
Software Mentions: 1
Published: about 6 years ago

10.7554/eLife.44702

CNS myelination and remyelination depend on fatty acid synthesis by oligodendrocytes
Cited by: 82
Author(s): Penelope Dimas, Laura Montani, Jorge A. Pereira, Daniel Antunes Moreno, Martin Trötzmüller, Joanne Gerber, Clay F. Semenkovich, Harald Köfeler, Ueli Suter
Software Mentions: 1
Published: over 5 years ago

10.1093/gigascience/giz019

De novo genome assembly of the white-spotted flower chafer (Protaetia brevitarsis)
Cited by: 25
Author(s): Kui Wang, Pengpeng Li, Yongyang Gao, Chunqin Liu, Qinglei Wang, Jing Yin, Jie Zhang, Geng Li, Changlong Shu
Software Mentions: 1
Published: over 5 years ago

10.7554/eLife.39304

An ancient germ cell-specific RNA-binding protein protects the germline from cryptic splice site poisoning
Cited by: 20
Author(s): Ingrid Ehrmann, James H Crichton, Matthew R. Gazzara, Katherine James, Yilei Liu, Sushma Nagaraja Grellscheid, Tomaž Curk, Dirk G. de Rooij, Jannetta S. Steyn, Simon Cockell, Ian R. Adams, Yoseph Barash, David Elliott
Software Mentions: 1
Published: almost 6 years ago

10.1093/gigascience/giy092

Hot-starting software containers for STAR aligner
Cited by: 8
Author(s): Pai Zhang, Ling‐Hong Hung, Wes Lloyd, Ka Yee Yeung
Software Mentions: 1
Published: over 6 years ago

10.3390/genes12060883

The Combined Human Genotype of Truncating TTN and RBM20 Mutations Is Associated with Severe and Early Onset of Dilated Cardiomyopathy
Cited by: 11
Author(s): Anna Gärtner, Julia Bloebaum, Hendrik Milting, Bärbel Klauke, Katharina Sielemann, Astrid Kassner, Henrik Fox, Michiel Morshuis, Jens Tiesmeier, Uwe Schulz, Ralph Knoell, Jan Gummert, Hendrik Milting
Software Mentions: 1
Published: over 3 years ago

Projects: cran: STAR

Papers Mentioning STAR 5,759