10.1186/s13059-015-0608-2

Transcript and protein expression decoupling reveals RNA binding proteins and miRNAs as potential modulators of human aging
Cited by: 66
Author(s): Yuning Wei, Hai Hu, Gangcai Xie, Ning Fu, Zhibin Ning, Rong Zeng, Philipp Khaitovich
Software Mentions: 1
Published: over 11 years ago

10.1186/s13059-014-0451-x

Cfp1 is required for gene expression-dependent H3K4 trimethylation and H3K9 acetylation in embryonic stem cells
Cited by: 44
Author(s): Thomas Clouaire, Shaun Webb, Adrian Bird
Software Mentions: 1
Published: about 12 years ago

10.1016/j.dib.2021.107130

Human Chr18 transcriptome dataset combined from the Illumina HiSeq, ONT MinION, and qPCR data
Cited by: 2
Author(s): George S. Krasnov, Timur Shkrigunov, Sergey P. Radko, K. G. Ptitsyn, Valeriya V. Shapovalova, О.С. Тимошенко, Svetlana A. Khmeleva, Л. К. Курбатов, Y. Y. Kiseleva, Ekaterina V. Ilgisonis, Olga I. Kiseleva, И. В. Вахрушев, А. В. Цветкова, I.V. Buromski, С. С. Маркин, Alexander I. Archakov, Andrey Lisitsa, Elena Ponomarenko
Software Mentions: 1
Published: over 5 years ago

10.3390/cancers13081908

Activation of Cilia-Independent Hedgehog/GLI1 Signaling as a Novel Concept for Neuroblastoma Therapy
Cited by: 6
Author(s): Anke Koeniger, Anna Brichkina, Iris Nee, Lukas Dempwolff, Anna Hupfer, Ilya Galperin, Florian Finkernagel, Andrea Nist, Thorsten Stiewe, Till Adhikary, Wibke E. Diederich, Matthias Lauth
Software Mentions: 1
Published: over 5 years ago

10.1242/dmm.040782

Targeted knockout of GABA receptor gamma 2 subunit provokes transient light-induced reflex seizures in zebrafish larvae
Cited by: 24
Author(s): Meijiang Liao, Uday Praful Kundap, Richard Rosch, Dominic R. W. Burrows, Martin P. Meyer, Bouchra Ouled Amar Bencheikh, Patrick Cossette, Éric Samarut
Software Mentions: 1
Published: over 7 years ago

10.1016/j.jhepr.2021.100281

A human liver chimeric mouse model for non-alcoholic fatty liver disease
Cited by: 23
Author(s): Beatrice Bissig-Choisat, Michèle Auger, Barry Zorman, Scott A. Ochsner, Mercedes Barzi, Xavier Legras, Diane Yang, Malgorzata Borowiak, Adam Dean, Robert Brian York, Nhu Thao Nguyen Galván, John A. Goss, William R. Lagor, David D. Moore, David E. Cohen, Neil J. McKenna, Pavel Sumazin, Karl‐Dimiter Bissig
Software Mentions: 1
Published: over 5 years ago

10.1186/s13045-017-0515-y

Transcriptome sequencing in pediatric acute lymphoblastic leukemia identifies fusion genes associated with distinct DNA methylation profiles
Cited by: 32
Author(s): Yanara Marincevic-Zuniga, Johan Dahlberg, Stefan Nilsson, Amanda Raine, Sara Nystedt, Carl Mårten Lindqvist, Eva Berglund, Jonas Abrahamsson, Lucia Cavelier, Erik Forestier, Mats Heyman, Gudmar Lönnerholm, Jessica Nordlund, Ann‐Christine Syvänen
Software Mentions: 1
Published: about 9 years ago

10.1242/dmm.026104

From integrative genomics to systems genetics in the rat to link genotypes to phenotypes
Cited by: 25
Author(s): Aida Moreno‐Moral, Enrico Petretto
Software Mentions: 1
Published: almost 10 years ago

10.1186/s13045-020-00974-3

The altered transcriptome of pediatric myelodysplastic syndrome revealed by RNA sequencing
Cited by: 3
Author(s): Lorena Zubović, Silvano Piazza, Toma Tebaldi, Luca Cozzuto, Giuliana Palazzo, Viktoryia Sidarovich, Veronica De Sanctis, Roberto Bertorelli, Tim Lammens, Mattias Hofmans, Barbara De Moerloose, Julia Ponomarenko, Martina Pigazzi, Riccardo Masetti, Cristina Mecucci, Giuseppe Basso, Paolo Macchi
Software Mentions: 1
Published: almost 6 years ago

10.3390/vaccines9070800

Mutation E48K in PB1 Polymerase Subunit Improves Stability of a Candidate Live Attenuated Influenza B Virus Vaccine
Cited by: 3
Author(s): Jong-Suk Mo, Stivalis Cárdenas-García, Jefferson Santos, Lucas Ferreri, C. Joaquín Cáceres, Ginger Geiger, Daniel R. Pérez, Daniela S. Rajão
Software Mentions: 1
Published: about 5 years ago

10.1186/s13045-021-01072-8

CLK1/SRSF5 pathway induces aberrant exon skipping of METTL14 and Cyclin L2 and promotes growth and metastasis of pancreatic cancer
Cited by: 42
Author(s): Shi Chen, Can Yang, Zuwei Wang, Jianfei Hu, Jingjing Pan, Cheng-Yu Liao, Jiaqiang Zhang, Jiang-Zhi Chen, Yi Huang, Long Huang, Qimin Zhan, Yuan Tian, Baiyong Shen, Yaodong Wang
Software Mentions: 1
Published: over 5 years ago

10.1016/j.ijpara.2016.03.004

Identification of new markers for the Schistosoma mansoni vitelline lineage
Cited by: 53
Author(s): Jipeng Wang, James J. Collins
Software Mentions: 1
Published: over 10 years ago

10.1186/gb-2013-14-9-r107

Genome sequencing reveals fine scale diversification and reticulation history during speciation in Sus
Cited by: 132
Author(s): Laurent Frantz, Joshua G. Schraiber, Ole Madsen, Hendrik‐Jan Megens, Mirte Bosse, Yogesh Paudel, Gono Semiadi, Erik Meijaard, Ning Li, R.P.M.A. Crooijmans, Alan Archibald, Montgomery Slatkin, Lawrence B. Schook, Greger Larson, Martien A. M. Groenen
Software Mentions: 1
Published: over 13 years ago

10.1016/j.cell.2016.06.020

Genetic Codes with No Dedicated Stop Codon: Context-Dependent Translation Termination
Cited by: 132
Author(s): Estienne C. Swart, Valentina Serra, Giulio Petroni, Mariusz Nowacki
Software Mentions: 1
Published: about 10 years ago

10.1128/genomeA.00321-18

Genome Sequence of Australian Indigenous Wine Yeast Torulaspora delbrueckii COFT1 Using Nanopore Sequencing
Cited by: 10
Author(s): Federico Tondini, Vladimir Jiranek, Paul R. Grbin, Cristóbal A. Onetto
Software Mentions: 1
Published: over 8 years ago

10.4049/jimmunol.2000372

Zebrafish IL-4–like Cytokines and IL-10 Suppress Inflammation but Only IL-10 Is Essential for Gill Homeostasis
Cited by: 27
Author(s): Federica Bottiglione, Christopher Dee, Robert Lea, Leo Zeef, Andrew P. Badrock, Madina Wane, Laurence Bugeon, Margaret J. Dallman, Judith E. Allen, Adam Hurlstone
Software Mentions: 1
Published: about 6 years ago

10.1590/1678-4685-GMB-2019-0215

The combined analysis as the best strategy for Dual RNA-Seq mapping
Cited by: 5
Author(s): Eliandro Espindula, Edilena Reis Sperb, Evelise Bach, Luciane Maria Pereira Passaglia
Software Mentions: 1
Published: over 7 years ago

10.9734/INDJ/2016/26203

Examining the Impact of Patient-Reported Hope for Improvement and Patient Satisfaction with Clinician/Treatment on the Outcome of Major Depressive Disorder Treatment
Cited by: 1
Author(s): Waguih William IsHak, Jennice Vilhauer, Richard Kwock, Fan Wu, Sherif H. Gohar, Katherine L. Collison, Sasha Thomas, Lancer Naghdechi, David Elashoff
Software Mentions: 1
Published: over 10 years ago

10.1167/iovs.19-26930

IPSC-Derived Corneal Endothelial-like Cells Act as an Appropriate Model System to Assess the Impact of <i>SLC4A11</i> Variants on Pre-mRNA Splicing
Cited by: 12
Author(s): Kristýna Brejchová, Ľubica Ďuďáková, Pavlína Skalická, Robert Dobrovolný, Petr Mašek, Martina Putzová, Mariya Moosajee, Stephen Tuft, Alice E. Davidson, Petra Lišková
Software Mentions: 1
Published: about 7 years ago

10.1186/s40814-017-0182-3

Pilot parallel randomised controlled trial of protective socks against usual care to reduce skin tears in high risk people: ‘STOPCUTS’
Cited by: 4
Author(s): Roy Powell, Christopher Hayward, Caroline L. Snelgrove, Kathleen Polverino, Linda Park, Rajeev Kumar Chauhan, Philip Evans, Rachel Byford, Carolyn Charman, Christopher Foy, Colin Pritchard, Andrew Kingsley
Software Mentions: 1
Published: almost 9 years ago

10.1242/dmm.030056

Generation of a double binary transgenic zebrafish model to study myeloid gene regulation in response to oncogene activation in melanocytes
Cited by: 12
Author(s): Amy Kenyon, Daria Gavriouchkina, Jernej Zorman, Vanessa Chong, Giorgio Napolitani, Vincenzo Cerundolo, Tatjana Sauka‐Spengler
Software Mentions: 1
Published: over 8 years ago

10.3390/cancers13184515

Transcriptome of Male Breast Cancer Matched with Germline Profiling Reveals Novel Molecular Subtypes with Possible Clinical Relevance
Cited by: 2
Author(s): Veronica Zelli, Valentina Silvestri, Virginia Valentini, Agostino Bucalo, P. Rizzolo, Ines Zanna, Simonetta Bianchi, Anna Coppa, Giuseppe Giannini, Laura Cortesi, Daniele Calistri, Maria Grazia Tibiletti, Stephen B. Fox, kCon Fab, Domenico Palli, Laura Ottini
Software Mentions: 1
Published: about 5 years ago

10.1242/dmm.038513

Mandibular dysmorphology due to abnormal embryonic osteogenesis in FGFR2-related craniosynostosis mice
Cited by: 19
Author(s): Susan M. Motch Perrine, Meng Wu, Nicholas B. Stephens, Divya Kriti, Harm van Bakel, Ethylin Wang Jabs, Joan T. Richtsmeier
Software Mentions: 1
Published: over 7 years ago

10.2196/24724

Business Models of eHealth Interventions to Support Informal Caregivers of People With Dementia in the Netherlands: Analysis of Case Studies
Cited by: 6
Author(s): Hannah Liane Christie, Lizzy Boots, Ivo Hermans, Mark Govers, Huibert Tange, Frans R.J. Verhey, Marjolein E. de Vugt
Software Mentions: 1
Published: over 5 years ago

10.2196/formative.9083

A Web-Based Platform for People With Memory Problems and Their Caregivers (CAREGIVERSPRO-MMD): Mixed-Methods Evaluation of Usability
Cited by: 8
Author(s): Evi Zafeiridi, Kevin Paulson, Rosie Dunn, Emma Wolverson, Caroline White, Jonathan Thorpe, Marco Antomarini, Francesca Cesaroni, Francesca Scocchera, Isabelle Landrin-Dutot, Laëtitia Malherbe, Hendi Lingiah, Marie Bérard, Xavier Gironès, M. Quintana, Ulises Cortés, Cristian Barrué, Àtia Cortés, Ioannis Paliokas, Konstantinos Votis, Dimitrios Tzovaras
Software Mentions: 1
Published: over 8 years ago

10.2196/27736

Nursing Students’ Perceptions about Effective Pedagogy: Netnographic Analysis
Cited by: 4
Author(s): Jennie C. De Gagné, Paula D Koppel, Hyeyoung K Park, Allen Cadavero, Eunji Cho, Sharron Rushton, Sandra S Yamane, Kim Manturuk, Dukyoo Jung
Software Mentions: 1
Published: about 5 years ago

10.3390/ijerph120404076

Community-Based Research as a Mechanism to Reduce Environmental Health Disparities in American Indian and Alaska Native Communities
Cited by: 44
Author(s): Cynthia Agumanu McOliver, Anne K. Camper, John Doyle, Margaret J. Eggers, Tim Ford, Mary Anne Lila, James Berner, Larry Campbell, Jamie Donatuto
Software Mentions: 1
Published: over 11 years ago

10.3390/ijerph15122899

Sistas Taking a Stand for Breast Cancer Research (STAR) Study: A Community-Based Participatory Genetic Research Study to Enhance Participation and Breast Cancer Equity among African American Women in Memphis, TN
Cited by: 7
Author(s): Alana Smith, Gregory A. Vidal, Elizabeth Pritchard, Ryan Blue, Michelle Y. Martin, LaShanta Rice, Gwendolynn Brown, Athena Starlard‐Davenport
Software Mentions: 1
Published: almost 8 years ago

10.3390/ijerph16234730

Distribution of Refractive Errors among Healthy Infants and Young Children between the Age of 6 to 36 Months in Kuala Lumpur, Malaysia—A Pilot Study
Cited by: 7
Author(s): Arifah Nur Yahya, Sharanjeet Sharanjeet-Kaur, Saadah Mohamed Akhir
Software Mentions: 1
Published: almost 7 years ago

10.3390/ijerph17238845

Effects of an Educational Program for Professional Caregivers on Behavioral Alterations in Nursing Home Residents: Pilot Study
Cited by: 4
Author(s): Carolina Pinazo-Clapés, Sacramento Pinazo Hernandis, Alicia Sales
Software Mentions: 1
Published: almost 6 years ago

10.3390/genes12081107

Gene Expression Analysis Provides New Insights into the Mechanism of Intramuscular Fat Formation in Japanese Black Cattle
Cited by: 13
Author(s): Shuji Ueda, Mana Hosoda, Ken‐ichi Yoshino, Minoru Yamanoue, Yasuhito Shirai
Software Mentions: 1
Published: about 5 years ago

10.1242/dmm.040105

Characterization of the human GnRH neuron developmental transcriptome using a <i>GNRH1</i>-TdTomato reporter line in human pluripotent stem cells
Cited by: 17
Author(s): Carina Lund, Venkatram Yellapragada, Sanna Vuoristo, Diego Balboa, Sara Trova, Cécile Allet, Nazli Eskici, Kristiina Pulli, Paolo Giacobini, Timo Tuuri, Taneli Raivio
Software Mentions: 1
Published: over 6 years ago

10.3390/ijerph18158035

Using a 24 h Activity Recall (STAR-24) to Describe Activity in Adolescent Boys in New Zealand: Comparisons between a Sample Collected before, and a Sample Collected during the COVID-19 Lockdown
Cited by: 5
Author(s): Meredith C. Peddie, Tessa Scott, Jillian J. Haszard
Software Mentions: 1
Published: about 5 years ago

10.2196/24736

Examining a Digital Health Approach for Advancing Schizophrenia Illness Self-Management and Provider Engagement: Protocol for a Feasibility Trial
Cited by: 4
Author(s): Sean A. Kidd, Kwame McKenzie, Wei Wang, Sacha Agrawal, Aristotle N. Voineskos
Software Mentions: 1
Published: over 5 years ago

10.1242/dmm.038083

Modelling the MYC-driven normal-to-tumour switch in breast cancer
Cited by: 13
Author(s): Corey Lourenco, Manpreet Kalkat, Kathleen E. Houlahan, Jason De Melo, Joseph Longo, Susan J. Done, Paul C. Boutros, Linda Z. Penn
Software Mentions: 1
Published: about 7 years ago

10.2196/27668

STAR Duodecim eHealth Tool to Recognize Chronic Disease Risk Factors and Change Unhealthy Lifestyle Choices Among the Long-Term Unemployed: Protocol for a Mixed Methods Validation Study
Cited by: 1
Author(s): Henna Kuhlberg, Sari Kujala, Iiris Hörhammer, Tuomas Koskela
Software Mentions: 1
Published: over 5 years ago

10.1186/s40425-019-0621-1

Prognostic impact of immune gene expression signature and tumor infiltrating immune cells in localized clear cell renal cell carcinoma
Cited by: 104
Author(s): Pooja Ghatalia, Jennifer B. Gordetsky, Fengshen Kuo, Essel Dulaimi, Kathy Q. Cai, Karthik Devarajan, Sejong Bae, Gurudatta Naik, Timothy A. Chan, Robert G. Uzzo, A. Ari Hakimi, Guru Sonpavde, Elizabeth R. Plimack
Software Mentions: 1
Published: over 7 years ago

10.3389/fmicb.2020.603509

Differential Expression of Viral Transcripts From Single-Cell RNA Sequencing of Moderate and Severe COVID-19 Patients and Its Implications for Case Severity
Cited by: 30
Author(s): Teng Liu, Peilin Jia, Bingliang Fang, Zhongming Zhao
Software Mentions: 1
Published: almost 6 years ago

10.1186/s40425-019-0796-5

A new synthetic toll-like receptor 1/2 ligand is an efficient adjuvant for peptide vaccination in a human volunteer
Cited by: 33
Author(s): Hans Georg Rammensee, Karl Heinz Wiesmüller, P. Anoop Chandran, Henning Zelba, Elisa Rusch, Cécile Gouttefangeas, Daniel J. Kowalewski, Moreno Di Marco, Sebastian P. Haen, Juliane S. Walz, Yamel Cardona Gloria, Johanna Bödder, Jill Marie Schertel, Antje Tunger, Luise Müller, Maximilian Kießler, Rebekka Wehner, Marc Schmitz, Meike Jakobi, Nicole Schneiderhan‐Marra, Reinhild Klein, Karoline Laske, Kerstin Artzner, Linus Backert, Heiko Schuster, Johannes Schwenck, Alexander N.R. Weber, Bernd J. Pichler, Manfred Kneilling, Christian la Fougère, Stephan Forchhammer, Gisela Metzler, Jürgen Bauer, Benjamin Weide, Wilfried Schippert, Stefan Stevanović, Markus Löffler
Software Mentions: 1
Published: almost 7 years ago

10.1186/s40425-019-0758-y

Immunogenicity of prostate cancer is augmented by BET bromodomain inhibition
Cited by: 49
Author(s): Wendy Mao, Ali Ghasemzadeh, Zachary T. Freeman, Aleksandar Z. Obradovic, Matthew G. Chaimowitz, Thomas R. Nirschl, Emily McKiernan, Srinivasan Yegnasubramanian, Charles G. Drake
Software Mentions: 1
Published: almost 7 years ago

10.3390/diagnostics9040219

A Hierarchical Machine Learning Model to Discover Gleason Grade-Specific Biomarkers in Prostate Cancer
Cited by: 17
Author(s): Osama Hamzeh, Abedalrhman Alkhateeb, Julia Zheng, Srinath Kandalam, Crystal Pui Sha Leung, Govindaraja Atikukke, Dora Cavallo-Medved, Nallasivam Palanisamy, Luis Rueda
Software Mentions: 1
Published: almost 7 years ago

10.1111/pbi.13600

The pan‐genome of the cultivated soybean (PanSoy) reveals an extraordinarily conserved gene content
Cited by: 36
Author(s): Davoud Torkamaneh, Marc‐André Lemay, François Belzile
Software Mentions: 1
Published: over 5 years ago

10.1016/j.dib.2019.104056

Data on production and characterization of melamine-furan-formaldehyde particles and reversible reactions thereof
Cited by: 1
Author(s): Katharina Urdl, Stephanie Weiss, Günter Hesser, Andreas Kandelbauer, Edith Zikulnig-Rusch, Uwe Müller, Wolfgang Kern
Software Mentions: 1
Published: about 7 years ago

10.3389/fmicb.2017.01424

Aspergillus niger Secretes Citrate to Increase Iron Bioavailability
Cited by: 27
Author(s): Dorett I Odoni, Merlijn P van Gaal, Tom Schonewille, Juan Antonio Tamayo-Ramos, Vítor A. P. Martins dos Santos, María Suárez-Diez, Peter J. Schaap
Software Mentions: 1
Published: about 9 years ago

10.1186/s40425-019-0612-2

Discovery of a novel natural killer cell line with distinct immunostimulatory and proliferative potential as an alternative platform for cancer immunotherapy
Cited by: 15
Author(s): Hyun Gul Yang, Moon Cheol Kang, Tae Yoon Kim, Injung Hwang, Hyun Tak Jin, Young Chul Sung, Ki‐Seong Eom, Sae Won Kim
Software Mentions: 1
Published: over 7 years ago

10.3390/cancers13153853

Identification and Functional Characterization of Novel MYC-Regulated Long Noncoding RNAs in Group 3 Medulloblastoma
Cited by: 4
Author(s): Jessica Rea, Annamaria Carissimo, Daniela Trisciuoglio, Barbara Illi, Daniel Picard, Marc Remke, Pietro Laneve, Elisa Caffarelli
Software Mentions: 1
Published: about 5 years ago

10.3389/fmicb.2018.00826

The Algicidal Fungus Trametes versicolor F21a Eliminating Blue Algae via Genes Encoding Degradation Enzymes and Metabolic Pathways Revealed by Transcriptomic Analysis
Cited by: 14
Author(s): Wei Dai, Xiaolin Chen, Xuewen Wang, Zimu Xu, Xueyan Gao, Chaosheng Jiang, Ruining Deng, Guomin Han
Software Mentions: 1
Published: over 8 years ago

10.3389/fmicb.2021.613697

Evaluation of Host Immune Response in Diabetic Foot Infection Tissues Using an RNA Sequencing-Based Approach
Cited by: 3
Author(s): Fatemah Sadeghpour Heravi, Martha Zakrzewski, Hamidreza Aboulkheyr Estarabadi, Karen Vickery, Honghua Hu
Software Mentions: 1
Published: over 5 years ago

10.1186/s13000-021-01138-8

A second hit somatic (p.R905W) and a novel germline intron-mutation of TSC2 gene is found in intestinal lymphangioleiomyomatosis: a case report with literature review
Cited by: 2
Author(s): Bogyeong Han, Juhwan Lee, Yoonjin Kwak, Ho Kim, Kwang Hoon Lee, Yumi Shim, Hyunju Lee, Jong Bae Park
Software Mentions: 1
Published: about 5 years ago

10.3389/fmicb.2019.02168

Global Analysis of Cell Wall Genes Revealed Putative Virulence Factors in the Dermatophyte Trichophyton rubrum
Cited by: 15
Author(s): Maíra Pompeu Martins, Larissa Gomes Silva, Antônio Rossi, Pablo Rodrigo Sanches, Larissa Daniela Ribeiro de Souza, Nilce Maria Martinez-Rossi
Software Mentions: 1
Published: almost 7 years ago

10.1242/dev.193037

Human yolk sac-like haematopoiesis generates <i>RUNX1</i>- and <i>GFI1/1B</i>-dependent blood and <i>SOX17</i>-positive endothelium
Cited by: 14
Author(s): Freya Bruveris, Elizabeth Ng, Ana Rita Leitoguinho, Ali Motazedian, Katerina Vlahos, Koula Sourris, Robyn Mayberry, Penelope McDonald, Lisa Azzola, N. Davidson, Alicia Oshlack, Edouard G. Stanley
Software Mentions: 1
Published: over 6 years ago

10.1186/s12985-019-1137-5

The Epstein-Barr virus EBNA1 protein modulates the alternative splicing of cellular genes
Cited by: 22
Author(s): Simon Boudreault, Victoria E. S. Armero, Michelle S. Scott, Jean‐Pierre Perreault, Martin Bisaillon
Software Mentions: 1
Published: over 7 years ago

10.1038/s41388-020-1161-3

Polycomb-mediated repression of EphrinA5 promotes growth and invasion of glioblastoma
Cited by: 15
Author(s): Barbara Ricci, Thomas O Millner, Nicola Pomella, Xinyu Zhang, Loredana Guglielmi, Sara Badodi, Dario Ceric, Carolina Gemma, Erica Cognolato, Ying Zhang, Sebastian Brandner, Michael R. Barnes, Silvia Marino
Software Mentions: 1
Published: over 6 years ago

10.3390/cancers13174388

The Clinical Utility of Optical Genome Mapping for the Assessment of Genomic Aberrations in Acute Lymphoblastic Leukemia
Cited by: 29
Author(s): Jonathan Lukas Lühmann, Marie Stelter, Marie Wolter, J. McA. Kater, Jana Lentes, Anke Bergmann, Maximilian Schieck, Gudrun Göhring, Anja Möricke, Gunnar Cario, Markéta Žaliová, Martin Schrappe, Brigitte Schlegelberger, Martin Stanulla, Doris Steinemann
Software Mentions: 1
Published: about 5 years ago

10.1038/s41388-020-1349-6

Deoxycholic acid modulates the progression of gallbladder cancer through N6-methyladenosine-dependent microRNA maturation
Cited by: 44
Author(s): Rongfu Lin, Ming Zhan, Linhua Yang, Hui Wang, Hui Shen, Shuai Huang, Xince Huang, Sunwang Xu, Zi-Jie Zhang, Weijian Li, Qiang Liu, Yongsheng Shi, Wei Chen, Jianxiu Yu, Jian Wang
Software Mentions: 1
Published: over 6 years ago

10.3389/fmicb.2021.712564

Overexpression of mqsR in Xylella fastidiosa Leads to a Priming Effect of Cells to Copper Stress Tolerance
Cited by: 3
Author(s): Isis Gabriela Barbosa Carvalho, Marcus V. Merfa, Natália Sousa Teixeira-Silva, Paula Maria Moreira Martins, Marco Aurélio Takita, Alessandra Alves de Souza
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41388-020-01507-5

Genetic alterations of SUGP1 mimic mutant-SF3B1 splice pattern in lung adenocarcinoma and other cancers
Cited by: 11
Author(s): Samar Alsafadi, Stéphane Dayot, Malcy Tarin, Alexandre Houy, Dorine Bellanger, Michele Cornella, Michel Wassef, Joshua J. Waterfall, Erik Lehnert, Sergio Román-Román, Marc‐Henri Stern, Tatiana Popova
Software Mentions: 1
Published: almost 6 years ago

10.3389/fmicb.2020.611080

Cold Adaptation Mechanisms of a Snow Alga Chlamydomonas nivalis During Temperature Fluctuations
Cited by: 7
Author(s): Zhao Peng, Gai Liu, Kaiyao Huang
Software Mentions: 1
Published: over 5 years ago

10.1038/s41388-021-01847-w

Transglutaminase 2 promotes tumorigenicity of colon cancer cells by inactivation of the tumor suppressor p53
Cited by: 12
Author(s): Patrizia Malkomes, Ilaria Lunger, Elsie Oppermann, Khalil Abou-El-Ardat, Thomas Oellerich, Stefan Günther, Can Canbulat, Sabrina Bothur, Frank Schnütgen, Weijia Yu, Susanne Wingert, Nadine Haetscher, Claudia Catapano, Marina S. Dietz, Mike Heilemann, Hans‐Michael Kvasnicka, Katharina Holzer, Hubert Serve, Wolf O. Bechstein, Michael A. Rieger
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2019.01650

The Tsetse Fly Displays an Attenuated Immune Response to Its Secondary Symbiont, Sodalis glossinidius
Cited by: 15
Author(s): Katrien Trappeniers, Irina Matetovici, Jan Van Den Abbeele, Linda De Vooght
Software Mentions: 1
Published: about 7 years ago

10.3389/fmicb.2020.568891

Editorial: MALDI-TOF MS Application for Susceptibility Testing of Microorganisms
Cited by: 4
Author(s): Karsten Becker, Sören Schubert
Software Mentions: 1
Published: almost 6 years ago

10.1038/oncsis.2016.63

GPR133 (ADGRD1), an adhesion G-protein-coupled receptor, is necessary for glioblastoma growth
Cited by: 46
Author(s): N. Sumru Bayın, Joshua D. Frenster, Jason M. Kane, Jordan Rubenstein, Aram S. Modrek, Rabaa Baitalmal, Igor Dolgalev, Katie Rudzenski, Lia Scarabottolo, D. Crespi, Loredana Redaelli, Matija Snuderl, John G. Golfinos, Werner Doyle, Donato Pacione, Erik C. Parker, A S, Adriana Heguy, Douglas J. MacNeil, Nadim Shohdy, David Zagzag, Dimitris G. Placantonakis
Software Mentions: 1
Published: almost 10 years ago

10.3390/cancers12051104

Genetic and Immune Changes Associated with Disease Progression under the Pressure of Oncolytic Therapy in A Neuroblastoma Outlier Patient
Cited by: 11
Author(s): Lidia Franco-Luzón, Sandra García-Mulero, Rebeca Sanz‐Pamplona, Gustavo J. Melén, David Ruano, Álvaro Lassaletta, Luís Madero, África González‐Murillo, Manuel Ramı́rez
Software Mentions: 1
Published: over 6 years ago

10.1016/j.cell.2017.09.042

Universal Patterns of Selection in Cancer and Somatic Tissues
Cited by: 959
Author(s): Iñigo Martincorena, Keiran Raine, Moritz Gerstung, Kevin J. Dawson, Kerstin Haase, Peter Van Loo, Helen Davies, Michael R. Stratton, Peter J. Campbell
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41389-017-0007-5

Prostate-specific PTen deletion in mice activates inflammatory microRNA expression pathways in the epithelium early in hyperplasia development
Cited by: 10
Author(s): Alwyn Dart, Pinar Uysal-Onganer, Wen Guo Jiang
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41389-018-0050-x

Dysregulation of the MiR-449b target TGFBI alters the TGFβ pathway to induce cisplatin resistance in nasopharyngeal carcinoma
Cited by: 32
Author(s): Pierre-Antoine Bissey, Jacqueline H. Law, Jeff Bruce, Wei Shi, Aline Renoult, Melvin L.K. Chua, Kenneth W. Yip, Fei‐Fei Liu
Software Mentions: 1
Published: over 8 years ago

10.3389/fmicb.2019.02305

Microbial Metabolic Capacity for Intestinal Folate Production and Modulation of Host Folate Receptors
Cited by: 81
Author(s): Melinda A. Engevik, Christina N. Morra, Daniel Röth, Kristen A. Engevik, Jennifer K. Spinler, Sridevi Devaraj, Sue E. Crawford, Mary K. Estes, Markus Kalkum, James Versalovic
Software Mentions: 1
Published: almost 7 years ago

10.3389/fnint.2021.652218

Editorial: Sensory Processing Across the Lifespan: A 25-Year Initiative to Understand Neurophysiology, Behaviors, and Treatment Effectiveness for Sensory Processing
Cited by: 4
Author(s): Lucy Miller, Elysa J. Marco, Robyn Chu, Stephen Camarata
Software Mentions: 1
Published: over 5 years ago

10.3390/cancers10100379

Identification of the Transcription Factor Relationships Associated with Androgen Deprivation Therapy Response and Metastatic Progression in Prostate Cancer
Cited by: 16
Author(s): Nikhil Sharma, Kathryn L. Pellegrini, Véronique Ouellet, Felipe Giuste, S. Ramalingam, Kenneth A. Watanabe, Éloïse Adam-Granger, Lucresse Fossouo, Sungyong You, Michael R. Freeman, Paula M. Vertino, Karen N. Conneely, Adeboye O. Osunkoya, Dominique Trudel, Anne‐Marie Mes‐Masson, John A. Petros, Fred Saad, Carlos S. Moreno
Software Mentions: 1
Published: almost 8 years ago

10.3389/fimmu.2021.638469

Subversion of Host Innate Immunity by Rickettsia australis via a Modified Autophagic Response in Macrophages
Cited by: 9
Author(s): Jeremy Bechelli, Claire Smalley Rumfield, David H. Walker, Steven G. Widen, Kamil Khanipov, Rong Fang
Software Mentions: 1
Published: over 5 years ago

10.1002/jia2.25256

To thine own test be true: HIV self‐testing and the global reach for the undiagnosed
Cited by: 25
Author(s): Vincent Wong, Erin Jenkins, Nathan Ford, Heather Ingold
Software Mentions: 1
Published: over 7 years ago

10.1002/jia2.25238

Challenges in measurement of linkage following <scp>HIV</scp> self‐testing: examples from the <scp>STAR</scp> Project
Cited by: 19
Author(s): Melissa Neuman, Miriam Taegtmeyer, Karin Hatzold, Cheryl Johnson, Helen A. Weiss, Katherine Fielding
Software Mentions: 1
Published: over 7 years ago

10.1002/jia2.25091

Multiple strategies to identify HIV-positive black men who have sex with men and transgender women in New York City: a cross-sectional analysis of recruitment results
Cited by: 10
Author(s): Julie Franks, Sharon Mannheimer, Yael Hirsch‐Moverman, Eleanor Hayes‐Larson, Paul W. Colson, Hugo Ortega, Wafaa El‐Sadr
Software Mentions: 1
Published: over 8 years ago

10.1002/jia2.25251

Exploring social harms during distribution of HIV self‐testing kits using mixed‐methods approaches in Malawi
Cited by: 47
Author(s): Moses Kumwenda, Cheryl Johnson, Augustine Choko, Wezzie Lora, Wakumanya Sibande, Doreen Sakala, Pitchaya Indravudh, Richard Chilongosi, R Baggaley, Rose Nyirenda, Miriam Taegtmeyer, Karin Hatzold, Nicola Desmond, Elizabeth L. Corbett
Software Mentions: 1
Published: over 7 years ago

10.3390/cancers13040656

Transcriptomic Analyses of MYCN-Regulated Genes in Anaplastic Wilms’ Tumour Cell Lines Reveals Oncogenic Pathways and Potential Therapeutic Vulnerabilities
Cited by: 3
Author(s): Marianna Szemes, Zsombor Melegh, Jacob Bellamy, Ji Hyun Park, Biyao Chen, Alexander Greenhough, Daniel Catchpoole, Karim Malik
Software Mentions: 1
Published: over 5 years ago

10.3389/fimmu.2021.723196

HCV Cure With Direct-Acting Antivirals Improves Liver and Immunological Markers in HIV/HCV-Coinfected Patients
Cited by: 11
Author(s): Óscar Brochado-Kith, Isidoro Martı́nez, Juan Berenguer, Juan González‐García, Sergio Salgüero, Daniel Sepúlveda‐Crespo, Cristina Díez, Víctor Hontañón, Luis Ibáñez‐Samaniego, Leire Pérez‐Latorre, Amanda Fernández‐Rodríguez, María Ángeles Jiménez-Sousa, Salvador Resino
Software Mentions: 1
Published: about 5 years ago

10.1016/j.cell.2019.10.015

Long-Term Culture Captures Injury-Repair Cycles of Colonic Stem Cells
Cited by: 127
Author(s): Yi Wang, I-Ling Chiang, Thomas O’Hara, Satoru Fujii, Jiye Cheng, Brian D. Muegge, Aaron M. Ver Heul, Nathan D. Han, Qiuhe Lu, Sidong Xiong, Feidi Chen, Chin‐Wen Lai, Hana Jáňová, Renee Wu, Charles E. Whitehurst, Kelli L. VanDussen, Ta‐Chiang Liu, Jeffrey I. Gordon, L. David Sibley, Thaddeus S. Stappenbeck
Software Mentions: 1
Published: almost 7 years ago

10.3389/fimmu.2019.02889

HSV-2 Cellular Programming Enables Productive HIV Infection in Dendritic Cells
Cited by: 7
Author(s): Elisa Crisci, Cecilia Svanberg, Rada Ellegård, Mohammad Khalid, Julia Hellblom, Kazuki Okuyama, Paramita Bhattacharya, Sofia Nyström, Esaki Muthu Shankar, Kristina Eriksson, Marie Larsson
Software Mentions: 1
Published: almost 7 years ago

10.3389/fimmu.2019.03033

Single Eye mRNA-Seq Reveals Normalisation of the Retinal Microglial Transcriptome Following Acute Inflammation
Cited by: 14
Author(s): Oliver H. Bell, David A Copland, Amy Ward, Lindsay B. Nicholson, Clemens Lange, Colin J Chu, Andrew D. Dick
Software Mentions: 1
Published: over 6 years ago

10.3389/fimmu.2021.629391

Small Intestinal Tuft Cell Activity Associates With Energy Metabolism in Diet-Induced Obesity
Cited by: 6
Author(s): Pankaj Arora, Daniel S. Andersen, Janne Marie Moll, Niels Banhos Danneskiold‐Samsøe, Liqin Xu, Biaofeng Zhou, Georgios Kladis, Philipp Rausch, Christopher T. Workman, Karsten Kristiansen, Susanne Brix
Software Mentions: 1
Published: over 5 years ago

10.3389/fimmu.2019.00455

The Concerted Action of E2-2 and HEB Is Critical for Early Lymphoid Specification
Cited by: 13
Author(s): Thibault Bouderlique, Lucía Peña-Pérez, Shabnam Kharazi, Miriam Hils, Xiaoze Li, Aleksandra Krstić, Annick De Paepe, Christian Schachtrup, Charlotte Gustafsson, Dan Holmberg, Christian Schachtrup, Robert Månsson
Software Mentions: 1
Published: over 7 years ago

10.3390/v12030327

Metagenomic Detection of Two Vientoviruses in a Human Sputum Sample
Cited by: 10
Author(s): Fernando Lázaro-Perona, Elias Dahdouh, Sergio Román-Soto, Sonia Jiménez-Rodríguez, Carlos Rodríguez-Antolín, Fernando Calle, Alexander Agrifoglio, Francisco Javier Membrillo, Julio García-Rodríguez, Jesús Mingorance
Software Mentions: 1
Published: over 6 years ago

10.1016/j.cell.2018.06.019

A Complete Electron Microscopy Volume of the Brain of Adult Drosophila melanogaster
Cited by: 667
Author(s): Zhihao Zheng, J. Scott Lauritzen, Eric Perlman, Camenzind G. Robinson, Matthew Nichols, Daniel E. Milkie, Omar Torrens, J. W. Price, Corey B. Fisher, Nadiya Sharifi, Steven A. Calle-Schuler, Lucia Kmecova, Iqbal J. Ali, Bill Karsh, Eric T. Trautman, John A. Bogovic, Philipp Hanslovsky, Gregory Jefferis, Michael Kazhdan, Khaled Khairy, Stephan Saalfeld, Richard D. Fetter, Davi D. Bock
Software Mentions: 1
Published: about 8 years ago

10.1038/s41598-019-50088-1

Upregulation of the chromatin remodeler HELLS is mediated by YAP1 in Sonic Hedgehog Medulloblastoma
Cited by: 18
Author(s): M. Hope Robinson, Victor Maximov, Shoeb Lallani, Hamza Farooq, Michael D. Taylor, Renee Read, Anna Marie Kenney
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-019-49894-4

A mass spectrometry-based assay using metabolic labeling to rapidly monitor chromatin accessibility of modified histone proteins
Cited by: 31
Author(s): Simone Sidoli, Mariana Lopes, Peder J. Lund, Naomi Goldman, Maria Fasolino, Mariel Coradin, Katarzyna Kulej, Natarajan V. Bhanu, Golnaz Vahedi, Benjamin A. Garcia
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41597-021-00908-9

The transcriptome of wild-type and immortalized corneal epithelial cells
Cited by: 4
Author(s): Kai Furuya, Tao Wu, Ai Orimoto, Eriko Sugano, Hiroshi Tomita, Tohru Kiyono, Takahiro Kurose, Yoshihiro Takai, T. Fukuda
Software Mentions: 1
Published: over 5 years ago

10.1051/parasite/2020022

Development of a workflow for identification of nuclear genotyping markers for <i>Cyclospora cayetanensis</i>
Cited by: 13
Author(s): Katelyn Houghton, Alexandre Lomsadze, Subin Park, Fernanda S. Nascimento, Joel Barratt, Michael J. Arrowood, Erik VanRoey, Eldin Talundzic, Mark Borodovsky, Yvonne Qvarnström
Software Mentions: 1
Published: over 6 years ago

10.1038/s41597-020-00576-1

De novo transcriptome assembly of cold stressed clones of the hexaploid Sequoia sempervirens (D. Don) Endl.
Cited by: 6
Author(s): Natalie Breidenbach, Vadim V. Sharov, Oliver Gailing, Konstantin V. Krutovsky
Software Mentions: 1
Published: about 6 years ago

10.1038/s41597-020-0558-8

Meta-analytic approach for transcriptome profiling of herpes simplex virus type 1
Cited by: 7
Author(s): Dóra Tombácz, Gábor Torma, Gábor Gulyás, Norbert Moldován, M Snyder, Zsolt Boldogkői
Software Mentions: 1
Published: about 6 years ago

10.3390/ijms20184345

Functional Dissection of pri-miR-290~295 in Dgcr8 Knockout Mouse Embryonic Stem Cells
Cited by: 3
Author(s): Ming Shi, Jun Hao, Xiwen Wang, Le‐Qi Liao, Cao H, Yangming Wang
Software Mentions: 1
Published: about 7 years ago

10.7554/eLife.65104

Nucleo-cytoplasmic shuttling of splicing factor SRSF1 is required for development and cilia function
Cited by: 24
Author(s): Fiona Haward, Magdalena M. Maslon, Patricia L Yeyati, Nicolás Bellora, Jan N. Hansen, Stuart Aitken, Jennifer Lawson, Alex von Kriegsheim, Dagmar Wachten, Pleasantine Mill, Ian R. Adams, Javier F. Cáceres
Software Mentions: 1
Published: about 5 years ago

10.1038/s41597-019-0226-z

Transcriptomic profiling of sesame during waterlogging and recovery
Cited by: 15
Author(s): Komivi Dossa, Jun You, Linhai Wang, Yanxin Zhang, Donghua Li, Rong Zhou, Jingyin Yu, Xin Wei, Xiaodong Zhu, Shiyang Jiang, Yuan Gao, Marie Ali Mmadi
Software Mentions: 1
Published: almost 7 years ago

10.3389/fimmu.2018.00899

Complement-Opsonized HIV-1 Alters Cross Talk Between Dendritic Cells and Natural Killer (NK) Cells to Inhibit NK Killing and to Upregulate PD-1, CXCR3, and CCR4 on T Cells
Cited by: 12
Author(s): Rada Ellegård, Mohammad Khalid, Cecilia Svanberg, Hanna Holgersson, Ylva Thoren, Mirja Karolina Wittgren, Jorma Hinkula, Sofia Nyström, Esaki M. Shankar, Marie Larsson
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-019-51094-z

Experimental challenge with bovine respiratory syncytial virus in dairy calves: bronchial lymph node transcriptome response
Cited by: 22
Author(s): Dayle Johnston, Bernadette Earley, Matthew S. McCabe, Ken Lemon, Catherine Duffy, Michael McMenamy, S. L. Cosby, JaeWoo Kim, Gordon Blackshields, Taylor Jf, Sinéad M. Waters
Software Mentions: 1
Published: almost 7 years ago

10.3390/ijms20194722

Overexpression of BpCUC2 Influences Leaf Shape and Internode Development in Betula pendula
Cited by: 9
Author(s): Chaoyi Liu, Huirong Xu, Rui Han, Shuo Wang, Guifeng Liu, Chen Su, Jiying Chen, Xiuyan Bian, Jing Jiang
Software Mentions: 1
Published: almost 7 years ago

10.1242/dev.177618

<i>Pax9</i> is required for cardiovascular development and interacts with <i>Tbx1</i> in the pharyngeal endoderm to control 4th pharyngeal arch artery morphogenesis
Cited by: 19
Author(s): Helen M. Phillips, Catherine A. Stothard, Wasay Mohiuddin Shaikh Qureshi, Anastasia I. Kousa, J. Alberto Briones-Leon, Ramada R. Khasawneh, Chloe O’Loughlin, Rachel Sanders, Silvia Mazzotta, Rebecca Dodds, Kerstin Seidel, Timothy Bates, Mitsushiro Nakatomi, Simon Cockell, Jürgen Schneider, Timothy J. Mohun, René Maehr, Ralf Kist, Heiko Peters, Simon D. Bamforth
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-019-51522-0

A clinicohaematological prognostic model for nasal-type natural killer/T-cell lymphoma: A multicenter study
Cited by: 13
Author(s): Kang Hai Tan, Burton K. Chia, Jing Quan Lim, Lay Poh Khoo, Chee Leong Cheng, Louis Tan, Eileen Poon, Nagavalli Somasundaram, Mohamad Farid, Tiffany Tang, Miriam Tao, Daryl Ming Zhe Cheah, Yurike Laurensia, Jane Wan Lu Pang, Tongxing Song, Jian Tan, Dachuan Huang, Seok Jin Kim, Won Seog Kim, Choon Kiat Ong, Soon Thye Lim, Jason Yongsheng Chan
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-019-52049-0

Characterisation of proguanylin expressing cells in the intestine – evidence for constitutive luminal secretion
Cited by: 8
Author(s): Florent Serge Dye, Pierre Larraufie, Richard G. Kay, Tamana Darwish, Juraj Rievaj, Deborah A. Goldspink, Claire L Meek, Stephen Middleton, Richard Hardwick, Geoffrey Roberts, Jennifer Percival-Alwyn, T. Owens Vaughan, Franco Ferraro, Benjamin Challis, Stephen O’Rahilly, Maria Groves, Fiona M. Gribble, Frank Reimann
Software Mentions: 1
Published: almost 7 years ago

10.1002/pld3.174

In Arabidopsis hybrids and Hybrid Mimics, up‐regulation of cell wall biogenesis is associated with the increased plant size
Cited by: 7
Author(s): Li Wang, Li Min Wu, Ian K. Greaves, Elizabeth S. Dennis, W. James Peacock
Software Mentions: 1
Published: almost 7 years ago

10.3390/ijms11103906

Preparation of an Adhesive in Emulsion for Maxillofacial Prosthetic
Cited by: 2
Author(s): Judith A. Sánchez-García, Alejandra Ortega, Federico Barceló-Santana, Joaquín Palacios‐Alquisira
Software Mentions: 1
Published: almost 16 years ago