cran: STAR | Projects | Ecosyste.ms: Papers

10.1038/s41598-020-77816-2

Transcriptomic analysis of tobacco-flavored E-cigarette and menthol-flavored E-cigarette exposure in the human middle ear
Cited by: 2
Author(s): Jae‐Jun Song, Yoon Young Go, Jong Kyou Lee, Bum Sang Lee, Su Kyoung Park, Harry Jung, Jun Ho Lee, Jiwon Chang
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-020-77840-2

Wide-ranging transcriptomic analysis of Poncirus trifoliata, Citrus sunki, Citrus sinensis and contrasting hybrids reveals HLB tolerance mechanisms
Cited by: 17
Author(s): Maiara Curtolo, Inaiara de Souza Pacheco, Leonardo Pires Boava, Marco Aurélio Takita, Laís Moreira Granato, Diogo Manzano Galdeano, Alessandra Alves de Souza, Mariângela Cristofani–Yaly, Marcos Antônio Machado
Software Mentions: 1
Published: almost 6 years ago

10.3390/jpm10020040

The CFTR Mutation c.3453G > C (D1152H) Confers an Anion Selectivity Defect in Primary Airway Tissue that Can be Rescued by Ivacaftor
Cited by: 21
Author(s): Onofrio Laselva, Theo J. Moraes, Gengming He, Claire Bartlett, Ida Szàrics, Hong Ouyang, Tarini Gunawardena, Lisa J. Strug, Christine E. Bear, Tanja Gonska
Software Mentions: 1
Published: over 6 years ago

10.1186/s12864-015-2349-8

FRAMA: from RNA-seq data to annotated mRNA assemblies
Cited by: 31
Author(s): Martin Bens, Arne Sahm, Marco Groth, Niels Jahn, Michaela Morhart, Susanne Holtze, Thomas B. Hildebrandt, Matthias Platzer, Karol Szafranski
Software Mentions: 1
Published: over 10 years ago

10.1002/advs.202100805

A 3D Fiber‐Hydrogel Based Non‐Viral Gene Delivery Platform Reveals that microRNAs Promote Axon Regeneration and Enhance Functional Recovery Following Spinal Cord Injury
Cited by: 33
Author(s): Na Zhang, Junquan Lin, Vincent Po Hen Lin, Ulla Milbreta, Jiah Shin Chin, Elaine Guo Yan Chew, Michelle Mulan Lian, Jia Nee Foo, Kunyu Zhang, Wutian Wu, Sing Yian Chew
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-020-80691-6

Short prolactin isoforms are expressed in photoreceptors of canine retinas undergoing retinal degeneration
Cited by: 3
Author(s): Raghavi Sudharsan, Leonardo Murgiano, Hsin‐Yao Tang, Timothy W. Olsen, Venkata R M Chavali, Gustavo D. Aguirre, William A. Beltran
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-020-79005-7

Quantitative trait loci and transcriptome signatures associated with avian heritable resistance to Campylobacter
Cited by: 8
Author(s): Androniki Psifidi, Andreas Kranis, Lisa Rothwell, Abi Bremner, Kay Russell, Diego Robledo, Stephen J. Bush, Mark Fife, Paul Hocking, Georgios Banos, David Hume, Jim Kaufman, Richard Bailey, Santiago Avendaño, Kellie Watson, Pete Kaiser, Mark P. Stevens
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-020-80653-y

Transfer of oral bacteria to the fetus during late gestation
Cited by: 4
Author(s): Kevin Yu, Michelle Rodriguez, Zubin Paul, Elizabeth M. Gordon, Tongjun Gu, Kelly C. Rice, Eric W. Triplett, Maureen Keller‐Wood, Charles E. Wood
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-021-81060-7

CD14+ monocytes repress gamma globin expression at early stages of erythropoiesis
Cited by: 2
Author(s): Steven Heshusius, Esther Heideveld, Marieke von Lindern, Emile van den Akker
Software Mentions: 1
Published: over 5 years ago

10.1186/s12864-016-3414-7

Genome-wide standing variation facilitates long-term response to bidirectional selection for antibody response in chickens
Cited by: 20
Author(s): Mette Lillie, Zheya Sheng, Christa F. Honaker, Ben Dorshorst, C. M. Ashwell, P. B. Siegel, Örjan Carlborg
Software Mentions: 1
Published: over 9 years ago

10.1007/s00415-018-8788-9

Are visual functions diagnostic signs of the minimally conscious state? an integrative review
Cited by: 8
Author(s): Berno U. H. Overbeek, H.J. Eilander, Jan C. M. Lavrijsen, Raymond T.C.M. Koopmans
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-021-81774-8

Pericytes contribute to the islet basement membranes to promote beta-cell gene expression
Cited by: 21
Author(s): Lina Sakhneny, Alona Epshtein, Limor Landsman
Software Mentions: 1
Published: over 5 years ago

10.1186/s12864-020-6643-8

A large-scale comparative study of isoform expressions measured on four platforms
Cited by: 6
Author(s): Wei Zhang, Raphael Petegrosso, Ju Young Chang, Jiao Sun, Jeongsik Yong, Jeremy Chien, Rui Kuang
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-021-82658-7

Arrayed CRISPR reveals genetic regulators of tau aggregation, autophagy and mitochondria in Alzheimer’s disease model
Cited by: 11
Author(s): Lishu Duan, Mufeng Hu, Joseph A. Tamm, Yelena Y. Grinberg, Fang Shen, Yating Chai, Hualin Simon Xi, Lauren Gibilisco, Brinda Ravikumar, Vivek Gautam, Eric Karran, Matthew Townsend, Robert V. Talanian
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-021-82737-9

Adaptor Template Oligo-Mediated Sequencing (ATOM-Seq) is a new ultra-sensitive UMI-based NGS library preparation technology for use with cfDNA and cfRNA
Cited by: 1
Author(s): Thomas L. Dunwell, Simon Christopher Dailey, Anine Larsen Ottestad, Jihang Yu, Philipp Becker, Sarah Scaife, Susan D. Richman, Henry M. Wood, Hayley L Slaney, Daniel Bottomley, Xiangsheng Yang, Hui Xiao, Sissel Gyrid Freim Wahl, Bjørn Henning Grønberg, Hong Dai, Guoliang Fu
Software Mentions: 1
Published: over 5 years ago

10.1186/s12863-019-0765-5

Meta-analysis of GWA studies provides new insights on the genetic architecture of skin pigmentation in recently admixed populations
Cited by: 27
Author(s): Frida Lona-Durazo, Natalia Hernandez‐Pacheco, Shaohua Fan, Tongwu Zhang, Jiyeon Choi, Michael A. Kovacs, Stacie K. Loftus, Phuong Le, Melissa Edwards, César Fortes-Lima, Celeste Eng, Scott Huntsman, Donglei Hu, Enrique Javier Gómez-Cabezas, Lilia C. Marín-Padrón, Jonas Grauholm, Ole Mors, Esteban G. Burchard, Heather L. Norton, William J. Pavan, Kevin M. Brown, Sarah A. Tishkoff, María Pino-Yanes, Sandra Beleza, Beatriz Marcheco-Teruel, Esteban J. Parra
Software Mentions: 1
Published: about 7 years ago

10.1523/JNEUROSCI.1021-21.2021

Postmitotic Prox1 Expression Controls the Final Specification of Cortical VIP Interneuron Subtypes
Cited by: 4
Author(s): Tevye Jason Stachniak, Rahel Kästli, Olivia Hanley, Ali Özgür Argunşah, Elianne Grietje Theodora van der Valk, George Kanatouris, Theofanis Karayannis
Software Mentions: 1
Published: about 5 years ago

10.1523/JNEUROSCI.0986-17.2017

Graded Elevation of c-Jun in Schwann CellsIn Vivo: Gene Dosage Determines Effects on Development, Remyelination, Tumorigenesis, and Hypomyelination
Cited by: 62
Author(s): Shaline V. Fazal, Jose A. Gomez-Sanchez, Laura Wagstaff, Nicolò Musner, G. Otto, Martin Janz, Rhona Mirsky, Kristján R. Jessen
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-021-84058-3

Adipose-derived mesenchymal stem cells differentiate into heterogeneous cancer-associated fibroblasts in a stroma-rich xenograft model
Cited by: 26
Author(s): Yoshihiro Miyazaki, Tatsuya Oda, Yuki Inagaki, Hiroko Kushige, Yutaka Saitō, Nobuhito Mori, Yoichiro Takayama, Yutaro Kumagai, Toutai Mitsuyama, Yasuyuki S. Kida
Software Mentions: 1
Published: over 5 years ago

10.1186/1471-2296-10-20

Stemming the Tide of Antibiotic Resistance (STAR): A protocol for a trial of a complex intervention addressing the 'why' and 'how' of appropriate antibiotic prescribing in general practice
Cited by: 27
Author(s): Sharon Anne Simpson, Christopher Collett Butler, Kerenza Hood, David Cohen, Frank David John Dunstan, Meirion Rhys Evans, Stephen Rollnick, Linda Moore, Monika Hare, Marie Bekkers, J. D. Evans
Software Mentions: 1
Published: over 17 years ago

10.1186/1471-2296-11-34

Enhancing the quality of antibiotic prescribing in Primary Care: Qualitative evaluation of a blended learning intervention
Cited by: 42
Author(s): Marie-Jet Bekkers, Sharon Anne Simpson, Frank David John Dunstan, Kerenza Hood, Monika Hare, J. D. Evans, Christopher Collett Butler
Software Mentions: 1
Published: over 16 years ago

10.1038/s41598-021-84981-5

ATP signaling in the integrative neural center of Aplysia californica
Cited by: 3
Author(s): János Győri, Andrea B. Kohn, Daria Y. Romanova, Leonid L. Moroz
Software Mentions: 1
Published: over 5 years ago

10.1155/2020/6065736

Identification of a Modified HOXB9 mRNA in Breast Cancer
Cited by: 1
Author(s): Ayako Nakashoji, Tetsu Hayashida, Yuko Kawai, Masayuki Kikuchi, Rurina Watanuki, Takamichi Yokoe, Tomoko Seki, Maiko Takahashi, Kazuhiro Miyao, Shigeo Yamaguchi, Yuko Kitagawa
Software Mentions: 1
Published: over 6 years ago

10.1186/s12862-015-0403-4

Molecular phylogeny of the subfamily Stevardiinae Gill, 1858 (Characiformes: Characidae): classification and the evolution of reproductive traits
Cited by: 43
Author(s): Andréa T. Thomaz, Dahiana Arcila, Guillermo Ortı́, Luiz Roberto Malabarba
Software Mentions: 1
Published: about 11 years ago

10.1186/s12862-018-1161-x

Unexpected conservation of the RNA splicing apparatus in the highly streamlined genome of Galdieria sulphuraria
Cited by: 13
Author(s): Huan Qiu, Alessandro W. Rossoni, Andreas P.M. Weber, Hwan Su Yoon, Debashish Bhattacharya
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-021-85704-6

Metabolomics analysis of follicular fluid coupled with oocyte aspiration reveals importance of glucocorticoids in primate periovulatory follicle competency
Cited by: 8
Author(s): Sweta Ravisankar, Kelsey E. Brooks, Mark K. Murphy, Nash Redmayne, Jae-Yong Ryu, Jason M. Kinchen, Shawn L. Chavez, Jon D. Hennebold
Software Mentions: 1
Published: over 5 years ago

10.1016/j.isci.2018.11.012

Ultradian Rhythms in the Transcriptome of Neurospora crassa
Cited by: 14
Author(s): Bharath Ananthasubramaniam, Axel Diernfellner, Michael Brunner, Hanspeter Herzel
Software Mentions: 1
Published: almost 8 years ago

10.1186/s12862-016-0769-y

Expanding anchored hybrid enrichment to resolve both deep and shallow relationships within the spider tree of life
Cited by: 141
Author(s): Chris A. Hamilton, Alan R. Lemmon, Emily Moriarty Lemmon, Jason E. Bond
Software Mentions: 1
Published: almost 10 years ago

10.1016/j.isci.2020.101698

The Rigor and Transparency Index Quality Metric for Assessing Biological and Medical Science Methods
Cited by: 36
Author(s): Joe Menke, Martijn Roelandse, İbrahim Burak Özyurt, Maryann E. Martone, Anita Bandrowski
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12862-018-1120-6

Population size may shape the accumulation of functional mutations following domestication
Cited by: 13
Author(s): Jianhai Chen, Peihong Ni, Xinyun Li, Jianlin Han, Ivan Jakovlić, Chengjun Zhang, Shuhong Zhao
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-021-86908-6

CDC2-like (CLK) protein kinase inhibition as a novel targeted therapeutic strategy in prostate cancer
Cited by: 15
Author(s): Simon Uzor, Sean Porazinski, Ling Li, Bethany Clark, Masahiko Ajiro, Kei Iida, Masatoshi Hagiwara, Abdullah A. Alqasem, Claire M Perks, Ian Wilson, Sebastian Oltean, Michael Ladomery
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-021-87353-1

The impact of indole-3-lactic acid on immature intestinal innate immunity and development: a transcriptomic analysis
Cited by: 17
Author(s): Wuyang Huang, Ky Young Cho, Di Meng, W. Allan Walker
Software Mentions: 1
Published: over 5 years ago

10.1186/s12861-019-0196-6

Deletion of Tet proteins results in quantitative disparities during ESC differentiation partially attributable to alterations in gene expression
Cited by: 7
Author(s): Michael Reimer, Kirthi Pulakanti, Linzheng Shi, Alex M. Abel, Mingyu Liang, Subramaniam Malarkannan, Sridhar Rao
Software Mentions: 1
Published: about 7 years ago

10.1186/s12861-021-00245-5

Msx1 haploinsufficiency modifies the Pax9-deficient cardiovascular phenotype
Cited by: 6
Author(s): Ramada R. Khasawneh, Ralf Kist, Rachel Queen, Rafiqul Hussain, Jonathan Coxhead, Jürgen Schneider, Timothy J. Mohun, Stéphane Zaffran, Heiko Peters, Helen M. Phillips, Simon D. Bamforth
Software Mentions: 1
Published: almost 5 years ago

10.1186/s12885-020-07135-2

Global targetome analysis reveals critical role of miR-29a in pancreatic stellate cell mediated regulation of PDAC tumor microenvironment
Cited by: 12
Author(s): Shatovisha Dey, Sheng Liu, Tricia D. Factora, Solaema Taleb, Primavera Riverahernandez, Lata Udari, Xiaoling Zhong, Jun Wan, Janaiah Kota
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-021-88628-3

Arginyltransferase (Ate1) regulates the RGS7 protein level and the sensitivity of light-evoked ON-bipolar responses
Cited by: 5
Author(s): Marie E. Fina, Junling Wang, Sergei Nikonov, Stephanie Sterling, Noga Vardi, Anna Kashina, Dawei Dong
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-021-88671-0

Germinal GLT8D1, GATAD2A and SLC25A39 mutations in a patient with a glomangiopericytal tumor and five different sarcomas over a 10-year period
Cited by: 0
Author(s): Arnaud Beddok, Gaëlle Pérot, Sophie Le Guellec, Noémie Thébault, Alexandre Coutté, Henri Sevestre, Bruno Chauffert, Frédéric Chibon
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-021-90047-3

From multi-omics integration towards novel genomic interaction networks to identify key cancer cell line characteristics
Cited by: 2
Author(s): T. J. M. Kuijpers, J. C. S. Kleinjans, Danyel Jennen
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-021-89927-5

Predicting MHC I restricted T cell epitopes in mice with NAP-CNB, a novel online tool
Cited by: 3
Author(s): Carlos Wert-Carvajal, Rubén J. Sánchez-García, José Ramón Macías, Rebeca Sanz‐Pamplona, Almudena Méndez Pérez, Ramón Alemany, Esteban Veiga, C.O.S. Sorzano, Arrate Muñoz-Barrutia
Software Mentions: 1
Published: over 5 years ago

10.1186/1471-2407-10-566

Raloxifene inhibits tumor growth and lymph node metastasis in a xenograft model of metastatic mammary cancer
Cited by: 14
Author(s): Masa‐Aki Shibata, Junji Morimoto, Eiko Shibata, Hitomi Kurose, Kanako Akamatsu, Zhong‐Lian Li, Moriaki Kusakabe, Masahide Ohmichi, Yoshinori Otsuki
Software Mentions: 1
Published: almost 16 years ago

10.1186/s12885-020-07081-z

MiR-34c downregulation leads to SOX4 overexpression and cisplatin resistance in nasopharyngeal carcinoma
Cited by: 18
Author(s): Pierre-Antoine Bissey, Mona Teng, Jacqueline H. Law, Wei Shi, Jeff Bruce, Valentin Petit, Sai Wah Tsao, Kenneth W. Yip, Feifei Liu
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-021-90798-z

Transcriptome analysis of MBD5-associated neurodevelopmental disorder (MAND) neural progenitor cells reveals dysregulation of autism-associated genes
Cited by: 4
Author(s): Sureni V Mullegama, Stephen P. Klein, Stephen R. Williams, Jeffrey W. Innis, Frank J. Probst, Chad R. Haldeman-Englert, Julián A. Martínez-Agosto, Ying Yang, Yuchen Tian, Sarah H. Elsea, Toshihiko Ezashi
Software Mentions: 1
Published: over 5 years ago

10.1186/s40478-021-01170-1

Novel targetable FGFR2 and FGFR3 alterations in glioblastoma associate with aggressive phenotype and distinct gene expression programs
Cited by: 21
Author(s): Maria-Magdalena Georgescu, Mohammad Zahidul Islam, Yan Li, James Traylor, Anil Nanda
Software Mentions: 1
Published: over 5 years ago

10.1016/j.isci.2021.103013

Brain hierarchy score: Which deep neural networks are hierarchically brain-like?
Cited by: 29
Author(s): Soma Nonaka, Kei Majima, Shuntaro C. Aoki, Yukiyasu Kamitani
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-021-90510-1

Human induced pluripotent stem cell derived hepatocytes provide insights on parenteral nutrition associated cholestasis in the immature liver
Cited by: 4
Author(s): T. Hang Nghiem-Rao, Courtney Pfeifer, Michelle Asuncion, Joshua Nord, Daniel J. Schill, Kirthi Pulakanti, Shailendra B. Patel, Lisa Ann Cirillo, Sridhar Rao
Software Mentions: 1
Published: over 5 years ago

10.1016/j.isci.2021.103080

Prediction and identification of synergistic compound combinations against pancreatic cancer cells
Cited by: 2
Author(s): Yasaman KalantarMotamedi, Ran Joo Choi, Siang-Boon Koh, Jo L. Bramhall, Tai-Ping Fan, Andreas Bender
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-021-92529-w

The ATF6β-calreticulin axis promotes neuronal survival under endoplasmic reticulum stress and excitotoxicity
Cited by: 8
Author(s): Dinh Thi Nguyen, Thuong Manh Le, Tsuyoshi Hattori, Mika Takarada-Iemata, Hiroshi Ishii, Jureepon Roboon, Takashi Tamatani, Takayuki Kannon, Kazuyoshi Hosomichi, Atsushi Tajima, Shusuke Taniuchi, Masato Miyake, Seiichi Oyadomari, Takashi Tanaka, Nobuo Kato, Shunsuke Saito, Kazutoshi Mori, Osamu Hori
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-021-91358-1

Neoantigens elicit T cell responses in breast cancer
Cited by: 13
Author(s): Takafumi Morisaki, Makoto Kubo, Masayo Umebayashi, Poh Yin Yew, Satoshi Yoshimura, Jae-Hyun Park, Kazuma Kiyotani, Masaya Kai, Mai Yamada, Yoshinao Oda, T. Morisaki, Masafumi Nakamura
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-021-93180-1

Florigen governs shoot regeneration
Cited by: 4
Author(s): Yaarit Kutsher, Michal Fisler, Adi Faigenboim, Moshe Reuveni
Software Mentions: 1
Published: about 5 years ago

10.1098/rsob.180110

mmi1 and rep2 mRNAs are novel RNA targets of the Mei2 RNA-binding protein during early meiosis in Schizosaccharomyces pombe
Cited by: 11
Author(s): K. Mukherjee, Bruce Futcher, Janet Leatherwood
Software Mentions: 1
Published: about 8 years ago

10.1186/s12885-021-08616-8

Differential effects of HIF2α antagonist and HIF2α silencing in renal cancer and sensitivity to repurposed drugs
Cited by: 5
Author(s): Esther Arnaiz, Ana Miar, Esther Bridges, Naveen Prasad, Stephanie B. Hatch, Daniel Ebner, Charles H. Lawrie, Adrian L. Harris
Software Mentions: 1
Published: about 5 years ago

10.1186/s12885-019-5572-x

Nonsynonymous, synonymous and nonsense mutations in human cancer-related genes undergo stronger purifying selections than expectation
Cited by: 59
Author(s): Duan Chu, Lai Wei
Software Mentions: 1
Published: over 7 years ago

10.18632/oncotarget.7242

Pinin interacts with C-terminal binding proteins for RNA alternative splicing and epithelial cell identity of human ovarian cancer cells
Cited by: 28
Author(s): Yanli Zhang, Jamie Sui-Lam Kwok, Pui–Wah Choi, Minghua Liu, Junzheng Yang, Margit Singh, Shu‐Kay Ng, William R. Welch, Michael G. Muto, Stephen Kwok Wing Tsui, Stephen P. Sugrue, Ross S. Berkowitz, Shu-Wing Ng
Software Mentions: 1
Published: over 10 years ago

10.18632/oncotarget.9033

Functional networks of aging markers in the glomeruli of IgA nephropathy: a new therapeutic opportunity
Cited by: 19
Author(s): Hong Jiang, Ludan Liang, Jing Qin, Yingying Lu, Bingjue Li, Yucheng Wang, Ching‐Long Lin, Qin Zhou, Shi Feng, Shun H. Yip, Feng Xu, En Yin Lai, Junwen Wang, Jianghua Chen
Software Mentions: 1
Published: over 10 years ago

10.1098/rsob.190235

Neoleukin-2 enhances anti-tumour immunity downstream of peptide vaccination targeted by an anti-MHC class II VHH
Cited by: 9
Author(s): Stephanie J Crowley, Patrick T. Bruck, M. Aladdin Bhuiyan, Amelia Mitchell-Gears, Michael J. Walsh, Kevin Zhangxu, Lestat Ali, Hee‐Jin Jeong, Jessica R. Ingram, David M. Knipe, Hidde L. Ploegh, Michael Dougan, Stephanie K. Dougan
Software Mentions: 1
Published: over 6 years ago

10.1098/rsif.2020.0340

Explicit characterization of human population connectivity reveals long run persistence of interregional dengue shocks
Cited by: 6
Author(s): Jue Tao Lim, Borame Sue Lee Dickens, Yinan Mao, Chae Woon Kwak, Ng Lee Ching, Alex R. Cook
Software Mentions: 1
Published: about 6 years ago

10.1186/s12915-020-00840-1

Pancreatic and intestinal endocrine cells in zebrafish share common transcriptomic signatures and regulatory programmes
Cited by: 15
Author(s): Arnaud Lavergne, Estefanía Tarifeño-Saldivia, Justine Pirson, Anne-Sophie Reuter, Lydie Flasse, Isabelle Manfroid, Marianne L. Voz, Bernard Peers
Software Mentions: 1
Published: about 6 years ago

10.1186/s40478-019-0783-6

Ischemic axonal injury up-regulates MARK4 in cortical neurons and primes tau phosphorylation and aggregation
Cited by: 20
Author(s): Eric Y. Hayden, Jennifer N. Putman, Stefanie Nuñez, Woo Shik Shin, Mandavi R. Oberoi, Malena Charreton, Suman Dutta, Zizheng Li, Yutaro Komuro, Mary Joy, Gal Bitan, Allan MacKenzie-Graham, Lin Jiang, Jason D Hinman
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-021-95630-2

Transcriptomic, proteomic, and metabolomic analyses identify candidate pathways linking maternal cadmium exposure to altered neurodevelopment and behavior
Cited by: 11
Author(s): Kathleen M Hudson, Emily Shiver, Jianshi Yu, Sanya Mehta, Dereje D. Jima, Maureen A. Kane, Heather B. Patisaul, Michael Cowley
Software Mentions: 1
Published: about 5 years ago

10.1186/s12915-021-00989-3

Large-scale transcriptomics to dissect 2 years of the life of a fungal phytopathogen interacting with its host plant
Cited by: 18
Author(s): Elise Gay, Jessica L. Soyer, Nicolas Lapalu, Juliette Linglin, Isabelle Fudal, Corinne Da Silva, Patrick Wincker, Jean‐Marc Aury, Corinne Cruaud, Anne Levrel, Jocelyne Lemoine, Régine Delourme, Thierry Rouxel, Marie‐Hélène Balesdent
Software Mentions: 1
Published: over 5 years ago

10.6028/jres.101.035

CIF (Crystallographic Information File). A standard for crystallographic data interchange
Cited by: 10
Author(s): I. D. Brown
Software Mentions: 1
Published: over 30 years ago

10.1038/s41598-021-97087-9

Dectin-2 mediates phagocytosis of Lactobacillus paracasei KW3110 and IL-10 production by macrophages
Cited by: 7
Author(s): Mia Yoshikawa, Shoichi Yamada, Miho Sugamata, Osamu Kanauchi, Yuji Morita
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-021-96854-y

Multi-tissue transcriptome analysis of two Begonia species reveals dynamic patterns of evolution in the chalcone synthase gene family
Cited by: 3
Author(s): Katie Emelianova, Andrea Martínez Martínez, Lucia Campos-Domínguez, Catherine Kidner
Software Mentions: 1
Published: about 5 years ago

10.1186/s40478-020-01061-x

Bexarotene normalizes chemotherapy-induced myelin decompaction and reverses cognitive and sensorimotor deficits in mice
Cited by: 15
Author(s): Angie C.A. Chiang, Alexandre V. Seua, Pooja Singhmar, Luis D. Arroyo, Rajasekaran Mahalingam, Jian Hu, Annemieke Kavelaars, Cobi J. Heijnen
Software Mentions: 1
Published: almost 6 years ago

10.1155/2021/9970896

Toxicology and Biodegradability of a Phthalate-Free and Bio-Based Novel Plasticizer
Cited by: 6
Author(s): Sophie Simar-Mentières, Fabrice Nesslany, M.-L. Sola, S. Mortier, Jérôme Raimbault, Franck Gondelle, Laure Chabot, Pascal Pandard, Daniel Wils, Aouatif Chentouf
Software Mentions: 1
Published: about 5 years ago

10.1155/2017/5202913

Genetic Variability of Exotic Sugarcane Genotypes
Cited by: 6
Author(s): M. N. Alam, Ujjal Kumar Nath, K. M. Rezaul Karim, Mostak Ahmed, R. Y. Mitul
Software Mentions: 1
Published: over 9 years ago

10.3390/s140813759

Confronting Passive and Active Sensors with Non-Gaussian Statistics
Cited by: 34
Author(s): Pablo Rodríguez‐Gonzálvez, Jesús García-Gago, Javier Gómez-Lahoz, Diego González‐Aguilera
Software Mentions: 1
Published: about 12 years ago

10.3390/s16122168

A Modified Magnetic Gradient Contraction Based Method for Ferromagnetic Target Localization
Cited by: 25
Author(s): Chen Wang, Xiaojuan Zhang, Xiaodong Qu, Xiaoqing Pan, Guangyou Fang, Luzhao Chen
Software Mentions: 1
Published: almost 10 years ago

10.3390/s19183861

Superpixel-Based Temporally Aligned Representation for Video-Based Person Re-Identification
Cited by: 4
Author(s): Changxin Gao, Jin Wang, Leyuan Liu, Jin-Gang Yu, Nong Sang
Software Mentions: 1
Published: about 7 years ago

10.1016/j.jtauto.2021.100090

An elevated polyclonal free light chain level reflects a strong interferon signature in patients with systemic autoimmune diseases
Cited by: 12
Author(s): Éléonore Bettacchioli, Christelle Le Gaffric, Margaux Mazeas, María Orietta Borghi, Johan Frostegård, Guillermo Barturen, Zuzanna Makowska, Sepideh Babei, Ralf Lesche, Pier Luigi Meroni, Marta E. Alarcón‐Riquelme, Yves Renaudineau
Software Mentions: 1
Published: over 5 years ago

10.1186/s12915-020-00879-0

Harnessing A3G for efficient and selective C-to-T conversion at C-rich sequences
Cited by: 5
Author(s): Wenxia Yu, Jianan Li, Shisheng Huang, Xiangyang Li, Ping Li, Guanglei Li, Aibin Liang, Chao Tian, Xingxu Huang
Software Mentions: 1
Published: over 5 years ago

10.1186/s12859-019-2597-8

pblat: a multithread blat algorithm speeding up aligning sequences to genomes
Cited by: 55
Author(s): Meng Wang, Lei Kong
Software Mentions: 1
Published: over 7 years ago

10.1186/s12859-018-2203-5

Combining RNA-seq data and homology-based gene prediction for plants, animals and fungi
Cited by: 154
Author(s): Jens Keilwagen, Frank Hartung, Michael Paulini, Sven Twardziok, Jan Grau
Software Mentions: 1
Published: over 8 years ago

10.1186/2193-1801-3-53

The supporting effects of high luminous conditions on grade 3 oral reading fluency scores
Cited by: 10
Author(s): Michael S. Mott, Daniel H. Robinson, Thea Williams-Black, Susan McClelland
Software Mentions: 1
Published: over 12 years ago

10.1186/s40064-016-2657-8

Formal analysis of imprecise system requirements with Event-B
Cited by: 3
Author(s): Hong Anh Le, Shinichi Nakajima, Ninh Thuan Truong
Software Mentions: 1
Published: about 10 years ago

10.1186/s12859-019-3088-7

Exploratory analysis of transposable elements expression in the C. elegans early embryo
Cited by: 16
Author(s): Federico Ansaloni, Margherita Scarpato, Elia Di Schiavi, Stefano Gustincich, Remo Sanges
Software Mentions: 1
Published: almost 7 years ago

10.1016/j.stemcr.2019.09.011

Association of Human iPSC Gene Signatures and X Chromosome Dosage with Two Distinct Cardiac Differentiation Trajectories
Cited by: 41
Author(s): Agnieszka D’Antonio‐Chronowska, Maureen D. Donovan, William W. Greenwald, Jennifer P. Nguyen, Kyohei Fujita, Sherin I. Hashem, Hiroko Matsui, Francesca Soncin, Mana M. Parast, Michelle C. Ward, Florence Coulet, Erin N. Smith, Eric Adler, Matteo D’Antonio, Kelly A. Frazer
Software Mentions: 1
Published: almost 7 years ago

10.1016/j.stemcr.2020.01.008

Autophagy Reprograms Alveolar Progenitor Cell Metabolism in Response to Lung Injury
Cited by: 28
Author(s): Xue Li, Junping Wu, Xin Sun, Qi Wu, Yue Li, Kuan Li, Qiuyang Zhang, Yu Liu, E. Dale Abel, Huaiyong Chen
Software Mentions: 1
Published: over 6 years ago

10.1107/S2059798319016577

Amyloid structure determination in RELION-3.1
Cited by: 136
Author(s): S.H.W. Scheres
Software Mentions: 1
Published: over 6 years ago

10.1016/j.stemcr.2021.06.013

Hypersensitivity response has negligible impact on Hematopoietic Stem Cells
Cited by: 1
Author(s): Nir Bujanover, Roshina Thapa, Oron Goldstein, Leonid Olender, Omri Sharabi, Michael D. Milsom, Roi Gazit
Software Mentions: 1
Published: about 5 years ago

10.1186/s13287-019-1319-5

The role of insulin as a key regulator of seeding, proliferation, and mRNA transcription of human pluripotent stem cells
Cited by: 6
Author(s): Mohammad Shahbazi, Paige Cundiff, Wenyu Zhou, Philip Lee, Amar Patel, Sunita L. D’Souza, Fahim Abbasi, Thomas Quertermous, Joshua W. Knowles
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pone.0157758

Characterisation of CDKL5 Transcript Isoforms in Human and Mouse
Cited by: 47
Author(s): Ralph D. Hector, Owen Dando, Nicoletta Landsberger, Charlotte Kilstrup‐Nielsen, Peter C. Kind, Mark E.S. Bailey, Stuart Cobb
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0239275

The R2R3-MYB gene family in banana (Musa acuminata): Genome-wide identification, classification and expression patterns
Cited by: 33
Author(s): Boas Pucker, Ashutosh Pandey, Bernd Weißhaar, Ralf Stracke
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0148164

Expression of mRNA Encoding Mcu and Other Mitochondrial Calcium Regulatory Genes Depends on Cell Type, Neuronal Subtype, and Ca2+ Signaling
Cited by: 25
Author(s): Nóra M. Márkus, Philip Hasel, Jing Qiu, Karen Bell, Samuel Heron, Peter C. Kind, Owen Dando, T. Ian Simpson, Giles E. Hardingham
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0149229

Major Transcriptome Changes Accompany the Growth of Pseudomonas aeruginosa in Blood from Patients with Severe Thermal Injuries
Cited by: 30
Author(s): Cassandra Kruczek, Kameswara Rao Kottapalli, Sharmila Dissanaike, Nyaradzo Dzvova, John Griswold, Jane A. Colmer-Hamood, Abdul N. Hamood
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0186888

TrpA1 activation in peripheral sensory neurons underlies the ionic basis of pain hypersensitivity in response to vinca alkaloids
Cited by: 19
Author(s): Nina Boiko, Geraldo Medrano, Elizabeth Montano, Nan Jiang, Claire Williams, Ngonidzashe B Madungwe, Jean C. Bopassa, Charles C. Kim, Jay Z. Parrish, Kenneth M. Hargreaves, James D. Stockand, Benjamin A. Eaton
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0089459

MARIS: Method for Analyzing RNA following Intracellular Sorting
Cited by: 88
Author(s): Siniša Hrvatin, Francis Deng, Barry O'Donnell, David K. Gifford, Douglas A. Melton
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0211244

Myc-induced nuclear antigen constrains a latent intestinal epithelial cell-intrinsic anthelmintic pathway
Cited by: 5
Author(s): M.R.A. Pillai, Belgacem Mihi, Kenji Ishiwata, Kiminori Nakamura, Naoya Sakuragi, David Finkelstein, Maureen A. McGargill, Toshinori Nakayama, Tokiyoshi Ayabe, Mathew L. Coleman, Mark Bix
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0036566

Classification of HIV-1 Sequences Using Profile Hidden Markov Models
Cited by: 7
Author(s): Sanjiv K. Dwivedi, Supratim Sengupta
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0201756

Identification of genomic regions associated with agronomic and biofortification traits in DH populations of rice
Cited by: 46
Author(s): B. P. Mallikarjuna Swamy, Gwen Iris L. Descalsota, Chau Thanh Nha, Amery Amparado, Mary Ann Inabangan-Asilo, Christine Manito, Frances Tesoro, Russell Reinke
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0211709

Modeling financial interval time series
Cited by: 1
Author(s): Lin Liang, Li Hsien Sun
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0221008

Genetic variation for root architectural traits in response to phosphorus deficiency in mungbean at the seedling stage
Cited by: 29
Author(s): V. R. Reddy, Muraleedhar S. Aski, Gyan P. Mishra, Harsh Kumar Dikshit, Akanksha Singh, Renu Pandey, Madan Pal Singh, Gayacharan, Vinita Ramtekey, Priti, Neha Rai, Ramakrishnan M. Nair
Software Mentions: 1
Published: over 6 years ago

10.1186/s13287-021-02485-5

Divergence in chondrogenic potential between in vitro and in vivo of adipose- and synovial-stem cells from mouse and human
Cited by: 2
Author(s): Ryota Chijimatsu, Shinji Miwa, Gensuke Okamura, Junya Miyahara, Naohiro Tachibana, Hisatoshi Ishikura, Junya Higuchi, Yuji Maenohara, Shinsaku Tsuji, Shin Sameshima, Kentarô Takagi, Keiu Nakazato, Kohei Kawaguchi, Ryota Yamagami, Hiroshi Inui, Shuji Taketomi, Sakae Tanaka, Taku Saito
Software Mentions: 1
Published: about 5 years ago

10.1007/s12015-018-9851-8

Generation of Isogenic Controls for In Vitro Disease Modelling of X-Chromosomal Disorders
Cited by: 16
Author(s): Lisa D. Hinz, Stephanie D. Hoekstra, Kyoko Watanabe, Daniëlle Posthuma, Vivi M. Heine
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0033967

High Throughput Multiple Locus Variable Number of Tandem Repeat Analysis (MLVA) of Staphylococcus aureus from Human, Animal and Food Sources
Cited by: 39
Author(s): Daniel Sobral, Štefan Schwarz, Dominique Bergonier, Anne Brisabois, Andrea T. Feßler, Florence Gilbert, Kristina Kadlec, B. Lebeau, Fabienne Loisy-Hamon, Michaël Treilles, Christine Pourcel, Gilles Vergnaud
Software Mentions: 1
Published: over 14 years ago

10.18632/oncotarget.17765

Intra-tumour molecular heterogeneity of clear cell renal cell carcinoma reveals the diversity of the response to targeted therapies using patient-derived xenograft models
Cited by: 17
Author(s): Bo Hong, Yong Yang, Sheng Guo, Shayiremu Duoerkun, Xiaohu Deng, Fan Chen, Shijun Yu, Wubin Qian, Qi-Xiang Li, Qing Li, Kan Gong, Ning Zhang
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0207503

Distinct vascular genomic response of proton and gamma radiation—A pilot investigation
Cited by: 3
Author(s): Emanuela Ricciotti, Dimitra Sarantopoulou, Gregory R. Grant, Jenine K. Sanzari, Gabriel Krigsfeld, Amber J. Kiliti, Ann R. Kennedy, Tilo Großer
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0242884

MEF2 transcription factors differentially contribute to retinal ganglion cell loss after optic nerve injury
Cited by: 6
Author(s): Xin Xia, Caroline Yu, Minjuan Bian, Catalina Sun, Bogdan Tanasă, Kun-Che Chang, Dawn M. Bruffett, Hrishikesh Thakur, Shweta Shah, Cara Knasel, Evan G. Cameron, Michael S. Kapiloff, Jeffrey L. Goldberg
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0192170

Induction of epigenetic variation in Arabidopsis by over-expression of DNA METHYLTRANSFERASE1 (MET1)
Cited by: 14
Author(s): Samuel George Philip Brocklehurst, Michael R. Watson, Ian Carr, Suzan Out, Iris Heidmann, Peter Meyer
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0122602

Binary Gene Expression Patterning of the Molt Cycle: The Case of Chitin Metabolism
Cited by: 23
Author(s): Shai Abehsera, Lilah Glazer, Jenny Tynyakov, Inbar Plaschkes, Vered Chalifa‐Caspi, Isam Khalaila, Eliahu D. Aflalo, Amir Sagi
Software Mentions: 1
Published: over 11 years ago

Projects: cran: STAR

Science Score: 100/100

Bonuses:

Papers Mentioning STAR 5,759