10.3389/fcimb.2021.671413

Assessing the Concordance Between Urogenital and Vaginal Microbiota: Can Urine Specimens Be Used as a Proxy for Vaginal Samples?
Cited by: 7
Author(s): Sarah E. Brown, Courtney K. Robinson, Michelle Shardell, Johanna B. Holm, Jacques Ravel, Khalil G. Ghanem, Rebecca M. Brotman
Software Mentions: 1
Published: about 4 years ago

10.1038/s41598-019-38705-5

Widespread PERK-dependent repression of ER targets in response to ER stress
Cited by: 38
Author(s): Nir Gonen, Niv Sabath, Christopher B. Burge, Reut Shalgi
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-019-41058-8

Rapid and reversible suppression of ALT by DAXX in osteosarcoma cells
Cited by: 32
Author(s): Kathryn E. Yost, Sarah F. Clatterbuck Soper, Robert L. Walker, Marbin Pineda, Yuelin J. Zhu, Corbin D. Ester, Soyeon A. Showman, Anna V. Roschke, Joshua J. Waterfall, Paul S. Meltzer
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-019-41115-2

Pro-angiogenic Ginsenosides F1 and Rh1 Inhibit Vascular Leakage by Modulating NR4A1
Cited by: 10
Author(s): Ji In Kang, Yuni Choi, Chang-Hau Cui, Daeyoup Lee, Sun Chang Kim, Ho Min Kim
Software Mentions: 1
Published: over 6 years ago

10.1242/dmm.040105

Characterization of the human GnRH neuron developmental transcriptome using a <i>GNRH1</i>-TdTomato reporter line in human pluripotent stem cells
Cited by: 17
Author(s): Carina Lund, Venkatram Yellapragada, Sanna Vuoristo, Diego Balboa, Sara Trova, Cécile Allet, Nazli Eskici, Kristiina Pulli, Paolo Giacobini, Timo Tuuri, Taneli Raivio
Software Mentions: 1
Published: over 5 years ago

10.3390/genes12050771

Genome Expression Dynamics Reveal the Parasitism Regulatory Landscape of the Root-Knot Nematode Meloidogyne incognita and a Promoter Motif Associated with Effector Genes
Cited by: 23
Author(s): Martine Da Rocha, Caroline Bournaud, Julie Dazenière, Peter Thorpe, Marc Bailly‐Bechet, Clément Pellegrin, Arthur Péré, Priscila Grynberg, Laetitia Perfus‐Barbeoch, Sebastian Eves‐van den Akker, Étienne Danchin
Software Mentions: 1
Published: about 4 years ago

10.1038/s41375-020-01043-x

IDH1/2 mutations in acute myeloid leukemia patients and risk of coronary artery disease and cardiac dysfunction—a retrospective propensity score analysis
Cited by: 24
Author(s): Badder Kattih, Amir Shirvani, Piroska Klement, Abel Martin Garrido, Razif Gabdoulline, Alessandro Liebich, Maximilian Brandes, Anuhar Chaturvedi, Timon Seeger, Felicitas Thol, Gudrun Göhring, Brigitte Schlegelberger, Robert Geffers, David John, Udo Bavendiek, Johann Bauersachs, Arnold Ganser, Joerg Heineke, Michael Heuser
Software Mentions: 1
Published: almost 5 years ago

10.3390/genes12060859

A Global Landscape of Miniature Inverted-Repeat Transposable Elements in the Carrot Genome
Cited by: 2
Author(s): Alicja Macko-Podgórni, Gabriela Machaj, Dariusz Grzebelus
Software Mentions: 1
Published: about 4 years ago

10.3390/genes12060883

The Combined Human Genotype of Truncating TTN and RBM20 Mutations Is Associated with Severe and Early Onset of Dilated Cardiomyopathy
Cited by: 11
Author(s): Anna Gärtner, Julia Bloebaum, Hendrik Milting, Bärbel Klauke, Katharina Sielemann, Astrid Kassner, Henrik Fox, Michiel Morshuis, Jens Tiesmeier, Uwe Schulz, Ralph Knoell, Jan Gummert, Hendrik Milting
Software Mentions: 1
Published: about 4 years ago

10.21307/jofnem-2019-052

Genome Announcement: The Draft Genomes of Two Radopholus similis populations from Costa Rica
Cited by: 5
Author(s): Catherine L. Wram, Cedar Hesse, Sulochana K. Wasala, Dana K. Howe, Amy B. Peetz, Dee R. Denver, Danny A. Humphreys-Pereira, Inga A. Zasada
Software Mentions: 1
Published: over 6 years ago

10.1242/dmm.038083

Modelling the MYC-driven normal-to-tumour switch in breast cancer
Cited by: 13
Author(s): Corey Lourenco, Manpreet Kalkat, Kathleen E. Houlahan, Jason De Melo, Joseph Longo, Susan J. Done, Paul C. Boutros, Linda Z. Penn
Software Mentions: 1
Published: about 6 years ago

10.1038/s41419-020-2257-y

Lipid desaturation-associated endoplasmic reticulum stress regulates MYCN gene expression in hepatocellular carcinoma cells
Cited by: 30
Author(s): Xian‐Yang Qin, Ting Su, Wenkui Yu, Soichi Kojima
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-41269-z

The acidic protein rich in leucines Anp32b is an immunomodulator of inflammation in mice
Cited by: 11
Author(s): Jan Chemnitz, Dorothea Pieper, Lena Stich, Udo Schumacher, Stefan Balabanov, Michael Spohn, Adam Grundhoff, Alexander Steinkasserer, Joachim Hauber, Elisabeth Zinser
Software Mentions: 1
Published: over 6 years ago

10.3389/fonc.2021.732644

RNA Sequencing Data for FFPE Tumor Blocks Can Be Used for Robust Estimation of Tumor Mutation Burden in Individual Biosamples
Cited by: 4
Author(s): Maxim Sorokin, Alexander Gorelyshev, Victor Efimov, Evgenia Zotova, Marianna Zolotovskaia, Elizaveta Rabushko, Denis Kuzmin, Alexander Seryakov, Dmitri Kamashev, Xinmin Li, Elena Poddubskaya, Maria Suntsova, Anton Buzdin
Software Mentions: 1
Published: almost 4 years ago

10.1038/s41598-019-41277-z

A reference collection of patient-derived cell line and xenograft models of proneural, classical and mesenchymal glioblastoma
Cited by: 109
Author(s): Brett W. Stringer, Bryan W. Day, Rochelle C.J. D’Souza, Paul Jamieson, Kathleen S. Ensbey, Zara C. Bruce, Yi Chieh Lim, Kate Goasdoué, Carolin Offenhäuser, Seçkin Akgül, Suzanne Allan, Thomas Robertson, Peter C. Lucas, Gert Tollesson, Scott Campbell, Chris Winter, Hongdo Do, Alexander Dobrovic, Po Inglis, Rosalind L. Jeffree, Terrance G. Johns, Andrew W. Boyd
Software Mentions: 1
Published: over 6 years ago

10.1038/s41419-020-2536-7

The HMGB1-RAGE axis modulates the growth of autophagy-deficient hepatic tumors
Cited by: 14
Author(s): Bilon Khambu, Honghai Hong, Sheng Liu, Gang Liu, Xiaoyun Chen, Zheng Dong, Jun Wan, Xiao Ming Yin
Software Mentions: 1
Published: about 5 years ago

10.1186/s12984-020-00790-3

A comprehensive scheme for the objective upper body assessments of subjects with cerebellar ataxia
Cited by: 11
Author(s): Ha Manh Tran, Khoa D. Nguyen, Pubudu N. Pathirana, Malcolm Horne, Laura Power, David J. Szmulewicz
Software Mentions: 1
Published: over 4 years ago

10.1093/gigascience/giy092

Hot-starting software containers for STAR aligner
Cited by: 8
Author(s): Pai Zhang, Ling‐Hong Hung, Wes Lloyd, Ka Yee Yeung
Software Mentions: 1
Published: almost 7 years ago

10.1186/s12870-019-2191-2

Over-expression of poplar NAC15 gene enhances wood formation in transgenic tobacco
Cited by: 15
Author(s): Wenjing Yao, Dawei Zhang, Boru Zhou, Jianping Wang, Renhua Li, Tingbo Jiang
Software Mentions: 1
Published: over 5 years ago

10.1038/s41419-020-02754-w

The longevity-associated variant of BPIFB4 improves a CXCR4-mediated striatum–microglia crosstalk preventing disease progression in a mouse model of Huntington’s disease
Cited by: 14
Author(s): Alba Di Pardo, Elena Ciaglia, Monica Cattaneo, Anna Maciąg, Francesco Montella, Valentina Lopardo, Anna Ferrario, Francesco Villa, Michele Madonna, Enrico Amico, Albino Carrizzo, Antonio L. Damato, Giuseppe Pepe, Federico Marracino, Alberto Auricchio, Carmine Vecchione, Vittorio Maglione, Annibale Alessandro Puca
Software Mentions: 1
Published: about 5 years ago

10.1038/cddis.2016.188

MDM2 facilitates adipocyte differentiation through CRTC-mediated activation of STAT3
Cited by: 26
Author(s): Philip Hallenborg, Majken Siersbæk, Iñigo Barrio-Hernandez, Ronni Nielsen, Karsten Kristiansen, Susanne Mandrup, Lars Grøntved, Blagoy Blagoev
Software Mentions: 1
Published: about 9 years ago

10.1186/s12913-021-06521-1

Protocol for a two-arm pragmatic stepped-wedge hybrid effectiveness-implementation trial evaluating Engagement and Collaborative Management to Proactively Advance Sepsis Survivorship (ENCOMPASS)
Cited by: 3
Author(s): Marc Kowalkowski, Tara Eaton, Andrew McWilliams, Hazel Tapp, Aleta Rios, Stephanie Murphy, Ryan Burns, Bella Gutnik, Katherine O’Hare, Lewis McCurdy, Michael Dulin, Christopher M. Blanchette, Shih-Hsiung Chou, Scott D. Halpern, Derek C. Angus, Stephanie Parks Taylor
Software Mentions: 1
Published: about 4 years ago

10.3390/microorganisms8091319

Genome Wide Analysis Reveals the Role of VadA in Stress Response, Germination, and Sterigmatocystin Production in Aspergillus nidulans Conidia
Cited by: 8
Author(s): Ye-Eun Son, Hee-Soo Park
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41419-021-04146-0

The long non-coding RNA HOTAIRM1 promotes tumor aggressiveness and radiotherapy resistance in glioblastoma
Cited by: 18
Author(s): Ulvi Ahmadov, Daniel Picard, Jasmin Bartl, Manuela Silginer, Marija Trajkovic‐Arsic, Nan Qin, Lena Blümel, Marietta Wolter, Jonathan Lim, David Pauck, Alina M Winkelkotte, Marlen Melcher, Maike Langini, Viktoria Marquardt, Felix Sander, Anja Stefanski, Sascha Steltgens, Christina Hassiepen, Anna Kaufhold, Frank Meyer, Annette Seibt, Lara Kleinesudeik, Anika Hain, Carsten Münk, Christiane B. Knobbe-Thomsen, Alexander Schramm, Ute Fischer, Gabriel Leprivier, Kai Stühler, Simone Fulda, Jens T. Siveke, Felix Distelmaier, Arndt Borkhardt, Michael Weller, Guido Reifenberger, Marc Remke
Software Mentions: 1
Published: almost 4 years ago

10.1007/s00395-020-00828-6

Functional investigation of the coronary artery disease gene SVEP1
Cited by: 20
Author(s): Michael J. Winkler, Philipp Müller, Amin M. Sharifi, Jana Wobst, Hanna Winter, Michal Mokrý, Lijiang Ma, Sander W. van der Laan, Shichao Pang, Benedikt Miritsch, Julia Hinterdobler, Julia Werner, Barbara Stiller, Ulrich Güldener, Tom R. Webb, Folkert W. Asselbergs, Johan Björkegren, Lars Maegdefessel, Heribert Schunkert, Hendrik B. Sager, Thorsten Kessler
Software Mentions: 1
Published: over 4 years ago

10.1093/gigascience/giz019

<i>De novo</i> genome assembly of the white-spotted flower chafer (<i>Protaetia brevitarsis</i>)
Cited by: 25
Author(s): Kui Wang, Pengpeng Li, Yongyang Gao, Chunqin Liu, Qinglei Wang, Jing Yin, Jie Zhang, Geng Li, Changlong Shu
Software Mentions: 1
Published: over 6 years ago

10.1038/s41419-019-1858-9

Deletion of OSBPL2 in auditory cells increases cholesterol biosynthesis and drives reactive oxygen species production by inhibiting AMPK activity
Cited by: 21
Author(s): Hongshun Wang, Changsong Lin, Jun Yao, Hairong Shi, Cui Zhang, Qinjun Wei, Yajie Lu, Zhibin Chen, Guangqian Xing, Xin Cao
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12864-018-4456-9

Ouroboros resembling competitive endogenous loop (ORCEL) in circular RNAs revealed through transcriptome sequencing dataset analysis
Cited by: 4
Author(s): Yu-Chen Liu, Hsiao Chin Hong, Chi Yang, Wei Hsiang Lee, Hsin Tzu Huang, Hsien-Da Huang
Software Mentions: 1
Published: about 7 years ago

10.3390/ijms22179618

Pathogenic Effects of Mineralocorticoid Pathway Activation in Retinal Pigment Epithelium
Cited by: 9
Author(s): Jérémie Canonica, Min Zhao, Tatiana Favez, Emmanuelle Gélizé, Laurent Jonet, Laura Kowalczuk, Justine Guégan, Damien Le Menuet, Say Viengchareun, Marc Lombès, Eric Pussard, Yvan Arsenijévic, Francine Béhar-Cohen
Software Mentions: 1
Published: almost 4 years ago

10.3389/fonc.2020.01203

A Greedy Algorithm-Based Stem Cell LncRNA Signature Identifies a Novel Subgroup of Lung Adenocarcinoma Patients With Poor Prognosis
Cited by: 3
Author(s): Seema Khadirnaikar, Annesha Chatterjee, Pranjal Kumar, Sudhanshu Shukla
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41419-021-03539-5

Epigenetic regulation of p62/SQSTM1 overcomes the radioresistance of head and neck cancer cells via autophagy-dependent senescence induction
Cited by: 21
Author(s): Myungjin Lee, Hae Yun Nam, Hee-Bum Kang, Won Hyeok Lee, Geunhee Lee, Gi‐Jun Sung, Myung Woul Han, Kyung–Ja Cho, Eun‐Ju Chang, Kyung‐Chul Choi, Seong Who Kim, Sang Yoon Kim
Software Mentions: 1
Published: over 4 years ago

10.3389/fnins.2020.00508

Inferior Colliculus Transcriptome After Status Epilepticus in the Genetically Audiogenic Seizure-Prone Hamster GASH/Sal
Cited by: 6
Author(s): Sandra M. Díaz-Rodríguez, Daniel López-López, M.J. Herrero-Turrión, Ricardo Gómez-Nieto, Ángel Canal-Alonso, Dolores E. López
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-019-42184-z

Unveiling novel targets of paclitaxel resistance by single molecule long-read RNA sequencing in breast cancer
Cited by: 15
Author(s): Lijun Bi, Xin Hu, Zhi‐Ming Shao
Software Mentions: 1
Published: over 6 years ago

10.7554/eLife.09207

SPOP mutation leads to genomic instability in prostate cancer
Cited by: 142
Author(s): Gunther Boysen, Christopher E. Barbieri, Davide Prandi, Mirjam Blattner, Sung-Suk Chae, Arun Dahija, Srilakshmi Nataraj, Dennis Huang, Clarisse Marotz, Limei Xu, Julie Huang, Paola Lecca, Sagar Chhangawala, Liu D, Pengbo Zhou, Andrea Sboner, Johann S. de Bono, Francesca Demichelis, Yariv Houvras, Mark A. Rubin
Software Mentions: 1
Published: almost 10 years ago

10.1038/s41598-019-41525-2

RNA Sequencing Provides Novel Insights into the Transcriptome of Aldosterone Producing Adenomas
Cited by: 16
Author(s): Samuel Backman, Tobias Åkerström, Rajani Maharjan, Kenko Cupisti, Holger S. Willenberg, Per Hellman, Peyman Björklund
Software Mentions: 1
Published: over 6 years ago

10.1038/cddis.2017.197

All-trans retinoic acid and arsenic trioxide fail to derepress the monocytic differentiation driver Irf8 in acute promyelocytic leukemia cells
Cited by: 14
Author(s): Xiang-Zhen Liu, Juan Chen, Shanhe Yu, Yan Li, Hong Guo, Jian-Min Dai, Wu Zhang, Jiang Zhu
Software Mentions: 1
Published: about 8 years ago

10.1038/s41419-021-03880-9

Effects of short-chain fatty acids in inhibiting HDAC and activating p38 MAPK are critical for promoting B10 cell generation and function
Cited by: 36
Author(s): Zhang‐Qi Feng, Yi Qiu, Yilian Huang, Hang Zou, Cheng Xiao, Qingru Niu, Aoxiang Luo, Jianbo Sun
Software Mentions: 1
Published: about 4 years ago

10.3389/fncel.2017.00212

The FOXP2-Driven Network in Developmental Disorders and Neurodegeneration
Cited by: 28
Author(s): Franz Oswald, Patricia Klöble, André Ruland, David Rosenkranz, Bastian Hinz, Falk Butter, Sanja Ramljak, Ulrich Zechner, Holger Herlyn
Software Mentions: 1
Published: about 8 years ago

10.3389/fnins.2019.01453

Physical Activity Induces Nucleus Accumbens Genes Expression Changes Preventing Chronic Pain Susceptibility Promoted by High-Fat Diet and Sedentary Behavior in Mice
Cited by: 9
Author(s): Arthur Freitas Brandao, Ivan José Magayewski Bonet, Marco Pagliusi, Gabriel Gerardini Zanetti, Nam Pho, Cláudia Herrera Tambeli, Carlos Amílcar Parada, André Schwambach Vieira, César Renato Sartori
Software Mentions: 1
Published: over 5 years ago

10.1186/s12920-019-0635-z

Differential alternative splicing regulation among hepatocellular carcinoma with different risk factors
Cited by: 10
Author(s): Young–Joo Jin, Seyoun Byun, Seonggyun Han, J. Edward Chamberlin, Dong-Wook Kim, Min Jung Kim, Younghee Lee
Software Mentions: 1
Published: over 5 years ago

10.1016/j.chembiol.2021.02.006

A small-molecule inhibitor of the BRCA2-RAD51 interaction modulates RAD51 assembly and potentiates DNA damage-induced cell death
Cited by: 19
Author(s): D.E. Scott, Nicola J. Francis-Newton, M. Marsh, Anthony G. Coyne, Gerhard W. Fischer, Tommaso Moschetti, Andrew R. Bayly, Timothy Sharpe, Kalina T. Haas, Lorraine Barber, Chiara R. Valenzano, Rajavel Srinivasan, David J. Huggins, Mi-Young Lee, A. N. Emery, B. Hardwick, M.T. Ehebauer, Claudio Dagostin, Alessandro Esposito, Luca Pellegrini, Trevor Perrior, Grahame J. McKenzie, Tom L. Blundell, Marko Hyvönen, John Skidmore, Ashok R. Venkitaraman, Chris Abell
Software Mentions: 1
Published: about 4 years ago

10.1038/s41598-019-43282-8

Deleterious effects of formalin-fixation and delays to fixation on RNA and miRNA-Seq profiles
Cited by: 36
Author(s): Wendell Jones, Sarah R. Greytak, Hana M. Odeh, Peng Guan, Jason Powers, Jasmin Bavarva, Helen M. Moore
Software Mentions: 1
Published: about 6 years ago

10.1186/s12888-016-0858-x

Recovery-focused care planning and coordination in England and Wales: a cross-national mixed methods comparative case study
Cited by: 59
Author(s): Alan Simpson, Ben Hannigan, Michael Coffey, Sally Barlow, Rachel Cohen, Aled Jones, Jitka Všetečková, Alison Faulkner, Ashleigh Thornton, Martin Cartwright
Software Mentions: 1
Published: about 9 years ago

10.3762/bjnano.7.198

From iron coordination compounds to metal oxide nanoparticles
Cited by: 13
Author(s): Mihail Iacob, Carmen Racleş, Codrin Tugui, George Stiubianu, Adrian Bele, Liviu Sãcãrescu, Daniel Ţîmpu, Maria Cazacu
Software Mentions: 1
Published: over 8 years ago

10.1016/j.cell.2016.06.020

Genetic Codes with No Dedicated Stop Codon: Context-Dependent Translation Termination
Cited by: 132
Author(s): Estienne C. Swart, Valentina Serra, Giulio Petroni, Mariusz Nowacki
Software Mentions: 1
Published: about 9 years ago

10.1002/glia.23516

The miRNA biogenesis pathway prevents inappropriate expression of injury response genes in developing and adult Schwann cells
Cited by: 8
Author(s): Deniz Gökbuget, Jorge A. Pereira, Lennart Opitz, Dominik Christe, Tobias Keßler, Antonin Marchais, Ueli Suter
Software Mentions: 1
Published: almost 7 years ago

10.1186/s40170-018-0186-3

CD38 is methylated in prostate cancer and regulates extracellular NAD+
Cited by: 26
Author(s): Jack Mottahedeh, Michael C. Haffner, Tristan Grogan, Takahiro Hashimoto, Preston D. Crowell, Himisha Beltran, Andrea Sboner, Rohan Bareja, David Esopi, William B. Isaacs, Srinivasan Yegnasubramanian, Matthew B. Rettig, David Elashoff, Elizabeth A. Platz, Angelo M. De Marzo, Michael A. Teitell, Andrew S. Goldstein
Software Mentions: 1
Published: almost 7 years ago

10.1080/16549716.2019.1664103

The logic model for Uganda’s health sector preparedness for public health threats and emergencies
Cited by: 12
Author(s): Alex Riolexus Ario, Issa Makumbi, Lilian Bulage, Simon Kyazze, Joshua Kayiwa, Milton Wetaka, Juliet N. Kasule, Felix Ocom
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-019-43773-8

Transcriptome profiles revealed the mechanisms underlying the adaptation of yak to high-altitude environments
Cited by: 24
Author(s): Jinwei Xin, Zhixin Chai, Chengfu Zhang, Qiang Zhang, Yong Zhu, Hanwen Cao, Qiumei Ji, Jincheng Zhong
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-019-44541-4

Systematic evaluation and optimization of the experimental steps in RNA G-quadruplex structure sequencing
Cited by: 12
Author(s): Pui Yan Yeung, Jieyu Zhao, Elaine Chow, Xi Mou, HuiQi Hong, Leilei Chen, Ting‐Fung Chan, Chun Kit Kwok
Software Mentions: 1
Published: about 6 years ago

10.7554/eLife.28652

Host proteostasis modulates influenza evolution
Cited by: 30
Author(s): Angela M Phillips, Luna O Gonzalez, Emmanuel E Nekongo, Anna I. Ponomarenko, Sean M. McHugh, Vincent Butty, Stuart S. Levine, Yu‐Shan Lin, Leonid A. Mirny, Matthew D. Shoulders
Software Mentions: 1
Published: almost 8 years ago

10.1186/s12955-018-0858-2

Assessing the reliability of the short form 12 (SF-12) health survey in adults with mental health conditions: a report from the wellness incentive and navigation (WIN) study
Cited by: 138
Author(s): Tianyao Huo, Yi Guo, Elizabeth Shenkman, Keith E. Muller
Software Mentions: 1
Published: over 7 years ago

10.1186/1477-7525-8-82

Validation study of a web-based assessment of functional recovery after radical prostatectomy
Cited by: 57
Author(s): Andrew J. Vickers, Caroline Savage, Marwan Shouery, James A. Eastham, Peter T. Scardino, Ethan Basch
Software Mentions: 1
Published: almost 15 years ago

10.3390/ijms21144849

Dual Leucine Zipper Kinase Is Constitutively Active in the Adult Mouse Brain and Has Both Stress-Induced and Homeostatic Functions
Cited by: 7
Author(s): Sunil Goodwani, Celia G. Fernandez, Paul Acton, Virginie Buggia-Prévot, Morgan McReynolds, Jiacheng Ma, Cheng Hu, Mary E. Hamby, Yongying Jiang, Le Kang, Michael Soth, Philip Jones, William J. Ray
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-019-45129-8

Shared Molecular Signatures Across Neurodegenerative Diseases and Herpes Virus Infections Highlights Potential Mechanisms for Maladaptive Innate Immune Responses
Cited by: 27
Author(s): Ana Caroline Costa, Heather B. Madsen, James R. Brown
Software Mentions: 1
Published: about 6 years ago

10.1016/j.heliyon.2020.e05850

Atlas of ACE2 gene expression reveals novel insights into transmission of SARS-CoV-2
Cited by: 49
Author(s): Kun Sun, Liuqi Gu, Li Ma, Yugang Duan
Software Mentions: 1
Published: over 4 years ago

10.3390/ijms22094504

HERV-Derived Ervpb1 Is Conserved in Simiiformes, Exhibiting Expression in Hematopoietic Cell Lineages Including Macrophages
Cited by: 1
Author(s): Ayumi Matsuzawa, Jiyoung Lee, So Nakagawa, Johbu Itoh, Mahoko Takahashi Ueda, Satomi Mitsuhashi, Yuta Kochi, Tomoko Kaneko-Ishino, Fumitoshi Ishino
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-019-45178-z

Combined obeticholic acid and elafibranor treatment promotes additive liver histological improvements in a diet-induced ob/ob mouse model of biopsy-confirmed NASH
Cited by: 32
Author(s): Jonathan D. Roth, Sanne Skovgård Veidal, Louise K. D. Fensholdt, Kristoffer Rigbolt, Romeo Papazyan, Jens Nielsen, Michael Feigh, Niels Vrang, Mark A. Young, Jacob Jelsing, Luciano Adorini, Henrik H. Hansen
Software Mentions: 1
Published: about 6 years ago

10.1038/s41437-021-00434-9

On the origin of the widespread self-compatible allotetraploid Capsella bursa-pastoris (Brassicaceae)
Cited by: 7
Author(s): Jörg A. Bachmann, Andrew Tedder, Marco Fracassetti, Kim A. Steige, Clément Lafon‐Placette, Claudia Köhler, Tanja Slotte
Software Mentions: 1
Published: over 4 years ago

10.1186/s12974-020-01842-0

Stress-induced NLRP3 inflammasome activation negatively regulates fear memory in mice
Cited by: 56
Author(s): Yuan Dong, Shuoshuo Li, Yiming Lu, Xiaoheng Li, Yuhe Liao, Zhixin Peng, Yunfeng Li, Lin Hou, Zengqiang Yuan, Jinbo Cheng
Software Mentions: 1
Published: about 5 years ago

10.1016/j.cell.2018.06.019

A Complete Electron Microscopy Volume of the Brain of Adult Drosophila melanogaster
Cited by: 667
Author(s): Zhihao Zheng, J. Scott Lauritzen, Eric Perlman, Camenzind G. Robinson, Matthew Nichols, Daniel E. Milkie, Omar Torrens, J. W. Price, Corey B. Fisher, Nadiya Sharifi, Steven A. Calle-Schuler, Lucia Kmecova, Iqbal J. Ali, Bill Karsh, Eric T. Trautman, John A. Bogovic, Philipp Hanslovsky, Gregory Jefferis, Michael Kazhdan, Khaled Khairy, Stephan Saalfeld, Richard D. Fetter, Davi D. Bock
Software Mentions: 1
Published: about 7 years ago

10.1128/MRA.01367-19

Complete Genome Sequences for Two <i>Talaromyces marneffei</i> Clinical Isolates from Northern and Southern Vietnam
Cited by: 5
Author(s): Christina A. Cuomo, Terrance Shea, Thu Nguyen, Philip Ashton, John R. Perfect, Thuy Le
Software Mentions: 1
Published: over 5 years ago

10.1186/s12920-020-00738-5

Fusion transcript detection using spatial transcriptomics
Cited by: 17
Author(s): Stefanie Friedrich, Erik L. L. Sonnhammer
Software Mentions: 1
Published: almost 5 years ago

10.3390/ijms22094750

Targeting Mitochondrial Metabolism in Clear Cell Carcinoma of the Ovaries
Cited by: 7
Author(s): Xiaonan Zhang, Mihir Shetty, Valentino Clemente, Stig Linder, Martina Bazzaro
Software Mentions: 1
Published: about 4 years ago

10.1038/s41438-019-0142-6

Updated annotation of the wild strawberry Fragaria vesca V4 genome
Cited by: 85
Author(s): Yongping Li, Mengting Pi, Qi Gao, Zhongchi Liu, Chunying Kang
Software Mentions: 1
Published: about 6 years ago

10.1038/s41438-021-00613-z

An ancient whole-genome duplication event and its contribution to flavor compounds in the tea plant (Camellia sinensis)
Cited by: 22
Author(s): Ya Wang, Fei Chen, Yuanchun Ma, Taikui Zhang, Pengchuan Sun, Mei-Fang Lan, Fang Li, Wanping Fang
Software Mentions: 1
Published: almost 4 years ago

10.3390/ijms22094791

Identification of Novel Fusion Transcripts in High Grade Serous Ovarian Cancer
Cited by: 3
Author(s): A.M. Newtson, Henry Reyes Pineda, Eric J. Devor, Michael J. Goodheart, Jesús González Bosquet
Software Mentions: 1
Published: about 4 years ago

10.1038/s41598-019-45538-9

Major changes in chromosomal somy, gene expression and gene dosage driven by SbIII in Leishmania braziliensis and Leishmania panamensis
Cited by: 32
Author(s): Luz Helena Patiño, Hideo Imamura, Lissa Cruz-Saavedra, Paula Pavía, Carlos Muskus, Claudia Méndez, Jean Claude Dujardin, Juan David Ramírez
Software Mentions: 1
Published: about 6 years ago

10.3390/nu11040709

High Levels of Prebiotic Resistant Starch in Diet Modulate Gene Expression and Metabolomic Profile in Pancreatic Cancer Xenograft Mice
Cited by: 9
Author(s): Concetta Panebianco, Antonio Villani, Valerio Pazienza
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms21155420

DNA Methyltransferase 1 (DNMT1) Acts on Neurodegeneration by Modulating Proteostasis-Relevant Intracellular Processes
Cited by: 12
Author(s): Cathrin Bayer, Georg Pitschelatow, Nina Hannemann, Jenice Linde, Julia Reichard, Daniel Pensold, Geraldine Zimmer-Bensch
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41438-021-00476-4

Reannotation of the cultivated strawberry genome and establishment of a strawberry genome database
Cited by: 36
Author(s): Tianjia Liu, Muzi Li, Zhongchi Liu, Xiaoyan Ai, Yongping Li
Software Mentions: 1
Published: over 4 years ago

10.1038/s41438-020-0301-9

Hybrid de novo genome assembly of red gromwell (Lithospermum erythrorhizon) reveals evolutionary insight into shikonin biosynthesis
Cited by: 28
Author(s): Robert Auber, Thiti Suttiyut, Rachel M. McCoy, Manoj Ghaste, Joseph W. Crook, Amanda L. Pendleton, Joshua R. Widhalm, Jennifer H. Wisecaver
Software Mentions: 1
Published: about 5 years ago

10.3389/fncel.2020.583994

Initiation of Supporting Cell Activation for Hair Cell Regeneration in the Avian Auditory Epithelium: An Explant Culture Model
Cited by: 17
Author(s): Mami Matsunaga, Tomoko Kita, Ryôichi Yamamoto, Norio Yamamoto, Takayuki Okano, Koichi Omori, Satoko Sakamoto, Takayuki Nakagawa
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-019-46276-8

Unveiling the presence of biosynthetic pathways for bioactive compounds in the Thalassiosira rotula transcriptome
Cited by: 22
Author(s): Valeria Di Dato, F. Di Costanzo, Roberta Barbarinaldi, Anna Maria Perna, Adrianna Ianora, Giovanna Romano
Software Mentions: 1
Published: about 6 years ago

10.1016/j.cell.2019.10.015

Long-Term Culture Captures Injury-Repair Cycles of Colonic Stem Cells
Cited by: 127
Author(s): Yi Wang, I-Ling Chiang, Thomas O’Hara, Satoru Fujii, Jiye Cheng, Brian D. Muegge, Aaron M. Ver Heul, Nathan D. Han, Qiuhe Lu, Sidong Xiong, Feidi Chen, Chin‐Wen Lai, Hana Jáňová, Renee Wu, Charles E. Whitehurst, Kelli L. VanDussen, Ta‐Chiang Liu, Jeffrey I. Gordon, L. David Sibley, Thaddeus S. Stappenbeck
Software Mentions: 1
Published: over 5 years ago

10.1016/j.cell.2021.02.040

Archaeogenomic distinctiveness of the Isthmo-Colombian area
Cited by: 24
Author(s): Marco Rosario Capodiferro, Bethany Aram, Alessandro Raveane, Nicola Rambaldi Migliore, Giulia Colombo, Linda Ongaro, Javier Rivera, Tomás Mendizábal, Iosvany Hernández-Mora, Maribel Tribaldos, Ugo A. Perego, Hongjie Li, Christiana L. Scheib, Alessandra Modi, Alberto Gómez-Carballa, Viola Grugni, Gianluca Lombardo, Garrett Hellenthal, Juan Miguel Pascale, Francesco Bertolini, Gaetano S. Grieco, Cristina Cereda, Martina Lari, David Caramelli, Luca Pagani, Mait Metspalu, Ronny Friedrich, Corina Knipper, Anna Olivieri, Antonio Salas, Richard G. Cooke, Francesco Montinaro, Jorge Motta, Antonio Torroni, Juan Guillermo Martín, Ornella Semino, Ripan S. Malhi, Alessandro Achilli
Software Mentions: 1
Published: over 4 years ago

10.1186/s43008-019-0013-7

IMA Genome-F 11
Cited by: 11
Author(s): Brenda D. Wingfield, Arista Fourie, M.C. Simpson, Vuyiswa Bushula-Njah, Janneke Aylward, Irene Barnes, Martin Petrus Albertus Coetzee, L.L. Dreyer, Tuan A. Duong, David M. Geiser, Francois Roets, Emma Theodora Steenkamp, Magriet A. van der Nest, Carel van Heerden
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12979-020-00198-6

ARID3a expression in human hematopoietic stem cells is associated with distinct gene patterns in aged individuals
Cited by: 6
Author(s): Michelle Ratliff, Joshua W. Garton, Judith A. James, Carol F. Webb
Software Mentions: 1
Published: almost 5 years ago

10.1186/s13104-017-2985-y

Consideration of non-canonical splice sites improves gene prediction on the Arabidopsis thaliana Niederzenz-1 genome sequence
Cited by: 23
Author(s): Boas Pucker, Daniela Holtgräwe, Bernd Weißhaar
Software Mentions: 1
Published: over 7 years ago

10.7554/eLife.59303

One-shot analysis of translated mammalian lncRNAs with AHARIBO
Cited by: 13
Author(s): L. Minati, Claudia Firrito, Alessia Del Piano, Alberto Peretti, Simone Sidoli, Daniele Peroni, Romina Belli, Francesco Gandolfi, Alessandro Romanel, Paola Bernabò, Jacopo Zasso, Alessandro Quattrone, Graziano Guella, Fabio Lauria, Gabriella Viero, Massimiliano Clamer
Software Mentions: 1
Published: over 4 years ago

10.1016/j.immuni.2019.01.004

Survival of Single Positive Thymocytes Depends upon Developmental Control of RIPK1 Kinase Signaling by the IKK Complex Independent of NF-κB
Cited by: 23
Author(s): Louise V. Webb, Alessandro Barbarulo, Jelle Huysentruyt, Tom Vanden Berghe, Nozomi Takahashi, Steven C. Ley, Peter Vandenabeele, Benedict Seddon
Software Mentions: 1
Published: over 6 years ago

10.1128/MRA.00294-21

Transcriptome RNA Sequencing Data Set of Differential Gene Expression in Escherichia coli BW25113 Wild-Type and <i>slyA</i> Mutant Strains
Cited by: 1
Author(s): Olabisi Ojo, Derrick Scott, BA Iwalokun, Babatunde Odetoyin, Anne Grove
Software Mentions: 1
Published: about 4 years ago

10.1038/s41598-019-47051-5

Transcriptomic analysis of mouse cochleae suffering from gentamicin damage reveals the signalling pathways involved in hair cell regeneration
Cited by: 6
Author(s): Huanju Bai, Lingling Jiang, Xi Wang, Xue Gao, Bing Jie, Xi Chen, Weiqian Wang, Meiguang Zhang, Xinwen Zhang, Zhongming Han, Jin Xu, Shaoju Zeng
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-019-47022-w

Enhanced cardiac repair by telomerase reverse transcriptase over-expression in human cardiac mesenchymal stromal cells
Cited by: 14
Author(s): Thi Yen Loan Le, Hilda A. Pickett, Andrian Yang, Joshua Wk Ho, Sujitha Thavapalachandran, Sindhu Igoor, Sile F. Yang, Melad Farraha, Holly K. Voges, James E. Hudson, Cristobal G. dos Remedios, Tracy M. Bryan, Eddy Kizana, James J.H. Chong
Software Mentions: 1
Published: about 6 years ago

10.3390/ijms22105290

Calvaria Bone Transcriptome in Mouse Models of Osteogenesis Imperfecta
Cited by: 6
Author(s): Pierre Moffatt, Iris Boraschi-Diaz, Juliana Marulanda, Ghalib Bardai, Frank Rauch
Software Mentions: 1
Published: about 4 years ago

10.1016/j.cell.2017.09.042

Universal Patterns of Selection in Cancer and Somatic Tissues
Cited by: 959
Author(s): Iñigo Martincorena, Keiran Raine, Moritz Gerstung, Kevin J. Dawson, Kerstin Haase, Peter Van Loo, Helen Davies, Michael R. Stratton, Peter J. Campbell
Software Mentions: 1
Published: over 7 years ago

10.1186/s40170-021-00246-9

GLUT5 (SLC2A5) enables fructose-mediated proliferation independent of ketohexokinase
Cited by: 11
Author(s): Roger J. Liang, Samuel Taylor, Navid Nahiyaan, Jun-Ho Song, Charles J. Murphy, Ezequiel Dantas, Shu‐Yuan Cheng, Ting-Wei Hsu, Shakti Ramsamooj, Rahul Grover, Seo-Kyoung Hwang, Bryan Ngo, Lewis C. Cantley, Kyu Y. Rhee, Marcus D. Goncalves
Software Mentions: 1
Published: over 4 years ago

10.1128/MRA.00012-19

Near-Complete Genome Sequences of Vesicular Stomatitis Virus Indiana Laboratory Strains HR and T1026R1 and Plaque Isolates 22-20 and 22-25
Cited by: 4
Author(s): Thomas M. Russell, Evan E. Santo, Lisa Golebiewski, Nathan Haseley, Maureen C. Ferran
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-019-46265-x

Genetic basis of functional variability in adhesion G protein-coupled receptors
Cited by: 24
Author(s): Alexander Bernd Knierim, Juliane Röthe, Mehmet Volkan Çakır, Vera Lede, Caroline Wilde, Ines Liebscher, Doreen Thor, Torsten Schöneberg
Software Mentions: 1
Published: almost 6 years ago

10.3390/cancers11091306

Clinical Significance of SERPINA1 Gene and Its Encoded Alpha1-antitrypsin Protein in NSCLC
Cited by: 40
Author(s): Evrim Ercetin, Sarah Richtmann, Beatriz Martínez Delgado, Gema Gómez-Mariano, Sabine Wrenger, Elena Korenbaum, Bin Liu, David S. DeLuca, Mark P. Kühnel, Danny Jonigk, Kadriya Yuskaeva, Arne Warth, Thomas Muley, Hauke Winter, Michael Meister, Tobias Welte, Sabina Janciauskiene, Marc A. Schneider
Software Mentions: 1
Published: almost 6 years ago

10.1128/MRA.01062-18

Annotated Draft Genome Sequence of the Apple Scab Pathogen Venturia inaequalis
Cited by: 12
Author(s): Tom Passey, Andrew D. Armitage, Xiangming Xu
Software Mentions: 1
Published: almost 7 years ago

10.1186/s13027-019-0253-6

A meta-analysis on genetic variability of RT/HBsAg overlapping region of hepatitis B virus (HBV) isolates of Bangladesh
Cited by: 13
Author(s): Md. Golzar Hossain, Keiji Ueda
Software Mentions: 1
Published: over 5 years ago

10.1186/1471-244X-12-25

Long acting risperidone in Australian patients with chronic schizophrenia: 24-month data from the e-STAR database
Cited by: 13
Author(s): Tim Lambert, B. T. Emmerson, Harry Hustig, Sophie Resseler, An Jacobs, Belinda Butcher
Software Mentions: 1
Published: over 13 years ago

10.3390/insects10120442

Characterization of Dendrolimus houi Lajonquiere (Lepidoptera: Lasiocampidae) Transcriptome across All Life Stages
Cited by: 7
Author(s): Xuelei Han, Ciding Lu, Scott M. Geib, Jia Wei Zheng, Songqing Wu, Feiping Zhang, Guangwen Liang
Software Mentions: 1
Published: over 5 years ago

10.1186/2049-3002-2-2

Inhibition of 6-phosphofructo-2-kinase (PFKFB3) induces autophagy as a survival mechanism
Cited by: 80
Author(s): Alden C. Klarer, Julie O’Neal, Yoannis Imbert-Fernandez, Amy Clem, S.E. Ellis, Jennifer A. Clark, Brian F. Clem, Jason Chesney, Sucheta Telang
Software Mentions: 1
Published: over 11 years ago

10.1186/s12920-020-00836-4

Differential alternative splicing between hepatocellular carcinoma with normal and elevated serum alpha-fetoprotein
Cited by: 5
Author(s): Young–Joo Jin, Habtamu Minassie Aycheh, Seonggyun Han, J. Edward Chamberlin, Jaehang Shin, Seyoun Byun, Younghee Lee
Software Mentions: 1
Published: over 4 years ago

10.3390/cancers13092051

A Novel Multidrug-Resistant Cell Line from an Italian Intrahepatic Cholangiocarcinoma Patient
Cited by: 8
Author(s): Caterina Peraldo-Neia, Annamaria Massa, F. De Vita, Marco Basiricò, Chiara Raggi, Paola Bernabei, Paola Ostano, Laura Casorzo, Mara Panero, Francesco Leone, Giuliana Cavalloni, Massimo Aglietta
Software Mentions: 1
Published: over 4 years ago

10.3390/diagnostics9040219

A Hierarchical Machine Learning Model to Discover Gleason Grade-Specific Biomarkers in Prostate Cancer
Cited by: 17
Author(s): Osama Hamzeh, Abedalrhman Alkhateeb, Julia Zheng, Srinath Kandalam, Crystal Pui Sha Leung, Govindaraja Atikukke, Dora Cavallo-Medved, Nallasivam Palanisamy, Luis Rueda
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-48089-1

Transcriptomic Profiling of Adipose Derived Stem Cells Undergoing Osteogenesis by RNA-Seq
Cited by: 29
Author(s): Shahensha Shaik, Elizabeth C. Martin, Daniel J. Hayes, Jeffrey M. Gimble, Ram V. Devireddy
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-019-47357-4

Extracellular endonucleases in the midgut of Myzus persicae may limit the efficacy of orally delivered RNAi
Cited by: 18
Author(s): Amol Bharat Ghodke, Robert T. Good, John F. Golz, Derek Russell, Owain Edwards, Charles Robin
Software Mentions: 1
Published: almost 6 years ago