cran: STAR | Projects | Ecosyste.ms: Papers

10.1371/journal.pgen.1003714

A Shift to Organismal Stress Resistance in Programmed Cell Death Mutants
Cited by: 36
Author(s): Meredith E. Judy, Ayumi Nakamura, Anne Huang, Harli Grant, Helen McCurdy, Kurt F. Weiberth, Fuying Gao, Giovanni Coppola, Cynthia Kenyon, Aimee W. Kao
Software Mentions: 1
Published: about 11 years ago

10.1007/s10162-012-0323-6

Effects of Frequency Discrimination Training on Tinnitus: Results from Two Randomised Controlled Trials
Cited by: 33
Author(s): Derek J. Hoare, Victoria L. Kowalkowski, Deborah A. Hall
Software Mentions: 1
Published: over 12 years ago

10.3390/ijerph17238845

Effects of an Educational Program for Professional Caregivers on Behavioral Alterations in Nursing Home Residents: Pilot Study
Cited by: 4
Author(s): Carolina Pinazo-Clapés, Sacramento Pinazo Hernandis, Alicia Sales
Software Mentions: 1
Published: almost 4 years ago

10.1101/2021.02.17.431704

Host-virus chimeric events in SARS-CoV2 infected cells are infrequent and artifactual
Cited by: 3
Author(s): Bingyu Yan, Srishti Chakravorty, Carmen Mirabelli, Luopin Wang, Jorge L Trujillo-Ochoa, Daniel Chauss, Dhaneshwar Kumar, Michail S Lionakis, Matthew R. Olson, Christiane E. Wobus, Behdad Afzali, Majid Kazemian
Software Mentions: 1
Published: almost 4 years ago

10.3390/biology10080706

New Approach for Detection of Normal Alternative Splicing Events and Aberrant Spliceogenic Transcripts with Long-Range PCR and Deep RNA Sequencing
Cited by: 2
Author(s): Vita Šetrajčič Dragoš, Vida Stegel, Ana Blatnik, Gašper Klančar, Mateja Krajc, Srdjan Novaković
Software Mentions: 1
Published: over 3 years ago

10.18632/oncotarget.24511

Mandatory role of HMGA1 in human airway epithelial normal differentiation and post-injury regeneration
Cited by: 7
Author(s): Haijun Zhang, Jing Yang, Matthew S. Walters, Michelle R. Staudt, Yael Strulovici-Barel, Jacqueline Salit, Jason G. Mezey, Philip L. Leopold, Ronald G. Crystal
Software Mentions: 1
Published: almost 7 years ago

10.1128/mBio.00778-17

Endoplasmic Reticulum Stress Caused by Lipoprotein Accumulation Suppresses Immunity against Bacterial Pathogens and Contributes to Immunosenescence
Cited by: 31
Author(s): Jogender Singh, Alejandro Aballay
Software Mentions: 1
Published: over 7 years ago

10.3390/biology10070626

Revealing New Landscape of Turbot (Scophthalmus maximus) Spleen Infected with Aeromonas salmonicida through Immune Related circRNA-miRNA-mRNA Axis
Cited by: 4
Author(s): Ting Xue, Yiping Liu, Min Cao, Mengyu Tian, Lu Zhang, Beibei Wang, Xiaoli Liu, Chao Li
Software Mentions: 1
Published: over 3 years ago

10.1073/pnas.2100694118

Longer or shorter spines: Reciprocal trait evolution in stickleback via triallelic regulatory changes in Stanniocalcin2a
Cited by: 14
Author(s): Garrett A. Roberts Kingman, David Lee, Felicity C. Jones, Danielle Desmet, Michael A. Bell, David M. Kingsley
Software Mentions: 1
Published: over 3 years ago

10.1073/pnas.2026605118

An introgressed gene causes meiotic drive inNeurospora sitophila
Cited by: 22
Author(s): Jesper Svedberg, Aaron A. Vogan, Nicholas A. Rhoades, Dilini Sarmarajeewa, David J. Jacobson, Martin Lascoux, Thomas M. Hammond, Hanna Johannesson
Software Mentions: 1
Published: over 3 years ago

10.1073/pnas.1908252116

Extracellular RNA in a single droplet of human serum reflects physiologic and disease states
Cited by: 43
Author(s): Zixu Zhou, Qiuyang Wu, Zhangming Yan, Haizi Zheng, Chien-Ju Chen, Yuan Liu, Zhijie Qi, Riccardo Calandrelli, Zhe Chen, Shu Chien, Hua Su, Sheng Zhong
Software Mentions: 1
Published: about 5 years ago

10.1128/mBio.02765-18

Mucor circinelloides Thrives inside the Phagosome through an Atf-Mediated Germination Pathway
Cited by: 26
Author(s): Carlos Pérez-Arques, María Isabel Navarro-Mendoza, Laura Murcia, Carlos Lax, Pablo Martínez-García, Joseph Heitman, Francisco E. Nicolás
Software Mentions: 1
Published: over 5 years ago

10.1128/mBio.00437-19

Mutations in hmg1 , Challenging the Paradigm of Clinical Triazole Resistance in Aspergillus fumigatus
Cited by: 76
Author(s): Jeffrey M. Rybak, Wenbo Ge, Nathan P. Wiederhold, Josie E. Parker, Steven L. Kelly, P. David Rogers, Jarrod R. Fortwendel
Software Mentions: 1
Published: over 5 years ago

10.1128/mBio.01362-19

Pseudomonas aeruginosa Regulatory Protein AnvM Controls Pathogenicity in Anaerobic Environments and Impacts Host Defense
Cited by: 13
Author(s): Yingchao Zhang, Chunkui Zhou, Qinqin Pu, Qun Wu, Shirui Tan, Xiaolong Shao, Weitong Zhang, Yingpeng Xie, Rongpeng Li, Xue‐Jie Yu, Rui Wang, Liang Zhang, Min Wu, Xin Deng
Software Mentions: 1
Published: about 5 years ago

10.3390/biology10060557

Genome-Wide Atlas of Promoter Expression Reveals Contribution of Transcribed Regulatory Elements to Genetic Control of Disuse-Mediated Atrophy of Skeletal Muscle
Cited by: 1
Author(s): Sergey S. Pintus, Ilya R. Akberdin, Ivan S. Yevshin, Pavel A. Makhnovskii, O. V. Tyapkina, IslamR Nigmetzyanov, Л. Ф. Нуруллин, Ruslan Devyatiyarov, Elena Shagimardanova, D. V. Popov, Fedor A. Kolpakov, Oleg Gusev, Guzel Gazizova
Software Mentions: 1
Published: over 3 years ago

10.1073/pnas.1907031116

An influenza virus-triggered SUMO switch orchestrates co-opted endogenous retroviruses to stimulate host antiviral immunity
Cited by: 73
Author(s): Nora Schmidt, Patricia Domingues, Filip Gołębiowski, Corinna Patzina, Michael H. Tatham, Ronald T. Hay, Benjamin G. Hale
Software Mentions: 1
Published: over 5 years ago

10.1073/pnas.1721434116

Microglia are effector cells of CD47-SIRPα antiphagocytic axis disruption against glioblastoma
Cited by: 166
Author(s): Gregor Hütter, Johanna Theruvath, Claus Moritz Graef, Michael Zhang, Matthew K. Schoen, Eva Maria Manz, Mariko L. Bennett, Andrew Olson, Tej D. Azad, Rahul Sinha, Carmel T. Chan, Suzana Assad Kahn, Sharareh Gholamin, Christy Wilson, Gerald A. Grant, Joy Q. He, Irving L. Weissman, Siddhartha Mitra, Samuel Cheshier
Software Mentions: 1
Published: almost 6 years ago

10.1089/pop.2017.0109

Need for Comprehensive Health Care Quality Measures for Older Adults
Cited by: 16
Author(s): MacLeodStephanie, SchwebkeKay, HawkinsKevin, RuizJoann, HooEmma, S YehCharlotte
Software Mentions: 1
Published: over 6 years ago

10.3390/polym13152503

Kinetical Study, Thermo-Mechanical Characteristics and Recyclability of Epoxidized Camelina Oil Cured with Antagonist Structure (Aliphatic/Aromatic) or Functionality (Acid/Amine) Hardeners
Cited by: 10
Author(s): Chiara Di Mauro, Aratz Genua, Alice Mija
Software Mentions: 1
Published: over 3 years ago

10.3390/polym12092136

3D Printed Silicone Meniscus Implants: Influence of the 3D Printing Process on Properties of Silicone Implants
Cited by: 29
Author(s): Eric Luis, Houwen Matthew Pan, Anil K. Bastola, Ram Bajpai, Swee Leong Sing, Juha Song, Wai Yee Yeong
Software Mentions: 1
Published: about 4 years ago

10.3390/polym12081642

Synthesis and Characterisation of Acrylic Resin-Al Powder Composites Suitable for Additive Manufacturing
Cited by: 4
Author(s): J. J. Relinque, Ismael Romero‐Ocaña, Francisco J. Navas‐Martos, Francisco Delgado, Manuel Domínguez, S. I. Molina
Software Mentions: 1
Published: over 4 years ago

10.3390/polym12051148

Epoxy-Anhydride Vitrimers from Aminoglycidyl Resins with High Glass Transition Temperature and Efficient Stress Relaxation
Cited by: 26
Author(s): Michael Giebler, Clemens Sperling, Simon Kaiser, Ivica Đuretek, Sandra Schlögl
Software Mentions: 1
Published: over 4 years ago

10.1128/mBio.00053-20

New Host-Directed Therapeutics for the Treatment of Clostridioides difficile Infection
Cited by: 7
Author(s): Jourdan A. Andersson, Alex G. Peniche, Cristi L. Galindo, Prapaporn Boonma, Jian Sha, Ruth Ann Luna, Tor Savidge, Ashok K. Chopra, Sara M. Dann
Software Mentions: 1
Published: over 4 years ago

10.3390/biology9080221

The Teleost Thymus in Health and Disease: New Insights from Transcriptomic and Histopathological Analyses of Turbot, Scophthalmus maximus
Cited by: 8
Author(s): Paolo Ronza, Diego Robledo, Ana Losada, Roberto Bermúdez, Belén G. Pardo, Paulino Martı́nez, María Isabel Quiroga
Software Mentions: 1
Published: over 4 years ago

10.3390/polym12020467

Methods for Determining the Thermal Transfer in Phase-Changing Materials (PCMs)
Cited by: 2
Author(s): Vasile Bendic, Dan Dobrotă, Ionel Simion, Emilia Bălan, Nicoleta-Elisabeta Pascu, Dana Iuliana Tilina
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.ppat.1009908

Human parainfluenza virus type 1 regulates cholesterol biosynthesis and establishes quiescent infection in human airway cells
Cited by: 1
Author(s): Yoichi Kurebayashi, Shringkhala Bajimaya, Masahiro Watanabe, Nicholas Lim, Michael M. Lutz, Megan M Dunagan, Toru Takimoto
Software Mentions: 1
Published: about 3 years ago

10.1093/gigascience/gix081

Transcriptional mapping of the primary somatosensory cortex upon sensory deprivation
Cited by: 8
Author(s): Koen Kole, Yutaro Komuro, Jan Provazník, Jelena Pistolic, Vladimı́r Beneš, Paul Tiesinga, Tansu Celikel
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pcbi.1007252

On the optimal design of metabolic RNA labeling experiments
Cited by: 14
Author(s): Alexey Uvarovskii, Isabel S. Naarmann-de Vries, Christoph Dieterich
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pcbi.1004448

One Size Doesn't Fit All - RefEditor: Building Personalized Diploid Reference Genome to Improve Read Mapping and Genotype Calling in Next Generation Sequencing Studies
Cited by: 8
Author(s): Shuai Yuan, H. Richard Johnston, Guosheng Zhang, Yun Li, Yi‐Juan Hu, Zhaohui S. Qin
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pbio.2002623

Transcriptome analysis of hypoxic cancer cells uncovers intron retention in EIF2B5 as a mechanism to inhibit translation
Cited by: 39
Author(s): Lauren Brady, Hejia Wang, Caleb M. Radens, Yue Bi, Milan Radovich, Amit Maity, Cristina Ivan, Mircea Ivan, Yoseph Barash, Constantinos Koumenis
Software Mentions: 1
Published: about 7 years ago

10.1093/gigascience/giy010

The genome sequence and transcriptome of Potentilla micrantha and their comparison to Fragaria vesca (the woodland strawberry)
Cited by: 37
Author(s): Matteo Buti, Marco Moretto, Elena Barghini, Flavia Mascagni, Lucia Natali, Matteo Brilli, Alexandre Lomsadze, Paolo Sonego, L. Giongo, Michael Alonge, Riccardo Velasco, Claudio Varotto, Nada Šurbanovski, Mark Borodovsky, J. A. Ward, Kristof Engelen, Andrea Cavallini, Alessandro Cestaro, Daniel J. Sargent
Software Mentions: 1
Published: almost 8 years ago

10.1093/gigascience/giy008

Draft genome assembly of the Bengalese finch, Lonchura striata domestica, a model for motor skill variability and learning
Cited by: 12
Author(s): Bradley M. Colquitt, David G. Mets, Michael S. Brainard
Software Mentions: 1
Published: almost 7 years ago

10.1128/mBio.01006-21

The SARS-CoV-2 Transcriptome and the Dynamics of the S Gene Furin Cleavage Site in Primary Human Airway Epithelia
Cited by: 12
Author(s): Wei Zou, Min Xiong, Siyuan Hao, Elizabeth Yan Zhang, Nathalie Baumlin, Michael D. Kim, Matthias Salathé, Ziying Yan, Jianming Qiu
Software Mentions: 1
Published: over 3 years ago

10.1128/mBio.00967-21

Identification of Oxygen-Independent Pathways for Pyridine Nucleotide and Coenzyme A Synthesis in Anaerobic Fungi by Expression of Candidate Genes in Yeast
Cited by: 6
Author(s): Thomas Perli, Aurin M. Vos, Jonna Bouwknegt, Wijb J C Dekker, Sanne J Wiersma, Christiaan Mooiman, Raúl A. Ortiz‐Merino, Jean‐Marc Daran, Jack T. Pronk
Software Mentions: 1
Published: over 3 years ago

10.1093/gigascience/gix122

VaDiR: an integrated approach to Variant Detection in RNA
Cited by: 14
Author(s): Lisa Neums, Seiji Suenaga, Peter Beyerlein, Sara Anders, Devin C. Koestler, Andrea Mariani, Jeremy Chien
Software Mentions: 1
Published: almost 7 years ago

10.1093/gigascience/gix035

A high-coverage draft genome of the mycalesine butterfly Bicyclus anynana
Cited by: 45
Author(s): Reuben W. Nowell, Benjamin Elsworth, Vicencio Oostra, Bas J. Zwaan, Christopher W. Wheat, Marjo Saastamoinen, Ilik J. Saccheri, Arjen E Van’t Hof, Bethany R. Wasik, Heidi Connahs, Muhammad Aslam, Sujai Kumar, Richard Challis, Antónia Monteiro, Paul M. Brakefield, Mark Blaxter
Software Mentions: 1
Published: over 7 years ago

10.1093/gigascience/gix012

RED-ML: a novel, effective RNA editing detection method based on machine learning
Cited by: 27
Author(s): Heng Xiong, Dongbing Liu, Qiye Li, Mengyue Lei, Liqin Xu, Liang Wu, Zongji Wang, Shancheng Ren, Wangsheng Li, Min Xia, Lihua Lü, Haorong Lu, Yong Hou, Shida Zhu, Xin Liu, Ying Sun, Jian Wang, Huanming Yang, Kui Wu, Xun Xu, Leo J. Lee
Software Mentions: 1
Published: over 7 years ago

10.1186/s13742-015-0105-2

Colib’read on galaxy: a tools suite dedicated to biological information extraction from raw NGS reads
Cited by: 2
Author(s): Yvan Le Bras, Olivier Collin, Cyril Monjeaud, Vincent Lacroix, Éric Rivals, Claire Lemaitre, Vincent Miele, Gustavo Sacomoto, Camille Marchet, Bastien Cazaux, Amal Zine El Aabidine, Leena Salmela, Susete Alves‐Carvalho, Alexan Andrieux, Raluca Uricaru, Pierre Peterlongo
Software Mentions: 1
Published: almost 9 years ago

10.1016/j.gpb.2020.10.005

Chinese Glioma Genome Atlas (CGGA): A Comprehensive Resource with Functional Genomic Data from Chinese Glioma Patients
Cited by: 384
Author(s): Zheng Zhao, Kenan Zhang, Qiangwei Wang, Guanzhang Li, Fan Zeng, Ying Zhang, Fan Wu, Rui‐Chao Chai, Zheng Wang, Chuanbao Zhang, Wei Zhang, Zhaoshi Bao, Tao Jiang
Software Mentions: 1
Published: almost 4 years ago

10.1128/mBio.01816-21

Orientia tsutsugamushi Nucleomodulin Ank13 Exploits the RaDAR Nuclear Import Pathway To Modulate Host Cell Transcription
Cited by: 10
Author(s): Haley E. Adcox, Amanda L. Hatke, Shelby E. Andersen, S. Dutta Gupta, Nathan B Otto, Mary M. Weber, Richard T. Marconi, Jason A. Carlyon
Software Mentions: 1
Published: about 3 years ago

10.1128/mSphere.00555-17

The Human Gut Microbial Metabolome Modulates Fungal Growth via the TOR Signaling Pathway
Cited by: 45
Author(s): Carlos García, Faïza Tebbji, Michelle Daigneault, Ningning Liu, Julia R. Köhler, Emma Allen‐Vercoe, Adnane Sellam
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pbio.2004718

Polarization-resolved microscopy reveals a muscle myosin motor-independent mechanism of molecular actin ordering during sarcomere maturation
Cited by: 40
Author(s): Olivier Loison, Manuela Weitkunat, Aynur Kaya-Çopur, Camila Nascimento Alves, Till Matzat, Maria L. Spletter, Stefan Luschnig, Sophie Brasselet, Pierre-François Lenne, Frank Schnorrer
Software Mentions: 1
Published: over 6 years ago

10.1128/mSphere.00386-19

Optimizing Systems for Cas9 Expression in Toxoplasma gondii
Cited by: 32
Author(s): Benedikt M. Markus, George W. Bell, Hernán Lorenzi, Sebastian Lourido
Software Mentions: 1
Published: over 5 years ago

10.1007/s11104-017-3265-2

Depth of soil compaction predominantly affects rice yield reduction by reproductive-stage drought at varietal screening sites in Bangladesh, India, and Nepal
Cited by: 10
Author(s): Suresh Prasad Singh, Abhinav Jain, M. S. Anantha, Santosh Raj Tripathi, Subarna Sharma, Santosh Kumar, A. Prasad, Bhawana Sharma, Biswajit Karmakar, Rudra Bhattarai, Surojit Das, Satish Kumar Singh, V. V. Shenoy, R. Chandra Babu, S. Robin, Padmini Swain, J. L. Dwivedi, Ram Baran Yadaw, Nimai Prasad Mandal, T. Ram, K. K. Mishra, Satish Verulkar, Tamal Lata Aditya, Krishna Prasad K, Puvvada Perraju, Ram Krishna Mahato, Sheetal Sharma, K. Anitha Raman, Arvind Kumar, Amelia Henry
Software Mentions: 1
Published: over 7 years ago

10.3390/plants9101393

In Silico Analyses of Autophagy-Related Genes in Rapeseed (Brassica napus L.) under Different Abiotic Stresses and in Various Tissues
Cited by: 5
Author(s): Elham Mehri Eshkiki, Zahra Hajiahmadi, Amin Abedi, Mojtaba Kordrostami, Cédric Jacquard
Software Mentions: 1
Published: about 4 years ago

10.1016/j.gpb.2016.02.003

Profiling and Validation of the Circular RNA Repertoire in Adult Murine Hearts
Cited by: 74
Author(s): Tobias Jakobi, Lisa F. Czaja-Hasse, Richard Reinhardt, Christoph Dieterich
Software Mentions: 1
Published: over 8 years ago

10.5808/GI.2020.18.1.e10

Accelerating next generation sequencing data analysis: an evaluation of optimized best practices for Genome Analysis Toolkit algorithms
Cited by: 29
Author(s): Karl R. Franke, Erin L. Crowgey
Software Mentions: 1
Published: over 4 years ago

10.5808/GI.2019.17.3.e32

Comparison of the MGISEQ-2000 and Illumina HiSeq 4000 sequencing platforms for RNA sequencing
Cited by: 29
Author(s): Sol A Jeon, Jong‐Lyul Park, Jong-Hwan Kim, Jeong Hwan Kim, Yong‐Sung Kim, Jin Cheon Kim, Seon‐Young Kim
Software Mentions: 1
Published: about 5 years ago

10.3390/plants10091810

Biological and Transcriptomic Characterization of Pre-Haustorial Resistance to Sunflower Broomrape (Orobanche cumana W.) in Sunflowers (Helianthus annuus)
Cited by: 4
Author(s): Dana Sisou, Yaakov Tadmor, Dina Plakhine, Hammam Ziadna, Sariel Hübner, Hanan Eizenberg
Software Mentions: 1
Published: about 3 years ago

10.5808/GI.2019.17.1.e3

Identification of ERBB Pathway-Activated Cells in Triple-Negative Breast Cancer
Cited by: 8
Author(s): Soo Young Cho
Software Mentions: 1
Published: over 5 years ago

10.1186/s13073-020-00746-1

The rate and spectrum of mosaic mutations during embryogenesis revealed by RNA sequencing of 49 tissues
Cited by: 21
Author(s): Francesc Muyas, Luís Zapata, Roderic Guigó, Stephan Ossowski
Software Mentions: 1
Published: over 4 years ago

10.1186/s13073-019-0635-9

TCF21 and AP-1 interact through epigenetic modifications to regulate coronary artery disease gene expression
Cited by: 41
Author(s): Quanyi Zhao, Robert Wirka, Trieu Nguyen, Manabu Nagao, Paul Cheng, Clint L. Miller, Juyong Brian Kim, Milos Pjanic, Thomas Quertermous
Software Mentions: 1
Published: over 5 years ago

10.1186/s13058-020-01361-z

CRIPTO antagonist ALK4L75A-Fc inhibits breast cancer cell plasticity and adaptation to stress
Cited by: 4
Author(s): Ozlen Balcioglu, Richard E. Heinz, D.W. Freeman, Brooke L. Gates, Berhane M. Hagos, Evan Booker, Elnaz Mirzaei Mehrabad, Hyrum T Diesen, Kishan Bhakta, Supraja Ranganathan, Masami Kachi, Mathias Leblanc, Peter C. Gray, Benjamin T. Spike
Software Mentions: 1
Published: about 4 years ago

10.1128/mSystems.00204-20

Overexpression of the Small RNA PA0805.1 in Pseudomonas aeruginosa Modulates the Expression of a Large Set of Genes and Proteins, Resulting in Altered Motility, Cytotoxicity, and Tobramycin Resistance
Cited by: 13
Author(s): Shannon R. Coleman, Maren L. Smith, Victor Spicer, Ying Lao, Neeloffer Mookherjee, Robert E. W. Hancock
Software Mentions: 1
Published: over 4 years ago

10.1186/s13073-018-0567-9

Single-cell transcriptome analysis of lineage diversity in high-grade glioma
Cited by: 157
Author(s): Jinzhou Yuan, Hanna Mendes Levitin, Véronique Frattini, Erin C. Bush, Deborah Boyett, Jorge Samanamud, Michele Ceccarelli, Athanassios Dovas, George Zanazzi, Peter Canoll, Jeffrey N. Bruce, Anna Lasorella, Antonio Iavarone, Peter A. Sims
Software Mentions: 1
Published: over 6 years ago

10.1186/s13073-015-0152-4

Calling genotypes from public RNA-sequencing data enables identification of genetic variants that affect gene-expression levels
Cited by: 71
Author(s): Patrick Deelen, Daria V. Zhernakova, Mark de Haan, Marijke van der Sijde, Marc Jan Bonder, Juha Karjalainen, K. Joeri van der Velde, Kristin M. Abbott, Jingyuan Fu, Cisca Wijmenga, Richard J. Sinke, Morris A. Swertz, Lude Franke
Software Mentions: 1
Published: over 9 years ago

10.1093/gbe/evab178

The Genome of the Haptophyte Diacronema lutheri (Pavlova lutheri, Pavlovales): A Model for Lipid Biosynthesis in Eukaryotic Algae
Cited by: 5
Author(s): Chris J. Hulatt, René H. Wijffels, Matthew C. Posewitz
Software Mentions: 1
Published: over 3 years ago

10.18632/oncotarget.26673

The X-linked tumor suppressor TSPX downregulates cancer-drivers/oncogenes in prostate cancer in a C-terminal acidic domain dependent manner
Cited by: 5
Author(s): Tatsuo Kido, Yunmin Li, Yuichiro Tanaka, Rajvir Dahiya, Yun‐Fai Chris Lau
Software Mentions: 1
Published: almost 6 years ago

10.1128/mSystems.00898-20

Endogenous Metabolites Released by Sanitized Sprouting Alfalfa Seed Inhibit the Growth of Salmonella enterica
Cited by: 2
Author(s): Ga-Hee Ban, Yue Dai, Tao Huan, Alfred Ke, Pascal Delaquis, Siyun Wang
Software Mentions: 1
Published: over 3 years ago

10.1093/gbe/evaa235

A New Dinoflagellate Genome Illuminates a Conserved Gene Cluster Involved in Sunscreen Biosynthesis
Cited by: 27
Author(s): Eiichi Shoguchi, Girish Beedessee, Kanako Hisata, Isao Tada, Haruhi Narisoko, Noriyuki Satoh, Masanobu Kawachi, Chuya Shinzato
Software Mentions: 1
Published: about 4 years ago

10.1093/gbe/evaa195

Comprehensive Transcriptome of the Maize Stalk Borer,Busseola fusca, from Multiple Tissue Types, Developmental Stages, and Parasitoid Wasp Exposures
Cited by: 1
Author(s):
Software Mentions: 1
Published: about 4 years ago

10.1093/gbe/evz176

Multilayered Tuning of Dosage Compensation and Z-Chromosome Masculinization in the Wood White (Leptidea sinapis) Butterfly
Cited by: 4
Author(s): Lars Höök, Luis Leal, Venkat Talla, Niclas Backström
Software Mentions: 1
Published: over 5 years ago

10.1093/gbe/evz141

The Genome Sequence of the Anthelmintic-Susceptible New Zealand Haemonchus contortus
Cited by: 25
Author(s): Nikola Palevich, Paul Maclean, Abdul Baten, Richard W. Scott, David M Leathwick
Software Mentions: 1
Published: over 5 years ago

10.1186/s13059-021-02434-8

Specific splice junction detection in single cells with SICILIAN
Cited by: 12
Author(s): Roozbeh Dehghannasiri, Julia Eve Olivieri, Ana Damljanovic, Julia Salzman
Software Mentions: 1
Published: over 3 years ago

10.1186/s13059-021-02399-8

LIQA: long-read isoform quantification and analysis
Cited by: 37
Author(s): Yu Hu, Fang Li, Xuelian Chen, Jiang Zhong, Mingyao Li, Kai Wang
Software Mentions: 1
Published: over 3 years ago

10.1186/s13059-021-02350-x

Intergenic RNA mainly derives from nascent transcripts of known genes
Cited by: 13
Author(s): Antonella Federico, Julian A. Zagalak, Jan Attig, Jernej Ule, Nicholas M. Luscombe
Software Mentions: 1
Published: over 3 years ago

10.18632/oncotarget.26797

Clinical validation of the tempus xT next-generation targeted oncology sequencing assay
Cited by: 101
Author(s): Nike Beaubier, Robert Tell, Denise Lau, Jerod Parsons, Stephen J. Bush, Jason Perera, Shelly Sorrells, Timothy Baker, Alan L. Chang, Jackson Michuda, Catherine Iguartua, Shelley M. MacNeil, Kaanan P. Shah, Philip Ellis, Kimberly Yeatts, Brett Mahon, Timothy J. Taxter, Martin Bontrager, Aly A. Khan, Robert Huether, Eric Lefkofsky, Kevin P. White
Software Mentions: 1
Published: over 5 years ago

10.18632/oncotarget.26808

Large-scale in-silico identification of a tumor-specific antigen pool for targeted immunotherapy in triple-negative breast cancer
Cited by: 9
Author(s): Jessica Kaufmann, Nicolas Wentzensen, Titus J. Brinker, Niels Grabe
Software Mentions: 1
Published: over 5 years ago

10.1186/s13059-020-02180-3

Massive gene presence-absence variation shapes an open pan-genome in the Mediterranean mussel
Cited by: 89
Author(s): Marco Gerdol, Rebeca Moreira, Fernando Cruz, Jèssica Gómez‐Garrido, Anna Vlasova, Umberto Rosani, Paola Venier, Miguel A. Naranjo‐Ortiz, Maria Murgarella, Samuele Greco, Pablo Balseiro, André Corvelo, Leonor Frías, Marta Gut, Toni Gabaldón, Alberto Pallavicini, Carlos Canchaya, Beatriz Novoa, Tyler Alioto, David Posada, António Figueras
Software Mentions: 1
Published: about 4 years ago

10.1186/s13059-020-02094-0

Single-cell RNA-seq analysis reveals ploidy-dependent and cell-specific transcriptome changes in Arabidopsis female gametophytes
Cited by: 52
Author(s): Qingxin Song, Atsumi Ando, Ning Jiang, Yoko Ikeda, Z Jeffrey Chen
Software Mentions: 1
Published: over 4 years ago

10.1186/s13058-020-01300-y

New generation breast cancer cell lines developed from patient-derived xenografts
Cited by: 25
Author(s): Jessica Finlay-Schultz, Britta M. Jacobsen, Duncan Riley, Kiran Paul, Scott A. Turner, Andrea Ferreira‐Gonzalez, J. Chuck Harrell, Peter Kabos, Carol A. Sartorius
Software Mentions: 1
Published: over 4 years ago

10.3389/fpubh.2021.653543

Challenges of HIV Self-Test Distribution for Index Testing When HIV Status Disclosure Is Low: Preliminary Results of a Qualitative Study in Bamako (Mali) as Part of the ATLAS Project
Cited by: 7
Author(s): Sokhna Boye, Seydou Bouaré, Odette Ky-Zerbo, Nicolas Rouveau, Arlette Simo Fotso, Marc d’Elbée, Romain Silhol, Mathieu Maheu‐Giroux, Anthony Vautier, G. Breton, Abdelaye Keita, Anne Bekelynck, Alice Desclaux, Joseph Larmarange, Dolorès Pourette
Software Mentions: 1
Published: over 3 years ago

10.3389/fpubh.2021.593453

Sustainable Behavior Change for Health Supported by Person-Tailored, Adaptive, Risk-Aware Digital Coaching in a Social Context: Study Protocol for the STAR-C Research Programme
Cited by: 3
Author(s): Nawi Ng, Malin Eriksson, Esteban Guerrero, Carina Gustafsson, John Kinsman, Jens Lindberg, Helena Lindgren, Kristina Lindvall, Anna Sofia Lundgren, Göran Lönnberg, Klas-Göran Sahlén, Ailiana Santosa, Linda Richter Sundberg, Lars Weinehall, Patrik Wennberg
Software Mentions: 1
Published: over 3 years ago

10.1111/bjd.16573

Inherited pulmonary cylindromas: extending the phenotype of CYLD mutation carriers
Cited by: 8
Author(s): Sarah Madeline Brown, M. Arefi, Robert Stones, PS Loo, Sion Barnard, C. A. Bloxham, Niki Stefanos, J.A.A. Langtry, S. A. Worthy, Eduardo Calonje, Akhtar Husain, Neil Rajan
Software Mentions: 1
Published: over 6 years ago

10.3389/fpsyg.2019.02026

Auditory Stimulation Training With Technically Manipulated Musical Material in Preschool Children With Specific Language Impairments: An Explorative Study
Cited by: 7
Author(s): Ingo Roden, Kaija Früchtenicht, Gunter Kreutz, Friedrich Linderkamp, Dietmar Grube
Software Mentions: 1
Published: about 5 years ago

10.3389/fpsyg.2021.629231

Assessment Methods for Service-Learning Projects in Engineering in Higher Education: A Systematic Review
Cited by: 7
Author(s): Marián Queiruga-Dios, María Jesús Santos Sánchez, Miguel Ángel Queiruga Dios, Pedro Mauricio Acosta Castellanos, Araceli Queiruga Dios
Software Mentions: 1
Published: over 3 years ago

10.3389/fpsyg.2015.00064

Children with speech sound disorder: comparing a non-linguistic auditory approach with a phonological intervention approach to improve phonological skills
Cited by: 6
Author(s): Cristina Ferraz Borges Murphy, Luciana O. Pagan-Neves, HaydÃ©e F. Wertzner, Eliane Schochat
Software Mentions: 1
Published: almost 10 years ago

10.3389/fpsyt.2020.00779

Engaging Adults Experiencing Homelessness in Recovery Education: A Qualitative Analysis of Individual and Program Level Enabling Factors
Cited by: 5
Author(s): Bushra Khan, Nadine Reid, Rebecca Brown, Nicole Kozloff, Vicky Stergiopoulos
Software Mentions: 1
Published: over 4 years ago

10.3389/fpsyt.2020.00276

Functional Neuroimaging in Psychiatry—Aiding in Diagnosis and Guiding Treatment. What the American Psychiatric Association Does Not Know
Cited by: 28
Author(s): Theodore A. Henderson, Muriel J. van Lierop, Mary Kay McLean, J.M. Uszler, John F. Thornton, Yin-Hui Siow, Dan G. Pavel, Joe Cardaci, Philip Cohen
Software Mentions: 1
Published: over 4 years ago

10.3389/fpsyt.2020.565896

Contextualized School-Based Cognitive Behavioral Therapy (CBT) Intervention for Malaysian Secondary School Students
Cited by: 0
Author(s): Jo Anne Saw, Cai Lian Tam, Vanlal Thanzami, Gregory Bonn
Software Mentions: 1
Published: almost 4 years ago

10.7554/eLife.44702

CNS myelination and remyelination depend on fatty acid synthesis by oligodendrocytes
Cited by: 82
Author(s): Penelope Dimas, Laura Montani, Jorge A. Pereira, Daniel Antunes Moreno, Martin Trötzmüller, Joanne Gerber, Clay F. Semenkovich, Harald Köfeler, Ueli Suter
Software Mentions: 1
Published: over 5 years ago

10.3389/fpsyt.2018.00597

Evaluation of the Association Between Genetic Variants in Circadian Rhythm Genes and Posttraumatic Stress Symptoms Identifies a Potential Functional Allele in the Transcription Factor TEF
Cited by: 8
Author(s): Sarah D. Linnstaedt, Yue Pan, Matthew C. Mauck, Jenyth Sullivan, Christine Zhou, Lindsey Jung, Cathleen A. Rueckeis, Jameson D Blount, Matthew S Carson, Andrew S. Tungate, Michael C. Kurz, Phyllis L. Hendry, Christopher Lewandowski, Teresa D׳Anza, Elizabeth M. Datner, Kathy Bell, Megan Lechner, Jeffrey W. Shupp, Bruce A. Cairns, Samuel A. McLean
Software Mentions: 1
Published: about 6 years ago

10.7554/eLife.39304

An ancient germ cell-specific RNA-binding protein protects the germline from cryptic splice site poisoning
Cited by: 20
Author(s): Ingrid Ehrmann, James H Crichton, Matthew R. Gazzara, Katherine James, Yilei Liu, Sushma Nagaraja Grellscheid, Tomaž Curk, Dirk G. de Rooij, Jannetta S. Steyn, Simon Cockell, Ian R. Adams, Yoseph Barash, David Elliott
Software Mentions: 1
Published: almost 6 years ago

10.3389/fpsyt.2019.00575

Psychometric Properties of Scale to Assess the Therapeutic Relationship—JapaneseVersion (STAR-J)
Cited by: 5
Author(s): Asami Matsunaga, Sosei Yamaguchi, Utako Sawada, Takuma Shiozawa, Chiyo Fujii
Software Mentions: 1
Published: about 5 years ago

10.3389/fpsyt.2019.00690

The Three Ps: Psychiatry, Pharmacy, and Pharmacogenomics, a Brief Report From New Zealand
Cited by: 11
Author(s): Simran Maggo, Kyra L.V. Sycamore, Allison L. Miller, Martin A. Kennedy
Software Mentions: 1
Published: about 5 years ago

10.3389/fpls.2020.01249

Combining a New Exome Capture Panel With an Effective varBScore Algorithm Accelerates BSA-Based Gene Cloning in Wheat
Cited by: 29
Author(s): Caixia Dong, Lichao Zhang, Zhongxu Chen, Chuan Xia, Yong–Qiang Gu, Jirui Wang, Danping Li, Zhencheng Xie, Qiang Zhang, Xueying Zhang, Lixuan Gui, Xu Liu, Xiuying Kong
Software Mentions: 1
Published: over 4 years ago

10.3389/fpls.2020.00289

Management, Analyses, and Distribution of the MaizeCODE Data on the Cloud
Cited by: 3
Author(s): Liya Wang, Zhenyuan Lu, Melissa delaBastide, Peter Van Buren, Xiaofei Wang, Cornel Ghiban, Michael Regulski, Jörg Drenkow, Xiaosa Xu, Carlos Ortiz‐Ramírez, Cristina F. Marco, Sara Goodwin, Alexander Dobin, Kenneth D. Birnbaum, David Jackson, Robert A. Martienssen, W. Richard McCombie, David Micklos, Michael C. Schatz, Doreen Ware, T Gingeras
Software Mentions: 1
Published: over 4 years ago

10.3389/fpls.2019.01116

Quantitative Proteomics Reveals a Role for SERINE/ARGININE-Rich 45 in Regulating RNA Metabolism and Modulating Transcriptional Suppression via the ASAP Complex in Arabidopsis thaliana
Cited by: 15
Author(s): Samuel Chen, Timothy J. Rooney, Anna Hu, Hunter S. Beard, Wesley M. Garrett, Leann M. Mangalath, Jordan J. Powers, Bret Cooper, Xiaoning Zhang
Software Mentions: 1
Published: about 5 years ago

10.3389/fpls.2018.00123

Morphological and Molecular Data Reveal Three Distinct Populations of Indian Wild Rice Oryza rufipogon Griff. Species Complex
Cited by: 24
Author(s): Balwant Singh, Nisha Singh, Sanjay Mishra, Kabita Tripathi, B. P. Singh, Vandna Rai, Ashok Kumar Singh, Nagendra Singh
Software Mentions: 1
Published: almost 7 years ago

10.3389/fpls.2017.01763

Genetic Loci Governing Grain Yield and Root Development under Variable Rice Cultivation Conditions
Cited by: 29
Author(s): Margaret Catolos, Nitika Sandhu, Shalabh Dixit, Noraziyah Abd Aziz Shamsudin, Ma. Elizabeth B. Naredo, Kenneth L. McNally, Amelia Henry, Ma. Genaleen Q. Diaz, Arvind Kumar
Software Mentions: 1
Published: about 7 years ago

10.3389/fpls.2017.00206

Genome-Wide Association and Transcriptome Analyses Reveal Candidate Genes Underlying Yield-determining Traits in Brassica napus
Cited by: 57
Author(s): Kun Lü, Peng Liu, Chao Zhang, Jianchang Lu, Bo Yang, Zhongchun Xiao, Ying Liang, Xiaozheng Xu, Cunmin Qu, Kai Zhang, Liezhao Liu, Qinlong Zhu, FU Ming-lian, Xianjun Yuan, Jiana Li
Software Mentions: 1
Published: almost 8 years ago

10.3389/fpls.2018.00095

Development of Molecular Markers Linked to Powdery Mildew Resistance Gene Pm4b by Combining SNP Discovery from Transcriptome Sequencing Data with Bulked Segregant Analysis (BSR-Seq) in Wheat
Cited by: 45
Author(s): Peipei Wu, Jingzhong Xie, Jinghuang Hu, Dan Qiu, Yong Li, Jingting Li, Miaomiao Li, Hongjun Zhang, Li Yang, Hongwei Liu, Yang Zhou, Zhongjun Zhang, Hongjie Li
Software Mentions: 1
Published: almost 7 years ago

10.1186/s13293-018-0167-9

Identification of novel candidate genes for 46,XY disorders of sex development (DSD) using a C57BL/6J-Y POS mouse model
Cited by: 12
Author(s): Hayk Barseghyan, Aleisha Symon, Mariam Zadikyan, Miguel Almalvez, Eva Eugenie Rose Segura, Ascia Eskin, Éric Vilain, Valerie A. Arboleda, Ruth Baxter, Stanley F. Nelson, Emmanuèle C. Délot, Vincent R. Harley
Software Mentions: 1
Published: almost 7 years ago

10.7554/eLife.49158

Neuronal TORC1 modulates longevity via AMPK and cell nonautonomous regulation of mitochondrial dynamics in C. elegans
Cited by: 65
Author(s): Yue Zhang, Anne Lanjuin, Suvagata Roy Chowdhury, Meeta Mistry, Carlos Giovanni Silva-García, Heather J. Weir, Chia-Lin Lee, Caroline C. Escoubas, Emina Tabakovic, William Mair
Software Mentions: 1
Published: over 5 years ago

10.1038/s41413-020-0094-3

uPAR antibody (huATN-658) and Zometa reduce breast cancer growth and skeletal lesions
Cited by: 21
Author(s): Niaz Mahmood, Ani Arakelian, Haseeb Ahmed Khan, Imrana Tanvir, Andrew P. Mazar, Shafaat A. Rabbani
Software Mentions: 1
Published: over 4 years ago

10.3389/fpls.2018.00115

A Genomic View of Alternative Splicing of Long Non-coding RNAs during Rice Seed Development Reveals Extensive Splicing and lncRNA Gene Families
Cited by: 25
Author(s): Edward Kiegle, Alex Garden, Elia Lacchini, Martin M. Kater
Software Mentions: 1
Published: almost 7 years ago

10.7554/eLife.54298

Targeting mir128-3p alleviates myocardial insulin resistance and prevents ischemia-induced heart failure
Cited by: 13
Author(s): Andrea Ruiz‐Velasco, Min Zi, Susanne Hille, Tayyiba Azam, Namrita Kaur, Juwei Jiang, Binh Nguyen, Karolina Sekeres, Pablo Binder, Lucy Collins, Fay Pu, Han Xiao, Kaomei Guan, Norbert Frey, Elizabeth J. Cartwright, Oliver Müller, Xin Wang, Wei Liu
Software Mentions: 1
Published: over 4 years ago

10.3389/fpls.2021.635990

Reproductive Proteins Evolve Faster Than Non-reproductive Proteins Among Solanum Species
Cited by: 11
Author(s): Leonie C. Moyle, Meng Wu, Matthew J. S. Gibson
Software Mentions: 1
Published: over 3 years ago

10.3389/fpls.2020.00612

Identification of α-Amyrin 28-Carboxylase and Glycosyltransferase From Ilex asprella and Production of Ursolic Acid 28-O-β-D-Glucopyranoside in Engineered Yeast
Cited by: 4
Author(s): Xiaoyu Ji, Shumin Lin, Yuanyuan Chen, Jiawei Liu, Xiaoyun Yun, Tiancheng Wang, Jialiang Qin, Chaoquan Luo, Kui Wang, Zhongxiang Zhao, Ruoting Zhan, Hui Xu
Software Mentions: 1
Published: over 4 years ago

10.1016/j.bone.2018.06.001

Genome-wide association study of extreme high bone mass: Contribution of common genetic variation to extreme BMD phenotypes and potential novel BMD-associated genes
Cited by: 36
Author(s): Celia L Gregson, Felicity Newell, Paul Leo, Graeme R. Clark, Lavinia Paternoster, Mhairi Marshall, Vincenzo Forgetta, John Morris, Bing Ge, Xiao Bao, J. H. Duncan Bassett, Graham R. Williams, Scott E. Youlten, Peter I. Croucher, George Davey Smith, David M. Evans, John P. Kemp, Matthew A. Brown, Jonathan H Tobias, Emma L. Duncan
Software Mentions: 1
Published: about 6 years ago

Projects: cran: STAR

Papers Mentioning STAR 5,759