cran: STAR | Projects | Ecosyste.ms: Papers

10.6028/jres.101.035

CIF (Crystallographic Information File). A standard for crystallographic data interchange
Cited by: 10
Author(s): I. D. Brown
Software Mentions: 1
Published: about 30 years ago

Transcriptomic Profiling of Adipose Derived Stem Cells Undergoing Osteogenesis by RNA-Seq
Cited by: 29
Author(s): Shahensha Shaik, Elizabeth C. Martin, Daniel J. Hayes, Jeffrey M. Gimble, Ram V. Devireddy
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-019-47357-4

Extracellular endonucleases in the midgut of Myzus persicae may limit the efficacy of orally delivered RNAi
Cited by: 18
Author(s): Amol Bharat Ghodke, Robert T. Good, John F. Golz, Derek Russell, Owain Edwards, Charles Robin
Software Mentions: 1
Published: almost 7 years ago

10.3389/fpsyt.2019.00575

Psychometric Properties of Scale to Assess the Therapeutic Relationship—JapaneseVersion (STAR-J)
Cited by: 5
Author(s): Asami Matsunaga, Sosei Yamaguchi, Utako Sawada, Takuma Shiozawa, Chiyo Fujii
Software Mentions: 1
Published: almost 7 years ago

10.3389/fpsyt.2018.00597

Evaluation of the Association Between Genetic Variants in Circadian Rhythm Genes and Posttraumatic Stress Symptoms Identifies a Potential Functional Allele in the Transcription Factor TEF
Cited by: 8
Author(s): Sarah D. Linnstaedt, Yue Pan, Matthew C. Mauck, Jenyth Sullivan, Christine Zhou, Lindsey Jung, Cathleen A. Rueckeis, Jameson D Blount, Matthew S Carson, Andrew S. Tungate, Michael C. Kurz, Phyllis L. Hendry, Christopher Lewandowski, Teresa D׳Anza, Elizabeth M. Datner, Kathy Bell, Megan Lechner, Jeffrey W. Shupp, Bruce A. Cairns, Samuel A. McLean
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-019-49020-4

Proteasome dysfunction in alveolar type 2 epithelial cells is associated with acute respiratory distress syndrome
Cited by: 13
Author(s): Sneha Sitaraman, Cheng-Lun Na, Yang Li, Alyssa Filuta, James P. Bridges, Timothy E. Weaver
Software Mentions: 1
Published: almost 7 years ago

10.3389/fpsyt.2020.565896

Contextualized School-Based Cognitive Behavioral Therapy (CBT) Intervention for Malaysian Secondary School Students
Cited by: 0
Author(s): Jo Anne Saw, Cai Lian Tam, Vanlal Thanzami, Gregory Bonn
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-50058-7

TET2 catalyzes active DNA demethylation of the Sry promoter and enhances its expression
Cited by: 7
Author(s): Naoki Okashita, Shunsuke Kuroki, Ryo Maeda, Makoto Tachibana
Software Mentions: 1
Published: almost 7 years ago

10.3389/fpsyt.2020.00276

Functional Neuroimaging in Psychiatry—Aiding in Diagnosis and Guiding Treatment. What the American Psychiatric Association Does Not Know
Cited by: 28
Author(s): Theodore A. Henderson, Muriel J. van Lierop, Mary Kay McLean, J.M. Uszler, John F. Thornton, Yin-Hui Siow, Dan G. Pavel, Joe Cardaci, Philip Cohen
Software Mentions: 1
Published: about 6 years ago

10.3389/fcvm.2018.00069

Krüppel-Like Factors in Metabolic Homeostasis and Cardiometabolic Disease
Cited by: 37
Author(s): Yumiko Oishi, Ichiro Manabe
Software Mentions: 1
Published: about 8 years ago

10.3389/fcvm.2020.565471

Case Report: A Case Report of Stereotactic Ventricular Arrhythmia Radioablation (STAR) on Large Cardiac Target Volume by Highly Personalized Inter- and Intra-fractional Image Guidance
Cited by: 4
Author(s): Maria Lucia Narducci, Francesco Cellini, L. Placidi, Luca Boldrini, Francesco Perna, Gianluigi Bencardino, Gaetano Pinnacchio, R Bertolini, G Cannelli, V. Frascino, Luca Tagliaferri, S. Chiesa, Gian Carlo Mattiucci, Mario Boccadoro, Maria Antonietta Gambacorta, Marco Rossi, Luca Indovina, Gemma Pelargonio, Vincenzo Valentini, Filippo Crea
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-021-88628-3

Arginyltransferase (Ate1) regulates the RGS7 protein level and the sensitivity of light-evoked ON-bipolar responses
Cited by: 5
Author(s): Marie E. Fina, Junling Wang, Sergei Nikonov, Stephanie Sterling, Noga Vardi, Anna Kashina, Dawei Dong
Software Mentions: 1
Published: about 5 years ago

10.3389/fpsyt.2020.00779

Engaging Adults Experiencing Homelessness in Recovery Education: A Qualitative Analysis of Individual and Program Level Enabling Factors
Cited by: 5
Author(s): Bushra Khan, Nadine Reid, Rebecca Brown, Nicole Kozloff, Vicky Stergiopoulos
Software Mentions: 1
Published: almost 6 years ago

10.1016/j.heliyon.2020.e05850

Atlas of ACE2 gene expression reveals novel insights into transmission of SARS-CoV-2
Cited by: 49
Author(s): Kun Sun, Liuqi Gu, Li Ma, Yugang Duan
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-021-88671-0

Germinal GLT8D1, GATAD2A and SLC25A39 mutations in a patient with a glomangiopericytal tumor and five different sarcomas over a 10-year period
Cited by: 0
Author(s): Arnaud Beddok, Gaëlle Pérot, Sophie Le Guellec, Noémie Thébault, Alexandre Coutté, Henri Sevestre, Bruno Chauffert, Frédéric Chibon
Software Mentions: 1
Published: about 5 years ago

10.1155/2021/9970896

Toxicology and Biodegradability of a Phthalate-Free and Bio-Based Novel Plasticizer
Cited by: 6
Author(s): Sophie Simar-Mentières, Fabrice Nesslany, M.-L. Sola, S. Mortier, Jérôme Raimbault, Franck Gondelle, Laure Chabot, Pascal Pandard, Daniel Wils, Aouatif Chentouf
Software Mentions: 1
Published: almost 5 years ago

10.3390/insects10120442

Characterization of Dendrolimus houi Lajonquiere (Lepidoptera: Lasiocampidae) Transcriptome across All Life Stages
Cited by: 7
Author(s): Xuelei Han, Ciding Lu, Scott M. Geib, Jia Wei Zheng, Songqing Wu, Feiping Zhang, Guangwen Liang
Software Mentions: 1
Published: over 6 years ago

10.3389/fpsyg.2015.00064

Children with speech sound disorder: comparing a non-linguistic auditory approach with a phonological intervention approach to improve phonological skills
Cited by: 6
Author(s): Cristina Ferraz Borges Murphy, Luciana O. Pagan-Neves, HaydÃ©e F. Wertzner, Eliane Schochat
Software Mentions: 1
Published: over 11 years ago

10.3389/fpsyg.2021.629231

Assessment Methods for Service-Learning Projects in Engineering in Higher Education: A Systematic Review
Cited by: 7
Author(s): Marián Queiruga-Dios, María Jesús Santos Sánchez, Miguel Ángel Queiruga Dios, Pedro Mauricio Acosta Castellanos, Araceli Queiruga Dios
Software Mentions: 1
Published: almost 5 years ago

10.3389/fpsyg.2019.02026

Auditory Stimulation Training With Technically Manipulated Musical Material in Preschool Children With Specific Language Impairments: An Explorative Study
Cited by: 7
Author(s): Ingo Roden, Kaija Früchtenicht, Gunter Kreutz, Friedrich Linderkamp, Dietmar Grube
Software Mentions: 1
Published: almost 7 years ago

10.1016/j.xcrm.2020.100036

Identification of SARS-CoV-2 Vaccine Epitopes Predicted to Induce Long-Term Population-Scale Immunity
Cited by: 59
Author(s): Mark Yarmarkovich, John M. Warrington, Alvin Farrel, John M. Maris
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-021-90047-3

From multi-omics integration towards novel genomic interaction networks to identify key cancer cell line characteristics
Cited by: 2
Author(s): T. J. M. Kuijpers, J. C. S. Kleinjans, Danyel Jennen
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-021-89927-5

Predicting MHC I restricted T cell epitopes in mice with NAP-CNB, a novel online tool
Cited by: 3
Author(s): Carlos Wert-Carvajal, Rubén J. Sánchez-García, José Ramón Macías, Rebeca Sanz‐Pamplona, Almudena Méndez Pérez, Ramón Alemany, Esteban Veiga, C.O.S. Sorzano, Arrate Muñoz-Barrutia
Software Mentions: 1
Published: about 5 years ago

10.3389/fcvm.2021.689318

Diabetes Promotes Retinal Vascular Endothelial Cell Injury by Inducing CCN1 Expression
Cited by: 8
Author(s): Haicheng Li, Ting Li, Heting Wang, Xianghui He, Ying Li, Siying Wen, Rongdong Peng, Yuanpeng Nie, Yan Lu, Yang He, Yinong Ye, Guojun Shi, Yanming Chen
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.pgen.1007587

Transcription factor ASCL2 is required for development of the glycogen trophoblast cell lineage
Cited by: 19
Author(s): Aaron B. Bogutz, Rosemary Oh-McGinnis, Karen J. Jacob, Rita Ho-Lau, Ting Gu, Marina Gertsenstein, András Nagy, Louis Lefebvre
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41598-021-90798-z

Transcriptome analysis of MBD5-associated neurodevelopmental disorder (MAND) neural progenitor cells reveals dysregulation of autism-associated genes
Cited by: 4
Author(s): Sureni V Mullegama, Stephen P. Klein, Stephen R. Williams, Jeffrey W. Innis, Frank J. Probst, Chad R. Haldeman-Englert, Julián A. Martínez-Agosto, Ying Yang, Yuchen Tian, Sarah H. Elsea, Toshihiko Ezashi
Software Mentions: 1
Published: about 5 years ago

10.1016/j.jtauto.2021.100090

An elevated polyclonal free light chain level reflects a strong interferon signature in patients with systemic autoimmune diseases
Cited by: 12
Author(s): Éléonore Bettacchioli, Christelle Le Gaffric, Margaux Mazeas, María Orietta Borghi, Johan Frostegård, Guillermo Barturen, Zuzanna Makowska, Sepideh Babei, Ralf Lesche, Pier Luigi Meroni, Marta E. Alarcón‐Riquelme, Yves Renaudineau
Software Mentions: 1
Published: over 5 years ago

10.7554/eLife.45241

TEADs, Yap, Taz, Vgll4s transcription factors control the establishment of Left-Right asymmetry in zebrafish
Cited by: 13
Author(s): Jonathan Fillâtre, Jean-Daniel Fauny, Jasmine Alexandra Fels, Cheng Li, Mary Goll, Christine Thisse, Bernard Thisse
Software Mentions: 1
Published: almost 7 years ago

10.3389/fpubh.2021.593453

Sustainable Behavior Change for Health Supported by Person-Tailored, Adaptive, Risk-Aware Digital Coaching in a Social Context: Study Protocol for the STAR-C Research Programme
Cited by: 3
Author(s): Nawi Ng, Malin Eriksson, Esteban Guerrero, Carina Gustafsson, John Kinsman, Jens Lindberg, Helena Lindgren, Kristina Lindvall, Anna Sofia Lundgren, Göran Lönnberg, Klas-Göran Sahlén, Ailiana Santosa, Linda Richter Sundberg, Lars Weinehall, Patrik Wennberg
Software Mentions: 1
Published: over 5 years ago

10.3389/fbioe.2020.595552

Multi-Omics Analysis of the Effect of cAMP on Actinorhodin Production in Streptomyces coelicolor
Cited by: 6
Author(s): Katsuaki Nitta, Francesco Del Carratore, Rainer Breitling, Eriko Takano, Sastia Prama Putri, Eiichiro Fukusaki
Software Mentions: 1
Published: over 5 years ago

10.1016/j.celrep.2020.108368

Intramacrophage ROS Primes the Innate Immune System via JAK/STAT and Toll Activation
Cited by: 57
Author(s): Sveta Chakrabarti, Sandhya S. Visweswariah
Software Mentions: 1
Published: over 5 years ago

10.3389/fpubh.2021.653543

Challenges of HIV Self-Test Distribution for Index Testing When HIV Status Disclosure Is Low: Preliminary Results of a Qualitative Study in Bamako (Mali) as Part of the ATLAS Project
Cited by: 7
Author(s): Sokhna Boye, Seydou Bouaré, Odette Ky-Zerbo, Nicolas Rouveau, Arlette Simo Fotso, Marc d’Elbée, Romain Silhol, Mathieu Maheu‐Giroux, Anthony Vautier, G. Breton, Abdelaye Keita, Anne Bekelynck, Alice Desclaux, Joseph Larmarange, Dolorès Pourette
Software Mentions: 1
Published: about 5 years ago

10.7554/eLife.16777

Origins of the 2009 H1N1 influenza pandemic in swine in Mexico
Cited by: 220
Author(s): Ignacio Mena, Martha I. Nelson, Francisco Quezada-Monroy, Jayeeta Dutta, Refugio Cortes-Fernández, J Horacio Lara-Puente, Felipa Castro-Peralta, Luis F. Cunha, Nídia Sequeira Trovão, Bernardo Lozano-Dubernard, Andrew Rambaut, Harm van Bakel, Adolfo Garcı́a-Sastre
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pntd.0007053

A longitudinal systems immunologic investigation of acute Zika virus infection in an individual infected while traveling to Caracas, Venezuela
Cited by: 5
Author(s): Aaron F. Carlin, Jianping Wen, Edward A. Vizcarra, Melanie McCauley, Antoine Chaillon, Kevan Akrami, Cheryl Kim, Annie Elong Ngono, Maria Luz Lara-Marquez, Davey M. Smith, Christopher K. Glass, Robert T. Schooley, Chris Benner, Sujan Shresta
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pgen.1008744

Coordinate genomic association of transcription factors controlled by an imported quorum sensing peptide in Cryptococcus neoformans
Cited by: 9
Author(s): Diana Summers, Daniela S. Perry, Beiduo Rao, Hiten D. Madhani
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-021-90510-1

Human induced pluripotent stem cell derived hepatocytes provide insights on parenteral nutrition associated cholestasis in the immature liver
Cited by: 4
Author(s): T. Hang Nghiem-Rao, Courtney Pfeifer, Michelle Asuncion, Joshua Nord, Daniel J. Schill, Kirthi Pulakanti, Shailendra B. Patel, Lisa Ann Cirillo, Sridhar Rao
Software Mentions: 1
Published: about 5 years ago

10.1186/s12967-021-02844-z

Expression and regulatory roles of lncRNAs in G-CIMP-low vs G-CIMP-high Glioma: an in-silico analysis
Cited by: 4
Author(s): Indrani Datta, Houtan Noushmehr, Chaya Brodie, Laila Poisson
Software Mentions: 1
Published: about 5 years ago

10.18632/oncotarget.17765

Intra-tumour molecular heterogeneity of clear cell renal cell carcinoma reveals the diversity of the response to targeted therapies using patient-derived xenograft models
Cited by: 17
Author(s): Bo Hong, Yong Yang, Sheng Guo, Shayiremu Duoerkun, Xiaohu Deng, Fan Chen, Shijun Yu, Wubin Qian, Qi-Xiang Li, Qing Li, Kan Gong, Ning Zhang
Software Mentions: 1
Published: about 9 years ago

10.3389/fphys.2017.00849

Members of Bitter Taste Receptor Cluster Tas2r143/Tas2r135/Tas2r126 Are Expressed in the Epithelium of Murine Airways and Other Non-gustatory Tissues
Cited by: 30
Author(s): Shuya Liu, Shun Lu, Rui Xu, Ann Atzberger, Stefan Günther, Nina Wettschureck, Stefan Offermanns
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-021-92529-w

The ATF6β-calreticulin axis promotes neuronal survival under endoplasmic reticulum stress and excitotoxicity
Cited by: 8
Author(s): Dinh Thi Nguyen, Thuong Manh Le, Tsuyoshi Hattori, Mika Takarada-Iemata, Hiroshi Ishii, Jureepon Roboon, Takashi Tamatani, Takayuki Kannon, Kazuyoshi Hosomichi, Atsushi Tajima, Shusuke Taniuchi, Masato Miyake, Seiichi Oyadomari, Takashi Tanaka, Nobuo Kato, Shunsuke Saito, Kazutoshi Mori, Osamu Hori
Software Mentions: 1
Published: about 5 years ago

10.1038/s41437-021-00434-9

On the origin of the widespread self-compatible allotetraploid Capsella bursa-pastoris (Brassicaceae)
Cited by: 7
Author(s): Jörg A. Bachmann, Andrew Tedder, Marco Fracassetti, Kim A. Steige, Clément Lafon‐Placette, Claudia Köhler, Tanja Slotte
Software Mentions: 1
Published: about 5 years ago

10.1002/fsn3.1002

Nutritional potential of wild sorghum: Grain quality of Sudanese wild sorghum genotypes ( Sorghum bicolor L. Moench)
Cited by: 19
Author(s): Tilal Sayed Abdelhalim, Nasrein Mohamed Kamal, Amro B. Hassan
Software Mentions: 1
Published: over 7 years ago

10.3389/fgene.2020.00173

Computational Detection of Known Pathogenic Gene Fusions in a Normal Tissue Database and Implications for Genetic Disease Research
Cited by: 6
Author(s): Gavin R. Oliver, Garrett Jenkinson, Eric W. Klee
Software Mentions: 1
Published: over 6 years ago

10.1186/s12967-021-02837-y

The role of transcriptomic biomarkers of endometrial receptivity in personalized embryo transfer for patients with repeated implantation failure
Cited by: 23
Author(s): Anbang He, Yangyun Zou, Cheng Wan, Jing Zhao, Qiong Zhang, Zhongyuan Yao, Tian Fen, Hong Wu, Xi Huang, Jing Fu, Chunxu Hu, Yue Sun, Lanbo Xiao, Tianli Yang, Zhaojuan Hou, Xin Dong, Sijia Lü, Yanping Li
Software Mentions: 1
Published: about 5 years ago

10.1016/j.celrep.2019.08.057

GEF-H1 Signaling upon Microtubule Destabilization Is Required for Dendritic Cell Activation and Specific Anti-tumor Responses
Cited by: 37
Author(s): Abhishek S. Kashyap, Laura Fernandez-Rodriguez, Yun Zhao, Gianni Monaco, Marcel P. Trefny, Naohiro Yoshida, Kea Martin, Ashwani Sharma, Natacha Olieric, Pankaj Shah, Michal A. Stanczak, Nicole Kirchhammer, Sung-Moo Park, Sébastien Wieckowski, Heinz Läubli, Rachid Zagani, Benjamin Kasenda, Michel O. Steinmetz, Hans Christian Reinecker, Alfred Zippelius
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-021-91358-1

Neoantigens elicit T cell responses in breast cancer
Cited by: 13
Author(s): Takafumi Morisaki, Makoto Kubo, Masayo Umebayashi, Poh Yin Yew, Satoshi Yoshimura, Jae-Hyun Park, Kazuma Kiyotani, Masaya Kai, Mai Yamada, Yoshinao Oda, T. Morisaki, Masafumi Nakamura
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-021-93180-1

Florigen governs shoot regeneration
Cited by: 4
Author(s): Yaarit Kutsher, Michal Fisler, Adi Faigenboim, Moshe Reuveni
Software Mentions: 1
Published: about 5 years ago

10.1186/s12967-021-03041-8

Platelet transcriptome profiles provide potential therapeutic targets for elderly acute myelocytic leukemia patients
Cited by: 2
Author(s): Bao Ji-zhang, Xinhua Zhao, Jiahui Lü, Zhaoyang Hu, Minghui Hu, Xiaoxia Hu, Libing Wang, Qi Hu, Wei Sun, Jie Wang, Hailin Chen, Hao Lü, Changgui Li, Jianing Xu, Yongming Zhou, Weiliang Zhu
Software Mentions: 1
Published: almost 5 years ago

10.3390/cells10092313

The Endothelial Landscape and Its Role in Von Hippel–Lindau Disease
Cited by: 5
Author(s): Isabel de Rojas-P, Virginia Albiñana, Lyudmyla Taranets, Lucía Recio-Poveda, Ángel M. Cuesta, Nikita Popov, Thales Kronenberger, Luisa María Botella
Software Mentions: 1
Published: almost 5 years ago

10.3389/fgene.2021.700469

Identification of Candidate Genes Regulating the Seed Coat Color Trait in Sesame (Sesamum indicum L.) Using an Integrated Approach of QTL Mapping and Transcriptome Analysis
Cited by: 8
Author(s): Chun Li, Yinghui Duan, Hongmei Miao, Ming Jun, Libin Wei, Haiyang Zhang
Software Mentions: 1
Published: almost 5 years ago

10.1002/jbm4.10071

MicroRNA‐138 Inhibits Osteogenic Differentiation and Mineralization of Human Dedifferentiated Chondrocytes by Regulating RhoC and the Actin Cytoskeleton
Cited by: 17
Author(s): Hongjun Zhang, David Ramnaraign, Britta A. Anderson, Eric Tycksen, Ryan M. Nunley, Audrey McAlinden
Software Mentions: 1
Published: almost 8 years ago

10.7554/eLife.67452

SIRT1 regulates sphingolipid metabolism and neural differentiation of mouse embryonic stem cells through c-Myc-SMPDL3B
Cited by: 16
Author(s): Wei Fan, Shuāng Táng, Xiaojuan Fan, Yi Fang, Xiaojiang Xu, Leping Li, Jian Xu, Jianliang Li, Zefeng Wang, Xiaoling Li
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pgen.1003714

A Shift to Organismal Stress Resistance in Programmed Cell Death Mutants
Cited by: 36
Author(s): Meredith E. Judy, Ayumi Nakamura, Anne Huang, Harli Grant, Helen McCurdy, Kurt F. Weiberth, Fuying Gao, Giovanni Coppola, Cynthia Kenyon, Aimee W. Kao
Software Mentions: 1
Published: almost 13 years ago

10.3390/cells9102175

Integrated Transcriptome and Proteome Analyses Reveal the Regulatory Role of miR-146a in Human Limbal Epithelium via Notch Signaling
Cited by: 11
Author(s): Adam J. Poe, Mangesh Kulkarni, Aleksandra Leszczynska, Jie Tang, Ruchi Shah, Yasaman Jami‐Alahmadi, Jason Wang, Andrei A. Kramerov, Vasu Punj, Alexander V. Ljubimov, Mehrnoosh Saghizadeh
Software Mentions: 1
Published: almost 6 years ago

10.3389/fphys.2015.00274

RNA-seq analysis of glycosylation related gene expression in STZ-induced diabetic rat kidney inner medulla
Cited by: 15
Author(s): Xiaoqian Qian, Xuechen Li, Titilayo O. Ilori, Janet D. Klein, Rebecca P. Hughey, Congjun Li, Abdel A. Alli, Zhengyu Guo, Peng Yu, Xiang Song, Guangping Chen
Software Mentions: 1
Published: almost 11 years ago

10.1186/s12967-018-1495-6

Limited utility of tissue micro-arrays in detecting intra-tumoral heterogeneity in stem cell characteristics and tumor progression markers in breast cancer
Cited by: 14
Author(s): Pascale Kündig, Charlotte Giesen, Hartland W. Jackson, Bernd Bodenmiller, Bärbel Papassotirolopus, Sandra N. Freiberger, Catharine Aquino, Lennart Opitz, Zsuzsanna Varga
Software Mentions: 1
Published: about 8 years ago

10.7554/eLife.27891

ME31B globally represses maternal mRNAs by two distinct mechanisms during the Drosophila maternal-to-zygotic transition
Cited by: 51
Author(s): Miranda Wang, Michael Ly, Andrew Lugowski, John Laver, Howard D. Lipshitz, Craig Smibert, Olivia S. Rissland
Software Mentions: 1
Published: almost 9 years ago

10.1093/gigascience/giy092

Hot-starting software containers for STAR aligner
Cited by: 8
Author(s): Pai Zhang, Ling‐Hong Hung, Wes Lloyd, Ka Yee Yeung
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pgen.1008460

A missense mutation in SNRPE linked to non-syndromal microcephaly interferes with U snRNP assembly and pre-mRNA splicing
Cited by: 17
Author(s): Tao Chen, Bin Zhang, Thomas Ziegenhals, Archana Bairavasundaram Prusty, Sebastian Fröhler, Clemens Grimm, Yuhui Hu, Bernhard Schaefke, Liang Fang, Min Zhang, Nadine Kraemer, Angela M. Kaindl, Utz Fischer, Wei Chen
Software Mentions: 1
Published: over 6 years ago

10.7554/eLife.60259

Caenorhabditis elegans methionine/S-adenosylmethionine cycle activity is sensed and adjusted by a nuclear hormone receptor
Cited by: 33
Author(s): Gabrielle E. Giese, Melissa Walker, Olga Ponomarova, Hefei Zhang, Xuhang Li, Gregory Minevich, Albertha J.M. Walhout
Software Mentions: 1
Published: almost 6 years ago

10.1016/j.celrep.2021.108756

Itaconate confers tolerance to late NLRP3 inflammasome activation
Cited by: 85
Author(s): Monika Bambousková, Lucie Potůčková, Tomáš Paulenda, Martina Kerndl, Denis A. Mogilenko, Kate Lizotte, Amanda Swain, Sebastian Hayes, Ryan D. Sheldon, Hyeryun Kim, Unnati Kapadnis, Abigail E. Ellis, Christine Isaguirre, Samantha Burdess, Anwesha Laha, Gaya K. Amarasinghe, Victor Chubukov, Thomas P. Roddy, Michael S. Diamond, Russell G. Jones, Donald M. Simons, Maxim N. Artyomov
Software Mentions: 1
Published: over 5 years ago

10.18632/oncotarget.27570

A 3D biofabricated cutaneous squamous cell carcinoma tissue model with multi-channel confocal microscopy imaging biomarkers to quantify antitumor effects of chemotherapeutics in tissue
Cited by: 15
Author(s): James Browning, Paige Derr, Kristy Derr, Nicole Doudican, Sam Michael, Samantha R. Lish, Nicholas A. Taylor, James G. Krueger, Marc Ferrer, John A. Carucci, Daniel S. Gareau
Software Mentions: 1
Published: almost 6 years ago

10.3390/jpm10020040

The CFTR Mutation c.3453G > C (D1152H) Confers an Anion Selectivity Defect in Primary Airway Tissue that Can be Rescued by Ivacaftor
Cited by: 21
Author(s): Onofrio Laselva, Theo J. Moraes, Gengming He, Claire Bartlett, Ida Szàrics, Hong Ouyang, Tarini Gunawardena, Lisa J. Strug, Christine E. Bear, Tanja Gonska
Software Mentions: 1
Published: about 6 years ago

10.7554/eLife.67399

Loss of Tsc1 in cerebellar Purkinje cells induces transcriptional and translation changes in FMRP target transcripts
Cited by: 9
Author(s): Jasbir S. Dalal, Kellen D. Winden, Catherine L. Salussolia, Maria Sundberg, Achint K. Singh, Truc Pham, Pingzhu Zhou, William T. Pu, Meghan T. Miller, Mustafa Şahin
Software Mentions: 1
Published: almost 5 years ago

10.3390/cells10020399

Aldehyde Dehydrogenase, a Therapeutic Target in Chordoma: Analysis in 3D Cellular Models
Cited by: 4
Author(s): Marie-Anaïs Locquet, Anne-Lise Dechaume, Paul Berchard, Lhorra Abbes, Daniel Pissaloux, Franck Tirode, Inês Ramos, Julie Bedoucha, Julie Valantin, Marie Karanian, Raul Perret, Olivier Gille, Jean‐Yves Blay, Aurélie Dutour
Software Mentions: 1
Published: over 5 years ago

10.18632/oncotarget.22165

Super enhancer associated RAI14 is a new potential biomarker in lung adenocarcinoma
Cited by: 14
Author(s): Chongze Yuan, Hong Hu, Muyu Kuang, Zongwei Chen, Xiaoting Tao, Shengjian Fang, Yihua Sun, Yawei Zhang, Hai Quan Chen
Software Mentions: 1
Published: over 8 years ago

10.3389/fphys.2020.01003

Possible Assessment of Calf Venous Pump Efficiency by Computational Fluid Dynamics Approach
Cited by: 2
Author(s): Gianni Niccolini, A. Manuello, Antonio Capone, Giuseppe Marongiu, A Dell'Osa, Andrea Fois, Fernanda Velluzzi, Alberto Concu
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-021-95630-2

Transcriptomic, proteomic, and metabolomic analyses identify candidate pathways linking maternal cadmium exposure to altered neurodevelopment and behavior
Cited by: 11
Author(s): Kathleen M Hudson, Emily Shiver, Jianshi Yu, Sanya Mehta, Dereje D. Jima, Maureen A. Kane, Heather B. Patisaul, Michael Cowley
Software Mentions: 1
Published: almost 5 years ago

10.1016/j.celrep.2020.01.099

Type I Interferons Suppress Anti-parasitic Immunity and Can Be Targeted to Improve Treatment of Visceral Leishmaniasis
Cited by: 29
Author(s): Rajiv Kumar, Patrick T. Bunn, Siddharth Singh, Susanna S. Ng, Marcela Montes de, Fabian de Labastida Rivera, S. V. S. Chauhan, Neetu Singh, Rebecca J. Faleiro, Chelsea L. Edwards, Teija C.M. Frame, Meru Sheel, Rebecca Austin, Steven Lane, Tobias Bald, Mark J. Smyth, Geoffrey R. Hill, Shannon E. Best, Ashraful Haque, Dillon Corvino, Nic Waddell, Lambross Koufariotis, Pamela Mukhopadhay, Madhukar Rai, Jaya Chakravarty, O. P. Singh, David L. Sacks, Susanne Nylén, Jude Uzonna, Christian Engwerda
Software Mentions: 1
Published: over 6 years ago

10.7554/eLife.54995

A non-canonical role for the EDC4 decapping factor in regulating MARF1-mediated mRNA decay
Cited by: 10
Author(s): Steven C. Hebert, Claudia L. Kleinman, Marc R. Fabian
Software Mentions: 1
Published: about 6 years ago

10.1016/j.celrep.2019.05.095

Small Extracellular Vesicles Are Key Regulators of Non-cell Autonomous Intercellular Communication in Senescence via the Interferon Protein IFITM3
Cited by: 169
Author(s): Michela Borghesan, Juan Fafián-Labora, Olga Eleftheriadou, Paula Carpintero-Fernández, Marta Pàez-Ribes, Gema Vizcay‐Barrena, Avital Swisa, Dror Kolodkin-Gal, Pilar Ximénez-Embún, Robert Lowe, Belén Martı́n-Martı́n, Héctor Peinado, Javier Muñoz, Roland A. Fleck, Yuval Dor, Ittai Ben-Porath, Anna Vossenkämper, Daniel Muñoz‐Espín, Ana O’Loghlen
Software Mentions: 1
Published: about 7 years ago

10.1016/j.celrep.2016.12.002

A SLM2 Feedback Pathway Controls Cortical Network Activity and Mouse Behavior
Cited by: 20
Author(s): Ingrid Ehrmann, Matthew R. Gazzara, Vittoria Pagliarini, Caroline Dalgliesh, Mahsa Kheirollahi-Chadegani, Yaobo Xu, E. Cesari, Marina Danilenko, Marie Maclennan, Kate Lowdon, Tanja Vogel, Piia Keskivali-Bond, Sara Wells, Heather Cater, Philippe Fort, Mauro Santibanez‐Koref, Silvia Middei, Claudio Sette, Gavin J. Clowry, Yoseph Barash, Mark O. Cunningham, David J. Elliott
Software Mentions: 1
Published: over 9 years ago

10.1038/s41438-019-0142-6

Updated annotation of the wild strawberry Fragaria vesca V4 genome
Cited by: 85
Author(s): Yongping Li, Mengting Pi, Qi Gao, Zhongchi Liu, Chunying Kang
Software Mentions: 1
Published: about 7 years ago

10.18632/oncotarget.22883

Differential regulation of the androgen receptor by protein phosphatase regulatory subunits
Cited by: 11
Author(s): James Grey, Dominic Jones, Laura Wilson, Sirintra Nakjang, Jake Clayton, Richard Temperley, Emma Clark, Luke Gaughan, Craig Robson
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-021-97087-9

Dectin-2 mediates phagocytosis of Lactobacillus paracasei KW3110 and IL-10 production by macrophages
Cited by: 7
Author(s): Mia Yoshikawa, Shoichi Yamada, Miho Sugamata, Osamu Kanauchi, Yuji Morita
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-021-96854-y

Multi-tissue transcriptome analysis of two Begonia species reveals dynamic patterns of evolution in the chalcone synthase gene family
Cited by: 3
Author(s): Katie Emelianova, Andrea Martínez Martínez, Lucia Campos-Domínguez, Catherine Kidner
Software Mentions: 1
Published: almost 5 years ago

10.3389/fphys.2018.00597

Characterization of an Atypical Metalloproteinase Inhibitors Like Protein (Sbp8-1) From Scallop Byssus
Cited by: 9
Author(s): Xiaokang Zhang, Xiaoting Dai, Lulu Wang, Yanqing Miao, Pingping Xu, Pengyu Liang, Bo Dong, Zhenmin Bao, Shi Wang, Qianqian Lyu, Weizhi Liu
Software Mentions: 1
Published: about 8 years ago

10.3390/cells10092306

Overexpression of Msx1 in Mouse Lung Leads to Loss of Pulmonary Vessels Following Vascular Hypoxic Injury
Cited by: 0
Author(s): James West, Anandharajan Rathinasabapathy, Xinping Chen, Sheila Shay, Shanti Gladson, Megha Talati
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41438-021-00613-z

An ancient whole-genome duplication event and its contribution to flavor compounds in the tea plant (Camellia sinensis)
Cited by: 22
Author(s): Ya Wang, Fei Chen, Yuanchun Ma, Taikui Zhang, Pengchuan Sun, Mei-Fang Lan, Fang Li, Wanping Fang
Software Mentions: 1
Published: almost 5 years ago

10.3390/cells10061356

Continuous Inflammatory Stimulation Leads via Metabolic Plasticity to a Prometastatic Phenotype in Triple-Negative Breast Cancer Cells
Cited by: 4
Author(s): Dina Morein, Linor Rubinstein-Achiasaf, Hadar Brayer, Orly Dorot, Edward Pichinuk, Hagar Ben-Yaakov, Tsipi Meshel, Metsada Pasmanik‐Chor, Adit Ben‐Baruch
Software Mentions: 1
Published: about 5 years ago

10.7554/eLife.37527

Species-specific maturation profiles of human, chimpanzee and bonobo neural cells
Cited by: 84
Author(s): Maria C. Marchetto, Branka Hrvoj-Mihić, Bilal E. Kerman, Diana Yu, Krishna C. Vadodaria, Sara B. Linker, Iñigo Narvaiza, Renata Santos, Ahmet M. Denli, Ana Cristina Mendes, Ruth Oefner, Jonathan Cook, Lauren McHenry, Jaeson Michael Grasmick, Kelly J. Heard, Callie Fredlender, Lynne Randolph‐Moore, Rijul S. Kshirsagar, Rea Xenitopoulos, Grace Chou, Nasun Hah, Alysson R. Muotri, Krishnan Padmanabhan, Katerina Semendeferi, Fred H. Gage
Software Mentions: 1
Published: over 7 years ago

10.1093/gigascience/giz019

De novo genome assembly of the white-spotted flower chafer (Protaetia brevitarsis)
Cited by: 25
Author(s): Kui Wang, Pengpeng Li, Yongyang Gao, Chunqin Liu, Qinglei Wang, Jing Yin, Jie Zhang, Geng Li, Changlong Shu
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0251107

Statistical inconsistency of the unrooted minimize deep coalescence criterion
Cited by: 1
Author(s): Ayed A. R. Alanzi, J.H. Degnan
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pgen.1007206

Deep sequencing of HBV pre-S region reveals high heterogeneity of HBV genotypes and associations of word pattern frequencies with HCC
Cited by: 7
Author(s): Xin Bai, Ji An An Jia, Meng Fang, Shipeng Chen, Xiaotao Liang, Shanfeng Zhu, Shuqin Zhang, Jianfeng Feng, Fengzhu Sun, Chunfang Gao
Software Mentions: 1
Published: over 8 years ago

10.3389/fgene.2020.600378

Silencing of an Ubiquitin Ligase Increases Grain Width and Weight in indica Rice
Cited by: 9
Author(s): Ankit Verma, Geeta Prakash, Rajeev Ranjan, Akhilesh K. Tyagi, Pinky Agarwal
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0222512

HaTSPiL: A modular pipeline for high-throughput sequencing data analysis
Cited by: 4
Author(s): Edoardo Morandi, Matteo Cereda, Danny Incarnato, Caterina Parlato, Giulia Basile, Francesca Anselmi, Andrea Lauria, Lisa Marie Simon, Isabelle Laurence Polignano, Francesca Arruga, Silvia Deaglio, Elisa Tirtei, Franca Fagioli, Salvatore Oliviero
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0184365

Characterization of the microDNA through the response to chemotherapeutics in lymphoblastoid cell lines
Cited by: 30
Author(s): Pamela Mehanna, Vincent Gagné, Mathieu Lajoie, Jean-François Spinella, Pascal St-Onge, Daniel Sinnett, Ivan Brukner, Maja Krajinović
Software Mentions: 1
Published: almost 9 years ago

10.1172/jci.insight.142560

Tumor genotype, location, and malignant potential shape the immunogenicity of primary untreated gastrointestinal stromal tumors
Cited by: 10
Author(s): Daniela Gasparotto, Marta Sbaraglia, Sabrina Rossi, Davide Baldazzi, Monica Brenca, Alessia Mondello, Federica Nardi, Dominga Racanelli, Matilde Cacciatore, Angelo Paolo Dei Tos, Roberta Maestro
Software Mentions: 1
Published: over 5 years ago

10.7554/eLife.28768

Differential requirements of androgen receptor in luminal progenitors during prostate regeneration and tumor initiation
Cited by: 26
Author(s): Chee Wai Chua, Nusrat J Epsi, Eva Leung, Shouhong Xuan, Ming Lei, Bo I Li, Sarah K. Bergren, Hanina Hibshoosh, Antonina Mitrofanova, Michael M. Shen
Software Mentions: 1
Published: over 8 years ago

10.18632/oncotarget.28021

Actionability evaluation of biliary tract cancer by genome transcriptome analysis and Asian cancer knowledgebase
Cited by: 4
Author(s): Yuki Okawa, Nobutaka Ebata, Nayoung K.D. Kim, Masashi Fujita, Kazuhiro Maejima, Shota Sasagawa, Tõru Nakamura, Woong-Yang Park, Satoshi Hirano, Hidewaki Nakagawa
Software Mentions: 1
Published: almost 5 years ago

10.1155/2017/5202913

Genetic Variability of Exotic Sugarcane Genotypes
Cited by: 6
Author(s): M. N. Alam, Ujjal Kumar Nath, K. M. Rezaul Karim, Mostak Ahmed, R. Y. Mitul
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0213177

Drosophila melanogaster tPlus3a and tPlus3b ensure full male fertility by regulating transcription of Y-chromosomal, seminal fluid, and heat shock genes
Cited by: 2
Author(s): Tim Hundertmark, Sabrina Kreutz, Nastasja Merle, Andrea Nist, Boris Lamp, Thorsten Stiewe, Alexander Brehm, Renate Renkawitz‐Pohl, Christina Rathke
Software Mentions: 1
Published: over 7 years ago

10.3390/s140813759

Confronting Passive and Active Sensors with Non-Gaussian Statistics
Cited by: 34
Author(s): Pablo Rodríguez‐Gonzálvez, Jesús García-Gago, Javier Gómez-Lahoz, Diego González‐Aguilera
Software Mentions: 1
Published: almost 12 years ago

10.3389/fphys.2018.01426

Twist1-Haploinsufficiency Selectively Enhances the Osteoskeletal Capacity of Mesoderm-Derived Parietal Bone Through Downregulation of Fgf23
Cited by: 9
Author(s): Natalina Quarto, Siny Shailendra, Nathaniel P. Meyer, Siddharth Menon, Andrea Renda, Michael T. Longaker
Software Mentions: 1
Published: over 7 years ago

10.3390/s16122168

A Modified Magnetic Gradient Contraction Based Method for Ferromagnetic Target Localization
Cited by: 25
Author(s): Chen Wang, Xiaojuan Zhang, Xiaodong Qu, Xiaoqing Pan, Guangyou Fang, Luzhao Chen
Software Mentions: 1
Published: over 9 years ago

10.3390/s19183861

Superpixel-Based Temporally Aligned Representation for Video-Based Person Re-Identification
Cited by: 4
Author(s): Changxin Gao, Jin Wang, Leyuan Liu, Jin-Gang Yu, Nong Sang
Software Mentions: 1
Published: almost 7 years ago

10.18632/oncotarget.23641

Transcriptomes define distinct subgroups of salivary gland adenoid cystic carcinoma with different driver mutations and outcomes
Cited by: 33
Author(s): Candace A. Frerich, Kathryn J. Brayer, Brandon Painter, Huining Kang, Yoshitsugu Mitani, Adel K. El‐Naggar, Scott A. Ness
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pgen.1009320

Lhx6 regulates canonical Wnt signaling to control the fate of mesenchymal progenitor cells during mouse molar root patterning
Cited by: 8
Author(s): Jinzhi He, Junjun Jing, Jifan Feng, Xia Han, Yuan Yuan, Tingwei Guo, Fei Pei, Yuanyuan Ma, Courtney Cho, Thach-Vu Ho, Yang Chai
Software Mentions: 1
Published: over 5 years ago

10.3390/cells8050461

The Reduced Level of Inorganic Polyphosphate Mobilizes Antioxidant and Manganese-Resistance Systems in Saccharomyces cerevisiae
Cited by: 16
Author(s): L. V. Trilisenko, Anton Zvonarev, Airat Valiakhmetov, Aleksey A. Penin, Irina A. Eliseeva, V. G. Ostroumov, Ivan V. Kulakovskiy, T. V. Kulakovskaya
Software Mentions: 1
Published: about 7 years ago

10.3389/fphys.2018.00817

Age-Related Differential Structural and Transcriptomic Responses in the Hypertensive Heart
Cited by: 6
Author(s): Francine Z. Marques, Po‐Yin Chu, Mark Ziemann, Antony Kaspi, Helen Kiriazis, Xiao Jun Du, Assam El‐Osta, David M. Kaye
Software Mentions: 1
Published: almost 8 years ago

Projects: cran: STAR

Science Score: 100/100

Bonuses:

Papers Mentioning STAR 5,759