10.1038/tp.2017.35

Citalopram amplifies the influence of living conditions on mood in depressed patients enrolled in the STAR*D study
Cited by: 44
Author(s): Flavia Chiarotti, Aurelia Viglione, Alessandro Giuliani, Igor Branchi
Software Mentions: 1
Published: over 9 years ago

10.1093/database/baz072

SpinachBase: a central portal for spinach genomics
Cited by: 24
Author(s): Keeley Collins, Kun Zhao, Chen Jiao, Chenxi Xu, Xiaofeng Cai, Xiaoli Wang, Chenhui Ge, Shaojun Dai, Quanxi Wang, Quanhua Wang, Zhangjun Fei, Yi Zheng
Software Mentions: 1
Published: over 7 years ago

10.1186/s13059-016-0873-8

Long non-coding RNAs display higher natural expression variation than protein-coding genes in healthy humans
Cited by: 120
Author(s): Aleksandra E. Kornienko, Christoph P. Dotter, Philipp M. Guenzl, Heinz Gisslinger, Bettina Gisslinger, Ciara Cleary, Róbert Královics, Florian M. Pauler, Denise P. Barlow
Software Mentions: 1
Published: over 10 years ago

10.3390/ijms20071689

A Transcriptomic Insight into the Impact of Colon Cancer Cells on Mast Cells
Cited by: 10
Author(s): Yingxin Yu, Bart R. Blokhuis, Johan Garssen, Frank A. Redegeld
Software Mentions: 1
Published: over 7 years ago

10.3389/fimmu.2021.728082

Brd4 Regulates the Homeostasis of CD8+ T-Lymphocytes and Their Proliferation in Response to Antigen Stimulation
Cited by: 3
Author(s): Zhilin Peng, Yiwen Zhang, Xiancai Ma, Mo Zhou, Shiyu Wu, Sifa Zheng, Yuhong Yuan, Yingshi Chen, Yuzhuang Li, Guanwen Wang, Feng Huang, Yidan Qiao, Baijing Xia, Weiwei Liu, Jun Li, Xu Zhang, Xin He, Ting Pan, Hanshi Xu, Hui Zhang
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.pone.0149229

Major Transcriptome Changes Accompany the Growth of Pseudomonas aeruginosa in Blood from Patients with Severe Thermal Injuries
Cited by: 30
Author(s): Cassandra Kruczek, Kameswara Rao Kottapalli, Sharmila Dissanaike, Nyaradzo Dzvova, John Griswold, Jane A. Colmer-Hamood, Abdul N. Hamood
Software Mentions: 1
Published: over 10 years ago

10.7554/eLife.23202

Tsc2 disruption in mesenchymal progenitors results in tumors with vascular anomalies overexpressing Lgals3
Cited by: 11
Author(s): Peter Klover, Rajesh L. Thangapazham, Jirō Katō, Wang Jian, Stasia A. Anderson, Victoria Hoffmann, Wendy K. Steagall, Shaowei Li, Elizabeth A McCart, Neera Nathan, Joshua D. Bernstock, Matthew D. Wilkerson, Clifton L. Dalgard, Joel Moss, Thomas N. Darling
Software Mentions: 1
Published: almost 9 years ago

10.7554/eLife.65104

Nucleo-cytoplasmic shuttling of splicing factor SRSF1 is required for development and cilia function
Cited by: 24
Author(s): Fiona Haward, Magdalena M. Maslon, Patricia L Yeyati, Nicolás Bellora, Jan N. Hansen, Stuart Aitken, Jennifer Lawson, Alex von Kriegsheim, Dagmar Wachten, Pleasantine Mill, Ian R. Adams, Javier F. Cáceres
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.ppat.1007850

The protective effect of inflammatory monocytes during systemic C. albicans infection is dependent on collaboration between C-type lectin-like receptors
Cited by: 33
Author(s): Aiysha Thompson, Luke C. Davies, Chia‐Te Liao, Diogo M da Fonseca, J. S. Griffiths, Robert Andrews, Aled Jones, Mathew Clement, Gordon D. Brown, Ian R. Humphreys, Philip Russel Taylor, Selinda J. Orr
Software Mentions: 1
Published: about 7 years ago

10.3389/fimmu.2018.02303

Silencing the CSF-1 Axis Using Nanoparticle Encapsulated siRNA Mitigates Viral and Autoimmune Myocarditis
Cited by: 25
Author(s): Ingmar Soeren Meyer, Carl Christoph Goetzke, Meike Kespohl, Martina Sauter, Arnd Heuser, Volker Eckstein, Hans‐Peter Vornlocher, Daniel G. Anderson, Jan Haas, Benjamin Meder, Hugo A. Katus, Karin Klingel, Antje Beling, Florian Leuschner
Software Mentions: 1
Published: over 7 years ago

10.1186/s13059-016-0917-0

The real cost of sequencing: scaling computation to keep pace with data generation
Cited by: 259
Author(s): Paul Muir, Shantao Li, Shaoke Lou, Daifeng Wang, Daniel Spakowicz, Jing Zhang, George M. Weinstock, Farren J. Isaacs, Joel Rozowsky, Mark Gerstein
Software Mentions: 1
Published: over 10 years ago

10.3389/fimmu.2020.01204

Ischemia Reperfusion Injury Triggers CXCL13 Release and B-Cell Recruitment After Allogenic Kidney Transplantation
Cited by: 17
Author(s): Kirill Kreimann, Mi-Sun Jang, Song Rong, Robert Greite, Sibylle von Vietinghoff, Roland Schmitt, Jan Hinrich Bräsen, Lena Schiffer, Jessica Gerstenberg, Vijith Vijayan, Oliver Dittrich–Breiholz, Li Wang, Christian M. Karsten, Wilfried Gwinner, Hermann Haller, Stephan Immenschuh, Faikah Gueler
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41398-019-0677-1

A computationally inspired in-vivo approach identifies a link between amygdalar transcriptional heterogeneity, socialization and anxiety
Cited by: 4
Author(s): Aaron Goldman, Joshua L. Smalley, Meeta Mistry, Harald Krenzlin, Hong Zhang, Andrew Dhawan, Barbara J. Caldarone, Stephen J. Moss, David Silbersweig, Sean E. Lawler, Ilana M. Braun
Software Mentions: 1
Published: over 6 years ago

10.1016/j.dib.2020.105729

Illumina and PacBio DNA sequencing data, de novo assembly and annotation of the genome of Aurantiochytrium limacinum strain CCAP_4062/1
Cited by: 14
Author(s): Christian Morabito, Riccardo Aiese Cigliano, Éric Maréchal, Fabrice Rébeillé, Alberto Amato
Software Mentions: 1
Published: almost 6 years ago

10.7554/eLife.26464

Loss of adult skeletal muscle stem cells drives age-related neuromuscular junction degeneration
Cited by: 96
Author(s): Wenxuan Liu, Alanna Klose, Sophie Forman, Nicole D. Paris, Lan Wei-LaPierre, Mariela Cortés-López, Aidi Tan, Morgan Flaherty, Pedro Miura, Robert T. Dirksen, Joe V. Chakkalakal
Software Mentions: 1
Published: about 9 years ago

10.1038/s41398-020-0832-8

Cannabinoid receptor CNR1 expression and DNA methylation in human prefrontal cortex, hippocampus and caudate in brain development and schizophrenia
Cited by: 33
Author(s): Ran Tao, Chao Li, Andrew E. Jaffe, Joo Heon Shin, Amy Deep-Soboslay, Rae’e Yamin, Daniel R. Weinberger, Thomas M. Hyde, Joel E. Kleinman
Software Mentions: 1
Published: about 6 years ago

10.3389/fimmu.2017.00682

Distinct Transcriptional and Alternative Splicing Signatures of Decidual CD4+ T Cells in Early Human Pregnancy
Cited by: 27
Author(s): Weihong Zeng, Zhicui Liu, Xinmei Liu, Siming Zhang, Asma Khanniche, Ying Zheng, Xiaoling Ma, Tiantian Yu, Fu‐Ju Tian, Xiao-Rui Liu, Jianxia Fan, Yi Lin
Software Mentions: 1
Published: about 9 years ago

10.1016/j.dib.2019.105004

Analytical dataset of short-term heat stress induced reshuffling of metabolism and transcriptomes in maize grown under elevated CO2
Cited by: 2
Author(s): Jemâa Essemine, Jikai Li, Genyun Chen, Mingnan Qu
Software Mentions: 1
Published: over 6 years ago

10.3389/fimmu.2018.00964

Aire Disruption Influences the Medullary Thymic Epithelial Cell Transcriptome and Interaction With Thymocytes
Cited by: 19
Author(s): César A. Speck-Hernández, Amanda Freire Assis, Rafaela F. Felicio, Larissa Cotrim-Sousa, Nicole Pezzi, Gabriel Sarti Lopes, Karina Fittipaldi Bombonato-Prado, Silvana Giuliatti, Geraldo Aleixo Silva Passos
Software Mentions: 1
Published: about 8 years ago

10.3389/fgene.2019.01405

Genetic Variation Related to High Elevation Adaptation Revealed by Common Garden Experiments in Pinus yunnanensis
Cited by: 13
Author(s): Yuze Sun, Wei Zhao, Chaoqun Xu, Yong Xu, Yousry A. El‐Kassaby, Amanda R. De La Torre, Jian‐Feng Mao
Software Mentions: 1
Published: over 6 years ago

10.3389/fimmu.2019.01949

Functional Annotation of Genetic Loci Associated With Sepsis Prioritizes Immune and Endothelial Cell Pathways
Cited by: 13
Author(s): Kieu Le, Vasiliki Matzaraki, Mihai G. Netea, Cisca Wijmenga, Jill Moser, Vinod Kumar
Software Mentions: 1
Published: almost 7 years ago

10.3389/fimmu.2019.02081

Fasciola hepatica Infection in Cattle: Analyzing Responses of Peripheral Blood Mononuclear Cells (PBMC) Using a Transcriptomics Approach
Cited by: 24
Author(s): Garcia-Campos Andres, Carolina N. Correia, Amalia Naranjo‐Lucena, Laura Garza‐Cuartero, Gabriella Farries, John A. Browne, David E. MacHugh, Grace Mulcahy
Software Mentions: 1
Published: almost 7 years ago

10.3389/fimmu.2021.669889

Immunologic Profiling of the Atlantic Salmon Gill by Single Nuclei Transcriptomics
Cited by: 13
Author(s): Alexander C. West, Yasutaka Mizoro, Shona H. Wood, Louise Ince, Marianne Iversen, Even H. Jørgensen, Torfinn Nome, Simen Rød Sandve, Samuel Martín, A. S. I. Loudon, David G. Hazlerigg
Software Mentions: 1
Published: about 5 years ago

10.1186/s13059-018-1496-z

Single-cell RNAseq for the study of isoforms—how is that possible?
Cited by: 93
Author(s): Ángeles Arzalluz-Luque, Ana Conesa
Software Mentions: 1
Published: almost 8 years ago

10.3389/fimmu.2021.672123

Gene Expression Profiling of Lymph Node Sub-Capsular Sinus Macrophages in Cancer
Cited by: 1
Author(s): Pellin Danilo, Natalie Claudio, Zihan Guo, Tahereh Ziglari, Ferdinando Pucci
Software Mentions: 1
Published: about 5 years ago

10.1016/j.dib.2018.03.045

Datasets describing the growth and molecular features of hepatocellular carcinoma patient-derived xenograft cells grown in a three-dimensional macroporous hydrogel
Cited by: 3
Author(s): Eliza Li Shan Fong, Tan Boon Toh, Quy Xiao Xuan Lin, Lianwen Zheng, Lissa Hooi, Masturah Bte Mohd Abdul Rashid, Touati Benoukraf, Edward Kai‐Hua Chow, The Hung Huynh, Hanry Yu
Software Mentions: 1
Published: about 8 years ago

10.3389/fimmu.2020.628923

Human IgA-Expressing Bone Marrow Plasma Cells Characteristically Upregulate Programmed Cell Death Protein-1 Upon B Cell Receptor Stimulation
Cited by: 6
Author(s): Annika Wiedemann, Marie Lettau, Ina Wirries, Annemarie Jungmann, Abdulrahman Salhab, Gilles Gasparoni, Henrik E. Mei, Carsten Perka, Jörn Walter, Andreas Radbruch, Andreia C. Lino, Thomas Dörner
Software Mentions: 1
Published: over 5 years ago

10.1186/s13059-016-0956-6

A transcriptome-based global map of signaling pathways in the ovarian cancer microenvironment associated with clinical outcome
Cited by: 81
Author(s): Silke Reinartz, Florian Finkernagel, Till Adhikary, Verena Rohnalter, Tim Schumann, Yvonne Schober, Wolfgang Andreas Nockher, Andrea Nist, Thorsten Stiewe, Julia M. Jansen, Uwe Wagner, Sabine Müller‐Brüsselbach, Rolf Müller
Software Mentions: 1
Published: about 10 years ago

10.3389/fimmu.2020.483296

ProTECT—Prediction of T-Cell Epitopes for Cancer Therapy
Cited by: 12
Author(s): Rao Av, Ada A. Madejska, Jacob Pfeil, Benedict Paten, Sofie R. Salama, David Haussler
Software Mentions: 1
Published: over 5 years ago

10.1016/j.dib.2018.07.006

Properties data of phenolic resins synthetized for the impregnation of saturating Kraft paper
Cited by: 5
Author(s): Marion Thébault, Andreas Kandelbauer, Iris Eicher, Björn Geyer, Edith Zikulnig-Rusch
Software Mentions: 1
Published: almost 8 years ago

10.1186/1745-6215-13-19

Assertive Community Treatment for alcohol dependence (ACTAD): study protocol for a randomised controlled trial
Cited by: 11
Author(s): Helen Gilburt, Tom Burns, Alex Copello, Simon Coulton, Mike Crawford, Ed Day, Paolo Deluca, Christine Godfrey, Steve Parrott, Abigail K. Rose, Julia Sinclair, Christine Wright, Colin Drummond
Software Mentions: 1
Published: over 14 years ago

10.3390/molecules24183217

Moringin Pretreatment Inhibits the Expression of Genes Involved in Mitophagy in the Stem Cell of the Human Periodontal Ligament
Cited by: 16
Author(s): Luigi Chiricosta, Agnese Gugliandolo, Francesca Diomede, Jacopo Pizzicannella, Oriana Trubiani, Renato Iori, Giuseppe Tardiolo, Simone Guarnieri, Placido Bramantı, Emanuela Mazzon
Software Mentions: 1
Published: almost 7 years ago

10.1186/1745-6215-15-101

The effectiveness and cost-effectiveness of lay counsellor-delivered psychological treatments for harmful and dependent drinking and moderate to severe depression in primary care in India: PREMIUM study protocol for randomized controlled trials
Cited by: 55
Author(s): Vikram Patel, Benedict Weobong, Abhijit Nadkarni, Helen A. Weiss, Arpita Anand, Smita Naik, Bhargav Bhat, Jesina Pereira, Ricardo Araya, Sona Dimidjian, Steven D. Hollon, Michael King, Jim McCambridge, David McDaid, Pratima Murthy, Richard Velleman, Christopher G. Fairburn, Betty Kirkwood
Software Mentions: 1
Published: over 12 years ago

10.1016/j.dib.2021.107130

Human Chr18 transcriptome dataset combined from the Illumina HiSeq, ONT MinION, and qPCR data
Cited by: 2
Author(s): George S. Krasnov, Timur Shkrigunov, Sergey P. Radko, K. G. Ptitsyn, Valeriya V. Shapovalova, О.С. Тимошенко, Svetlana A. Khmeleva, Л. К. Курбатов, Y. Y. Kiseleva, Ekaterina V. Ilgisonis, Olga I. Kiseleva, И. В. Вахрушев, А. В. Цветкова, I.V. Buromski, С. С. Маркин, Alexander I. Archakov, Andrey Lisitsa, Elena Ponomarenko
Software Mentions: 1
Published: about 5 years ago

10.1016/j.dib.2019.104056

Data on production and characterization of melamine-furan-formaldehyde particles and reversible reactions thereof
Cited by: 1
Author(s): Katharina Urdl, Stephanie Weiss, Günter Hesser, Andreas Kandelbauer, Edith Zikulnig-Rusch, Uwe Müller, Wolfgang Kern
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.ppat.1009582

Characterization of ALTO-encoding circular RNAs expressed by Merkel cell polyomavirus and trichodysplasia spinulosa polyomavirus
Cited by: 14
Author(s): Rong Yang, Eunice E. Lee, Jiwoong Kim, Joon Hwan Choi, Elysha Kolitz, Yating Chen, Clair Crewe, Nicholas J. H. Salisbury, Philipp E. Scherer, Clay J. Cockerell, Taylor R. Smith, Rosemary Son, Louisa Verlinden, Denise A. Galloway, Christopher B. Buck, Mariet C.W. Feltkamp, Christopher S. Sullivan, Richard C. Wang
Software Mentions: 1
Published: about 5 years ago

10.1186/s13063-015-0768-0

The NAtional randomised controlled Trial of Tonsillectomy IN Adults (NATTINA): a clinical and cost-effectiveness study: study protocol for a randomised control trial
Cited by: 14
Author(s): Isabel Rubie, Catherine Haighton, James O’Hara, Nikki Rousseau, Nick Steen, Deborah Stocken, Frank Sullivan, Luke Vale, Scott Wilkes, Janet A. Wilson
Software Mentions: 1
Published: about 11 years ago

10.1016/j.dib.2015.12.026

Data describing the effects of dietary bioactive agents on colonic stem cell microRNA and mRNA expression
Cited by: 4
Author(s): Manasvi S. Shah, Eun-Joo Kim, Laurie A. Davidson, Jason Knight, Roger S. Zoh, Jennifer S. Goldsby, Evelyn S. Callaway, Beyian Zhou, Ivan Ivanov, Robert S. Chapkin
Software Mentions: 1
Published: over 10 years ago

10.1186/s13063-015-1063-9

The effectiveness and cost-effectiveness of the peer-delivered Thinking Healthy Programme for perinatal depression in Pakistan and India: the SHARE study protocol for randomised controlled trials
Cited by: 62
Author(s): Siham Sikander, Anisha Lazarus, Omer Bangash, Daniela C. Fuhr, Benedict Weobong, Revathi N. Krishna, Irshad Ahmad, Helen A. Weiss, LeShawndra N. Price, Atıf Rahman, Vikram Patel
Software Mentions: 1
Published: over 10 years ago

10.3390/genes12081107

Gene Expression Analysis Provides New Insights into the Mechanism of Intramuscular Fat Formation in Japanese Black Cattle
Cited by: 13
Author(s): Shuji Ueda, Mana Hosoda, Ken‐ichi Yoshino, Minoru Yamanoue, Yasuhito Shirai
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-019-49894-4

A mass spectrometry-based assay using metabolic labeling to rapidly monitor chromatin accessibility of modified histone proteins
Cited by: 31
Author(s): Simone Sidoli, Mariana Lopes, Peder J. Lund, Naomi Goldman, Maria Fasolino, Mariel Coradin, Katarzyna Kulej, Natarajan V. Bhanu, Golnaz Vahedi, Benjamin A. Garcia
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-019-50088-1

Upregulation of the chromatin remodeler HELLS is mediated by YAP1 in Sonic Hedgehog Medulloblastoma
Cited by: 18
Author(s): M. Hope Robinson, Victor Maximov, Shoeb Lallani, Hamza Farooq, Michael D. Taylor, Renee Read, Anna Marie Kenney
Software Mentions: 1
Published: almost 7 years ago

10.1186/s13063-017-2391-8

Development of a complex intervention for people with chronic pain after knee replacement: the STAR care pathway
Cited by: 12
Author(s): Vikki Wylde, Nick Howells, Wendy Bertram, Andrew Moore, Julie Bruce, Candy McCabe, Ashley W Blom, Jane A Dennis, Amanda Burston, Rachael Gooberman‐Hill
Software Mentions: 1
Published: over 8 years ago

10.7554/eLife.45920

Exercise-induced enhancement of synaptic function triggered by the inverse BAR protein, Mtss1L
Cited by: 25
Author(s): Christina Chatzi, Yingyu Zhang, William D. Hendricks, Yang Chen, Eric Schnell, Richard H. Goodman, Gary L. Westbrook
Software Mentions: 1
Published: about 7 years ago

10.1007/s11886-017-0886-2

Ablative Radiotherapy as a Noninvasive Alternative to Catheter Ablation for Cardiac Arrhythmias
Cited by: 38
Author(s): Paul C. Zei, Scott G. Soltys
Software Mentions: 1
Published: almost 9 years ago

10.1186/s13063-019-3296-5

Optimising recruitment into trials using an internal pilot
Cited by: 7
Author(s): Wendy Bertram, Andrew Moore, Vikki Wylde, Rachael Gooberman-Hill
Software Mentions: 1
Published: about 7 years ago

10.3389/fimmu.2017.01938

B Cell-Intrinsic Role for IRF5 in TLR9/BCR-Induced Human B Cell Activation, Proliferation, and Plasmablast Differentiation
Cited by: 40
Author(s): Saurav De, Baohong Zhang, Tiffany Shih, Sukhwinder Singh, Aaron Winkler, Robert Donnelly, Betsy J. Barnes
Software Mentions: 1
Published: over 8 years ago

10.1186/s13063-019-3573-3

The effectiveness of a low-intensity problem-solving intervention for common adolescent mental health problems in New Delhi, India: protocol for a school-based, individually randomized controlled trial with an embedded stepped-wedge, cluster randomized controlled recruitment trial
Cited by: 13
Author(s): Rachana Parikh, Daniel Michelson, Kanika Malik, Sachin Shinde, Helen A. Weiss, Adriaan W. Hoogendoorn, Jeroen Ruwaard, Madhuri Krishna, Rhea Sharma, Bhargav Bhat, Rooplata Sahu, Sonal Mathur, Paulomi M. Sudhir, Michael King, Pim Cuijpers, Bruce F. Chorpita, Christopher G. Fairburn, Vikram Patel
Software Mentions: 1
Published: almost 7 years ago

10.1186/s13063-019-3792-7

Structured, proactive care coordination versus usual care for Improving Morbidity during Post-Acute Care Transitions for Sepsis (IMPACTS): a pragmatic, randomized controlled trial
Cited by: 18
Author(s): Marc Kowalkowski, Shih-Hsiung Chou, Andrew McWilliams, Cathryn Lashley, Stephanie Murphy, Whitney Rossman, Alfred Papali, Alan C. Heffner, Mark J. Russo, Larry Burke, Michael Gibbs, Stephanie Parks Taylor
Software Mentions: 1
Published: over 6 years ago

10.1186/s13063-020-04255-9

Cost-utility analysis of curative and maintenance repetitive transcranial magnetic stimulation (rTMS) for treatment-resistant unipolar depression: a randomized controlled trial protocol
Cited by: 4
Author(s): Samuel Bulteau, Alexandre Laurin, Christelle Volteau, Cécile Dert, Lydie Lagalice, Solène Schirr-Bonnans, Nicolas Bukowski, Marie Guitteny, Luc Simons, Clémence Cabelguen, Anne Pichot, Fabienne Tessier, Annabelle Bonnin, Adeline Lepage, Jean-Marie Vanelle, Anne Sauvaget, Valéry-Pierre Riche
Software Mentions: 1
Published: over 6 years ago

10.3390/cancers12030620

RNA Immune Signatures from Pan-Cancer Analysis Are Prognostic for High-Grade Serous Ovarian Cancer and Other Female Cancers
Cited by: 12
Author(s): Wendell Jones, Chad M. Michener, Charles V. Biscotti, Elena Ioana Braicu, Jalid Sehouli, Mahrukh K. Ganapathi, Ram Ganapathi
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-019-51094-z

Experimental challenge with bovine respiratory syncytial virus in dairy calves: bronchial lymph node transcriptome response
Cited by: 22
Author(s): Dayle Johnston, Bernadette Earley, Matthew S. McCabe, Ken Lemon, Catherine Duffy, Michael McMenamy, S. L. Cosby, JaeWoo Kim, Gordon Blackshields, Taylor Jf, Sinéad M. Waters
Software Mentions: 1
Published: over 6 years ago

10.1186/s13059-016-0984-2

Comprehensive analysis of promoter-proximal RNA polymerase II pausing across mammalian cell types
Cited by: 66
Author(s): Daniel S. Day, Bing Zhang, Sean Stevens, Francesco Ferrari, Erica Larschan, Peter J. Park, William T. Pu
Software Mentions: 1
Published: about 10 years ago

10.3389/fimmu.2019.03118

Qualitative Changes in Cortical Thymic Epithelial Cells Drive Postpartum Thymic Regeneration
Cited by: 4
Author(s): Maude Dumont-Lagacé, Tariq Daouda, Lucyle Depoërs, Jérémie Zumer, Yahya Benslimane, Sylvie Brochu, Lea Harrington, Sébastien Lemieux, Claude Perreault
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-019-51522-0

A clinicohaematological prognostic model for nasal-type natural killer/T-cell lymphoma: A multicenter study
Cited by: 13
Author(s): Kang Hai Tan, Burton K. Chia, Jing Quan Lim, Lay Poh Khoo, Chee Leong Cheng, Louis Tan, Eileen Poon, Nagavalli Somasundaram, Mohamad Farid, Tiffany Tang, Miriam Tao, Daryl Ming Zhe Cheah, Yurike Laurensia, Jane Wan Lu Pang, Tongxing Song, Jian Tan, Dachuan Huang, Seok Jin Kim, Won Seog Kim, Choon Kiat Ong, Soon Thye Lim, Jason Yongsheng Chan
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-019-52049-0

Characterisation of proguanylin expressing cells in the intestine – evidence for constitutive luminal secretion
Cited by: 8
Author(s): Florent Serge Dye, Pierre Larraufie, Richard G. Kay, Tamana Darwish, Juraj Rievaj, Deborah A. Goldspink, Claire L Meek, Stephen Middleton, Richard Hardwick, Geoffrey Roberts, Jennifer Percival-Alwyn, T. Owens Vaughan, Franco Ferraro, Benjamin Challis, Stephen O’Rahilly, Maria Groves, Fiona M. Gribble, Frank Reimann
Software Mentions: 1
Published: over 6 years ago

10.3389/fgene.2020.570731

Genetic Architecture and Anthocyanin Profiling of Aromatic Rice From Manipur Reveals Divergence of Chakhao Landraces
Cited by: 18
Author(s): S. Bhuvaneswari, S. Gopala Krishnan, Haritha Bollinedi, Supradip Saha, Ranjith Kumar Ellur, K. K. Vinod, Indu Shekhar Singh, N. Prakash, Prolay Kumar Bhowmick, M. Nagarajan, Nagendra Singh, Ashok Kumar Singh
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0157758

Characterisation of CDKL5 Transcript Isoforms in Human and Mouse
Cited by: 47
Author(s): Ralph D. Hector, Owen Dando, Nicoletta Landsberger, Charlotte Kilstrup‐Nielsen, Peter C. Kind, Mark E.S. Bailey, Stuart Cobb
Software Mentions: 1
Published: about 10 years ago

10.1101/2021.02.17.431704

Host-virus chimeric events in SARS-CoV2 infected cells are infrequent and artifactual
Cited by: 3
Author(s): Bingyu Yan, Srishti Chakravorty, Carmen Mirabelli, Luopin Wang, Jorge L Trujillo-Ochoa, Daniel Chauss, Dhaneshwar Kumar, Michail S Lionakis, Matthew R. Olson, Christiane E. Wobus, Behdad Afzali, Majid Kazemian
Software Mentions: 1
Published: over 5 years ago

10.3390/molecules26092677

Cocrystal of Apixaban–Quercetin: Improving Solubility and Bioavailability of Drug Combination of Two Poorly Soluble Drugs
Cited by: 21
Author(s): Li Zhang, Dewen Kong, Hongjuan Wang, Lingtai Jiao, Xiaoyue Zhao, Junke Song, Dezhi Yang, Haiguang Yang, Shumei Yang, Guanhua Du, Yang Lű
Software Mentions: 1
Published: about 5 years ago

10.3390/molecules25122928

Antifungal Agent 4-AN Changes the Genome-Wide Expression Profile, Downregulates Virulence-Associated Genes and Induces Necrosis in Candida albicans Cells
Cited by: 3
Author(s): Aleksandra Martyna, Maciej Masłyk, Monika Janeczko, Elżbieta Kochanowicz, Bartłomiej Gielniewski, Aleksandra Świercz, Oleg M. Demchuk, Konrad Kubiński
Software Mentions: 1
Published: about 6 years ago

10.3389/fgene.2020.00552

Identification of miRNA–mRNA–TFs Regulatory Network and Crucial Pathways Involved in Tetralogy of Fallot
Cited by: 15
Author(s): Guoling You, Bailing Zu, Bo Wang, Qin Fu, Fen Li
Software Mentions: 1
Published: about 6 years ago

10.1186/s13059-018-1389-1

An obesity-associated gut microbiome reprograms the intestinal epigenome and leads to altered colonic gene expression
Cited by: 98
Author(s): Yufeng Qin, John D. Roberts, Sara A. Grimm, Fred B. Lih, Leesa J. Deterding, Ruifang Li, Kaliopi Chrysovergis, Paul A. Wade
Software Mentions: 1
Published: over 8 years ago

10.1128/mBio.00778-17

Endoplasmic Reticulum Stress Caused by Lipoprotein Accumulation Suppresses Immunity against Bacterial Pathogens and Contributes to Immunosenescence
Cited by: 31
Author(s): Jogender Singh, Alejandro Aballay
Software Mentions: 1
Published: about 9 years ago

10.1186/s13059-016-1079-9

Extensive RNA editing and splicing increase immune self-representation diversity in medullary thymic epithelial cells
Cited by: 52
Author(s): Miri Danan-Gotthold, C. Guyon, Matthieu Giraud, Erez Y. Levanon, Jakub Abramson
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0239275

The R2R3-MYB gene family in banana (Musa acuminata): Genome-wide identification, classification and expression patterns
Cited by: 33
Author(s): Boas Pucker, Ashutosh Pandey, Bernd Weißhaar, Ralf Stracke
Software Mentions: 1
Published: almost 6 years ago

10.1186/s13041-021-00794-7

Atg7 deficiency in microglia drives an altered transcriptomic profile associated with an impaired neuroinflammatory response
Cited by: 6
Author(s): Lara Frieß, Mathilde Cheray, Lily Keane, Kathleen Grabert, Bertrand Joseph
Software Mentions: 1
Published: about 5 years ago

10.3389/fgene.2019.00218

Whole-Genome Resequencing Identifies KIT New Alleles That Affect Coat Color Phenotypes in Pigs
Cited by: 16
Author(s): Zhongping Wu, Danying Zheng, Min Huang, Yong Hou, Hui Zhang, Hao Chen, Jun Ren
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-019-53915-7

An epigenetic screening determines BET proteins as targets to suppress self-renewal and tumorigenicity in canine mammary cancer cells
Cited by: 10
Author(s): Pedro Luiz Porfírio Xavier, Yonara de Gouveia Cordeiro, Pâmela Almeida Alexandre, Pedro Ratto Lisboa Pires, Bruno H. Saranholi, Edson R. Silva, Susanne Müller, Heidge Fukumasu
Software Mentions: 1
Published: over 6 years ago

10.1128/mBio.02765-18

<i>Mucor circinelloides</i> Thrives inside the Phagosome through an Atf-Mediated Germination Pathway
Cited by: 26
Author(s): Carlos Pérez-Arques, María Isabel Navarro-Mendoza, Laura Murcia, Carlos Lax, Pablo Martínez-García, Joseph Heitman, Francisco E. Nicolás
Software Mentions: 1
Published: over 7 years ago

10.1128/mBio.00437-19

Mutations in <i>hmg1</i> , Challenging the Paradigm of Clinical Triazole Resistance in Aspergillus fumigatus
Cited by: 76
Author(s): Jeffrey M. Rybak, Wenbo Ge, Nathan P. Wiederhold, Josie E. Parker, Steven L. Kelly, P. David Rogers, Jarrod R. Fortwendel
Software Mentions: 1
Published: about 7 years ago

10.3390/cancers13092250

IGF2 Mediates Resistance to Isoform-Selective-Inhibitors of the PI3K in HPV Positive Head and Neck Cancer
Cited by: 6
Author(s): Mai Badarni, Manu Prasad, Artemiy Golden, Baisali Bhattacharya, Liron Levin, Ksenia M. Yegodayev, Orr Dimitstein, Ben‐Zion Joshua, Limor Cohen, Ekaterina Khrameeva, Dexin Kong, Angel Porgador, Alex Braiman, Jennifer R. Grandis, Barak Rotblat, Moshe Elkabets
Software Mentions: 1
Published: about 5 years ago

10.1128/mBio.01362-19

Pseudomonas aeruginosa Regulatory Protein AnvM Controls Pathogenicity in Anaerobic Environments and Impacts Host Defense
Cited by: 13
Author(s): Yingchao Zhang, Chunkui Zhou, Qinqin Pu, Qun Wu, Shirui Tan, Xiaolong Shao, Weitong Zhang, Yingpeng Xie, Rongpeng Li, Xue‐Jie Yu, Rui Wang, Liang Zhang, Min Wu, Xin Deng
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-019-54651-8

Trim33 (Tif1γ) is not required for skeletal muscle development or regeneration but suppresses cholecystokinin expression
Cited by: 3
Author(s): Cassie Parks, Katherine Pak, Iago Pinal‐Fernandez, Wilson Huang, Assia Derfoul, Andrew L. Mammen
Software Mentions: 1
Published: over 6 years ago

10.3390/cancers12071719

Dysregulation of MITF Leads to Transformation in MC1R-Defective Melanocytes
Cited by: 5
Author(s): Timothy J. Lavelle, Tine Norman Alver, Karen‐Marie Heintz, Patrik Wernhoff, Vegard Nygaard, Sigve Nakken, Geir Frode Øy, Sigurd Leinæs Bøe, Alfonso Urbanucci, Eivind Hovig
Software Mentions: 1
Published: about 6 years ago

10.1002/1878-0261.12914

Epigenetic regulator BMI1 promotes alveolar rhabdomyosarcoma proliferation and constitutes a novel therapeutic target
Cited by: 10
Author(s): Cara E. Shields, Sindhu Potlapalli, Selma M. Cuya-Smith, Sarah K. Chappell, Dongdong Chen, Daniel Martı́nez, Jennifer Pogoriler, Komal S. Rathi, Shiv Patel, Kristianne M. Oristian, Corinne M. Linardic, John M. Maris, Karmella A. Haynes, Robert W. Schnepp
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0148164

Expression of mRNA Encoding Mcu and Other Mitochondrial Calcium Regulatory Genes Depends on Cell Type, Neuronal Subtype, and Ca2+ Signaling
Cited by: 25
Author(s): Nóra M. Márkus, Philip Hasel, Jing Qiu, Karen Bell, Samuel Heron, Peter C. Kind, Owen Dando, T. Ian Simpson, Giles E. Hardingham
Software Mentions: 1
Published: over 10 years ago

10.1038/s41598-019-55291-8

Synergistic Effects of Hyperandrogenemia and Obesogenic Western-style Diet on Transcription and DNA Methylation in Visceral Adipose Tissue of Nonhuman Primates
Cited by: 12
Author(s): Lucia Carbone, Brett A. Davis, Suzanne S. Fei, Ashley E. White, Kimberly A. Nevonen, Diana Takahashi, Amanda Vinson, Cadence True, Charles T. Roberts, Oleg Varlamov
Software Mentions: 1
Published: over 6 years ago

10.15252/emmm.202012063

Trans‐generational epigenetic regulation associated with the amelioration of Duchenne Muscular Dystrophy
Cited by: 8
Author(s): Julie Martone, Michela Lisi, Francesco Castagnetti, Alessandro Rosa, V. Di Carlo, Enrique Blanco, Adriano Setti, Davide Mariani, Alessio Colantoni, Tiziana Santini, Lucia Perone, Luciano Di Croce, Irene Bozzoni
Software Mentions: 1
Published: about 6 years ago

10.1016/j.omtn.2019.09.001

Mitochondrial DNA Haplogroup N9a Negatively Correlates with Incidence of Hepatocellular Carcinoma in Northern China
Cited by: 5
Author(s): Shixuan Hua, Meinan Li, Qiongya Zhao, Junyi Wang, Yaping Zhou, Jiangtao Liu, Hezhi Fang, Minghua Jiang, Lijun Shen
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0211244

Myc-induced nuclear antigen constrains a latent intestinal epithelial cell-intrinsic anthelmintic pathway
Cited by: 5
Author(s): M.R.A. Pillai, Belgacem Mihi, Kenji Ishiwata, Kiminori Nakamura, Naoya Sakuragi, David Finkelstein, Maureen A. McGargill, Toshinori Nakayama, Tokiyoshi Ayabe, Mathew L. Coleman, Mark Bix
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-019-56240-1

No metagenomic evidence of tumorigenic viruses in cancers from a selected cohort of immunosuppressed subjects
Cited by: 2
Author(s): Nunzia Passaro, Andrea Casagrande, Matteo Chiara, Bruno Fosso, Caterina Manzari, Anna Maria D’Erchia, Samuele Iesari, Francesco Pisani, Antonio Famulari, P. Tulissi, Stefania Mastrosimone, Maria Cristina Maresca, Giuseppe Mercante, Giuseppe Spriano, Giacomo Corrado, Enrico Vizza, Anna Rosa Garbuglia, Maria Rosaria Capobianchi, Carla Mottini, Alessandra Cenci, Marco Tartaglia, Alessandro Nanni Costa, Graziano Pesole, Marco Crescenzi
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-019-56401-2

A novel Arabidopsis pathosystem reveals cooperation of multiple hormonal response-pathways in host resistance against the global crop destroyer Macrophomina phaseolina
Cited by: 13
Author(s): Mercedes Schroeder, Yan Liu, Miwa Shirai, Natalie Alsalek, Tokuji Tsuchiya, Philip A. Roberts, Thomas Eulgem
Software Mentions: 1
Published: over 6 years ago

10.1016/j.omtn.2018.06.004

Impact of miRNA-mRNA Profiling and Their Correlation on Medulloblastoma Tumorigenesis
Cited by: 32
Author(s): Vinod Kumar, Virender Kumar, Amit Chaudhary, Donald W. Coulter, Timothy R. McGuire, Ram I. Mahato
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41598-019-56645-y

A genetic characterization of Korean waxy maize (Zea mays L.) landraces having flowering time variation by RNA sequencing
Cited by: 0
Author(s): Gibum Yi, Hosub Shin, Seung Hwa Yu, Jeong Eun Park, Taegu Kang, Jin Hoe Huh
Software Mentions: 1
Published: over 6 years ago

10.1590/1678-4685-GMB-2019-0215

The combined analysis as the best strategy for Dual RNA-Seq mapping
Cited by: 5
Author(s): Eliandro Espindula, Edilena Reis Sperb, Evelise Bach, Luciane Maria Pereira Passaglia
Software Mentions: 1
Published: over 7 years ago

10.3389/fgene.2021.627623

Whole-Blood Transcriptome Analysis of Feedlot Cattle With and Without Bovine Respiratory Disease
Cited by: 13
Author(s): Janelle A. Jiminez, Edouard Timsit, Karin Orsel, Frank van der Meer, Le Luo Guan, Graham Plastow
Software Mentions: 1
Published: over 5 years ago

10.3390/cancers13071546

Pulsed-Focused Ultrasound Slows B16 Melanoma and 4T1 Breast Tumor Growth through Differential Tumor Microenvironmental Changes
Cited by: 5
Author(s): Gadi Cohen, Parwathy Chandran, Rebecca M. Lorsung, Ömer Aydın, Lauren E. Tomlinson, Robert Rosenblatt, Scott R. Burks, Joseph A. Frank
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms21041489

Metformin Alleviates Left Ventricular Diastolic Dysfunction in a Rat Myocardial Ischemia Reperfusion Injury Model
Cited by: 9
Author(s): Woori Jo, Kyung-Ku Kang, Sehyun Chae, Woo‐Chan Son
Software Mentions: 1
Published: over 6 years ago

10.1128/mBio.00053-20

New Host-Directed Therapeutics for the Treatment of Clostridioides difficile Infection
Cited by: 7
Author(s): Jourdan A. Andersson, Alex G. Peniche, Cristi L. Galindo, Prapaporn Boonma, Jian Sha, Ruth Ann Luna, Tor Savidge, Ashok K. Chopra, Sara M. Dann
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-020-57717-0

Transcriptional trajectories of anther development provide candidates for engineering male fertility in sorghum
Cited by: 17
Author(s): Namrata Dhaka, Kushagra Krishnan, Manu Kandpal, Ira Vashisht, Madan Pal, Manoj K. Sharma, Rita Sharma
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-020-57907-w

Integrated miRNA-/mRNA-Seq of the Habenulo-Interpeduncular Circuit During Acute Nicotine Withdrawal
Cited by: 9
Author(s): Alison P. Casserly, Junko Tsuji, Rubing Zhao-Shea, Corey Smith, Susanna Molas, Andrew R. Tapper, Zhiping Weng, Paul Gardner
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-020-57755-8

Mechanical forces induce an asthma gene signature in healthy airway epithelial cells
Cited by: 30
Author(s): Ayşe Kılıç, Asher Ameli, Jin‐Ah Park, Alvin T. Kho, Kelan G. Tantisira, Marc Santolini, Feixiong Cheng, Joseph F. Mitchel, Maureen McGill, Michael J. O’Sullivan, Margherita De Marzio, Amitabh Sharma, Scott H. Randell, Jeffrey M. Drazen, Jeffrey J. Fredberg, Scott T. Weiss
Software Mentions: 1
Published: over 6 years ago

10.1016/j.omtm.2020.03.019

Optimization of 5′ Untranslated Region of Modified mRNA for Use in Cardiac or Hepatic Ischemic Injury
Cited by: 22
Author(s): Nishat Sultana, Yoav Hadas, Mohammad Tofael Kabir Sharkar, Keerat Kaur, Ajit Magadum, Achamma Kurian, Nadia Hossain, Bremy Alburquerque, S.M. Masum Ahmed, Elena Chepurko, Lior Zangi
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-020-58715-y

Robust RNA-Seq of aRNA-amplified single cell material collected by patch clamp
Cited by: 6
Author(s): Jae Mun Kim, Adrian Camarena, Christopher Walker, Ming Yi Lin, Victoria Wolseley, Tade Souaiaia, Matthew E. Thornton, Brendan H. Grubbs, Robert H. Chow, Oleg V. Evgrafov, James A. Knowles
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-020-59184-z

Genetic Analysis of Agronomic Traits and Grain Iron and Zinc Concentrations in a Doubled Haploid Population of Rice (Oryza sativa L.)
Cited by: 42
Author(s): Mark Ian C. Calayugan, Andrea Kariza Formantes, Amery Amparado, Gwen Iris Descalsota-Empleo, Chau Thanh Nha, Mary Ann Inabangan-Asilo, Zin Mar Swe, Jose E. Hernandez, Teresita H. Borromeo, Antonio G. Lalusin, Merlyn S. Mendioro, Ma. Genaleen Q. Diaz, Celia B. Dela Viña, Russell Reinke, B. P. Mallikarjuna Swamy
Software Mentions: 1
Published: over 6 years ago

10.1007/s12033-012-9616-6

Fluorescence Molecular Painting of Enveloped Viruses
Cited by: 19
Author(s): Christoph Metzner, Feliks Kochan, John A. Dangerfield
Software Mentions: 1
Published: over 13 years ago

10.1038/s41598-020-59213-x

Gene expression in immortalized versus primary isolated cardiac endothelial cells
Cited by: 7
Author(s): Lisa Deng, Luisa Pollmeier, Qian Zhou, Stella Bergemann, Christoph Bode, Lutz Hein, Achim Lother
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms20184387

Differential Regulation of Anthocyanins in Green and Purple Turnips Revealed by Combined De Novo Transcriptome and Metabolome Analysis
Cited by: 62
Author(s): Hongmei Zhuang, Qian Lei, Huifang Liu, Hongwei Han, Qiang Wang, Zhonghua Tang, Yanming Ma, Hao Wang
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0033967

High Throughput Multiple Locus Variable Number of Tandem Repeat Analysis (MLVA) of Staphylococcus aureus from Human, Animal and Food Sources
Cited by: 39
Author(s): Daniel Sobral, Štefan Schwarz, Dominique Bergonier, Anne Brisabois, Andrea T. Feßler, Florence Gilbert, Kristina Kadlec, B. Lebeau, Fabienne Loisy-Hamon, Michaël Treilles, Christine Pourcel, Gilles Vergnaud
Software Mentions: 1
Published: about 14 years ago