10.1186/1471-2105-7-165

Unraveling condition specific gene transcriptional regulatory networks in Saccharomyces cerevisiae
Cited by: 28
Author(s): Hyunsoo Kim, William Hu, Yuval Kluger
Software Mentions: 1
Published: over 20 years ago

10.18632/oncotarget.23641

Transcriptomes define distinct subgroups of salivary gland adenoid cystic carcinoma with different driver mutations and outcomes
Cited by: 33
Author(s): Candace A. Frerich, Kathryn J. Brayer, Brandon Painter, Huining Kang, Yoshitsugu Mitani, Adel K. El‐Naggar, Scott A. Ness
Software Mentions: 1
Published: over 8 years ago

10.1093/hmg/ddaa034

Mice carrying an analogous heterozygous dynamin 2 K562E mutation that causes neuropathy in humans develop predominant characteristics of a primary myopathy
Cited by: 5
Author(s): Jorge A. Pereira, Joanne Gerber, Monica Ghidinelli, Daniel Gerber, Luigi Tortola, Andrea Ommer, Sven Bachofner, Francesco Santarella, Elisa Tinelli, Shuo Lin, Markus A. Rüegg, Manfred Köpf, Klaus V. Toyka, Ueli Suter
Software Mentions: 1
Published: over 6 years ago

10.1093/hmg/ddw001

Keratin 12 missense mutation induces the unfolded protein response and apoptosis in Meesmann epithelial corneal dystrophy
Cited by: 18
Author(s): E. Allen, David Courtney, Sarah D. Atkinson, Johnny Moore, Laura Mairs, Ebbe Toftgaard Poulsen, Davide Schiroli, Eleonora Maurizi, Christian Callebaut, Robyn P. Hickerson, John James, Helen Murgatroyd, Frances J.D. Smith, Carrie MacEwen, Jan J. Enghild, M. Andrew Nesbit, Deena M. Leslie Pedrioli, Whi McLean, Carrie Moore
Software Mentions: 1
Published: over 10 years ago

10.1186/1471-2105-8-382

XSTREAM: A practical algorithm for identification and architecture modeling of tandem repeats in protein sequences
Cited by: 139
Author(s): Aaron M. Newman, J. B. Cooper
Software Mentions: 1
Published: almost 19 years ago

10.18632/oncotarget.24134

The ERβ4 variant induces transformation of the normal breast mammary epithelial cell line MCF-10A; the ERβ variants ERβ2 and ERβ5 increase aggressiveness of TNBC by regulation of hypoxic signaling
Cited by: 14
Author(s): Michelle Faria, Samaneh Karami, Sergio Granados-Principal, Prasenjit Dey, Akanksha Verma, Dong Soon Choi, Olivier Elemento, Tasneem Bawa-Khalfe, Jenny C. Chang, Anders Ström, Jan Åke Gustafsson
Software Mentions: 1
Published: over 8 years ago

10.1186/s12859-015-0654-5

Red: an intelligent, rapid, accurate tool for detecting repeats de-novo on the genomic scale
Cited by: 122
Author(s): Hani Z. Girgis
Software Mentions: 1
Published: about 11 years ago

10.1186/s12859-018-2436-3

ASGAL: aligning RNA-Seq data to a splicing graph to detect novel alternative splicing events
Cited by: 25
Author(s): Luca Denti, Raffaella Rizzi, Stefano Beretta, Gianluca Della Vedova, Marco Previtali, Paola Bonizzoni
Software Mentions: 1
Published: almost 8 years ago

10.1016/j.isprsjprs.2020.08.027

Empirical validation of photon recollision probability in single crowns of tree seedlings
Cited by: 6
Author(s): Aarne Hovi, Petri Forsström, Giulia Ghielmetti, Michael E. Schaepman, Miina Rautiainen
Software Mentions: 1
Published: almost 6 years ago

10.1107/S2052252517014658

Thermomechanical effect in molecular crystals: the role of halogen-bonding interactions
Cited by: 15
Author(s): Sudhir Mittapalli, D. Sravanakumar Perumalla, Jagadeesh Babu Nanubolu, Ashwini Nangia
Software Mentions: 1
Published: almost 9 years ago

10.1107/S2052252520001335

On the mechanism of solid-state phase transitions in molecular crystals – the role of cooperative motion in (quasi)racemic linear amino acids
Cited by: 25
Author(s): Mireille M. H. Smets, Emma Kalkman, Annika M. Krieger, Paul Tinnemans, Hugo Meekes, E. Vlieg, H. M. Cuppen
Software Mentions: 1
Published: over 6 years ago

10.1107/S2052252517004043

Mechanochemical synthesis of<i>N</i>-salicylideneaniline: thermosalient effect of polymorphic crystals
Cited by: 30
Author(s): Sudhir Mittapalli, D. Sravanakumar Perumalla, Ashwini Nangia
Software Mentions: 1
Published: over 9 years ago

10.1186/s12859-020-03593-4

RainDrop: Rapid activation matrix computation for droplet-based single-cell RNA-seq reads
Cited by: 5
Author(s): Stefan Niebler, André C. Müller, Thomas Hankeln, Bertil Schmidt
Software Mentions: 1
Published: about 6 years ago

10.18632/oncotarget.24511

Mandatory role of HMGA1 in human airway epithelial normal differentiation and post-injury regeneration
Cited by: 7
Author(s): Haijun Zhang, Jing Yang, Matthew S. Walters, Michelle R. Staudt, Yael Strulovici-Barel, Jacqueline Salit, Jason G. Mezey, Philip L. Leopold, Ronald G. Crystal
Software Mentions: 1
Published: over 8 years ago

10.1186/s13046-019-1307-8

HMGA1 promotes breast cancer angiogenesis supporting the stability, nuclear localization and transcriptional activity of FOXM1
Cited by: 54
Author(s): Rossella Zanin, Silvia Pegoraro, Gloria Ros, Yari Ciani, Silvano Piazza, Fleur Bossi, Roberta Bulla, Cristina Zennaro, Federica Tonon, Dejan Lazarevic, Elia Stupka, Riccardo Sgarra, Guidalberto Manfioletti
Software Mentions: 1
Published: about 7 years ago

10.1186/s13046-021-02025-2

Common and mutation specific phenotypes of KRAS and BRAF mutations in colorectal cancer cells revealed by integrative -omics analysis
Cited by: 9
Author(s): Snehangshu Kundu, Muhammad Akhtar-Ali, Niklas Handin, Louis P. Conway, Verónica Rendo, Per Artursson, Liqun He, Daniel Globisch, Tobias Sjöblom
Software Mentions: 1
Published: about 5 years ago

10.1084/jem.20180870

Secreted PD-L1 variants mediate resistance to PD-L1 blockade therapy in non–small cell lung cancer
Cited by: 153
Author(s): Bin Gong, Kazuma Kiyotani, Seiji Sakata, Seiji Nagano, Shun Kumehara, Satoko Baba, Benjamin Besse, Noriko Yanagitani, Luc Friboulet, Makoto Nishio, Kengo Takeuchi, Hiroshi Kawamoto, Naoya Fujita, Ryohei Katayama
Software Mentions: 1
Published: over 7 years ago

10.1084/jem.20181394

Lamin B1 loss promotes lung cancer development and metastasis by epigenetic derepression of RET
Cited by: 42
Author(s): Yanhan Jia, Joaquim S. L. Vong, Alina Asafova, Boyan K. Garvalov, Luca Caputo, Julio Cordero, Avinash Singh, Thomas Boettger, Stefan Günther, Ludger Fink, Till Acker, Guillermo Barreto, Werner Seeger, Thomas Braun, Rajkumar Savai, Gergana Dobreva
Software Mentions: 1
Published: over 7 years ago

10.1186/s12859-020-03869-9

TruNeo: an integrated pipeline improves personalized true tumor neoantigen identification
Cited by: 12
Author(s): Yuchen Tang, Yu Wang, Hua Wang, Miao Li, Linmin Peng, Guochao Wei, Yixing Zhang, Li Jin, Zhibo Gao
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12859-019-2786-5

Ryūtō: network-flow based transcriptome reconstruction
Cited by: 20
Author(s): Thomas Gatter, Peter F. Stadler
Software Mentions: 1
Published: over 7 years ago

10.4274/jtgga.galenos.2021.2020.0187

Hey Siri! Perform a type 3 hysterectomy. Please watch out for the ureter!” What is autonomous surgery and what are the latest developments?
Cited by: 4
Author(s): İsmail Burak Gültekin, Emine Karabük, Mehmet Köse
Software Mentions: 1
Published: over 5 years ago

10.5713/ajas.19.0097

Analysis of allele-specific expression using RNA-seq of the Korean native pig and Landrace reciprocal cross
Cited by: 3
Author(s): Byeongyong Ahn, Mi Hyun Choi, Joori Yum, In-Cheol Cho, Jin‐Hoi Kim, Chankyu Park
Software Mentions: 1
Published: almost 7 years ago

10.1155/2013/849363

Motion Detection in Diffusion MRI via Online ODF Estimation
Cited by: 9
Author(s): Emmanuel Caruyer, Iman Aganj, Christophe Lenglet, Guillermo Sapiro, Rachid Deriche
Software Mentions: 1
Published: over 13 years ago

10.3390/jof5020053

Aspergillus flavus NRRL 35739, a Poor Biocontrol Agent, May Have Increased Relative Expression of Stress Response Genes
Cited by: 10
Author(s): Kayla K. Pennerman, Guohua Yin, Joan W. Bennett, Sui-Sheng T. Hua
Software Mentions: 1
Published: about 7 years ago

10.3390/jof7060409

Global Transcriptional Response of Aspergillus niger to Blocked Active Citrate Export through Deletion of the Exporter Gene
Cited by: 6
Author(s): Thanaporn Laothanachareon, Lyon Bruinsma, Bart Nijsse, Tom Schonewille, María Suárez-Diez, Juan Antonio Tamayo-Ramos, Vítor A. P. Martins dos Santos, Peter J. Schaap
Software Mentions: 1
Published: over 5 years ago

10.1186/s43141-020-00037-7

Effective multi-functional biotechnological applications of protease/keratinase enzyme produced by new Egyptian isolate (Laceyella sacchari YNDH)
Cited by: 10
Author(s): Doaa A. Goda, Ahmad R. Bassiouny, Nihad M. Abdel Monem, Nadia A. Soliman, Yasser R. Abdel-Fattah
Software Mentions: 1
Published: about 6 years ago

10.1155/2019/3160275

Genetic Mapping and Validation of Quantitative Trait Loci (QTL) for the Grain Appearance and Quality Traits in Rice (<i>Oryza sativa</i> L.) by Using Recombinant Inbred Line (RIL) Population
Cited by: 23
Author(s): Leila Bazrkar-Khatibani, Barat Ali Fakheri, Maryam Hosseini-Chaleshtori, Anumalla Mahender, N. Mahdinejad, Jauhar Ali
Software Mentions: 1
Published: over 7 years ago

10.1186/s13075-018-1631-y

Methods for high-dimensional analysis of cells dissociated from cryopreserved synovial tissue
Cited by: 82
Author(s): Laura T. Donlin, Deepak A. Rao, Kevin Wei, Kamil Slowikowski, Mandy J. McGeachy, Jason D. Turner, Nida Meednu, Fumitaka Mizoguchi, María Gutiérrez‐Arcelus, David Lieb, Joshua Keegan, Kaylin Muskat, Joshua Hillman, Cristina Rozo, Edd Ricker, Thomas Eisenhaure, Shuqiang Li, Edward P. Browne, Adam Chicoine, Danielle Sutherby, Akiko Noma, Accelerating Medicines Partnership, Chad Nusbaum, Stephen Kelly, Alessandra B. Pernis, Lionel B. Ivashkiv, Susan M. Goodman, William H. Robinson, Paul J. Utz, James A. Lederer, Ellen M. Gravallese, Brendan F. Boyce, Nir Hacohen, Costantino Pitzalis, Peter K. Gregersen, Gary S. Firestein, Soumya Raychaudhuri, Larry W. Moreland, V. Michael Holers, Vivian P. Bykerk, Andrew Filer, David L. Boyle, Michael B. Brenner, Jennifer H. Anolik
Software Mentions: 1
Published: about 8 years ago

10.1016/j.jhepr.2021.100281

A human liver chimeric mouse model for non-alcoholic fatty liver disease
Cited by: 23
Author(s): Beatrice Bissig-Choisat, Michèle Auger, Barry Zorman, Scott A. Ochsner, Mercedes Barzi, Xavier Legras, Diane Yang, Malgorzata Borowiak, Adam Dean, Robert Brian York, Nhu Thao Nguyen Galván, John A. Goss, William R. Lagor, David D. Moore, David E. Cohen, Neil J. McKenna, Pavel Sumazin, Karl‐Dimiter Bissig
Software Mentions: 1
Published: over 5 years ago

10.1186/s13045-017-0515-y

Transcriptome sequencing in pediatric acute lymphoblastic leukemia identifies fusion genes associated with distinct DNA methylation profiles
Cited by: 32
Author(s): Yanara Marincevic-Zuniga, Johan Dahlberg, Stefan Nilsson, Amanda Raine, Sara Nystedt, Carl Mårten Lindqvist, Eva Berglund, Jonas Abrahamsson, Lucia Cavelier, Erik Forestier, Mats Heyman, Gudmar Lönnerholm, Jessica Nordlund, Ann‐Christine Syvänen
Software Mentions: 1
Published: about 9 years ago

10.1186/s13045-020-00974-3

The altered transcriptome of pediatric myelodysplastic syndrome revealed by RNA sequencing
Cited by: 3
Author(s): Lorena Zubović, Silvano Piazza, Toma Tebaldi, Luca Cozzuto, Giuliana Palazzo, Viktoryia Sidarovich, Veronica De Sanctis, Roberto Bertorelli, Tim Lammens, Mattias Hofmans, Barbara De Moerloose, Julia Ponomarenko, Martina Pigazzi, Riccardo Masetti, Cristina Mecucci, Giuseppe Basso, Paolo Macchi
Software Mentions: 1
Published: almost 6 years ago

10.1186/s13045-021-01072-8

CLK1/SRSF5 pathway induces aberrant exon skipping of METTL14 and Cyclin L2 and promotes growth and metastasis of pancreatic cancer
Cited by: 42
Author(s): Shi Chen, Can Yang, Zuwei Wang, Jianfei Hu, Jingjing Pan, Cheng-Yu Liao, Jiaqiang Zhang, Jiang-Zhi Chen, Yi Huang, Long Huang, Qimin Zhan, Yuan Tian, Baiyong Shen, Yaodong Wang
Software Mentions: 1
Published: over 5 years ago

10.1016/j.ijpara.2016.03.004

Identification of new markers for the Schistosoma mansoni vitelline lineage
Cited by: 53
Author(s): Jipeng Wang, James J. Collins
Software Mentions: 1
Published: over 10 years ago

10.4049/jimmunol.2000372

Zebrafish IL-4–like Cytokines and IL-10 Suppress Inflammation but Only IL-10 Is Essential for Gill Homeostasis
Cited by: 27
Author(s): Federica Bottiglione, Christopher Dee, Robert Lea, Leo Zeef, Andrew P. Badrock, Madina Wane, Laurence Bugeon, Margaret J. Dallman, Judith E. Allen, Adam Hurlstone
Software Mentions: 1
Published: about 6 years ago

10.9734/INDJ/2016/26203

Examining the Impact of Patient-Reported Hope for Improvement and Patient Satisfaction with Clinician/Treatment on the Outcome of Major Depressive Disorder Treatment
Cited by: 1
Author(s): Waguih William IsHak, Jennice Vilhauer, Richard Kwock, Fan Wu, Sherif H. Gohar, Katherine L. Collison, Sasha Thomas, Lancer Naghdechi, David Elashoff
Software Mentions: 1
Published: over 10 years ago

10.1167/iovs.19-26930

IPSC-Derived Corneal Endothelial-like Cells Act as an Appropriate Model System to Assess the Impact of <i>SLC4A11</i> Variants on Pre-mRNA Splicing
Cited by: 12
Author(s): Kristýna Brejchová, Ľubica Ďuďáková, Pavlína Skalická, Robert Dobrovolný, Petr Mašek, Martina Putzová, Mariya Moosajee, Stephen Tuft, Alice E. Davidson, Petra Lišková
Software Mentions: 1
Published: about 7 years ago

10.1161/ATVBAHA.118.312190

Intussusceptive Vascular Remodeling Precedes Pathological Neovascularization
Cited by: 19
Author(s): Zaheer Ali, Anthony Mukwaya, Antje Biesemeier, Maria Ntzouni, Daniel Ramsköld, Sarantis Giatrellis, Parviz Mammadzada, Renhai Cao, Anton Lennikov, Michele Marass, Claudia Gerri, Camilla Hildesjö, Michael R. Taylor, Qiaolin Deng, Beatrice Bourghardt Peebo, Luis del Peso, Anders Kvanta, Rickard Sandberg, Ulrich Schraermeyer, Helder André, John F. Steffensen, Neil Lagali, Yihai Cao, Julianna Kele, Lasse D. Jensen
Software Mentions: 1
Published: about 7 years ago

10.2196/24724

Business Models of eHealth Interventions to Support Informal Caregivers of People With Dementia in the Netherlands: Analysis of Case Studies
Cited by: 6
Author(s): Hannah Liane Christie, Lizzy Boots, Ivo Hermans, Mark Govers, Huibert Tange, Frans R.J. Verhey, Marjolein E. de Vugt
Software Mentions: 1
Published: over 5 years ago

10.2196/formative.9083

A Web-Based Platform for People With Memory Problems and Their Caregivers (CAREGIVERSPRO-MMD): Mixed-Methods Evaluation of Usability
Cited by: 8
Author(s): Evi Zafeiridi, Kevin Paulson, Rosie Dunn, Emma Wolverson, Caroline White, Jonathan Thorpe, Marco Antomarini, Francesca Cesaroni, Francesca Scocchera, Isabelle Landrin-Dutot, Laëtitia Malherbe, Hendi Lingiah, Marie Bérard, Xavier Gironès, M. Quintana, Ulises Cortés, Cristian Barrué, Àtia Cortés, Ioannis Paliokas, Konstantinos Votis, Dimitrios Tzovaras
Software Mentions: 1
Published: over 8 years ago

10.2196/27736

Nursing Students’ Perceptions about Effective Pedagogy: Netnographic Analysis
Cited by: 4
Author(s): Jennie C. De Gagné, Paula D Koppel, Hyeyoung K Park, Allen Cadavero, Eunji Cho, Sharron Rushton, Sandra S Yamane, Kim Manturuk, Dukyoo Jung
Software Mentions: 1
Published: about 5 years ago

10.3390/ijerph120404076

Community-Based Research as a Mechanism to Reduce Environmental Health Disparities in American Indian and Alaska Native Communities
Cited by: 44
Author(s): Cynthia Agumanu McOliver, Anne K. Camper, John Doyle, Margaret J. Eggers, Tim Ford, Mary Anne Lila, James Berner, Larry Campbell, Jamie Donatuto
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0254709

Comparative transcriptome analysis of unripe and ripe banana (cv. Nendran) unraveling genes involved in ripening and other related processes
Cited by: 5
Author(s): Karambir Kaur, Praveen Awasthi, Siddharth Tiwari
Software Mentions: 1
Published: about 5 years ago

10.3390/ijerph15122899

Sistas Taking a Stand for Breast Cancer Research (STAR) Study: A Community-Based Participatory Genetic Research Study to Enhance Participation and Breast Cancer Equity among African American Women in Memphis, TN
Cited by: 7
Author(s): Alana Smith, Gregory A. Vidal, Elizabeth Pritchard, Ryan Blue, Michelle Y. Martin, LaShanta Rice, Gwendolynn Brown, Athena Starlard‐Davenport
Software Mentions: 1
Published: almost 8 years ago

10.3390/ijerph16234730

Distribution of Refractive Errors among Healthy Infants and Young Children between the Age of 6 to 36 Months in Kuala Lumpur, Malaysia—A Pilot Study
Cited by: 7
Author(s): Arifah Nur Yahya, Sharanjeet Sharanjeet-Kaur, Saadah Mohamed Akhir
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0134958

A Biochemical Approach to Understand the Pathogenesis of Advanced Pulmonary Arterial Hypertension: Metabolomic Profiles of Arginine, Sphingosine-1-Phosphate, and Heme of Human Lung
Cited by: 38
Author(s): Yidan Zhao, Lei Chu, Kathleen Watson Lin, Elise Granton, Li Yin, Jiming Peng, Michael Hsin, Licun Wu, Amy Yu, Thomas K. Waddell, Shaf Keshavjee, John Granton, Marc de Perrot
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0129183

Weighted Statistical Binning: Enabling Statistically Consistent Genome-Scale Phylogenetic Analyses
Cited by: 104
Author(s): Shamsuzzoha Bayzid, Siavash Mirarab, Bastien Boussau, Tandy Warnow
Software Mentions: 1
Published: over 11 years ago

10.3390/ijerph17238845

Effects of an Educational Program for Professional Caregivers on Behavioral Alterations in Nursing Home Residents: Pilot Study
Cited by: 4
Author(s): Carolina Pinazo-Clapés, Sacramento Pinazo Hernandis, Alicia Sales
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0177340

Metagenomic sequencing complements routine diagnostics in identifying viral pathogens in lung transplant recipients with unknown etiology of respiratory infection
Cited by: 52
Author(s): Dagmara W. Lewandowska, Peter W. Schreiber, Macé M. Schuurmans, Bettina Ruehe, Osvaldo Zagordi, Cornelia Bayard, Michael Greiner, Fabienne D. Geissberger, Riccarda Capaul, Andrea Zbinden, Jürg Böni, Christian Benden, Nicolas J. Mueller, Alexandra Trkola, Michael Huber
Software Mentions: 1
Published: over 9 years ago

10.1107/S2053229618017084

The solid-state structure of the β-blocker metoprolol: a combined experimental and <i>in silico</i> investigation
Cited by: 11
Author(s): Patrizia Rossi, Paola Paoli, L. Chelazzi, Luca Conti, Andrea Bencini
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0229030

Interaction of field realistic doses of clothianidin and Varroa destructor parasitism on adult honey bee (Apis mellifera L.) health and neural gene expression, and antagonistic effects on differentially expressed genes
Cited by: 26
Author(s): Nuria Morfin, Paul H. Goodwin, Ernesto Guzmán-Novoa
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0221109

Antibiotic treatment of Chlamydia-induced cystitis in the koala is linked to expression of key inflammatory genes in reactive oxygen pathways
Cited by: 5
Author(s): Samuel Phillips, Bonnie Chaban, Ammar Aziz, Wendy Bergen, Rosemary Booth, Michael Pyne, Peter Timms
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pone.0078586

Rapid Kill—Novel Endodontic Sealer and Enterococcus faecalis
Cited by: 27
Author(s): Nurit Beyth, Dana Kesler Shvero, Nathan Zaltsman, Yael Houri‐Haddad, Itzhak Abramovitz, Michael Perez Davidi, Ervin I. Weiss
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0141214

Identification and Characterization of Circular RNAs As a New Class of Putative Biomarkers in Human Blood
Cited by: 503
Author(s): Sebastian Memczak, Panagiotis Papavasileiou, Oliver Peters, Nikolaus Rajewsky
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0174436

Computational identifying and characterizing circular RNAs and their associated genes in hepatocellular carcinoma
Cited by: 16
Author(s): Yan Li, Yongcheng Dong, Ziyan Huang, Qifan Kuang, Yiming Wu, Yizhou Li, Menglong Li
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0100153

The Relationship between Therapeutic Alliance and Service User Satisfaction in Mental Health Inpatient Wards and Crisis House Alternatives: A Cross-Sectional Study
Cited by: 62
Author(s): Angela Sweeney, Sarah Fahmy, Fiona Nolan, Nicola Morant, Zoë Fox, Brynmor Lloyd‐Evans, David Osborn, Emma Burgess, Helen Gilburt, Rose McCabe, Mike Slade, Sonia Johnson
Software Mentions: 1
Published: about 12 years ago

10.3390/ijerph18158035

Using a 24 h Activity Recall (STAR-24) to Describe Activity in Adolescent Boys in New Zealand: Comparisons between a Sample Collected before, and a Sample Collected during the COVID-19 Lockdown
Cited by: 5
Author(s): Meredith C. Peddie, Tessa Scott, Jillian J. Haszard
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0152405

Subtype-Selective Small Molecule Inhibitors Reveal a Fundamental Role for Nav1.7 in Nociceptor Electrogenesis, Axonal Conduction and Presynaptic Release
Cited by: 144
Author(s): Aristos J. Alexandrou, Adam R. Brown, Mark L. Chapman, Mark Estacion, Jamie Turner, Malgorzata A. Mis, Anna Wilbrey, Elizabeth C. Payne, Alex Gutteridge, Peter Cox, Rachel Doyle, David Printzenhoff, Zhixin Lin, Brian E. Marron, Christopher W. West, Nigel A. Swain, Richard Storer, Paul A. Stupple, Neil A. Castle, James A. Hounshell, Mirko Rivara, Andrew D. Randall, Sulayman D. Dib‐Hajj, Douglas S. Krafte, Stephen G. Waxman, Manoj K. Patel, Richard P. Butt, Edward B. Stevens
Software Mentions: 1
Published: over 10 years ago

10.2196/24736

Examining a Digital Health Approach for Advancing Schizophrenia Illness Self-Management and Provider Engagement: Protocol for a Feasibility Trial
Cited by: 4
Author(s): Sean A. Kidd, Kwame McKenzie, Wei Wang, Sacha Agrawal, Aristotle N. Voineskos
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0195142

Surprisal analysis of genome-wide transcript profiling identifies differentially expressed genes and pathways associated with four growth conditions in the microalga Chlamydomonas
Cited by: 6
Author(s): Kenny A. Bogaert, Sheeba Santhini Manoharan-Basil, Emilie Perez, R. D. Levine, Françoise Remacle, Claire Remacle
Software Mentions: 1
Published: over 8 years ago

10.2196/27668

STAR Duodecim eHealth Tool to Recognize Chronic Disease Risk Factors and Change Unhealthy Lifestyle Choices Among the Long-Term Unemployed: Protocol for a Mixed Methods Validation Study
Cited by: 1
Author(s): Henna Kuhlberg, Sari Kujala, Iiris Hörhammer, Tuomas Koskela
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0179567

A sorghum (Sorghum bicolor) mutant with altered carbon isotope ratio
Cited by: 4
Author(s): Govinda Rizal, Shanta Karki, Vivek Thakur, Samart Wanchana, Hugo Alonso-Cantabrana, Jacque Dionora, J. E. Sheehy, Robert T. Furbank, Susanne von Caemmerer, W. Paul Quick
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0236882

Mutations in m6A consensus motifs are suppressed in the m6A modified genes in human cancer cells
Cited by: 3
Author(s): Mingzi An, Wang Hui-yun, Yingqian Zhu
Software Mentions: 1
Published: about 6 years ago

10.1186/s40425-019-0621-1

Prognostic impact of immune gene expression signature and tumor infiltrating immune cells in localized clear cell renal cell carcinoma
Cited by: 104
Author(s): Pooja Ghatalia, Jennifer B. Gordetsky, Fengshen Kuo, Essel Dulaimi, Kathy Q. Cai, Karthik Devarajan, Sejong Bae, Gurudatta Naik, Timothy A. Chan, Robert G. Uzzo, A. Ari Hakimi, Guru Sonpavde, Elizabeth R. Plimack
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0197105

Rapamycin-independent IGF2 expression in Tsc2-null mouse embryo fibroblasts and human lymphangioleiomyomatosis cells
Cited by: 7
Author(s): Blanca E. Himes, Kseniya Obraztsova, Lurong Lian, Maya Shumyatcher, Ryan W. Rue, Elena N. Atochina‐Vasserman, Stella K. Hur, Marisa S. Bartolomei, Jilly F. Evans, Vera P. Krymskaya
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0183939

Characterization of lincRNA expression in the human retinal pigment epithelium and differentiated induced pluripotent stem cells
Cited by: 11
Author(s): Elizabeth Au, Rosario Fernández-Godino, Tadeusz J. Kaczynksi, Maria E Sousa, Michael H. Farkas
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0130228

A Modelling Framework to Assess the Effect of Pressures on River Abiotic Habitat Conditions and Biota
Cited by: 19
Author(s): Jochem Kail, Björn Guse, Johannes Radinger, Maria Schröder, Jens Kiesel, Maarten G. Kleinhans, F. Schuurman, Nicola Fohrer, Daniel Hering, Christian Wolter
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0127871

A Novel Chitin Binding Crayfish Molar Tooth Protein with Elasticity Properties
Cited by: 9
Author(s): Jenny Tynyakov, Shmuel Bentov, Shai Abehsera, Isam Khalaila, Rivka Manor, Lihie Katzir Abilevich, Shalva Weil, Eliahu D. Aflalo, Amir Sagi
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0204241

MYB1 transcription factor is a candidate responsible for red root skin in radish (Raphanus sativus L.)
Cited by: 17
Author(s): Gibum Yi, June-Sik Kim, Jeong Eun Park, Hosub Shin, Seung Hwa Yu, Suhyung Park, Jin Hoe Huh
Software Mentions: 1
Published: almost 8 years ago

10.1007/s00705-021-05138-3

Two novel bornaviruses identified in colubrid and viperid snakes
Cited by: 7
Author(s): Florian Pfaff, Dennis Rubbenstroth
Software Mentions: 1
Published: over 5 years ago

10.1186/s40425-019-0796-5

A new synthetic toll-like receptor 1/2 ligand is an efficient adjuvant for peptide vaccination in a human volunteer
Cited by: 33
Author(s): Hans Georg Rammensee, Karl Heinz Wiesmüller, P. Anoop Chandran, Henning Zelba, Elisa Rusch, Cécile Gouttefangeas, Daniel J. Kowalewski, Moreno Di Marco, Sebastian P. Haen, Juliane S. Walz, Yamel Cardona Gloria, Johanna Bödder, Jill Marie Schertel, Antje Tunger, Luise Müller, Maximilian Kießler, Rebekka Wehner, Marc Schmitz, Meike Jakobi, Nicole Schneiderhan‐Marra, Reinhild Klein, Karoline Laske, Kerstin Artzner, Linus Backert, Heiko Schuster, Johannes Schwenck, Alexander N.R. Weber, Bernd J. Pichler, Manfred Kneilling, Christian la Fougère, Stephan Forchhammer, Gisela Metzler, Jürgen Bauer, Benjamin Weide, Wilfried Schippert, Stefan Stevanović, Markus Löffler
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0129845

A Metagenomic Survey of Viral Abundance and Diversity in Mosquitoes from Hubei Province
Cited by: 49
Author(s): Chengying Shi, Yi Liu, Xiaomin Hu, Jinfeng Xiong, Bo Zhang, Zhiming Yuan
Software Mentions: 1
Published: over 11 years ago

10.1186/s40425-019-0758-y

Immunogenicity of prostate cancer is augmented by BET bromodomain inhibition
Cited by: 49
Author(s): Wendy Mao, Ali Ghasemzadeh, Zachary T. Freeman, Aleksandar Z. Obradovic, Matthew G. Chaimowitz, Thomas R. Nirschl, Emily McKiernan, Srinivasan Yegnasubramanian, Charles G. Drake
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0224062

Correction: A comparative study of RNA-Seq and microarray data analysis on the two examples of rectal-cancer patients and Burkitt Lymphoma cells
Cited by: 0
Author(s): Alexander Wolff, Michaela Bayerlová, Jochen Gaedcke, Dieter Kube, Tim Beißbarth
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0124043

The Impact of Legal Coercion on the Therapeutic Relationship in Adult Schizophrenia Patients
Cited by: 26
Author(s): Friederike Höfer, Elmar Habermeyer, Andreas Mokros, Steffen Lau, Stefanie Kristiane Gairing
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0218381

Transcriptome analysis identified aberrant gene expression in pollen developmental pathways leading to CGMS in cotton (Gossypium hirsutum L.)
Cited by: 20
Author(s): Rasmieh Hamid, Hassan Marashi, R. S. Tomar, Saeid Malekzadeh-Shafaroudi, Pritesh Sabara
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pone.0232200

Developmental alterations in the transcriptome of three distinct rodent models of schizophrenia
Cited by: 8
Author(s): Jennifer J. Donegan, Angela M. Boley, Jeremy P. Glenn, Melanie A. Carless, Daniel J. Lodge
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0213685

Optimisation of laboratory methods for whole transcriptomic RNA analyses in human left ventricular biopsies and blood samples of clinical relevance
Cited by: 9
Author(s): K L Ford, Maryam Anwar, Rachael Heys, Eltayeb Mohamed Ahmed, Massimo Caputo, Laurence Gamé, Barnaby C Reeves, Prakash P Punjabi, Gianni Angelini, Enrico Petretto, Costanza Emanueli
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0250149

Estimating COVID-19 cases in Makkah region of Saudi Arabia: Space-time ARIMA modeling
Cited by: 25
Author(s): Fuad A. Awwad, Moataz A. Mohamoud, Mohamed R. Abonazel
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0232946

RefShannon: A genome-guided transcriptome assembler using sparse flow decomposition
Cited by: 11
Author(s): Shunfu Mao, Lior Pachter, David Tse, Sreeram Kannan
Software Mentions: 1
Published: over 6 years ago

10.1186/s40425-019-0612-2

Discovery of a novel natural killer cell line with distinct immunostimulatory and proliferative potential as an alternative platform for cancer immunotherapy
Cited by: 15
Author(s): Hyun Gul Yang, Moon Cheol Kang, Tae Yoon Kim, Injung Hwang, Hyun Tak Jin, Young Chul Sung, Ki‐Seong Eom, Sae Won Kim
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0222774

Simultaneous transcriptome analysis of oil palm clones and Phytophthora palmivora reveals oil palm defense strategies
Cited by: 4
Author(s): Kelly Johanna Avila-Mendez, Ávila Rodrigo, Leonardo Araque, Hernán Mauricio Romero
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0021998

Variability Measures of Positive Random Variables
Cited by: 13
Author(s): Lubomir Kostal, Petr Lánský, Ondřej Pokora
Software Mentions: 1
Published: about 15 years ago

10.1371/journal.pone.0169614

Expression of Calgranulin Genes S100A8, S100A9 and S100A12 Is Modulated by n-3 PUFA during Inflammation in Adipose Tissue and Mononuclear Cells
Cited by: 22
Author(s): Rachana Shah, Chenyi Xue, Hanrui Zhang, Sony Tuteja, Mingyao Li, Muredach P. Reilly, Jane F. Ferguson
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0148230

The Genetic Architecture of Murine Glutathione Transferases
Cited by: 14
Author(s): Lu Lu, Ashutosh Kumar Pandey, M. Trevor Houseal, Megan K. Mulligan
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0147823

Chamber Specific Gene Expression Landscape of the Zebrafish Heart
Cited by: 23
Author(s): Amarjeet Singh, Ambily Sivadas, Ankit Sabharwal, Shamsudheen Karuthedath Vellarikal, Rijith Jayarajan, Ankit Verma, Shruti Kapoor, Adita Joshi, Vinod Scaria, Sridhar Sivasubbu
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0216934

Pharmacodynamic study of radium-223 in men with bone metastatic castration resistant prostate cancer
Cited by: 11
Author(s): Andrew J. Armstrong, Santosh Gupta, Patrick Healy, Gabor Kemeny, Beth Leith, Michael R. Zalutsky, Charles E. Spritzer, Catrin Davies, Colin Rothwell, Kathryn E. Ware, Jason A. Somarelli, Kris C. Wood, Thomas J. Ribar, Paraskevi Giannakakou, Jiaren Zhang, Drew G. Gerber, Monika Anand, Wen‐Chi Foo, Susan Halabi, Simon G. Gregory, Daniel J. George
Software Mentions: 1
Published: over 7 years ago

10.3390/antiox10060845

Inflammation and Oxidative Damage in Ischaemic Renal Disease
Cited by: 11
Author(s): Áine M. de Bhailís, Constantina Chrysochou, Philip A. Kalra
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0070724

Fine-Mapping, Gene Expression and Splicing Analysis of the Disease Associated LRRK2 Locus
Cited by: 45
Author(s): Daniah Trabzuni, Mina Ryten, Warren Emmett, Adaikalavan Ramasamy, Karl J. Lackner, Tanja Zeller, Robert Walker, Colin Smith, Patrick A. Lewis, Adamantios Mamais, Rohan de Silva, Jana Vandrovcová, Dena G. Hernandez, Michael A. Nalls, Manu Sharma, Sophie Garnier, Suzanne Lesage, Javier Simón‐Sánchez, Thomas Gasser, Peter Heutink, Alexis Brice, Andrew B. Singleton, Huaibin Cai, Eric E. Schadt, Nicholas W. Wood, Rina Bandopadhyay, Michael E. Weale, John Hardy, Vincent Plagnol
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0208446

K-edge subtraction imaging for coronary angiography with a compact synchrotron X-ray source
Cited by: 26
Author(s): Stephanie Kulpe, Martin Dierolf, Eva Braig, Benedikt Günther, Klaus Achterhold, Bernhard Gleich, Julia Herzen, Ernst J. Rummeny, Franz Pfeiffer, Daniela Pfeiffer
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0076570

Metabolism and Fatty Acid Profile in Fat and Lean Rainbow Trout Lines Fed with Vegetable Oil: Effect of Carbohydrates
Cited by: 52
Author(s): Biju Sam Kamalam, Françoise Médale, Laurence Larroquet, Généviève Corraze, Stéphane Panserat
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0185079

In vitro and in vivo effects of 2,4 diaminoquinazoline inhibitors of the decapping scavenger enzyme DcpS: Context-specific modulation of SMN transcript levels
Cited by: 16
Author(s): Jonathan J. Cherry, Christine J. DiDonato, Elliot J. Androphy, Alessandro Calò, Kyle Potter, Sara K. Custer, Sarah Du, Timothy L. Foley, Ariamala Gopalsamy, Emily J. Reedich, Susana Gordo, William Gordon, Natalie Hosea, Lyn H. Jones, Daniel Krizay, Gregory J. LaRosa, Hongxia Li, Sachin Mathur, Carol A. Menard, Paraj Patel, Rebeca Ramos-Zayas, Anne Rietz, Haojing Rong, Baohong Zhang, Michael A. Tones
Software Mentions: 1
Published: almost 9 years ago

10.3390/antibiotics8040207

How Can National Antimicrobial Stewardship Interventions in Primary Care Be Improved? A Stakeholder Consultation
Cited by: 16
Author(s): Aleksandra Borek, Marta Wanat, Anna Sallis, Diane Ashiru‐Oredope, Lou Atkins, Elizabeth Beech, Susan Hopkins, Leah Jones, Cliodna McNulty, Karen Shaw, Esther Taborn, Christopher Collett Butler, Tim Chadborn, Sarah Tonkin‐Crine
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41388-020-1161-3

Polycomb-mediated repression of EphrinA5 promotes growth and invasion of glioblastoma
Cited by: 15
Author(s): Barbara Ricci, Thomas O Millner, Nicola Pomella, Xinyu Zhang, Loredana Guglielmi, Sara Badodi, Dario Ceric, Carolina Gemma, Erica Cognolato, Ying Zhang, Sebastian Brandner, Michael R. Barnes, Silvia Marino
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0201554

iMapSplice: Alleviating reference bias through personalized RNA-seq alignment
Cited by: 7
Author(s): Xinan Liu, James N. MacLeod, Jinze Liu
Software Mentions: 1
Published: about 8 years ago

10.1038/s41388-020-1349-6

Deoxycholic acid modulates the progression of gallbladder cancer through N6-methyladenosine-dependent microRNA maturation
Cited by: 44
Author(s): Rongfu Lin, Ming Zhan, Linhua Yang, Hui Wang, Hui Shen, Shuai Huang, Xince Huang, Sunwang Xu, Zi-Jie Zhang, Weijian Li, Qiang Liu, Yongsheng Shi, Wei Chen, Jianxiu Yu, Jian Wang
Software Mentions: 1
Published: over 6 years ago

10.1308/003588412X13171221499865

The STAR score: a method for auditing clinical records
Cited by: 16
Author(s): Hussain Tuffaha, Tarik Amer, Parveen Jayia, Colin Bicknell, Niroshini Rajaretnam, Paul Ziprin
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0021915

Multiple Nuclear Gene Phylogenetic Analysis of the Evolution of Dioecy and Sex Chromosomes in the Genus Silene
Cited by: 31
Author(s): Gabriel Marais, Alan Forrest, Esther Kamau, Jos Käfer, Vincent Daubin, Deborah Charlesworth
Software Mentions: 1
Published: about 15 years ago

10.1038/s41419-021-03880-9

Effects of short-chain fatty acids in inhibiting HDAC and activating p38 MAPK are critical for promoting B10 cell generation and function
Cited by: 36
Author(s): Zhang‐Qi Feng, Yi Qiu, Yilian Huang, Hang Zou, Cheng Xiao, Qingru Niu, Aoxiang Luo, Jianbo Sun
Software Mentions: 1
Published: over 5 years ago

10.1038/cddis.2017.197

All-trans retinoic acid and arsenic trioxide fail to derepress the monocytic differentiation driver Irf8 in acute promyelocytic leukemia cells
Cited by: 14
Author(s): Xiang-Zhen Liu, Juan Chen, Shanhe Yu, Yan Li, Hong Guo, Jian-Min Dai, Wu Zhang, Jiang Zhu
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0215154

Mutational landscape of canine B-cell lymphoma profiled at single nucleotide resolution by RNA-seq
Cited by: 14
Author(s): Diana Giannuzzi, Laura Marconato, Luciano Cascione, S. Comazzi, Ramy Elgendy, Sara Pegolo, Alessio Cecchinato, Francesco Bertoni, Luca Aresu, Serena Ferraresso
Software Mentions: 1
Published: over 7 years ago