Ecosyste.ms: Papers

10.3390/ijms22105290

Calvaria Bone Transcriptome in Mouse Models of Osteogenesis Imperfecta
Cited by: 6
Author(s): Pierre Moffatt, Iris Boraschi-Diaz, Juliana Marulanda, Ghalib Bardai, Frank Rauch
Software Mentions: 1
Published: over 3 years ago

10.1128/MRA.01598-19

Draft Genome Sequence of the Strawberry Anthracnose Pathogen Colletotrichum fructicola
Cited by: 4
Author(s): Andrew D. Armitage, Charlotte F. Nellist, Helen Bates, Liqing Zhang, Xiaohua Zou, Qing‐Hua Gao, Richard J. Harrison
Software Mentions: 1
Published: over 4 years ago

10.1002/mbo3.1042

Insights into the mechanism of cyanobacteria removal by the algicidal fungi <i>Bjerkandera adusta</i> and <i>Trametes versicolor</i>
Cited by: 8
Author(s): Guomin Han, Hui Ma, Shenrong Ren, Xueyan Gao, Xiaolong He, Suwen Zhu, Ruining Deng, Shihua Zhang
Software Mentions: 1
Published: over 4 years ago

10.1186/s12934-015-0397-z

Reversing methanogenesis to capture methane for liquid biofuel precursors
Cited by: 109
Author(s): Valerie W. C. Soo, Michael J. McAnulty, Arti Tripathi, Fayin Zhu, Limin Zhang, Emmanuel Hatzakis, Philip B. Smith, Saumya Agrawal, Hadi Nazem‐Bokaee, Saratram Gopalakrishnan, Howard M. Salis, James G. Ferry, Costas D. Maranas, Andrew D. Patterson, Thomas K. Wood
Software Mentions: 1
Published: almost 9 years ago

10.1128/mBio.02765-18

<i>Mucor circinelloides</i> Thrives inside the Phagosome through an Atf-Mediated Germination Pathway
Cited by: 26
Author(s): Carlos Pérez-Arques, María Isabel Navarro-Mendoza, Laura Murcia, Carlos Lax, Pablo Martínez-García, Joseph Heitman, Francisco E. Nicolás
Software Mentions: 1
Published: over 5 years ago

10.1128/mBio.00437-19

Mutations in <i>hmg1</i> , Challenging the Paradigm of Clinical Triazole Resistance in Aspergillus fumigatus
Cited by: 76
Author(s): Jeffrey M. Rybak, Wenbo Ge, Nathan P. Wiederhold, Josie E. Parker, Steven L. Kelly, P. David Rogers, Jarrod R. Fortwendel
Software Mentions: 1
Published: over 5 years ago

10.1128/mBio.01362-19

Pseudomonas aeruginosa Regulatory Protein AnvM Controls Pathogenicity in Anaerobic Environments and Impacts Host Defense
Cited by: 13
Author(s): Yingchao Zhang, Chunkui Zhou, Qinqin Pu, Qun Wu, Shirui Tan, Xiaolong Shao, Weitong Zhang, Yingpeng Xie, Rongpeng Li, Xue‐Jie Yu, Rui Wang, Liang Zhang, Min Wu, Xin Deng
Software Mentions: 1
Published: about 5 years ago

10.1186/2110-5820-1-38

Pilot proof of concept clinical trials of Stochastic Targeted (STAR) glycemic control
Cited by: 81
Author(s): Alicia Evans, Geoffrey M. Shaw, Aaron Le Compte, Chia -Siong Tan, Logan Ward, James Steel, Christopher G. Pretty, Leesa Pfeifer, Sophie Penning, Fatanah M. Suhaimi, Matthew Signal, Thomas Desaive, J. Geoffrey Chase
Software Mentions: 1
Published: about 13 years ago

10.1016/j.mex.2019.12.002

Method for RNA extraction and transcriptomic analysis of single fungal spores
Cited by: 3
Author(s): Ivey A. Geoghegan, Richard D. Emes, David B. Archer, Simon V. Avery
Software Mentions: 1
Published: almost 5 years ago

10.3390/mps2020039

Cell-Free Synthetic Biology Platform for Engineering Synthetic Biological Circuits and Systems
Cited by: 23
Author(s): Dohyun Jeong, Melissa Klocke, Siddharth Agarwal, Guntae Kim, Seungdo Choi, Elisa Franco, Jongmin Kim
Software Mentions: 1
Published: over 5 years ago

10.3390/ma14040820

Selectivity of Mixed Iron-Cobalt Spinels Deposited on a N,S-Doped Mesoporous Carbon Support in the Oxygen Reduction Reaction in Alkaline Media
Cited by: 14
Author(s): Aldona Kostuch, Joanna Gryboś, Szymon Wierzbicki, Zbigniew Sojka, Krzysztof Kruczała
Software Mentions: 1
Published: almost 4 years ago

10.3390/md17050300

Activity Improvement and Vital Amino Acid Identification on the Marine-Derived Quorum Quenching Enzyme MomL by Protein Engineering
Cited by: 13
Author(s): Jiayi Wang, Jing Lin, Yunhui Zhang, Jingjing Zhang, Tao Feng, Hui Li, Xianghong Wang, Qingxiang Sun, Xiaohua Zhang, Yan Wang
Software Mentions: 1
Published: over 5 years ago

10.3390/md13041739

Co-Processed Chitin-Mannitol as a New Excipient for Oro-Dispersible Tablets
Cited by: 20
Author(s): Nidal Daraghmeh, Babur Z. Chowdhry, Stephen A. Leharne, Mahmoud M. H. Al Omari, Adnan A. Badwan
Software Mentions: 1
Published: over 9 years ago

10.3390/md16120466

Cytotoxic Potential of the Novel Horseshoe Crab Peptide Polyphemusin III
Cited by: 25
Author(s): Mariana B Marggraf, Pavel V. Panteleev, Anna A. Emelianova, Maxim Sorokin, Ilia A. Bolosov, Anton Buzdin, Denis Kuzmin, Tatiana V. Ovchinnikova
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12936-017-1730-2

MinorityReport, software for generalized analysis of causal genetic variants
Cited by: 4
Author(s): Jeremy A. Horst, Wesley Wu, Joseph L. DeRisi
Software Mentions: 1
Published: over 7 years ago

10.1128/mBio.00053-20

New Host-Directed Therapeutics for the Treatment of Clostridioides difficile Infection
Cited by: 7
Author(s): Jourdan A. Andersson, Alex G. Peniche, Cristi L. Galindo, Prapaporn Boonma, Jian Sha, Ruth Ann Luna, Tor Savidge, Ashok K. Chopra, Sara M. Dann
Software Mentions: 1
Published: over 4 years ago

10.5334/aogh.3212

Training Curriculum, Skills, and Competencies for Global Health Leaders: Good Practices and Lessons Learned
Cited by: 2
Author(s): Meike Schleiff, Patrick Mburugu, John Cape, Rama Mwenesi, Nathanael Sirili, Sean Tackett, David P. Urassa, Bhakti Hansoti, Yohana Mashalla
Software Mentions: 1
Published: over 3 years ago

10.26508/lsa.202000912

Modulation of Aub–TDRD interactions elucidates piRNA amplification and germplasm formation
Cited by: 4
Author(s): Nicholas Vrettos, Manolis Maragkakis, Panagiotis Alexiou, Paraskevi Sgourdou, Fadia Ibrahim, Daniel E. Palmieri, Yohei Kirino, Zissimos P. Mourelatos
Software Mentions: 1
Published: almost 4 years ago

10.26508/lsa.201800289

Main constraints for RNAi induced by expressed long dsRNA in mouse cells
Cited by: 12
Author(s): Tomáš Demeter, Michaela Vaškovičová, Radek Malı́k, Filip Horvat, Josef Pasulka, Eliška Svobodová, Matyáš Flemr, Petr Svoboda
Software Mentions: 1
Published: almost 6 years ago

10.26508/lsa.201800092

DHX15 regulates CMTR1-dependent gene expression and cell proliferation
Cited by: 32
Author(s): Francisco Iñesta-Vaquera, Viduth K. Chaugule, Alison Galloway, L C Chandler, Alejandro Rojas-Fernández, Simone Weidlich, Mark Peggie, Victoria H. Cowling
Software Mentions: 1
Published: over 6 years ago

10.5334/aogh.3260

Training Global Health Leaders: A Critical Review of Competency Gaps
Cited by: 2
Author(s): Bhakti Hansoti, E. Adelaide Hahn, Caroline Dolive, Anike Akridge, Melanie Atwell, Anant Mishra, Meike Schleiff
Software Mentions: 1
Published: almost 4 years ago

10.3390/ijms22115741

Molecular Insights into the Role of Cysteine-Rich Peptides in Induced Resistance to Fusarium oxysporum Infection in Tomato Based on Transcriptome Profiling
Cited by: 7
Author(s): Marina P. Slezina, Е. А. Истомина, Tatyana V. Korostyleva, Alexey S. Kovtun, Artem S. Kasianov, Alexey A. Konopkin, Л. А. Щербакова
Software Mentions: 1
Published: over 3 years ago

10.5334/aogh.3219

Gaps, Challenges, and Opportunities for Global Health Leadership Training
Cited by: 2
Author(s): Joachim Voss, Sandul Yasobant, Anike Akridge, Edith A. M. Tarimo, Esther Seloilwe, David Hausner, Yohana Mashalla
Software Mentions: 1
Published: over 3 years ago

10.26508/lsa.202000969

Specific N-cadherin–dependent pathways drive human breast cancer dormancy in bone marrow
Cited by: 10
Author(s): Garima Sinha, Alejandra I. Ferrer, Seda Ayer, Markos H. El-Far, Sri Harika Pamarthi, Yahaira Naaldijk, Pradeep Barak, Oleta A. Sandiford, Bernadette Bibber, Ghassan Yehia, Steven J. Greco, Jie‐Gen Jiang, Margarette Bryan, Rakesh Kumar, Nicholas M. Ponzio, Jean‐Pierre Etchegaray, Pranela Rameshwar
Software Mentions: 1
Published: over 3 years ago

10.26508/lsa.201800157

MBNL1 alternative splicing isoforms play opposing roles in cancer
Cited by: 34
Author(s): Tommaso Tabaglio, Diana Low, Winnie Koon Lay Teo, Pierre-Alexis Goy, Piotr Cywoniuk, Heike Wollmann, Jessica Ho, Damien Tan, Joey Aw, Andrea Pavesi, Krzysztof Sobczak, Dave Keng Boon Wee, Ernesto Guccione
Software Mentions: 1
Published: about 6 years ago

10.1128/mBio.01006-21

The SARS-CoV-2 Transcriptome and the Dynamics of the S Gene Furin Cleavage Site in Primary Human Airway Epithelia
Cited by: 12
Author(s): Wei Zou, Min Xiong, Siyuan Hao, Elizabeth Yan Zhang, Nathalie Baumlin, Michael D. Kim, Matthias Salathé, Ziying Yan, Jianming Qiu
Software Mentions: 1
Published: over 3 years ago

10.1128/mBio.00967-21

Identification of Oxygen-Independent Pathways for Pyridine Nucleotide and Coenzyme A Synthesis in Anaerobic Fungi by Expression of Candidate Genes in Yeast
Cited by: 6
Author(s): Thomas Perli, Aurin M. Vos, Jonna Bouwknegt, Wijb J C Dekker, Sanne J Wiersma, Christiaan Mooiman, Raúl A. Ortiz‐Merino, Jean‐Marc Daran, Jack T. Pronk
Software Mentions: 1
Published: over 3 years ago

10.1038/s41375-021-01121-8

Asxl1 C-terminal mutation perturbs neutrophil differentiation in zebrafish
Cited by: 11
Author(s): Fang Xiao, Song’en Xu, Yiyue Zhang, Jin Xu, Zhibin Huang, Wei Liu, Shunqing Wang, Kuangyu Yen, Wenqing Zhang
Software Mentions: 1
Published: almost 4 years ago

10.1038/s41375-021-01376-1

CXCR4 hyperactivation cooperates with TCL1 in CLL development and aggressiveness
Cited by: 4
Author(s): Richard T. Lewis, H. Carlo Maurer, Nikita Singh, Irene González-Menéndez, Matthias Wirth, Markus Schick, Zhang Le, Konstandina Isaakidis, Anna Katharina Scherger, Veronika Schulze, Junyan Lu, Thorsten Zenz, Katja Steiger, Roland Rad, Leticia Quintanilla-Martı́nez, Marion Espéli, Karl Balabanian, Ulrich Keller, Stefan Habringer
Software Mentions: 1
Published: over 3 years ago

10.1038/s41375-018-0108-y

Kinase domain activation through gene rearrangement in multiple myeloma
Cited by: 26
Author(s): Gareth J. Morgan, Jie He, Ruslana G. Tytarenko, Purvi Patel, Owen Stephens, Shan Zhong, Shayu Deshpande, Michael Bauer, Niels Weinhold, Carolina Schinke, Leo Rasche, Mark Bailey, Siraj M. Ali, Jeff Ross, Vincent A. Miller, P. J. Stephens, Sharmilan Thanendrarajan, Maurizio Zangari, Frits van Rhee, Tariq I. Mughal, Faith E. Davies, Brian A. Walker
Software Mentions: 1
Published: over 6 years ago

10.1038/s41375-021-01263-9

Gene expression derived from alternative promoters improves prognostic stratification in multiple myeloma
Cited by: 7
Author(s): Luis Vítores Valcárcel, Ane Amundarain, Marta Kulis, Stella Charalampopoulou, Ari Melnick, Jesús F. San Miguel, José I. Martín‐Subero, Francisco J Planes, Xabier Agirre, Felipe Prósper
Software Mentions: 1
Published: over 3 years ago

10.1038/s41375-018-0310-y

Bone marrow MSCs in MDS: contribution towards dysfunctional hematopoiesis and potential targets for disease response to hypomethylating therapy
Cited by: 49
Author(s): Zhiyong Poon, Niraja Dighe, Subhashree Venkatesan, Alice Cheung, Xianqun Fan, Sudipto Bari, Monalisa Hota, Sujoy Ghosh, William Ying Khee Hwang
Software Mentions: 1
Published: almost 6 years ago

10.1128/mBio.01816-21

<i>Orientia tsutsugamushi</i> Nucleomodulin Ank13 Exploits the RaDAR Nuclear Import Pathway To Modulate Host Cell Transcription
Cited by: 10
Author(s): Haley E. Adcox, Amanda L. Hatke, Shelby E. Andersen, S. Dutta Gupta, Nathan B Otto, Mary M. Weber, Richard T. Marconi, Jason A. Carlyon
Software Mentions: 1
Published: about 3 years ago

10.1128/mSphere.00555-17

The Human Gut Microbial Metabolome Modulates Fungal Growth via the TOR Signaling Pathway
Cited by: 45
Author(s): Carlos García, Faïza Tebbji, Michelle Daigneault, Ningning Liu, Julia R. Köhler, Emma Allen‐Vercoe, Adnane Sellam
Software Mentions: 1
Published: almost 7 years ago

10.5334/aogh.3194

Experiential Learning and Mentorship in Global Health Leadership Programs: Capturing Lessons from Across the Globe
Cited by: 8
Author(s): Daniela Rodríguez, Nasreen Jessani, Joseph R. Zunt, Sara Ardila-Gómez, Patience A. Muwanguzi, Sylvester Ndeso Atanga, Bruno F. Sunguya, Carey Farquhar, Esther Nasuuna
Software Mentions: 1
Published: over 3 years ago

10.1128/mSphere.00386-19

Optimizing Systems for Cas9 Expression in Toxoplasma gondii
Cited by: 32
Author(s): Benedikt M. Markus, George W. Bell, Hernán Lorenzi, Sebastian Lourido
Software Mentions: 1
Published: over 5 years ago

10.1186/1744-859X-13-17

Antidepressant treatment response is modulated by genetic and environmental factors and their interactions
Cited by: 18
Author(s): D Kovács, Xénia Gonda, Péter Petschner, Andrea Edit Édes, Nóra Eszlári, György Bagdy, Gabriella Juhász
Software Mentions: 1
Published: almost 11 years ago

10.3390/ijms22126478

Differential Regulation of Gonadotropins as Revealed by Transcriptomes of Distinct LH and FSH Cells of Fish Pituitary
Cited by: 15
Author(s): Lian Hollander-Cohen, Matan Golan, Berta Levavi‐Sivan
Software Mentions: 1
Published: over 3 years ago

10.1038/s41375-020-01043-x

IDH1/2 mutations in acute myeloid leukemia patients and risk of coronary artery disease and cardiac dysfunction—a retrospective propensity score analysis
Cited by: 24
Author(s): Badder Kattih, Amir Shirvani, Piroska Klement, Abel Martin Garrido, Razif Gabdoulline, Alessandro Liebich, Maximilian Brandes, Anuhar Chaturvedi, Timon Seeger, Felicitas Thol, Gudrun Göhring, Brigitte Schlegelberger, Robert Geffers, David John, Udo Bavendiek, Johann Bauersachs, Arnold Ganser, Joerg Heineke, Michael Heuser
Software Mentions: 1
Published: about 4 years ago

10.1186/s40170-018-0186-3

CD38 is methylated in prostate cancer and regulates extracellular NAD+
Cited by: 26
Author(s): Jack Mottahedeh, Michael C. Haffner, Tristan Grogan, Takahiro Hashimoto, Preston D. Crowell, Himisha Beltran, Andrea Sboner, Rohan Bareja, David Esopi, William B. Isaacs, Srinivasan Yegnasubramanian, Matthew B. Rettig, David Elashoff, Elizabeth A. Platz, Angelo M. De Marzo, Michael A. Teitell, Andrew S. Goldstein
Software Mentions: 1
Published: about 6 years ago

10.1186/s40170-021-00246-9

GLUT5 (SLC2A5) enables fructose-mediated proliferation independent of ketohexokinase
Cited by: 11
Author(s): Roger J. Liang, Samuel Taylor, Navid Nahiyaan, Jun-Ho Song, Charles J. Murphy, Ezequiel Dantas, Shu‐Yuan Cheng, Ting-Wei Hsu, Shakti Ramsamooj, Rahul Grover, Seo-Kyoung Hwang, Bryan Ngo, Lewis C. Cantley, Kyu Y. Rhee, Marcus D. Goncalves
Software Mentions: 1
Published: over 3 years ago

10.1007/s10439-012-0530-7

Head Impact Exposure in Youth Football
Cited by: 200
Author(s): R.W. Daniel, Steven Rowson, Stefan M. Duma
Software Mentions: 1
Published: almost 13 years ago

10.1186/2049-3002-2-2

Inhibition of 6-phosphofructo-2-kinase (PFKFB3) induces autophagy as a survival mechanism
Cited by: 80
Author(s): Alden C. Klarer, Julie O’Neal, Yoannis Imbert-Fernandez, Amy Clem, S.E. Ellis, Jennifer A. Clark, Brian F. Clem, Jason Chesney, Sucheta Telang
Software Mentions: 1
Published: almost 11 years ago

10.1002/cam4.42

Proceedings of the I ndo‐ U.S. bilateral workshop on accelerating botanicals/biologics agent development research for cancer chemoprevention, treatment, and survival
Cited by: 2
Author(s): Nagi B. Kumar, Medha Dhurandhar, Bharat B. Aggarwal, Shrikant Anant, Kenyon G. Daniel, Gary Deng, Julie Y. Djeu, Jinhui Dou, Ernest T. Hawk, B. Jayaram, Jia Lee, Rajendra Joshi, Madhuri Kararala, Devarajan Karunagaran, Ömer Küçük, Lalit Kumar, Mokenge P. Malafa, G. J. Samathanam, Fazlul H. Sarkar, Maqsood Siddiqi, Rana P. Singh, A. K. Srivastava, Jeffrey D. White
Software Mentions: 1
Published: almost 12 years ago

10.1186/s13058-020-01361-z

CRIPTO antagonist ALK4L75A-Fc inhibits breast cancer cell plasticity and adaptation to stress
Cited by: 4
Author(s): Ozlen Balcioglu, Richard E. Heinz, D.W. Freeman, Brooke L. Gates, Berhane M. Hagos, Evan Booker, Elnaz Mirzaei Mehrabad, Hyrum T Diesen, Kishan Bhakta, Supraja Ranganathan, Masami Kachi, Mathias Leblanc, Peter C. Gray, Benjamin T. Spike
Software Mentions: 1
Published: about 4 years ago

10.1007/s10439-019-02330-0

Development of the STAR Evaluation System for Assessing Bicycle Helmet Protective Performance
Cited by: 40
Author(s): Megan L. Bland, Craig McNally, David S. Zuby, Becky C. Mueller, Steven Rowson
Software Mentions: 1
Published: over 5 years ago

10.1128/mSystems.00204-20

Overexpression of the Small RNA PA0805.1 in Pseudomonas aeruginosa Modulates the Expression of a Large Set of Genes and Proteins, Resulting in Altered Motility, Cytotoxicity, and Tobramycin Resistance
Cited by: 13
Author(s): Shannon R. Coleman, Maren L. Smith, Victor Spicer, Ying Lao, Neeloffer Mookherjee, Robert E. W. Hancock
Software Mentions: 1
Published: over 4 years ago

10.1186/s13058-020-01300-y

New generation breast cancer cell lines developed from patient-derived xenografts
Cited by: 25
Author(s): Jessica Finlay-Schultz, Britta M. Jacobsen, Duncan Riley, Kiran Paul, Scott A. Turner, Andrea Ferreira‐Gonzalez, J. Chuck Harrell, Peter Kabos, Carol A. Sartorius
Software Mentions: 1
Published: over 4 years ago

10.1111/bjd.16573

Inherited pulmonary cylindromas: extending the phenotype of <i>CYLD</i> mutation carriers
Cited by: 8
Author(s): Sarah Madeline Brown, M. Arefi, Robert Stones, PS Loo, Sion Barnard, C. A. Bloxham, Niki Stefanos, J.A.A. Langtry, S. A. Worthy, Eduardo Calonje, Akhtar Husain, Neil Rajan
Software Mentions: 1
Published: over 6 years ago

10.1038/s41413-020-0094-3

uPAR antibody (huATN-658) and Zometa reduce breast cancer growth and skeletal lesions
Cited by: 21
Author(s): Niaz Mahmood, Ani Arakelian, Haseeb Ahmed Khan, Imrana Tanvir, Andrew P. Mazar, Shafaat A. Rabbani
Software Mentions: 1
Published: over 4 years ago

10.1007/s10439-015-1278-7

Hockey STAR: A Methodology for Assessing the Biomechanical Performance of Hockey Helmets
Cited by: 78
Author(s): Bethany Rowson, Steven Rowson, Stefan M. Duma
Software Mentions: 1
Published: over 9 years ago

10.1128/mSystems.00898-20

Endogenous Metabolites Released by Sanitized Sprouting Alfalfa Seed Inhibit the Growth of Salmonella enterica
Cited by: 2
Author(s): Ga-Hee Ban, Yue Dai, Tao Huan, Alfred Ke, Pascal Delaquis, Siyun Wang
Software Mentions: 1
Published: over 3 years ago

10.1016/j.bone.2018.06.001

Genome-wide association study of extreme high bone mass: Contribution of common genetic variation to extreme BMD phenotypes and potential novel BMD-associated genes
Cited by: 36
Author(s): Celia L Gregson, Felicity Newell, Paul Leo, Graeme R. Clark, Lavinia Paternoster, Mhairi Marshall, Vincenzo Forgetta, John Morris, Bing Ge, Xiao Bao, J. H. Duncan Bassett, Graham R. Williams, Scott E. Youlten, Peter I. Croucher, George Davey Smith, David M. Evans, John P. Kemp, Matthew A. Brown, Jonathan H Tobias, Emma L. Duncan
Software Mentions: 1
Published: about 6 years ago

10.1038/bcj.2017.94

High somatic mutation and neoantigen burden are correlated with decreased progression-free survival in multiple myeloma
Cited by: 121
Author(s): Amber C. Miller, Yan W. Asmann, Laura Cattaneo, Esteban Braggio, Jonathan J. Keats, Daniel Auclair, Sagar Lonial, Stephen J. Russell, A. Keith Stewart
Software Mentions: 1
Published: about 7 years ago

10.1186/s13068-015-0391-z

Transcriptional program for nitrogen starvation-induced lipid accumulation in Chlamydomonas reinhardtii
Cited by: 53
Author(s): Adrián López García de Lomana, Sascha Schäuble, Jacob J. Valenzuela, Saheed Imam, Warren Carter, Damla D. Bilgin, Christopher B. Yohn, Serdar Turkarslan, David J Reiss, Mónica V. Orellana, Nathan D. Price, Nitin S. Baliga
Software Mentions: 1
Published: almost 9 years ago

10.1002/bit.27767

Rapid optimization of processes for the integrated purification of biopharmaceuticals
Cited by: 4
Author(s): Laura E. Crowell, S. Rodríguez, Kerry R. Love, Steven M. Cramer, J. Christopher Love
Software Mentions: 1
Published: over 3 years ago

10.3390/biom11081171

Characterization of the Skeletal Muscle Secretome Reveals a Role for Extracellular Vesicles and IL1α/IL1β in Restricting Fibro/Adipogenic Progenitor Adipogenesis
Cited by: 10
Author(s): Simone Vumbaca, Giulio Giuliani, Valeria Fiorentini, Flavia Tortolici, Andrea Cerquone Perpetuini, Federica Riccio, Simona Sennato, Cesare Gargioli, Claudia Fuoco, Luisa Castagnoli, Gianni Cesareni
Software Mentions: 1
Published: over 3 years ago

10.3390/biom11081182

Design and Evaluation of Synthetic RNA-Based Incoherent Feed-Forward Loop Circuits
Cited by: 7
Author(s): Seongho Hong, Dohyun Jeong, Jordan Ryan, Mathias Foo, Xiangdong Tang, Jongmin Kim
Software Mentions: 1
Published: over 3 years ago

10.3390/biom9120785

LCAT, ApoD, and ApoA1 Expression and Review of Cholesterol Deposition in the Cornea
Cited by: 19
Author(s): Rhonda Flores, Xueting Jin, Joan Chang, Connie Zhang, David G. Cogan, Ernst J. Schaefer, Howard S. Kruth
Software Mentions: 1
Published: almost 5 years ago

10.1007/s10439-012-0660-y

The Virginia Tech Response
Cited by: 22
Author(s): Steven Rowson, Stefan M. Duma
Software Mentions: 1
Published: about 12 years ago

10.1186/s12974-020-01842-0

Stress-induced NLRP3 inflammasome activation negatively regulates fear memory in mice
Cited by: 56
Author(s): Yuan Dong, Shuoshuo Li, Yiming Lu, Xiaoheng Li, Yuhe Liao, Zhixin Peng, Yunfeng Li, Lin Hou, Zengqiang Yuan, Jinbo Cheng
Software Mentions: 1
Published: over 4 years ago

10.3390/biomedicines9081057

The Histone Variant MacroH2A1 Impacts Circadian Gene Expression and Cell Phenotype in an In Vitro Model of Hepatocellular Carcinoma
Cited by: 2
Author(s): Annalucia Carbone, Elisabetta De Santis, Olga Cela, Vincenzo Giambra, Luca Miele, Giuseppe Marrone, Antonio Grieco, Marcus Buschbeck, Nazzareno Capitanio, Tommaso Mazza, Gianluigi Mazzoccoli
Software Mentions: 1
Published: over 3 years ago

10.3390/biomedicines8120590

Authentication of Primary Murine Cell Lines by a Microfluidics-Based Lab-On-Chip System
Cited by: 4
Author(s): Ying‐Fen Hong, Nikita Singh, Stefanos A. Bamopoulos, Enio Gjerga, Laura K. Schmalbrock, Karl Balabanian, Markus Schick, Ulrich Keller, Matthias Wirth
Software Mentions: 1
Published: almost 4 years ago

10.3390/ijms22136872

Sympathetic Denervation Alters the Inflammatory Response of Resident Muscularis Macrophages upon Surgical Trauma and Ameliorates Postoperative Ileus in Mice
Cited by: 9
Author(s): Shilpashree Mallesh, Reiner Schneider, Bianca Schneiker, Mariola Lysson, Patrik Efferz, Eaton Lin, Wouter J. de Jonge, Sven Wehner
Software Mentions: 1
Published: over 3 years ago

10.1155/2018/7082095

Stay-Green QTLs Response in Adaptation to Post-Flowering Drought Depends on the Drought Severity
Cited by: 8
Author(s): Nasrein Mohamed Kamal, Yasir Serag Alnor Gorafi, Hisashi Tsujimoto, Abdelbagi Mukhtar Ali Ghanim
Software Mentions: 1
Published: about 6 years ago

10.1155/2013/719570

Low Circulating Protein C Levels Are Associated with Lower Leg Ulcers in Patients with Diabetes
Cited by: 12
Author(s): Kaley Whitmont, Greg Fulcher, Ian A. Reid, Meilang Xue, Kelly McKelvey, Yuanliang Xie, Margaret Aboud, Christina Ward, Michael Smith, Alan Cooper, Lyn March, Chris Jackson
Software Mentions: 1
Published: almost 12 years ago

10.1186/s40478-021-01170-1

Novel targetable FGFR2 and FGFR3 alterations in glioblastoma associate with aggressive phenotype and distinct gene expression programs
Cited by: 21
Author(s): Maria-Magdalena Georgescu, Mohammad Zahidul Islam, Yan Li, James Traylor, Anil Nanda
Software Mentions: 1
Published: over 3 years ago

10.1186/1475-925X-13-43

Reducing the impact of insulin sensitivity variability on glycaemic outcomes using separate stochastic models within the STAR glycaemic protocol
Cited by: 17
Author(s): Felicity Thomas, Christopher G. Pretty, Liam Fisk, Geoffrey M. Shaw, J. Geoffrey Chase, Thomas Desaive
Software Mentions: 1
Published: over 10 years ago

10.1186/s12938-019-0720-8

3D kernel-density stochastic model for more personalized glycaemic control: development and in-silico validation
Cited by: 15
Author(s): Vincent Uyttendaele, Jennifer L. Knopp, Shaun Davidson, Thomas Desaive, Balázs Benyó, Geoffrey M. Shaw, J. Geoffrey Chase
Software Mentions: 1
Published: about 5 years ago

10.1186/s12938-020-00771-6

Risk and reward: extending stochastic glycaemic control intervals to reduce workload
Cited by: 4
Author(s): Vincent Uyttendaele, Jennifer L. Knopp, Geoffrey M. Shaw, Thomas Desaive, J. Geoffrey Chase
Software Mentions: 1
Published: over 4 years ago

10.1186/1475-925X-11-58

Second pilot trials of the STAR-Liege protocol for tight glycemic control in critically ill patients
Cited by: 15
Author(s): Sophie Penning, Aaron J. Le Compte, Paul Massion, Katherine T. Moorhead, Christopher G. Pretty, Jean‐Charles Preiser, Geoffrey M. Shaw, Fatanah M. Suhaimi, Thomas Desaive, J. Geoffrey Chase
Software Mentions: 1
Published: almost 13 years ago

10.3390/biology10080706

New Approach for Detection of Normal Alternative Splicing Events and Aberrant Spliceogenic Transcripts with Long-Range PCR and Deep RNA Sequencing
Cited by: 2
Author(s): Vita Šetrajčič Dragoš, Vida Stegel, Ana Blatnik, Gašper Klančar, Mateja Krajc, Srdjan Novaković
Software Mentions: 1
Published: over 3 years ago

10.3390/biology10070626

Revealing New Landscape of Turbot (Scophthalmus maximus) Spleen Infected with Aeromonas salmonicida through Immune Related circRNA-miRNA-mRNA Axis
Cited by: 4
Author(s): Ting Xue, Yiping Liu, Min Cao, Mengyu Tian, Lu Zhang, Beibei Wang, Xiaoli Liu, Chao Li
Software Mentions: 1
Published: over 3 years ago

10.7554/eLife.44702

CNS myelination and remyelination depend on fatty acid synthesis by oligodendrocytes
Cited by: 82
Author(s): Penelope Dimas, Laura Montani, Jorge A. Pereira, Daniel Antunes Moreno, Martin Trötzmüller, Joanne Gerber, Clay F. Semenkovich, Harald Köfeler, Ueli Suter
Software Mentions: 1
Published: over 5 years ago

10.3390/biology10060557

Genome-Wide Atlas of Promoter Expression Reveals Contribution of Transcribed Regulatory Elements to Genetic Control of Disuse-Mediated Atrophy of Skeletal Muscle
Cited by: 1
Author(s): Sergey S. Pintus, Ilya R. Akberdin, Ivan S. Yevshin, Pavel A. Makhnovskii, O. V. Tyapkina, IslamR Nigmetzyanov, Л. Ф. Нуруллин, Ruslan Devyatiyarov, Elena Shagimardanova, D. V. Popov, Fedor A. Kolpakov, Oleg Gusev, Guzel Gazizova
Software Mentions: 1
Published: over 3 years ago

10.7554/eLife.39304

An ancient germ cell-specific RNA-binding protein protects the germline from cryptic splice site poisoning
Cited by: 20
Author(s): Ingrid Ehrmann, James H Crichton, Matthew R. Gazzara, Katherine James, Yilei Liu, Sushma Nagaraja Grellscheid, Tomaž Curk, Dirk G. de Rooij, Jannetta S. Steyn, Simon Cockell, Ian R. Adams, Yoseph Barash, David Elliott
Software Mentions: 1
Published: almost 6 years ago

10.3390/biology9080221

The Teleost Thymus in Health and Disease: New Insights from Transcriptomic and Histopathological Analyses of Turbot, Scophthalmus maximus
Cited by: 8
Author(s): Paolo Ronza, Diego Robledo, Ana Losada, Roberto Bermúdez, Belén G. Pardo, Paulino Martı́nez, María Isabel Quiroga
Software Mentions: 1
Published: over 4 years ago

10.1186/s13293-018-0167-9

Identification of novel candidate genes for 46,XY disorders of sex development (DSD) using a C57BL/6J-Y POS mouse model
Cited by: 12
Author(s): Hayk Barseghyan, Aleisha Symon, Mariam Zadikyan, Miguel Almalvez, Eva Eugenie Rose Segura, Ascia Eskin, Éric Vilain, Valerie A. Arboleda, Ruth Baxter, Stanley F. Nelson, Emmanuèle C. Délot, Vincent R. Harley
Software Mentions: 1
Published: almost 7 years ago

10.1186/s40659-018-0185-4

ADAR1-mediated RNA-editing of 3′UTRs in breast cancer
Cited by: 36
Author(s): E Sagredo, Alejandro Blanco, Alfredo I. Sagredo, Paola Pérez, Gonzalo Sepúlveda-Hermosilla, Fernanda Morales, Bettina Müller, Ricardo A. Verdugo, Katherine Marcelain, Olivier Harismendy, Ricardo Armisén
Software Mentions: 1
Published: about 6 years ago

10.1242/bio.054627

Adenosine triphosphate Binding Cassette subfamily C member 1 (ABCC1) overexpression reduces APP processing and increases alpha- versus beta-secretase activity, <i>in vitro</i>
Cited by: 2
Author(s): Wayne M. Jepsen, Matthew De Both, Ashley L. Siniard, Keri Ramsey, Ignazio S. Piras, Marcus Naymik, Adrienne Henderson, Matthew J. Huentelman
Software Mentions: 1
Published: almost 5 years ago

10.1242/bio.053348

Single-cell sequencing reveals the potential oncogenic expression atlas of human iPSC-derived cardiomyocytes
Cited by: 5
Author(s): Minglin Ou, Min Zhao, Chunhong Li, Donge Tang, Yong Xu, Weier Dai, Weiguo Sui, Yue Zhang, Zhen Xiang, Chune Mo, Hua Lin, Yong Dai
Software Mentions: 1
Published: almost 4 years ago

10.1098/rsbl.2021.0342

Horizontal transfer and subsequent explosive expansion of a DNA transposon in sea kraits ( <i>Laticauda</i> )
Cited by: 10
Author(s): James D. Galbraith, Alastair J. Ludington, Kate L. Sanders, Alexander Suh, David L. Adelson
Software Mentions: 1
Published: about 3 years ago

10.1116/1.4985184

Happy 70th birthday to Buddy Ratner!!
Cited by: 1
Author(s): Allan S. Hoffman
Software Mentions: 1
Published: over 7 years ago

10.1093/bioinformatics/btaa779

Shark: fishing relevant reads in an RNA-Seq sample
Cited by: 7
Author(s): Luca Denti, Yuri Pirola, Marco Previtali, Tamara Ceccato, Gianluca Della Vedova, Raffaella Rizzi, Paola Bonizzoni
Software Mentions: 1
Published: about 4 years ago

10.1093/bioinformatics/btab017

Hardware acceleration of genomics data analysis: challenges and opportunities
Cited by: 6
Author(s): Tony Robinson, Jim Harkin, Priyank Shukla
Software Mentions: 1
Published: over 3 years ago

10.3390/ijms22137002

Sex-Based Differences in Cardiac Gene Expression and Function in BDNF Val66Met Mice
Cited by: 1
Author(s): Marcus Negron, Jeffrey Kristensen, Van Thuan Nguyen, Lauren E Gansereit, F Raucci, Julia L Chariker, Aaron Heck, Imamulhaq Brula, Gabrielle Kitchen, Cassandra P. Awgulewitsch, Lin Zhong, Eric C. Rouchka, Simran Banga, Cristi L. Galindo
Software Mentions: 1
Published: over 3 years ago

10.7554/eLife.49158

Neuronal TORC1 modulates longevity via AMPK and cell nonautonomous regulation of mitochondrial dynamics in C. elegans
Cited by: 65
Author(s): Yue Zhang, Anne Lanjuin, Suvagata Roy Chowdhury, Meeta Mistry, Carlos Giovanni Silva-García, Heather J. Weir, Chia-Lin Lee, Caroline C. Escoubas, Emina Tabakovic, William Mair
Software Mentions: 1
Published: over 5 years ago

10.1007/s10439-019-02345-7

Development and Multi-Scale Validation of a Finite Element Football Helmet Model
Cited by: 24
Author(s): William Decker, Alexander M. Baker, Xin Ye, Philip J. Brown, Joel D. Stitzel, F. Scott Gayzik
Software Mentions: 1
Published: about 5 years ago

10.1093/bioinformatics/btx668

Evaluation of tools for long read RNA-seq splice-aware alignment
Cited by: 55
Author(s): Krešimir Križanović, Amina Echchiki, Julien Roux, Mile Šikić
Software Mentions: 1
Published: about 7 years ago

10.7554/eLife.54298

Targeting mir128-3p alleviates myocardial insulin resistance and prevents ischemia-induced heart failure
Cited by: 13
Author(s): Andrea Ruiz‐Velasco, Min Zi, Susanne Hille, Tayyiba Azam, Namrita Kaur, Juwei Jiang, Binh Nguyen, Karolina Sekeres, Pablo Binder, Lucy Collins, Fay Pu, Han Xiao, Kaomei Guan, Norbert Frey, Elizabeth J. Cartwright, Oliver Müller, Xin Wang, Wei Liu
Software Mentions: 1
Published: over 4 years ago

10.1093/bioinformatics/btw076

<i>SplAdder</i>: identification, quantification and testing of alternative splicing events from RNA-Seq data
Cited by: 117
Author(s): André Kahles, Cheng Soon Ong, Yi Zhong, Gunnar Rätsch
Software Mentions: 1
Published: almost 9 years ago

10.1093/bioinformatics/btz033

Improved indel detection in DNA and RNA via realignment with ABRA2
Cited by: 45
Author(s): Lisle E. Mose, Charles M. Perou, Joel S. Parker
Software Mentions: 1
Published: almost 6 years ago

10.1007/s10439-020-02703-w

Ranking and Rating Bicycle Helmet Safety Performance in Oblique Impacts Using Eight Different Brain Injury Models
Cited by: 58
Author(s): Madelen Fahlstedt, Fady F. Abayazid, Matthew B. Panzer, Antonia Trotta, Wei Zhao, Mazdak Ghajari, Michael D. Gilchrist, Songbai Ji, Svein Kleiven, Xiaogai Li, Aisling Ní Annaidh, Peter Halldin
Software Mentions: 1
Published: almost 4 years ago

10.3390/bioengineering7020062

An Uncertainty Modeling Framework for Intracardiac Electrogram Analysis
Cited by: 1
Author(s): Amirhossein Koneshloo, Dongping Du, Yuncheng Du
Software Mentions: 1
Published: over 4 years ago

10.3762/bjnano.7.198

From iron coordination compounds to metal oxide nanoparticles
Cited by: 13
Author(s): Mihail Iacob, Carmen Racleş, Codrin Tugui, George Stiubianu, Adrian Bele, Liviu Sãcãrescu, Daniel Ţîmpu, Maria Cazacu
Software Mentions: 1
Published: almost 8 years ago

10.1007/s00395-020-00828-6

Functional investigation of the coronary artery disease gene SVEP1
Cited by: 20
Author(s): Michael J. Winkler, Philipp Müller, Amin M. Sharifi, Jana Wobst, Hanna Winter, Michal Mokrý, Lijiang Ma, Sander W. van der Laan, Shichao Pang, Benedikt Miritsch, Julia Hinterdobler, Julia Werner, Barbara Stiller, Ulrich Güldener, Tom R. Webb, Folkert W. Asselbergs, Johan Björkegren, Lars Maegdefessel, Heribert Schunkert, Hendrik B. Sager, Thorsten Kessler
Software Mentions: 1
Published: about 4 years ago

10.1186/s41927-018-0029-4

Identifying the unmet information and support needs of women with autoimmune rheumatic diseases during pregnancy planning, pregnancy and early parenting: mixed-methods study
Cited by: 29
Author(s): Rhiannon Phillips, Bethan Pell, Aimee Grant, D. Q. Bowen, Julia Sanders, Ann M. Taylor, Adrian Edwards, Ernest Choy, Denitza Williams
Software Mentions: 1
Published: over 6 years ago

10.3390/ani10061035

Analysis of lncRNAs Expression Profiles in Hair Follicle of Hu Sheep Lambskin
Cited by: 16
Author(s): Xiaoyang Lv, Wei-Hao Chen, Wei Sun, Zahid Hussain, Shanhe Wang, Jinyu Wang
Software Mentions: 1
Published: over 4 years ago

10.1186/s13104-017-2985-y

Consideration of non-canonical splice sites improves gene prediction on the Arabidopsis thaliana Niederzenz-1 genome sequence
Cited by: 23
Author(s): Boas Pucker, Daniela Holtgräwe, Bernd Weißhaar
Software Mentions: 1
Published: almost 7 years ago

10.1186/s12889-018-6120-3

The effectiveness and cost-effectiveness of community-based lay distribution of HIV self-tests in increasing uptake of HIV testing among adults in rural Malawi and rural and peri-urban Zambia: protocol for STAR (self-testing for Africa) cluster randomized evaluations
Cited by: 24
Author(s): Melissa Neuman, Pitchaya Indravudh, Richard Chilongosi, Marc d’Elbée, Nicola Desmond, Katherine Fielding, Bernadette Hensen, Cheryl Johnson, Phillip Mkandawire, Alwyn Mwinga, Mutinta Nalubamba, Gertrude Ncube, Lot Nyirenda, Rose Nyrienda, Eveline Otte im Kampe, Miriam Taegtmeyer, Fern Terris‐Prestholt, Helen A. Weiss, Karin Hatzold, Helen Ayles, Elizabeth L. Corbett
Software Mentions: 1
Published: about 6 years ago