10.1371/journal.pgen.1007721

Locus suicide recombination actively occurs on the functionally rearranged IgH allele in B-cells from inflamed human lymphoid tissues
Cited by: 15
Author(s): Iman Dalloul, François Boyer, Zeinab Dalloul, Amandine Pignarre, Gersende Caron, Thierry Fest, Fabrice Chatonnet, Céline Delaloy, Anne Durandy, Robin Jeannet, Emilie Lereclus, Hend Boutouil, Jean-Claude Aldigier, Sophie Péron, Sandrine Le Noir, Jeanne Cook-Moreau, Michel Cogné
Software Mentions: 1
Published: about 7 years ago

10.1186/1475-925X-13-43

Reducing the impact of insulin sensitivity variability on glycaemic outcomes using separate stochastic models within the STAR glycaemic protocol
Cited by: 17
Author(s): Felicity Thomas, Christopher G. Pretty, Liam Fisk, Geoffrey M. Shaw, J. Geoffrey Chase, Thomas Desaive
Software Mentions: 1
Published: about 12 years ago

10.1038/s41598-019-53915-7

An epigenetic screening determines BET proteins as targets to suppress self-renewal and tumorigenicity in canine mammary cancer cells
Cited by: 10
Author(s): Pedro Luiz Porfírio Xavier, Yonara de Gouveia Cordeiro, Pâmela Almeida Alexandre, Pedro Ratto Lisboa Pires, Bruno H. Saranholi, Edson R. Silva, Susanne Müller, Heidge Fukumasu
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-019-52049-0

Characterisation of proguanylin expressing cells in the intestine – evidence for constitutive luminal secretion
Cited by: 8
Author(s): Florent Serge Dye, Pierre Larraufie, Richard G. Kay, Tamana Darwish, Juraj Rievaj, Deborah A. Goldspink, Claire L Meek, Stephen Middleton, Richard Hardwick, Geoffrey Roberts, Jennifer Percival-Alwyn, T. Owens Vaughan, Franco Ferraro, Benjamin Challis, Stephen O’Rahilly, Maria Groves, Fiona M. Gribble, Frank Reimann
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pgen.1007409

TGFβ signaling limits lineage plasticity in prostate cancer
Cited by: 8
Author(s): Yi Hao, Srikala Raghavan, Karolina Pietrzak, Tiffany A. Melhuish, Yu Han, Stephen D. Turner, Henry F. Frierson, David Wotton
Software Mentions: 1
Published: about 8 years ago

10.1038/s41598-019-54651-8

Trim33 (Tif1γ) is not required for skeletal muscle development or regeneration but suppresses cholecystokinin expression
Cited by: 3
Author(s): Cassie Parks, Katherine Pak, Iago Pinal‐Fernandez, Wilson Huang, Assia Derfoul, Andrew L. Mammen
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-019-51522-0

A clinicohaematological prognostic model for nasal-type natural killer/T-cell lymphoma: A multicenter study
Cited by: 13
Author(s): Kang Hai Tan, Burton K. Chia, Jing Quan Lim, Lay Poh Khoo, Chee Leong Cheng, Louis Tan, Eileen Poon, Nagavalli Somasundaram, Mohamad Farid, Tiffany Tang, Miriam Tao, Daryl Ming Zhe Cheah, Yurike Laurensia, Jane Wan Lu Pang, Tongxing Song, Jian Tan, Dachuan Huang, Seok Jin Kim, Won Seog Kim, Choon Kiat Ong, Soon Thye Lim, Jason Yongsheng Chan
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pgen.1008460

A missense mutation in SNRPE linked to non-syndromal microcephaly interferes with U snRNP assembly and pre-mRNA splicing
Cited by: 17
Author(s): Tao Chen, Bin Zhang, Thomas Ziegenhals, Archana Bairavasundaram Prusty, Sebastian Fröhler, Clemens Grimm, Yuhui Hu, Bernhard Schaefke, Liang Fang, Min Zhang, Nadine Kraemer, Angela M. Kaindl, Utz Fischer, Wei Chen
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-019-51094-z

Experimental challenge with bovine respiratory syncytial virus in dairy calves: bronchial lymph node transcriptome response
Cited by: 22
Author(s): Dayle Johnston, Bernadette Earley, Matthew S. McCabe, Ken Lemon, Catherine Duffy, Michael McMenamy, S. L. Cosby, JaeWoo Kim, Gordon Blackshields, Taylor Jf, Sinéad M. Waters
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-019-55291-8

Synergistic Effects of Hyperandrogenemia and Obesogenic Western-style Diet on Transcription and DNA Methylation in Visceral Adipose Tissue of Nonhuman Primates
Cited by: 12
Author(s): Lucia Carbone, Brett A. Davis, Suzanne S. Fei, Ashley E. White, Kimberly A. Nevonen, Diana Takahashi, Amanda Vinson, Cadence True, Charles T. Roberts, Oleg Varlamov
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-019-50088-1

Upregulation of the chromatin remodeler HELLS is mediated by YAP1 in Sonic Hedgehog Medulloblastoma
Cited by: 18
Author(s): M. Hope Robinson, Victor Maximov, Shoeb Lallani, Hamza Farooq, Michael D. Taylor, Renee Read, Anna Marie Kenney
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pgen.1007206

Deep sequencing of HBV pre-S region reveals high heterogeneity of HBV genotypes and associations of word pattern frequencies with HCC
Cited by: 7
Author(s): Xin Bai, Ji An An Jia, Meng Fang, Shipeng Chen, Xiaotao Liang, Shanfeng Zhu, Shuqin Zhang, Jianfeng Feng, Fengzhu Sun, Chunfang Gao
Software Mentions: 1
Published: over 8 years ago

10.3390/ijms22158322

Efficient Generation of Neural Stem Cells from Embryonic Stem Cells Using a Three-Dimensional Differentiation System
Cited by: 5
Author(s): Sang Hoon Yoon, Mi-Rae Bae, Hyeonwoo La, Hyuk Song, Kwonho Hong, Jeong Tae
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-019-56240-1

No metagenomic evidence of tumorigenic viruses in cancers from a selected cohort of immunosuppressed subjects
Cited by: 2
Author(s): Nunzia Passaro, Andrea Casagrande, Matteo Chiara, Bruno Fosso, Caterina Manzari, Anna Maria D’Erchia, Samuele Iesari, Francesco Pisani, Antonio Famulari, P. Tulissi, Stefania Mastrosimone, Maria Cristina Maresca, Giuseppe Mercante, Giuseppe Spriano, Giacomo Corrado, Enrico Vizza, Anna Rosa Garbuglia, Maria Rosaria Capobianchi, Carla Mottini, Alessandra Cenci, Marco Tartaglia, Alessandro Nanni Costa, Graziano Pesole, Marco Crescenzi
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-019-56401-2

A novel Arabidopsis pathosystem reveals cooperation of multiple hormonal response-pathways in host resistance against the global crop destroyer Macrophomina phaseolina
Cited by: 13
Author(s): Mercedes Schroeder, Yan Liu, Miwa Shirai, Natalie Alsalek, Tokuji Tsuchiya, Philip A. Roberts, Thomas Eulgem
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pgen.1007496

Specification of Drosophila neuropeptidergic neurons by the splicing component brr2
Cited by: 3
Author(s): Ignacio Monedero Cobeta, Caroline Bivik Stadler, Li Jin, Peng Yu, Stefan Thor, Jonathan Benito‐Sipos
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41598-019-56645-y

A genetic characterization of Korean waxy maize (Zea mays L.) landraces having flowering time variation by RNA sequencing
Cited by: 0
Author(s): Gibum Yi, Hosub Shin, Seung Hwa Yu, Jeong Eun Park, Taegu Kang, Jin Hoe Huh
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms22168359

TRPM2 Oxidation Activates Two Distinct Potassium Channels in Melanoma Cells through Intracellular Calcium Increase
Cited by: 28
Author(s): Loretta Ferrera, Raffaella Barbieri, Cristiana Picco, Paolo Zuccolini, Alessia Remigante, Sara Bertelli, Maria Rita Fumagalli, Giovanni Zifarelli, Caterina A. M. La Porta, Paola Gavazzo, Michael Pusch
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.pgen.1007587

Transcription factor ASCL2 is required for development of the glycogen trophoblast cell lineage
Cited by: 19
Author(s): Aaron B. Bogutz, Rosemary Oh-McGinnis, Karen J. Jacob, Rita Ho-Lau, Ting Gu, Marina Gertsenstein, András Nagy, Louis Lefebvre
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41598-019-49894-4

A mass spectrometry-based assay using metabolic labeling to rapidly monitor chromatin accessibility of modified histone proteins
Cited by: 31
Author(s): Simone Sidoli, Mariana Lopes, Peder J. Lund, Naomi Goldman, Maria Fasolino, Mariel Coradin, Katarzyna Kulej, Natarajan V. Bhanu, Golnaz Vahedi, Benjamin A. Garcia
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41597-021-00908-9

The transcriptome of wild-type and immortalized corneal epithelial cells
Cited by: 4
Author(s): Kai Furuya, Tao Wu, Ai Orimoto, Eriko Sugano, Hiroshi Tomita, Tohru Kiyono, Takahiro Kurose, Yoshihiro Takai, T. Fukuda
Software Mentions: 1
Published: about 5 years ago

10.1038/s41597-020-00576-1

De novo transcriptome assembly of cold stressed clones of the hexaploid Sequoia sempervirens (D. Don) Endl.
Cited by: 6
Author(s): Natalie Breidenbach, Vadim V. Sharov, Oliver Gailing, Konstantin V. Krutovsky
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-020-57717-0

Transcriptional trajectories of anther development provide candidates for engineering male fertility in sorghum
Cited by: 17
Author(s): Namrata Dhaka, Kushagra Krishnan, Manu Kandpal, Ira Vashisht, Madan Pal, Manoj K. Sharma, Rita Sharma
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-020-57907-w

Integrated miRNA-/mRNA-Seq of the Habenulo-Interpeduncular Circuit During Acute Nicotine Withdrawal
Cited by: 9
Author(s): Alison P. Casserly, Junko Tsuji, Rubing Zhao-Shea, Corey Smith, Susanna Molas, Andrew R. Tapper, Zhiping Weng, Paul Gardner
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-020-57755-8

Mechanical forces induce an asthma gene signature in healthy airway epithelial cells
Cited by: 30
Author(s): Ayşe Kılıç, Asher Ameli, Jin‐Ah Park, Alvin T. Kho, Kelan G. Tantisira, Marc Santolini, Feixiong Cheng, Joseph F. Mitchel, Maureen McGill, Michael J. O’Sullivan, Margherita De Marzio, Amitabh Sharma, Scott H. Randell, Jeffrey M. Drazen, Jeffrey J. Fredberg, Scott T. Weiss
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms22168385

LINC01133 Inhibits Invasion and Promotes Proliferation in an Endometriosis Epithelial Cell Line
Cited by: 2
Author(s): Iveta Yotova, Quanah J. Hudson, Florian M. Pauler, Katharina Proestling, Isabella Haslinger, Lorenz Kuessel, Alexandra Perricos, H Husslein, René Wenzl
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-020-58715-y

Robust RNA-Seq of aRNA-amplified single cell material collected by patch clamp
Cited by: 6
Author(s): Jae Mun Kim, Adrian Camarena, Christopher Walker, Ming Yi Lin, Victoria Wolseley, Tade Souaiaia, Matthew E. Thornton, Brendan H. Grubbs, Robert H. Chow, Oleg V. Evgrafov, James A. Knowles
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-020-59184-z

Genetic Analysis of Agronomic Traits and Grain Iron and Zinc Concentrations in a Doubled Haploid Population of Rice (Oryza sativa L.)
Cited by: 42
Author(s): Mark Ian C. Calayugan, Andrea Kariza Formantes, Amery Amparado, Gwen Iris Descalsota-Empleo, Chau Thanh Nha, Mary Ann Inabangan-Asilo, Zin Mar Swe, Jose E. Hernandez, Teresita H. Borromeo, Antonio G. Lalusin, Merlyn S. Mendioro, Ma. Genaleen Q. Diaz, Celia B. Dela Viña, Russell Reinke, B. P. Mallikarjuna Swamy
Software Mentions: 1
Published: over 6 years ago

10.1038/s41597-020-0558-8

Meta-analytic approach for transcriptome profiling of herpes simplex virus type 1
Cited by: 7
Author(s): Dóra Tombácz, Gábor Torma, Gábor Gulyás, Norbert Moldován, M Snyder, Zsolt Boldogkői
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-020-59213-x

Gene expression in immortalized versus primary isolated cardiac endothelial cells
Cited by: 7
Author(s): Lisa Deng, Luisa Pollmeier, Qian Zhou, Stella Bergemann, Christoph Bode, Lutz Hein, Achim Lother
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pgen.1009320

Lhx6 regulates canonical Wnt signaling to control the fate of mesenchymal progenitor cells during mouse molar root patterning
Cited by: 8
Author(s): Jinzhi He, Junjun Jing, Jifan Feng, Xia Han, Yuan Yuan, Tingwei Guo, Fei Pei, Yuanyuan Ma, Courtney Cho, Thach-Vu Ho, Yang Chai
Software Mentions: 1
Published: over 5 years ago

10.1038/s41597-019-0226-z

Transcriptomic profiling of sesame during waterlogging and recovery
Cited by: 15
Author(s): Komivi Dossa, Jun You, Linhai Wang, Yanxin Zhang, Donghua Li, Rong Zhou, Jingyin Yu, Xin Wei, Xiaodong Zhu, Shiyang Jiang, Yuan Gao, Marie Ali Mmadi
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-020-59853-z

Activated FGF2 signaling pathway in tumor vasculature is essential for acquired resistance to anti-VEGF therapy
Cited by: 31
Author(s): Kenji Ichikawa, Saori Watanabe Miyano, Yukinori Minoshima, Junji Matsui, Yasuhiro Funahashi
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-020-59812-8

Chromosome 19 microRNA cluster enhances cell reprogramming by inhibiting epithelial-to-mesenchymal transition
Cited by: 40
Author(s): Ezinne Francess Mong, Ying Yang, Kemal M. Akat, John Canfield, Jeffrey VanWye, John H. Lockhart, John C.M. Tsibris, Frederick Schatz, Charles J. Lockwood, Thomas Tuschl, Umit A. Kayisli, Hana Totary-Jain
Software Mentions: 1
Published: over 6 years ago

10.1038/s41597-019-0022-9

Multi-year whole-blood transcriptome data for the study of onset and progression of Parkinson’s Disease
Cited by: 7
Author(s): Matthew Valentine, Kosuke Hashimoto, Takeshi Fukuhara, Sachio Saiki, Keiichi Ishikawa, Nobutaka Hattori
Software Mentions: 1
Published: over 7 years ago

10.1016/j.xpro.2020.100126

Introducing the Stem Cell ASCL2 Reporter STAR into Intestinal Organoids
Cited by: 3
Author(s): Maria C. Heinz, Koen C. Oost, Hugo J.G. Snippert
Software Mentions: 1
Published: over 5 years ago

10.1186/s12284-017-0161-6

Association Mapping of Yield and Yield-related Traits Under Reproductive Stage Drought Stress in Rice (Oryza sativa L.)
Cited by: 64
Author(s): B. P. Mallikarjuna Swamy, Noraziyah Abd Aziz Shamsudin, Site Noorzuraini Abd Rahman, Ramil Mauleon, R Wickneswari V Ratnam, Ma Teresa Sta Cruz, Arvind Kumar
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-020-60271-4

HDAC6, modulated by miR-206, promotes endometrial cancer progression through the PTEN/AKT/mTOR pathway
Cited by: 24
Author(s): Yawen Zheng, Xiaohui Yang, Chunyan Wang, Shuo Zhang, Zhong Lin Wang, Meng Li, Yuanjian Wang, Xiaojie Wang
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-020-60610-5

Anxiolytic Drug FGIN-1-27 Ameliorates Autoimmunity by Metabolic Reprogramming of Pathogenic Th17 Cells
Cited by: 8
Author(s): Anju Singh, Myagmarjav Dashnyam, Bryan Chim, Thelma M. Escobar, Andrés E. Dulcey, Xin Hu, Kelli Wilson, Prasanthi P. Koganti, Camille A. Spinner, Xin Xu, Ajit Jadhav, Noel Southall, Juan Marugán, Vimal Selvaraj, Vanja Lazarevic, Stefan A. Muljo, Marc Ferrer
Software Mentions: 1
Published: over 6 years ago

10.1590/0104-1169.3523.2537

Cultural adaptation, content validity and inter-rater reliability of the "STAR Skin Tear Classification System"
Cited by: 27
Author(s): Kelly Cristina Strazzieri-Pulido, Vera Lúcia Conceição de Gouveia Santos, Keryln Carville
Software Mentions: 1
Published: over 11 years ago

10.1038/s41598-020-60346-2

miR-142 induces accumulation of reactive oxygen species (ROS) by inhibiting pexophagy in aged bone marrow mesenchymal stem cells
Cited by: 19
Author(s): Kei Houri, Tatsufumi Mori, Yuta Onodera, Tomoyuki Tsujimoto, Toshiyuki Takehara, Shinichi Nakao, Takeshi Teramura, Kanji Fukuda
Software Mentions: 1
Published: over 6 years ago

10.1186/s12977-020-00535-z

Interferon regulatory factor 4 as a therapeutic target in adult T-cell leukemia lymphoma
Cited by: 8
Author(s): Daniel A. Rauch, Sydney L. Olson, John C. S. Harding, Hemalatha Sundaramoorthi, Youngsoo Kim, Tianyuan Zhou, A. Robert MacLeod, Grant A. Challen, Lee Ratner
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-020-60688-x

Identification of a combination of transcription factors that synergistically increases endothelial cell barrier resistance
Cited by: 35
Author(s): Filip Roudnicky, Bo Kyoung Kim, Yanjun Lan, Roland Schmucki, Verena Küppers, Klaus Christensen, Martin Gräf, Christoph Patsch, Mark Burcin, Claas A. Meyer, Peter D. Westenskow, Chad A. Cowan
Software Mentions: 1
Published: over 6 years ago

10.1186/s12977-016-0267-8

Characterization of novel Bovine Leukemia Virus (BLV) antisense transcripts by deep sequencing reveals constitutive expression in tumors and transcriptional interaction with viral microRNAs
Cited by: 57
Author(s): Keith Durkin, Nicolas Rosewick, Maria Artesi, Vincent Hahaut, Philip Griebel, Natasa Arsic, Arsène Burny, Michel Georges, Anne Van den Broeke
Software Mentions: 1
Published: about 10 years ago

10.1038/s41598-020-61495-0

COMPSRA: a COMprehensive Platform for Small RNA-Seq data Analysis
Cited by: 15
Author(s): Li Jiang, Alvin T. Kho, Robert Chase, Lorena Pantano, Leanna Farnam, Sami S. Amr, Kelan G. Tantisira
Software Mentions: 1
Published: over 6 years ago

10.1186/s12931-021-01854-1

The “can do, do do” concept in individuals with chronic obstructive pulmonary disease: an exploration of psychological mechanisms
Cited by: 10
Author(s): Johannes Carl, Konrad Schultz, Thomas Janssens, Andreas von Leupoldt, Klaus Pfeifer, Wolfgang Geidl
Software Mentions: 1
Published: almost 5 years ago

10.1186/s12931-018-0778-z

Altered lung biology of healthy never smokers following acute inhalation of E-cigarettes
Cited by: 89
Author(s): Michelle R. Staudt, Jacqueline Salit, Robert J. Kaner, Charleen Hollmann, Ronald G. Crystal
Software Mentions: 1
Published: about 8 years ago

10.1186/s12958-021-00715-2

Whole blood RNA sequencing reveals a differential transcriptomic profile associated with cervical insufficiency: a pilot study
Cited by: 4
Author(s): Ga Hyun Son, So Yeon Choi, Yeon-Ji Ju, Keun-Young Lee, Jae Jun Lee, Ji-Eun Song, Youngmi Kim, Sung Taek Park
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pgen.1003714

A Shift to Organismal Stress Resistance in Programmed Cell Death Mutants
Cited by: 36
Author(s): Meredith E. Judy, Ayumi Nakamura, Anne Huang, Harli Grant, Helen McCurdy, Kurt F. Weiberth, Fuying Gao, Giovanni Coppola, Cynthia Kenyon, Aimee W. Kao
Software Mentions: 1
Published: almost 13 years ago

10.1186/s12938-019-0720-8

3D kernel-density stochastic model for more personalized glycaemic control: development and in-silico validation
Cited by: 15
Author(s): Vincent Uyttendaele, Jennifer L. Knopp, Shaun Davidson, Thomas Desaive, Balázs Benyó, Geoffrey M. Shaw, J. Geoffrey Chase
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-020-62320-4

Dietary intake of bioactive ingredients impacts liver and adipose tissue transcriptomes in a porcine model of prepubertal early obesity
Cited by: 4
Author(s): María Ballester, Raquel Quintanilla, Francisco Ortega, José Serrano, Anna Cassanyé, Marı́a Rodrı́guez-Palmero, José Antonio Moreno Muñoz, Manuel Portero‐Otín, J. Tibau
Software Mentions: 1
Published: over 6 years ago

10.1098/rsos.200625

Transcriptome analysis identified long non-coding RNAs involved in the adaption of yak to high-altitude environments
Cited by: 6
Author(s): Jinwei Xin, Zhixin Chai, Chengfu Zhang, Yumei Yang, Qiang Zhang, Yong Zhu, Hanwen Cao, Cidan Yang Ji, Jincheng Zhong, Qiumei Ji
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pgen.1006453

Investigating Conservation of the Cell-Cycle-Regulated Transcriptional Program in the Fungal Pathogen, Cryptococcus neoformans
Cited by: 38
Author(s): Christina M. Kelliher, Adam R. Leman, Crystal S Sierra, Steven B. Haase
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pgen.1008744

Coordinate genomic association of transcription factors controlled by an imported quorum sensing peptide in Cryptococcus neoformans
Cited by: 9
Author(s): Diana Summers, Daniela S. Perry, Beiduo Rao, Hiten D. Madhani
Software Mentions: 1
Published: almost 6 years ago

10.3390/plants9020152

Exploring the Link between Photosystem II Assembly and Translation of the Chloroplast psbA mRNA
Cited by: 23
Author(s): Prakitchai Chotewutmontri, Rosalind Williams‐Carrier, Alice Barkan
Software Mentions: 1
Published: over 6 years ago

10.1080/15476286.2020.1827619

SID-2 negatively regulates development likely independent of nutritional dsRNA uptake
Cited by: 2
Author(s): Fabian Braukmann, David Jordan, Benjamin H. Jenkins, Albert Koulman, Eric A. Miska
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-020-62801-6

RNA-Seq of human whole blood: Evaluation of globin RNA depletion on Ribo-Zero library method
Cited by: 21
Author(s): Christina A. Harrington, Suzanne S. Fei, Jessica Minnier, Lucia Carbone, Robert P. Searles, Brett A. Davis, Kimberly Ogle, Stephen R. Planck, James T. Rosenbaum, Dongseok Choi
Software Mentions: 1
Published: about 6 years ago

10.3390/plants9020280

The Analysis of the Editing Defects in the dyw2 Mutant Provides New Clues for the Prediction of RNA Targets of Arabidopsis E+-Class PPR Proteins
Cited by: 18
Author(s): Bastien Malbert, Matthias Burger, Mauricio Lopez‐Obando, Kévin Baudry, Alexandra Launay‐Avon, Barbara Härtel, Daniil Verbitskiy, Anja Jörg, Richard Berthomé, Claire Lurin, Mizuki Takenaka, Étienne Delannoy
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-020-63563-x

RNA Sequence Analyses throughout the Course of Mouse Cardiac Laminopathy Identify Differentially Expressed Genes for Cell Cycle Control and Mitochondrial Function
Cited by: 6
Author(s): Zhili Shao, Wonshill Koh, Ying Ni, Wei Li, Brendan Agatisa-Boyle, Daria Merkurjev, W.H. Wilson Tang
Software Mentions: 1
Published: about 6 years ago

10.1007/s11136-018-2039-5

Quality of life and service satisfaction in outpatients with severe or non-severe mental illness diagnoses
Cited by: 14
Author(s): Marian Ådnanes, Jorid Kalseth, Solveig Osborg Ose, Torleif Ruud, Jorun Rugkåsa, Stephen Puntis
Software Mentions: 1
Published: over 7 years ago

10.1186/s12938-020-00771-6

Risk and reward: extending stochastic glycaemic control intervals to reduce workload
Cited by: 4
Author(s): Vincent Uyttendaele, Jennifer L. Knopp, Geoffrey M. Shaw, Thomas Desaive, J. Geoffrey Chase
Software Mentions: 1
Published: about 6 years ago

10.1007/s13238-016-0254-9

The key role of CYC2 during meiosis in Tetrahymena thermophila
Cited by: 11
Author(s): Qianlan Xu, Ruo–Yu Wang, Amr R. Ghanam, Guangwu Yan, Wei Miao, Xiaoyuan Song
Software Mentions: 1
Published: over 10 years ago

10.2196/13415

Web-Based Interventions to Improve Mental Health in Home Caregivers of People With Dementia: Meta-Analysis
Cited by: 49
Author(s): Yinan Zhao, Hui Feng, Mingyue Hu, Hongxing Hu, Hui Li, Hongting Ning, Huijing Chen, Lulu Liao, Linlin Peng
Software Mentions: 1
Published: about 7 years ago

10.1111/tpj.14661

<scp>d</scp>‐Lactic acid secreted by<i>Chlorella fusca</i>primes pattern‐triggered immunity against<i>Pseudomonas syringae</i>in Arabidopsis
Cited by: 14
Author(s): Sang-Moo Lee, Seon‐Kyu Kim, Nakyeong Lee, Chi‐Yong Ahn, Choong‐Min Ryu
Software Mentions: 1
Published: over 6 years ago

10.1002/pros.23823

<i>TMPRSS2‐ERG</i> fusions linked to prostate cancer racial health disparities: A focus on Africa
Cited by: 23
Author(s): James Blackburn, Stefano Vecchiarelli, Erin E. Heyer, Sean Patrick, Ruth J. Lyons, Weerachai Jaratlerdsiri, Smit van Zyl, M. S. Bornman, Tim R. Mercer, Vanessa M. Hayes
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-020-64305-9

Anti-inflammatory effects of α-MSH through p-CREB expression in sarcoidosis like granuloma model
Cited by: 22
Author(s): Chongxu Zhang, Stephanie Chery, Aaron Lazerson, Norman H. Altman, Robert M. Jackson, G.E. Holt, Michael Campos, Andrew Â. V. Schally, Mehdi Mirsaeidi
Software Mentions: 1
Published: about 6 years ago

10.1073/pnas.2100694118

Longer or shorter spines: Reciprocal trait evolution in stickleback via triallelic regulatory changes in <i>Stanniocalcin2a</i>
Cited by: 14
Author(s): Garrett A. Roberts Kingman, David Lee, Felicity C. Jones, Danielle Desmet, Michael A. Bell, David M. Kingsley
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-020-64300-0

Detecting CSSLs and yield QTLs with additive, epistatic and QTL×environment interaction effects from Oryza sativa × O. nivara IRGC81832 cross
Cited by: 25
Author(s): Divya Balakrishnan, S. Malathi, Venkateswara Rao Yadavalli, Krishnam Raju Addanki, Sukumar Mesapogu, Kavitha Beerelli, Sarla Neelamraju
Software Mentions: 1
Published: about 6 years ago

10.1073/pnas.2026605118

An introgressed gene causes meiotic drive in<i>Neurospora sitophila</i>
Cited by: 22
Author(s): Jesper Svedberg, Aaron A. Vogan, Nicholas A. Rhoades, Dilini Sarmarajeewa, David J. Jacobson, Martin Lascoux, Thomas M. Hammond, Hanna Johannesson
Software Mentions: 1
Published: about 5 years ago

10.1073/pnas.1908252116

Extracellular RNA in a single droplet of human serum reflects physiologic and disease states
Cited by: 43
Author(s): Zixu Zhou, Qiuyang Wu, Zhangming Yan, Haizi Zheng, Chien-Ju Chen, Yuan Liu, Zhijie Qi, Riccardo Calandrelli, Zhe Chen, Shu Chien, Hua Su, Sheng Zhong
Software Mentions: 1
Published: almost 7 years ago

10.2196/13599

Using Technology to Facilitate Fidelity Assessments: The Tele-STAR Caregiver Intervention
Cited by: 9
Author(s): Allison Lindauer, Glenise McKenzie, David LaFazia, Loriann McNeill, Katherine Mincks, Natasha Spoden, Marcella Myers, Nora Mattek, Linda Teri
Software Mentions: 1
Published: about 7 years ago

10.1073/pnas.1907031116

An influenza virus-triggered SUMO switch orchestrates co-opted endogenous retroviruses to stimulate host antiviral immunity
Cited by: 73
Author(s): Nora Schmidt, Patricia Domingues, Filip Gołębiowski, Corinna Patzina, Michael H. Tatham, Ronald T. Hay, Benjamin G. Hale
Software Mentions: 1
Published: almost 7 years ago

10.1073/pnas.1721434116

Microglia are effector cells of CD47-SIRPα antiphagocytic axis disruption against glioblastoma
Cited by: 166
Author(s): Gregor Hütter, Johanna Theruvath, Claus Moritz Graef, Michael Zhang, Matthew K. Schoen, Eva Maria Manz, Mariko L. Bennett, Andrew Olson, Tej D. Azad, Rahul Sinha, Carmel T. Chan, Suzana Assad Kahn, Sharareh Gholamin, Christy Wilson, Gerald A. Grant, Joy Q. He, Irving L. Weissman, Siddhartha Mitra, Samuel Cheshier
Software Mentions: 1
Published: over 7 years ago

10.3390/ijms21144849

Dual Leucine Zipper Kinase Is Constitutively Active in the Adult Mouse Brain and Has Both Stress-Induced and Homeostatic Functions
Cited by: 7
Author(s): Sunil Goodwani, Celia G. Fernandez, Paul Acton, Virginie Buggia-Prévot, Morgan McReynolds, Jiacheng Ma, Cheng Hu, Mary E. Hamby, Yongying Jiang, Le Kang, Michael Soth, Philip Jones, William J. Ray
Software Mentions: 1
Published: almost 6 years ago

10.1089/pop.2017.0109

Need for Comprehensive Health Care Quality Measures for Older Adults
Cited by: 16
Author(s): MacLeodStephanie, SchwebkeKay, HawkinsKevin, RuizJoann, HooEmma, S YehCharlotte
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41598-020-65911-3

Genome-wide transcriptome profiling of ex-vivo precision-cut slices from human pancreatic ductal adenocarcinoma
Cited by: 13
Author(s): Mehran Ghaderi, Carlos Fernández Moro, Soledad Pouso Elduayen, Emilie Hultin, Caroline S. Verbeke, Mikael Björnstedt, Joakim Dillner
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-020-66458-z

The PPAR α/γ Agonist Saroglitazar Improves Insulin Resistance and Steatohepatitis in a Diet Induced Animal Model of Nonalcoholic Fatty Liver Disease
Cited by: 62
Author(s): Divya P. Kumar, Rebecca Caffrey, Jonathon Marioneaux, Prasanna K. Santhekadur, Madhavi Bhat, Cristina Alonso, Srinivas Koduru, Binu K. Philip, Mukul Jain, Suresh Giri, Pierre Bédossa, Arun J. Sanyal
Software Mentions: 1
Published: about 6 years ago

10.3390/polym13152503

Kinetical Study, Thermo-Mechanical Characteristics and Recyclability of Epoxidized Camelina Oil Cured with Antagonist Structure (Aliphatic/Aromatic) or Functionality (Acid/Amine) Hardeners
Cited by: 10
Author(s): Chiara Di Mauro, Aratz Genua, Alice Mija
Software Mentions: 1
Published: almost 5 years ago

10.3390/polym12092136

3D Printed Silicone Meniscus Implants: Influence of the 3D Printing Process on Properties of Silicone Implants
Cited by: 29
Author(s): Eric Luis, Houwen Matthew Pan, Anil K. Bastola, Ram Bajpai, Swee Leong Sing, Juha Song, Wai Yee Yeong
Software Mentions: 1
Published: almost 6 years ago

10.3390/polym12081642

Synthesis and Characterisation of Acrylic Resin-Al Powder Composites Suitable for Additive Manufacturing
Cited by: 4
Author(s): J. J. Relinque, Ismael Romero‐Ocaña, Francisco J. Navas‐Martos, Francisco Delgado, Manuel Domí­nguez, S. I. Molina
Software Mentions: 1
Published: almost 6 years ago

10.3390/polym12051148

Epoxy-Anhydride Vitrimers from Aminoglycidyl Resins with High Glass Transition Temperature and Efficient Stress Relaxation
Cited by: 26
Author(s): Michael Giebler, Clemens Sperling, Simon Kaiser, Ivica Đuretek, Sandra Schlögl
Software Mentions: 1
Published: about 6 years ago

10.1002/pld3.174

In Arabidopsis hybrids and Hybrid Mimics, up‐regulation of cell wall biogenesis is associated with the increased plant size
Cited by: 7
Author(s): Li Wang, Li Min Wu, Ian K. Greaves, Elizabeth S. Dennis, W. James Peacock
Software Mentions: 1
Published: over 6 years ago

10.3390/polym12020467

Methods for Determining the Thermal Transfer in Phase-Changing Materials (PCMs)
Cited by: 2
Author(s): Vasile Bendic, Dan Dobrotă, Ionel Simion, Emilia Bălan, Nicoleta-Elisabeta Pascu, Dana Iuliana Tilina
Software Mentions: 1
Published: over 6 years ago

10.1111/pbi.13600

The pan‐genome of the cultivated soybean (PanSoy) reveals an extraordinarily conserved gene content
Cited by: 36
Author(s): Davoud Torkamaneh, Marc‐André Lemay, François Belzile
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.ppat.1009908

Human parainfluenza virus type 1 regulates cholesterol biosynthesis and establishes quiescent infection in human airway cells
Cited by: 1
Author(s): Yoichi Kurebayashi, Shringkhala Bajimaya, Masahiro Watanabe, Nicholas Lim, Michael M. Lutz, Megan M Dunagan, Toru Takimoto
Software Mentions: 1
Published: almost 5 years ago

10.1186/s13059-019-1895-9

deSALT: fast and accurate long transcriptomic read alignment with de Bruijn graph-based index
Cited by: 38
Author(s): Bo Liu, Yadong Liu, Junyi Li, Hongzhe Guo, Tianyi Zang, Yadong Wang
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms21155420

DNA Methyltransferase 1 (DNMT1) Acts on Neurodegeneration by Modulating Proteostasis-Relevant Intracellular Processes
Cited by: 12
Author(s): Cathrin Bayer, Georg Pitschelatow, Nina Hannemann, Jenice Linde, Julia Reichard, Daniel Pensold, Geraldine Zimmer-Bensch
Software Mentions: 1
Published: almost 6 years ago

10.1186/s40814-017-0182-3

Pilot parallel randomised controlled trial of protective socks against usual care to reduce skin tears in high risk people: ‘STOPCUTS’
Cited by: 4
Author(s): Roy Powell, Christopher Hayward, Caroline L. Snelgrove, Kathleen Polverino, Linda Park, Rajeev Kumar Chauhan, Philip Evans, Rachel Byford, Carolyn Charman, Christopher Foy, Colin Pritchard, Andrew Kingsley
Software Mentions: 1
Published: over 8 years ago

10.1186/s13059-019-1896-8

CTCF modulates allele-specific sub-TAD organization and imprinted gene activity at the mouse Dlk1-Dio3 and Igf2-H19 domains
Cited by: 49
Author(s): David Llères, Benoît Moindrot, Rakesh Pathak, Vincent Piras, Mélody Matelot, Benoît Pignard, Alice Marchand, Mallory Poncelet, Aurélien Perrin, Virgile Tellier, Robert Feil, Daan Noordermeer
Software Mentions: 1
Published: over 6 years ago

10.2196/jmir.7564

Web-Based Interventions to Improve Mental Health, General Caregiving Outcomes, and General Health for Informal Caregivers of Adults With Chronic Conditions Living in the Community: Rapid Evidence Review
Cited by: 100
Author(s): Jenny Ploeg, Maureen Markle‐Reid, Ruta Valaitis, Carrie McAiney, Wendy Duggleby, Amy Bartholomew, Diana Sherifali
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-020-67742-8

Network of clinically-relevant lncRNAs-mRNAs associated with prognosis of hepatocellular carcinoma patients
Cited by: 10
Author(s): Li Min Lim, Yu Jin, Henry Yang, Alexander Yaw Fui Chung, Brian K. P. Goh, Pierce Kah‐Hoe Chow, Chung Yip Chan, William K. Blanks, Peng Chung Cheow, Ser Yee Lee, Tony Kiat-Hon Lim, Samuel S. Chong, London Lucien Peng Jin Ooi, Caroline Lee
Software Mentions: 1
Published: about 6 years ago

10.1186/1475-925X-11-58

Second pilot trials of the STAR-Liege protocol for tight glycemic control in critically ill patients
Cited by: 15
Author(s): Sophie Penning, Aaron J. Le Compte, Paul Massion, Katherine T. Moorhead, Christopher G. Pretty, Jean‐Charles Preiser, Geoffrey M. Shaw, Fatanah M. Suhaimi, Thomas Desaive, J. Geoffrey Chase
Software Mentions: 1
Published: over 14 years ago

10.1038/s41598-020-68431-2

Alternative splicing of flowering time gene FT is associated with halving of time to flowering in coconut
Cited by: 10
Author(s): Wei Xia, Rui Liu, Jun Zhang, Annaliese S. Mason, Zhiying Li, Shufang Gong, Yazhu Zhong, Yajing Dou, Xuan Sun, Hang Fan, Yong Xiao
Software Mentions: 1
Published: almost 6 years ago

10.14814/phy2.14333

Impact of sex on diabetic nephropathy and the renal transcriptome in UNx db/db C57BLKS mice
Cited by: 11
Author(s): Frederikke E. Sembach, Lisbeth Nielsen Fink, Thea T. Johansen, Brandon B. Boland, Thomas Secher, Sebastian T. Thrane, Jens Nielsen, Keld Fosgerau, Niels Vrang, Jacob Jelsing, T. Pedersen, Morten Østergaard
Software Mentions: 1
Published: over 6 years ago

10.1186/s13059-019-1818-9

Global impact of somatic structural variation on the DNA methylome of human cancers
Cited by: 23
Author(s): Yiqun Zhang, Lixing Yang, Melanie Kucherlapati, Angela Hadjipanayis, Angeliki Pantazi, Christopher A. Bristow, Eunjung Alice Lee, Harshad S. Mahadeshwar, Jie Hu, Jianhua Zhang, Sahil Seth, Semin Lee, Xiaojia Ren, Xingzhi Song, Huandong Sun, Jonathan G. Seidman, Lovelace J. Luquette, Ruibin Xi, Lynda Chin, Alexei Protopopov, Peter J. Park, Raju Kucherlapati, Chad J. Creighton
Software Mentions: 1
Published: over 6 years ago

10.1186/s13059-018-1587-x

Downregulation of RdDM during strawberry fruit ripening
Cited by: 112
Author(s): Jingfei Cheng, Qingfeng Niu, Bo Zhang, Kunsong Chen, Rui Yang, Jian‐Kang Zhu, Yijing Zhang, Zhaobo Lang
Software Mentions: 1
Published: over 7 years ago

10.1186/s13059-018-1535-9

SeqOthello: querying RNA-seq experiments at scale
Cited by: 34
Author(s): Ye Yu, Jinpeng Liu, Xinan Liu, Yi Zhang, Eamonn Magner, Erik Lehnert, Chen Qian, Jinze Liu
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-020-68944-w

A G-quadruplex-binding compound shows potent activity in human gemcitabine-resistant pancreatic cancer cells
Cited by: 15
Author(s): Ahmed A. Ahmed, Chiara Marchetti, Stephan A. Ohnmacht, Stephen Neidle
Software Mentions: 1
Published: almost 6 years ago

10.1186/s13059-018-1496-z

Single-cell RNAseq for the study of isoforms—how is that possible?
Cited by: 93
Author(s): Ángeles Arzalluz-Luque, Ana Conesa
Software Mentions: 1
Published: almost 8 years ago

10.1186/s13059-018-1446-9

SINC-seq: correlation of transient gene expressions between nucleus and cytoplasm reflects single-cell physiology
Cited by: 43
Author(s): Mahmoud N. Abdelmoez, Kei Iida, Yusuke Oguchi, Hidekazu Nishikii, Ryuji Yokokawa, Hidetoshi Kotera, Shunsuke Uemura, Juan G. Santiago, Hirofumi Shintaku
Software Mentions: 1
Published: about 8 years ago