10.21307/jofnem-2019-052

Genome Announcement: The Draft Genomes of Two Radopholus similis populations from Costa Rica
Cited by: 5
Author(s): Catherine L. Wram, Cedar Hesse, Sulochana K. Wasala, Dana K. Howe, Amy B. Peetz, Dee R. Denver, Danny A. Humphreys-Pereira, Inga A. Zasada
Software Mentions: 1
Published: over 7 years ago

10.3389/fonc.2021.612354

Inhibition of HSP90 as a Strategy to Radiosensitize Glioblastoma: Targeting the DNA Damage Response and Beyond
Cited by: 10
Author(s): Michael Orth, Valérie Albrecht, Karin Seidl, Linda Kinzel, Kristian Unger, Julia Heß, Lisa Kreutzer, Na Sun, Benjamin Stegen, Alexander Nieto, Jessica Maas, Nicolas Winssinger, Anna A. Friedl, Axel Walch, Claus Belka, Horst Zitzelsberger, Maximilian Niyazi, Kirsten Lauber
Software Mentions: 1
Published: over 5 years ago

10.3389/fonc.2020.632187

A-to-I RNA Editing in Cancer: From Evaluating the Editing Level to Exploring the Editing Effects
Cited by: 14
Author(s): Heming Wang, Sinuo Chen, Jiayi Wei, Guangqi Song, Yicheng Zhao
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-018-23749-w

De novo draft assembly of the Botrylloides leachii genome provides further insight into tunicate evolution
Cited by: 34
Author(s): Simon Blanchoud, Kim Rutherford, Lisa Zondag, Neil J. Gemmell, Megan J. Wilson
Software Mentions: 1
Published: over 8 years ago

10.3389/fonc.2020.00982

RNA-Seq Profiling of Serum Exosomal Circular RNAs Reveals Circ-PNN as a Potential Biomarker for Human Colorectal Cancer
Cited by: 67
Author(s): Yan Xie, Juan Li, Peilong Li, Ning Li, Ying Zhang, Helen Binang, Yinghui Zhao, Weili Duan, Yingjie Chen, Yunshan Wang, Du Li, Chuanxin Wang
Software Mentions: 1
Published: over 6 years ago

10.1038/bcj.2017.94

High somatic mutation and neoantigen burden are correlated with decreased progression-free survival in multiple myeloma
Cited by: 121
Author(s): Amber C. Miller, Yan W. Asmann, Laura Cattaneo, Esteban Braggio, Jonathan J. Keats, Daniel Auclair, Sagar Lonial, Stephen J. Russell, A. Keith Stewart
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0177340

Metagenomic sequencing complements routine diagnostics in identifying viral pathogens in lung transplant recipients with unknown etiology of respiratory infection
Cited by: 52
Author(s): Dagmara W. Lewandowska, Peter W. Schreiber, Macé M. Schuurmans, Bettina Ruehe, Osvaldo Zagordi, Cornelia Bayard, Michael Greiner, Fabienne D. Geissberger, Riccarda Capaul, Andrea Zbinden, Jürg Böni, Christian Benden, Nicolas J. Mueller, Alexandra Trkola, Michael Huber
Software Mentions: 1
Published: over 9 years ago

10.3390/ijms21176096

DEAD-Box Helicase 4 (Ddx4)+ Stem Cells Sustain Tumor Progression in Non-Serous Ovarian Cancers
Cited by: 2
Author(s): Stella D’Oronzo, Erica Silvestris, Domenica Lovero, Paola Cafforio, Loren Duda, Gennaro Cormio, Angelo Paradiso, Raffaele Palmirotta, Franco Silvestris
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-018-24298-y

Accurate identification of RNA editing sites from primitive sequence with deep neural networks
Cited by: 12
Author(s): Zhangyi Ouyang, Feng Liu, Chenghui Zhao, Chao Ren, Gaole An, Chuan Mei, Xiaochen Bo, Wenjie Shu
Software Mentions: 1
Published: over 8 years ago

10.1186/s12984-020-00790-3

A comprehensive scheme for the objective upper body assessments of subjects with cerebellar ataxia
Cited by: 11
Author(s): Ha Manh Tran, Khoa D. Nguyen, Pubudu N. Pathirana, Malcolm Horne, Laura Power, David J. Szmulewicz
Software Mentions: 1
Published: almost 6 years ago

10.3390/ijms21176314

Targeting Adaptive IRE1α Signaling and PLK2 in Multiple Myeloma: Possible Anti-Tumor Mechanisms of KIRA8 and Nilotinib
Cited by: 7
Author(s): Yusuke Yamashita, Shuhei Morita, Hiroki Hosoi, Hirotsugu Kobata, Shohei Kishimoto, Tatsuya Ishibashi, Hiroyuki Mishima, Akira Kinoshita, Bradley J. Backes, Koh-ichiro Yoshiura, Feroz R. Papa, Takashi Sawada, Shinobu Tamura
Software Mentions: 1
Published: about 6 years ago

10.1186/s12859-019-3234-2

deltaRpkm: an R package for a rapid detection of differential gene presence between related bacterial genomes
Cited by: 2
Author(s): Hatice Akarsu, Lisandra Aguilar-Bultet, Laurent Falquet
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0184365

Characterization of the microDNA through the response to chemotherapeutics in lymphoblastoid cell lines
Cited by: 30
Author(s): Pamela Mehanna, Vincent Gagné, Mathieu Lajoie, Jean-François Spinella, Pascal St-Onge, Daniel Sinnett, Ivan Brukner, Maja Krajinović
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0221109

Antibiotic treatment of Chlamydia-induced cystitis in the koala is linked to expression of key inflammatory genes in reactive oxygen pathways
Cited by: 5
Author(s): Samuel Phillips, Bonnie Chaban, Ammar Aziz, Wendy Bergen, Rosemary Booth, Michael Pyne, Peter Timms
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pgen.1008460

A missense mutation in SNRPE linked to non-syndromal microcephaly interferes with U snRNP assembly and pre-mRNA splicing
Cited by: 17
Author(s): Tao Chen, Bin Zhang, Thomas Ziegenhals, Archana Bairavasundaram Prusty, Sebastian Fröhler, Clemens Grimm, Yuhui Hu, Bernhard Schaefke, Liang Fang, Min Zhang, Nadine Kraemer, Angela M. Kaindl, Utz Fischer, Wei Chen
Software Mentions: 1
Published: almost 7 years ago

10.1186/s12974-020-01842-0

Stress-induced NLRP3 inflammasome activation negatively regulates fear memory in mice
Cited by: 56
Author(s): Yuan Dong, Shuoshuo Li, Yiming Lu, Xiaoheng Li, Yuhe Liao, Zhixin Peng, Yunfeng Li, Lin Hou, Zengqiang Yuan, Jinbo Cheng
Software Mentions: 1
Published: about 6 years ago

10.18632/aging.202296

Mutation in histone deacetylase HDA-3 leads to shortened locomotor healthspan in Caenorhabditis elegans
Cited by: 4
Author(s): Kazuto Kawamura, Ichiro Maruyama
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-020-70546-5

Seasonal effects on miRNA and transcriptomic profile of oocytes and follicular cells in buffalo (Bubalus bubalis)
Cited by: 9
Author(s): Emanuele Capra, Barbara Lazzari, Marco Russo, Michal Andrzej Kosior, Giovanni Della Valle, V. Longobardi, Alessandra Stella, A. Lange Consiglio, B. Gasparrini
Software Mentions: 1
Published: about 6 years ago

10.3389/fphar.2021.629513

Xiao-Yin-Fang Therapy Alleviates Psoriasis-like Skin Inflammation Through Suppressing γδT17 Cell Polarization
Cited by: 6
Author(s): Xilin Zhang, Xiaorui Li, Youdong Chen, Bingjie Li, Chunyuan Guo, Peng Xu, Zengyang Yu, Yangfeng Ding, Yujun Shi, Jun Gu
Software Mentions: 1
Published: over 5 years ago

10.3389/fphar.2020.00983

The Delivery of α1-Antitrypsin Therapy Through Transepidermal Route: Worthwhile to Explore
Cited by: 8
Author(s): Srinu Tumpara, Beatriz Martı́nez-Delgado, Gema Gómez-Mariano, Bin Liu, David S. DeLuca, Elena Korenbaum, Danny Jonigk, Frank K. Jugert, Florian M. Wurm, Tobias Welte, Sabina Janciauskiene
Software Mentions: 1
Published: about 6 years ago

10.3389/fphar.2020.615287

Prospective: Evolution of Chinese Medicine to Treat COVID-19 Patients in China
Cited by: 10
Author(s): Jieya Wu, Baoguo Sun, Li Hou, Fulan Guan, Liyuan Wang, Peikwen Cheng, Sophia Scobell, Yung‐Chi Cheng, Wing Lam
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0213177

Drosophila melanogaster tPlus3a and tPlus3b ensure full male fertility by regulating transcription of Y-chromosomal, seminal fluid, and heat shock genes
Cited by: 2
Author(s): Tim Hundertmark, Sabrina Kreutz, Nastasja Merle, Andrea Nist, Boris Lamp, Thorsten Stiewe, Alexander Brehm, Renate Renkawitz‐Pohl, Christina Rathke
Software Mentions: 1
Published: over 7 years ago

10.1080/19768354.2018.1512522

Comparison of long noncoding RNA between muscles and adipose tissues in <i>Hanwoo</i> beef cattle
Cited by: 9
Author(s): Jae-Ho Choi, Donghyun Shin, Hyun-Jeong Lee, Jae-Don Oh
Software Mentions: 1
Published: over 7 years ago

10.3389/fphys.2018.00522

Long Non-coding RNAs in Endothelial Biology
Cited by: 20
Author(s): Tyler Weirick, Giuseppe Militello, Shizuka Uchida
Software Mentions: 1
Published: over 8 years ago

10.3389/fphys.2020.01010

Expression Profiles of CircRNA and mRNA in Lacrimal Glands of AQP5–/– Mice With Primary Dry Eye
Cited by: 16
Author(s): Yaning Liu, Guohu Di, Shaohua Hu, Tianyu Zhao, Xinkai Xu, Xiaoyi Wang, Peng Chen
Software Mentions: 1
Published: about 6 years ago

10.3389/fphys.2020.575722

The Study of Angptl4-Modulated Podocyte Injury in IgA Nephropathy
Cited by: 3
Author(s): Jingquan Sha, Xing Peng, Ludan Liang, Ying Zhang, Meng Li, Qin Zhou, Xiaohua Shen, Yucheng Wang, Cuili Wang, Shi Feng, Jianghua Chen, Pingping Ren, Hong Jiang
Software Mentions: 1
Published: over 5 years ago

10.3389/fphys.2018.00817

Age-Related Differential Structural and Transcriptomic Responses in the Hypertensive Heart
Cited by: 6
Author(s): Francine Z. Marques, Po‐Yin Chu, Mark Ziemann, Antony Kaspi, Helen Kiriazis, Xiao Jun Du, Assam El‐Osta, David M. Kaye
Software Mentions: 1
Published: about 8 years ago

10.1038/s41598-020-70529-6

The P-glycoprotein repertoire of the equine parasitic nematode Parascaris univalens
Cited by: 13
Author(s): Alexander P. Gerhard, Jürgen Krücken, Emanuel Heitlinger, I. Jana I. Janssen, Marta Basiaga, Sławomir Kornaś, Céline Beier, Martin K. Nielsen, Richard E. Davis, Jianbin Wang, Georg von Samson‐Himmelstjerna
Software Mentions: 1
Published: about 6 years ago

10.1186/s13068-015-0391-z

Transcriptional program for nitrogen starvation-induced lipid accumulation in Chlamydomonas reinhardtii
Cited by: 53
Author(s): Adrián López García de Lomana, Sascha Schäuble, Jacob J. Valenzuela, Saheed Imam, Warren Carter, Damla D. Bilgin, Christopher B. Yohn, Serdar Turkarslan, David J Reiss, Mónica V. Orellana, Nathan D. Price, Nitin S. Baliga
Software Mentions: 1
Published: almost 11 years ago

10.1007/s12035-019-01681-y

Age and Sex Influence the Hippocampal Response and Recovery Following Sepsis
Cited by: 29
Author(s): Jolie Barter, Ashok Kumar, Julie A. Stortz, McKenzie K. Hollen, Dina C. Nacionales, Philip A. Efron, Lyle L. Moldawer, Thomas C. Foster
Software Mentions: 1
Published: about 7 years ago

10.3389/fphys.2018.01426

Twist1-Haploinsufficiency Selectively Enhances the Osteoskeletal Capacity of Mesoderm-Derived Parietal Bone Through Downregulation of Fgf23
Cited by: 9
Author(s): Natalina Quarto, Siny Shailendra, Nathaniel P. Meyer, Siddharth Menon, Andrea Renda, Michael T. Longaker
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0078586

Rapid Kill—Novel Endodontic Sealer and Enterococcus faecalis
Cited by: 27
Author(s): Nurit Beyth, Dana Kesler Shvero, Nathan Zaltsman, Yael Houri‐Haddad, Itzhak Abramovitz, Michael Perez Davidi, Ervin I. Weiss
Software Mentions: 1
Published: almost 13 years ago

10.3390/ijms21197079

Alternative Splicing Regulation of an Alzheimer’s Risk Variant in CLU
Cited by: 10
Author(s): Seonggyun Han, Kwangsik Nho, Younghee Lee
Software Mentions: 1
Published: almost 6 years ago

10.1161/ATVBAHA.118.312190

Intussusceptive Vascular Remodeling Precedes Pathological Neovascularization
Cited by: 19
Author(s): Zaheer Ali, Anthony Mukwaya, Antje Biesemeier, Maria Ntzouni, Daniel Ramsköld, Sarantis Giatrellis, Parviz Mammadzada, Renhai Cao, Anton Lennikov, Michele Marass, Claudia Gerri, Camilla Hildesjö, Michael R. Taylor, Qiaolin Deng, Beatrice Bourghardt Peebo, Luis del Peso, Anders Kvanta, Rickard Sandberg, Ulrich Schraermeyer, Helder André, John F. Steffensen, Neil Lagali, Yihai Cao, Julianna Kele, Lasse D. Jensen
Software Mentions: 1
Published: about 7 years ago

10.3389/fphys.2018.00597

Characterization of an Atypical Metalloproteinase Inhibitors Like Protein (Sbp8-1) From Scallop Byssus
Cited by: 9
Author(s): Xiaokang Zhang, Xiaoting Dai, Lulu Wang, Yanqing Miao, Pingping Xu, Pengyu Liang, Bo Dong, Zhenmin Bao, Shi Wang, Qianqian Lyu, Weizhi Liu
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0129183

Weighted Statistical Binning: Enabling Statistically Consistent Genome-Scale Phylogenetic Analyses
Cited by: 104
Author(s): Shamsuzzoha Bayzid, Siavash Mirarab, Bastien Boussau, Tandy Warnow
Software Mentions: 1
Published: over 11 years ago

10.1038/s41598-020-70977-0

The proanthocyanin-related transcription factors MYBC1 and WRKY44 regulate branch points in the kiwifruit anthocyanin pathway
Cited by: 41
Author(s): Yongyan Peng, Amali H. Thrimawithana, Janine M. Cooney, Dwayne J. Jensen, Richard V. Espley, Andrew C. Allan
Software Mentions: 1
Published: about 6 years ago

10.1186/s12864-021-07748-2

Transcriptomic analysis of caecal tissue in inbred chicken lines that exhibit heritable differences in resistance to Campylobacter jejuni
Cited by: 6
Author(s): Kay Russell, Jacqueline Smith, Abi Bremner, Cosmin Chintoan-Uta, Lonneke Vervelde, Androniki Psifidi, Mark P. Stevens
Software Mentions: 1
Published: over 5 years ago

10.3389/fphys.2020.01003

Possible Assessment of Calf Venous Pump Efficiency by Computational Fluid Dynamics Approach
Cited by: 2
Author(s): Gianni Niccolini, A. Manuello, Antonio Capone, Giuseppe Marongiu, A Dell'Osa, Andrea Fois, Fernanda Velluzzi, Alberto Concu
Software Mentions: 1
Published: about 6 years ago

10.1007/s00401-020-02167-1

An optimized workflow to improve reliability of detection of KIAA1549:BRAF fusions from RNA sequencing data
Cited by: 5
Author(s): Alexander C. Sommerkamp, Sebastian Uhrig, Damian Stichel, Pascal St-Onge, Pengbo Sun, Natalie Jäger, Andreas von Deimling, Felix Sahm, Stefan M. Pfister, Andrey Korshunov, Daniel Sinnett, Nada Jabado, Annika K. Wefers, David Jones
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-020-71298-y

Oncogenes overexpressed in metastatic oral cancers from patients with pain: potential pain mediators released in exosomes
Cited by: 16
Author(s): Aditi Bhattacharya, Malvin N. Janal, Ratna Veeramachaneni, Igor Dolgalev, Zinaida A. Dubeykovskaya, Nguyen Huu Tu, Hyesung Kim, Susanna Zhang, Angie K. Wu, Mari Hagiwara, Alexander Ross Kerr, Mark D. DeLacure, Brian L. Schmidt, Donna G. Albertson
Software Mentions: 1
Published: about 6 years ago

10.1002/bit.27767

Rapid optimization of processes for the integrated purification of biopharmaceuticals
Cited by: 4
Author(s): Laura E. Crowell, S. Rodríguez, Kerry R. Love, Steven M. Cramer, J. Christopher Love
Software Mentions: 1
Published: over 5 years ago

10.3389/fphys.2015.00274

RNA-seq analysis of glycosylation related gene expression in STZ-induced diabetic rat kidney inner medulla
Cited by: 15
Author(s): Xiaoqian Qian, Xuechen Li, Titilayo O. Ilori, Janet D. Klein, Rebecca P. Hughey, Congjun Li, Abdel A. Alli, Zhengyu Guo, Peng Yu, Xiang Song, Guangping Chen
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0141214

Identification and Characterization of Circular RNAs As a New Class of Putative Biomarkers in Human Blood
Cited by: 503
Author(s): Sebastian Memczak, Panagiotis Papavasileiou, Oliver Peters, Nikolaus Rajewsky
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0174436

Computational identifying and characterizing circular RNAs and their associated genes in hepatocellular carcinoma
Cited by: 16
Author(s): Yan Li, Yongcheng Dong, Ziyan Huang, Qifan Kuang, Yiming Wu, Yizhou Li, Menglong Li
Software Mentions: 1
Published: over 9 years ago

10.3389/fphys.2017.00849

Members of Bitter Taste Receptor Cluster Tas2r143/Tas2r135/Tas2r126 Are Expressed in the Epithelium of Murine Airways and Other Non-gustatory Tissues
Cited by: 30
Author(s): Shuya Liu, Shun Lu, Rui Xu, Ann Atzberger, Stefan Günther, Nina Wettschureck, Stefan Offermanns
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0100153

The Relationship between Therapeutic Alliance and Service User Satisfaction in Mental Health Inpatient Wards and Crisis House Alternatives: A Cross-Sectional Study
Cited by: 62
Author(s): Angela Sweeney, Sarah Fahmy, Fiona Nolan, Nicola Morant, Zoë Fox, Brynmor Lloyd‐Evans, David Osborn, Emma Burgess, Helen Gilburt, Rose McCabe, Mike Slade, Sonia Johnson
Software Mentions: 1
Published: about 12 years ago

10.3389/fphys.2020.00605

Sedentary and Trained Older Men Have Distinct Circulating Exosomal microRNA Profiles at Baseline and in Response to Acute Exercise
Cited by: 46
Author(s): Venugopalan D. Nair, Yongchao Ge, SiDe Li, Hanna Pinças, Nimisha Jain, Nitish Seenarine, Mary Anne S Amper, Bret H. Goodpaster, Martin J. Walsh, Paul M. Coen, Stuart C. Sealfon
Software Mentions: 1
Published: over 6 years ago

10.1111/cmi.13156

Blind killing of both male and female Drosophila embryos by a natural variant of the endosymbiotic bacterium Spiroplasma poulsonii
Cited by: 8
Author(s): Florent Masson, Sandra P. Calderon-Copete, Fanny Schüpfer, Aurélien Vigneron, Samuel Rommelaere, Mario Gonzalo Garcia-Arraez, Juan C. Paredes, Bruno Lemaître
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0152405

Subtype-Selective Small Molecule Inhibitors Reveal a Fundamental Role for Nav1.7 in Nociceptor Electrogenesis, Axonal Conduction and Presynaptic Release
Cited by: 144
Author(s): Aristos J. Alexandrou, Adam R. Brown, Mark L. Chapman, Mark Estacion, Jamie Turner, Malgorzata A. Mis, Anna Wilbrey, Elizabeth C. Payne, Alex Gutteridge, Peter Cox, Rachel Doyle, David Printzenhoff, Zhixin Lin, Brian E. Marron, Christopher W. West, Nigel A. Swain, Richard Storer, Paul A. Stupple, Neil A. Castle, James A. Hounshell, Mirko Rivara, Andrew D. Randall, Sulayman D. Dib‐Hajj, Douglas S. Krafte, Stephen G. Waxman, Manoj K. Patel, Richard P. Butt, Edward B. Stevens
Software Mentions: 1
Published: over 10 years ago

10.3390/cells9081806

In-Depth Analysis Reveals Production of Circular RNAs from Non-Coding Sequences
Cited by: 16
Author(s): Annie Robic, Julie Demars, Christa Kühn
Software Mentions: 1
Published: about 6 years ago

10.1186/1471-2105-8-125

Detecting microsatellites within genomes: significant variation among algorithms
Cited by: 79
Author(s): Sébastien Leclercq, Éric Rivals, Philippe Jarne
Software Mentions: 1
Published: over 19 years ago

10.3389/fpls.2021.602052

Bio-Organic Fertilizer: A Green Technology to Reduce Synthetic N and P Fertilizer for Rice Production
Cited by: 19
Author(s): Umme Aminun Naher, Jatish Chandra Biswas, Md. Maniruzzaman, Faruk Hossain Khan, Md. Imran Ullah Sarkar, Afsana Jahan, Md. Hasibur Rahaman Hera, Md. Belal Hossain, A. K. M. Saiful Islam, Md. Rafiqul Islam, Md. Shahjahan Kabir
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms21207466

The BDNF rs6265 Polymorphism is a Modifier of Cardiomyocyte Contractility and Dilated Cardiomyopathy
Cited by: 5
Author(s): F Raucci, Anand Prakash Singh, Jonathan H. Soslow, Larry W. Markham, Lin Zhong, Wejdan Aljafar, Natasja Lessiohadi, Cassandra P. Awgulewitsch, Prachi Umbarkar, Qinkun Zhang, Presley L. Cannon, Maciej S. Buchowski, Joseph T. Roland, Erica J. Carrier, W. Bryan Burnette, Antonis K. Hatzopoulos, Hind Lal, Cristi L. Galindo
Software Mentions: 1
Published: almost 6 years ago

10.3389/fpls.2019.00953

Waterlogging Tolerance at Germination in Field Pea: Variability, Genetic Control, and Indirect Selection
Cited by: 13
Author(s): Samina Zaman, Al Imran Malik, Parwinder Kaur, Federico M. Ribalta, William Erskine
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pone.0195142

Surprisal analysis of genome-wide transcript profiling identifies differentially expressed genes and pathways associated with four growth conditions in the microalga Chlamydomonas
Cited by: 6
Author(s): Kenny A. Bogaert, Sheeba Santhini Manoharan-Basil, Emilie Perez, R. D. Levine, Françoise Remacle, Claire Remacle
Software Mentions: 1
Published: over 8 years ago

10.1186/s13041-021-00794-7

Atg7 deficiency in microglia drives an altered transcriptomic profile associated with an impaired neuroinflammatory response
Cited by: 6
Author(s): Lara Frieß, Mathilde Cheray, Lily Keane, Kathleen Grabert, Bertrand Joseph
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pgen.1007206

Deep sequencing of HBV pre-S region reveals high heterogeneity of HBV genotypes and associations of word pattern frequencies with HCC
Cited by: 7
Author(s): Xin Bai, Ji An An Jia, Meng Fang, Shipeng Chen, Xiaotao Liang, Shanfeng Zhu, Shuqin Zhang, Jianfeng Feng, Fengzhu Sun, Chunfang Gao
Software Mentions: 1
Published: over 8 years ago

10.1080/22221751.2021.1943537

Naturally circulating pertactin-deficient <i>Bordetella pertussis</i> strains induce distinct gene expression and inflammatory signatures in human dendritic cells
Cited by: 5
Author(s): Michiel Kroes, Alberto Miranda Bedate, Elise S. Hovingh, Ronald Jacobi, Corrie S. Schot, Elder Pupo, René H. M. Raeven, Arno A. J. van der Ark, Jos P. M. van Putten, Jelle de Wit, Rob Mariman, Elena Pinelli
Software Mentions: 1
Published: over 5 years ago

10.3389/fpls.2017.00536

SNP Discovery and Genetic Variation of Candidate Genes Relevant to Heat Tolerance and Agronomic Traits in Natural Populations of Sand Rice (Agriophyllum squarrosum)
Cited by: 17
Author(s): Pengshan Zhao, Jiwei Zhang, Qian Chen, Qin Zhou, Xinquan Zhao, Guoxiong Chen, Xiaofei Ma
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-020-73787-6

Assessment of long non-coding RNA expression reveals novel mediators of the lung tumour immune response
Cited by: 16
Author(s): Adam P. Sage, Kevin W. Ng, Erin A. Marshall, Greg L. Stewart, Brenda C. Minatel, Katey S.S. Enfield, Spencer D. Martin, Carolyn J. Brown, Ninan Abraham, Wan L. Lam
Software Mentions: 1
Published: almost 6 years ago

10.3390/jpm10020040

The CFTR Mutation c.3453G &gt; C (D1152H) Confers an Anion Selectivity Defect in Primary Airway Tissue that Can be Rescued by Ivacaftor
Cited by: 21
Author(s): Onofrio Laselva, Theo J. Moraes, Gengming He, Claire Bartlett, Ida Szàrics, Hong Ouyang, Tarini Gunawardena, Lisa J. Strug, Christine E. Bear, Tanja Gonska
Software Mentions: 1
Published: over 6 years ago

10.3390/biom11081171

Characterization of the Skeletal Muscle Secretome Reveals a Role for Extracellular Vesicles and IL1α/IL1β in Restricting Fibro/Adipogenic Progenitor Adipogenesis
Cited by: 10
Author(s): Simone Vumbaca, Giulio Giuliani, Valeria Fiorentini, Flavia Tortolici, Andrea Cerquone Perpetuini, Federica Riccio, Simona Sennato, Cesare Gargioli, Claudia Fuoco, Luisa Castagnoli, Gianni Cesareni
Software Mentions: 1
Published: about 5 years ago

10.3390/biom11081182

Design and Evaluation of Synthetic RNA-Based Incoherent Feed-Forward Loop Circuits
Cited by: 7
Author(s): Seongho Hong, Dohyun Jeong, Jordan Ryan, Mathias Foo, Xiangdong Tang, Jongmin Kim
Software Mentions: 1
Published: about 5 years ago

10.1186/s40478-020-00951-4

Fusions involving BCOR and CREBBP are rare events in infiltrating glioma
Cited by: 11
Author(s): David Pisapia, Kentaro Ohara, Rohan Bareja, David Wilkes, Erika Hissong, Jaclyn A. Croyle, Joon‐Hyung Kim, Jad Saab, Theresa Y. MacDonald, Shaham Beg, Catherine O’Reilly, Sarah Kudman, Mark A. Rubin, Olivier Elemento, Andrea Sboner, Jeffrey P. Greenfield, Juan Miguel Mosquera
Software Mentions: 1
Published: over 6 years ago

10.3389/fpls.2021.697556

Transcriptome Analysis of Melocactus glaucescens (Cactaceae) Reveals Metabolic Changes During in vitro Shoot Organogenesis Induction
Cited by: 1
Author(s): Gabriela Torres-Silva, Ludmila Nayara Freitas Correia, Diego Silva Batista, Andréa Dias Koehler, Sheila Vitória Resende, Elisson Romanel, Daniela Cassol, Ana Maria Rocha de Almeida, Susan R. Strickler, Chelsea D. Specht, Wagner Campos Otoni
Software Mentions: 1
Published: about 5 years ago

10.3389/fpls.2020.611140

Integrated Metabolome and Transcriptome Analyses Reveal Etiolation-Induced Metabolic Changes Leading to High Amino Acid Contents in a Light-Sensitive Japanese Albino Tea Cultivar
Cited by: 17
Author(s): Hiroto Yamashita, Yuka Kambe, Megumi Ohshio, Aya Kunihiro, Yasuno Tanaka, Toshikazu Suzuki, Yoriyuki Nakamura, Akio Morita, Takashi Ikka
Software Mentions: 1
Published: over 5 years ago

10.3389/fpls.2020.00935

What Matters for C4 Transporters: Evolutionary Changes of Phosphoenolpyruvate Transporter for C4 Photosynthesis
Cited by: 4
Author(s): Ming‐Ju Amy Lyu, Yaling Wang, Jingchao Jiang, Xinyu Liu, Genyun Chen, Xin Guang Zhu
Software Mentions: 1
Published: about 6 years ago

10.3390/ijms21218322

LINC00973 Induces Proliferation Arrest of Drug-Treated Cancer Cells by Preventing p21 Degradation
Cited by: 4
Author(s): Dmitry S. Karpov, Pavel Spirin, Andrei O. Zheltukhin, Vera V. Tutyaeva, Olga L. Zinovieva, E. N. Grineva, Vera A. Matrosova, George S. Krasnov, Anastasiya V. Snezhkina, Anna V. Kudryavtseva, Vladimir Prassolov, T. D. Mashkova, Н. А. Лисицын
Software Mentions: 1
Published: almost 6 years ago

10.3389/fpls.2016.01759

Small RNAs from Bemisia tabaci Are Transferred to Solanum lycopersicum Phloem during Feeding
Cited by: 11
Author(s): Paula J. M. van Kleeff, Marc Galland, Robert C. Schuurink, Petra Bleeker
Software Mentions: 1
Published: almost 10 years ago

10.3390/biom9120785

LCAT, ApoD, and ApoA1 Expression and Review of Cholesterol Deposition in the Cornea
Cited by: 19
Author(s): Rhonda Flores, Xueting Jin, Joan Chang, Connie Zhang, David G. Cogan, Ernst J. Schaefer, Howard S. Kruth
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0179567

A sorghum (Sorghum bicolor) mutant with altered carbon isotope ratio
Cited by: 4
Author(s): Govinda Rizal, Shanta Karki, Vivek Thakur, Samart Wanchana, Hugo Alonso-Cantabrana, Jacque Dionora, J. E. Sheehy, Robert T. Furbank, Susanne von Caemmerer, W. Paul Quick
Software Mentions: 1
Published: about 9 years ago

10.5713/ajas.19.0874

Effect of JAK-STAT pathway in regulation of fatty liver hemorrhagic syndrome in chickens
Cited by: 9
Author(s): Yuanjun Zhu, Huirong Mao, Gang Peng, Qiaoying Zeng, Qing Wei, Jiming Ruan, Jingjing Huang
Software Mentions: 1
Published: over 5 years ago

10.3390/biomedicines9081057

The Histone Variant MacroH2A1 Impacts Circadian Gene Expression and Cell Phenotype in an In Vitro Model of Hepatocellular Carcinoma
Cited by: 2
Author(s): Annalucia Carbone, Elisabetta De Santis, Olga Cela, Vincenzo Giambra, Luca Miele, Giuseppe Marrone, Antonio Grieco, Marcus Buschbeck, Nazzareno Capitanio, Tommaso Mazza, Gianluigi Mazzoccoli
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-020-75048-y

Physiological demands and signaling associated with snake venom production and storage illustrated by transcriptional analyses of venom glands
Cited by: 10
Author(s): Blair W. Perry, Drew R. Schield, Aundrea K. Westfall, Stephen P. Mackessy, Todd A. Castoe
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12864-021-07757-1

SnoRNA copy regulation affects family size, genomic location and family abundance levels
Cited by: 11
Author(s): David Μ. Bergeron, Cédric Laforest, Stacey Carpentier, Annabelle Calvé, Étienne Fafard-Couture, Gabrielle Deschamps-Francoeur, Michelle S. Scott
Software Mentions: 1
Published: over 5 years ago

10.3390/biomedicines8120590

Authentication of Primary Murine Cell Lines by a Microfluidics-Based Lab-On-Chip System
Cited by: 4
Author(s): Ying‐Fen Hong, Nikita Singh, Stefanos A. Bamopoulos, Enio Gjerga, Laura K. Schmalbrock, Karl Balabanian, Markus Schick, Ulrich Keller, Matthias Wirth
Software Mentions: 1
Published: almost 6 years ago

10.3389/fpls.2021.710812

Diversity in Phytochemical Composition, Antioxidant Capacities, and Nutrient Contents Among Mungbean and Lentil Microgreens When Grown at Plain-Altitude Region (Delhi) and High-Altitude Region (Leh-Ladakh), India
Cited by: 12
Author(s): Priti, Gyan P. Mishra, Harsh Kumar Dikshit, T. Vinutha, Mechiya Tomuilim Tontang, Tsering Stobdan, Sheela Sangwan, Muraleedhar S. Aski, Ajeet Singh, Ranjeet Kumar, Kuldeep Tripathi, Shiv Kumar, Ramakrishnan M. Nair, Shelly Praveen
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pgen.1007496

Specification of Drosophila neuropeptidergic neurons by the splicing component brr2
Cited by: 3
Author(s): Ignacio Monedero Cobeta, Caroline Bivik Stadler, Li Jin, Peng Yu, Stefan Thor, Jonathan Benito‐Sipos
Software Mentions: 1
Published: about 8 years ago

10.1002/1878-0261.12914

Epigenetic regulator BMI1 promotes alveolar rhabdomyosarcoma proliferation and constitutes a novel therapeutic target
Cited by: 10
Author(s): Cara E. Shields, Sindhu Potlapalli, Selma M. Cuya-Smith, Sarah K. Chappell, Dongdong Chen, Daniel Martı́nez, Jennifer Pogoriler, Komal S. Rathi, Shiv Patel, Kristianne M. Oristian, Corinne M. Linardic, John M. Maris, Karmella A. Haynes, Robert W. Schnepp
Software Mentions: 1
Published: over 5 years ago

10.1186/s12864-016-3098-z

Anchoring quartet-based phylogenetic distances and applications to species tree reconstruction
Cited by: 24
Author(s): Erfan Sayyari, Siavash Mirarab
Software Mentions: 1
Published: almost 10 years ago

10.3390/molecules24183217

Moringin Pretreatment Inhibits the Expression of Genes Involved in Mitophagy in the Stem Cell of the Human Periodontal Ligament
Cited by: 16
Author(s): Luigi Chiricosta, Agnese Gugliandolo, Francesca Diomede, Jacopo Pizzicannella, Oriana Trubiani, Renato Iori, Giuseppe Tardiolo, Simone Guarnieri, Placido Bramantı, Emanuela Mazzon
Software Mentions: 1
Published: about 7 years ago

10.3389/fpls.2020.00427

Comparative Analysis of Chitin SynthaseA dsRNA Mediated RNA Interference for Management of Crop Pests of Different Families of Lepidoptera
Cited by: 22
Author(s): Seema Rana, Ashish B. Rajurkar, K. K. Kumar, S. Mohankumar
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0236882

Mutations in m6A consensus motifs are suppressed in the m6A modified genes in human cancer cells
Cited by: 3
Author(s): Mingzi An, Wang Hui-yun, Yingqian Zhu
Software Mentions: 1
Published: about 6 years ago

10.3389/fpls.2020.00612

Identification of α-Amyrin 28-Carboxylase and Glycosyltransferase From Ilex asprella and Production of Ursolic Acid 28-O-β-D-Glucopyranoside in Engineered Yeast
Cited by: 4
Author(s): Xiaoyu Ji, Shumin Lin, Yuanyuan Chen, Jiawei Liu, Xiaoyun Yun, Tiancheng Wang, Jialiang Qin, Chaoquan Luo, Kui Wang, Zhongxiang Zhao, Ruoting Zhan, Hui Xu
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-020-75102-9

Umbilical cord tissue is a robust source for mesenchymal stem cells with enhanced myogenic differentiation potential compared to cord blood
Cited by: 14
Author(s): Sanjay Mishra, Jayesh Kumar Sevak, Anamica Das, Aneeshkumar G. Arimbasseri, Shinjini Bhatnagar, Suchitra D. Gopinath
Software Mentions: 1
Published: almost 6 years ago

10.1186/1471-2164-15-1089

RETRACTED ARTICLE: Species-specific chemosensory gene expression in the olfactory organs of the malaria vector Anopheles gambiae
Cited by: 15
Author(s): Theresa K Hodges, Luciano V. Cosme, Giridhar Athrey, Sharmila Pathikonda, Willem Takken, Michel A. Slotman
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pgen.1007587

Transcription factor ASCL2 is required for development of the glycogen trophoblast cell lineage
Cited by: 19
Author(s): Aaron B. Bogutz, Rosemary Oh-McGinnis, Karen J. Jacob, Rita Ho-Lau, Ting Gu, Marina Gertsenstein, András Nagy, Louis Lefebvre
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0134958

A Biochemical Approach to Understand the Pathogenesis of Advanced Pulmonary Arterial Hypertension: Metabolomic Profiles of Arginine, Sphingosine-1-Phosphate, and Heme of Human Lung
Cited by: 38
Author(s): Yidan Zhao, Lei Chu, Kathleen Watson Lin, Elise Granton, Li Yin, Jiming Peng, Michael Hsin, Licun Wu, Amy Yu, Thomas K. Waddell, Shaf Keshavjee, John Granton, Marc de Perrot
Software Mentions: 1
Published: about 11 years ago

10.3390/ijms21228785

Human Thymic CD10+ PD-1+ Intraepithelial Lymphocyte Precursors Acquire Interleukin-15 Responsiveness at the CD1a– CD95+ CD28– CCR7– Developmental Stage
Cited by: 7
Author(s): Lore Billiet, Glenn Goetgeluk, Sarah Bonte, Stijn De Munter, Laurenz De Cock, Melissa Pille, Joline Ingels, Hanne Jansen, Karin Weening, Filip Van Nieuwerburgh, Tessa Kerre, Tom Taghon, Georges Leclercq, Bart Vandekerckhove
Software Mentions: 1
Published: almost 6 years ago

10.1155/2018/7082095

Stay-Green QTLs Response in Adaptation to Post-Flowering Drought Depends on the Drought Severity
Cited by: 8
Author(s): Nasrein Mohamed Kamal, Yasir Serag Alnor Gorafi, Hisashi Tsujimoto, Abdelbagi Mukhtar Ali Ghanim
Software Mentions: 1
Published: almost 8 years ago

10.1155/2013/719570

Low Circulating Protein C Levels Are Associated with Lower Leg Ulcers in Patients with Diabetes
Cited by: 12
Author(s): Kaley Whitmont, Greg Fulcher, Ian A. Reid, Meilang Xue, Kelly McKelvey, Yuanliang Xie, Margaret Aboud, Christina Ward, Michael Smith, Alan Cooper, Lyn March, Chris Jackson
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0122420

High Resolution Mapping of Enhancer-Promoter Interactions
Cited by: 3
Author(s): Christopher Reeder, Michael Closser, Huay Mei Poh, Kuljeet Singh Sandhu, Hynek Wichterle, David K. Gifford
Software Mentions: 1
Published: over 11 years ago

10.3390/antiox10060845

Inflammation and Oxidative Damage in Ischaemic Renal Disease
Cited by: 11
Author(s): Áine M. de Bhailís, Constantina Chrysochou, Philip A. Kalra
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0183939

Characterization of lincRNA expression in the human retinal pigment epithelium and differentiated induced pluripotent stem cells
Cited by: 11
Author(s): Elizabeth Au, Rosario Fernández-Godino, Tadeusz J. Kaczynksi, Maria E Sousa, Michael H. Farkas
Software Mentions: 1
Published: about 9 years ago

10.3390/cells10020399

Aldehyde Dehydrogenase, a Therapeutic Target in Chordoma: Analysis in 3D Cellular Models
Cited by: 4
Author(s): Marie-Anaïs Locquet, Anne-Lise Dechaume, Paul Berchard, Lhorra Abbes, Daniel Pissaloux, Franck Tirode, Inês Ramos, Julie Bedoucha, Julie Valantin, Marie Karanian, Raul Perret, Olivier Gille, Jean‐Yves Blay, Aurélie Dutour
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-020-76904-7

Transcriptomic analysis of micropapillary high grade T1 urothelial bladder cancer
Cited by: 3
Author(s): Michaela Bowden, Rosa Nadal, Chensheng W. Zhou, Lillian Werner, Justine A. Barletta, Núria Juanpere, Josep Lloreta, Silvia Hernández‐Llodrà, Juan Moróte, Inés de Torres, Anna Orsola, Paloma Cejas, Henry W. Long, Joaquim Bellmunt
Software Mentions: 1
Published: almost 6 years ago

10.1186/1475-925X-13-43

Reducing the impact of insulin sensitivity variability on glycaemic outcomes using separate stochastic models within the STAR glycaemic protocol
Cited by: 17
Author(s): Felicity Thomas, Christopher G. Pretty, Liam Fisk, Geoffrey M. Shaw, J. Geoffrey Chase, Thomas Desaive
Software Mentions: 1
Published: over 12 years ago

10.3389/fpls.2021.635990

Reproductive Proteins Evolve Faster Than Non-reproductive Proteins Among Solanum Species
Cited by: 11
Author(s): Leonie C. Moyle, Meng Wu, Matthew J. S. Gibson
Software Mentions: 1
Published: over 5 years ago

10.3389/fpls.2018.00115

A Genomic View of Alternative Splicing of Long Non-coding RNAs during Rice Seed Development Reveals Extensive Splicing and lncRNA Gene Families
Cited by: 25
Author(s): Edward Kiegle, Alex Garden, Elia Lacchini, Martin M. Kater
Software Mentions: 1
Published: over 8 years ago