cran: STAR | Projects | Ecosyste.ms: Papers

10.1186/1471-2199-11-48

High-affinity consensus binding of target RNAs by the STAR/GSG proteins GLD-1, STAR-2 and Quaking
Cited by: 12
Author(s): Andrew B. Carmel, Jerry Wu, Katrina A. Lehmann-Blount, James R. Williamson
Software Mentions: 1
Published: almost 15 years ago

10.1186/s13059-016-1079-9

Extensive RNA editing and splicing increase immune self-representation diversity in medullary thymic epithelial cells
Cited by: 52
Author(s): Miri Danan-Gotthold, C. Guyon, Matthieu Giraud, Erez Y. Levanon, Jakub Abramson
Software Mentions: 1
Published: about 8 years ago

10.1186/s12874-019-0895-5

Using research networks to generate trustworthy qualitative public health research findings from multiple contexts
Cited by: 14
Author(s): Lot Nyirenda, Meghan Bruce Kumar, Sally Theobald, Malabika Sarker, Musonda Simwinga, Moses Kumwenda, Cheryl Johnson, Karin Hatzold, Elizabeth L. Corbett, Euphemia L Sibanda, Miriam Taegtmeyer
Software Mentions: 1
Published: almost 5 years ago

10.1186/s13059-016-0984-2

Comprehensive analysis of promoter-proximal RNA polymerase II pausing across mammalian cell types
Cited by: 66
Author(s): Daniel S. Day, Bing Zhang, Sean Stevens, Francesco Ferrari, Erica Larschan, Peter J. Park, William T. Pu
Software Mentions: 1
Published: over 8 years ago

10.1186/s12911-021-01476-z

What matters when exploring fidelity when using health IT to reduce disparities?
Cited by: 3
Author(s): Margaret A. Handley, Jenifer Landeros, Cindie Wu, Adriana Najmabadi, Daniela Vargas, Priyanka Athavale
Software Mentions: 1
Published: over 3 years ago

10.1186/s13059-016-0956-6

A transcriptome-based global map of signaling pathways in the ovarian cancer microenvironment associated with clinical outcome
Cited by: 81
Author(s): Silke Reinartz, Florian Finkernagel, Till Adhikary, Verena Rohnalter, Tim Schumann, Yvonne Schober, Wolfgang Andreas Nockher, Andrea Nist, Thorsten Stiewe, Julia M. Jansen, Uwe Wagner, Sabine Müller‐Brüsselbach, Rolf Müller
Software Mentions: 1
Published: over 8 years ago

10.1186/s12911-018-0680-0

SwissMTB: establishing comprehensive molecular cancer diagnostics in Swiss clinics
Cited by: 17
Author(s): Franziska Singer, Anja Irmisch, Nora C. Toussaint, Linda Grob, Jochen Singer, Thomas Thurnherr, Niko Beerenwinkel, Mitchell P. Levesque, Reinhard Dummer, Luca Quagliata, Sacha I. Rothschild, Andreas Wicki, Christian Beisel, Daniel J. Stekhoven
Software Mentions: 1
Published: about 6 years ago

10.1186/s13059-016-0917-0

The real cost of sequencing: scaling computation to keep pace with data generation
Cited by: 259
Author(s): Paul Muir, Shantao Li, Shaoke Lou, Daifeng Wang, Daniel Spakowicz, Jing Zhang, George M. Weinstock, Farren J. Isaacs, Joel Rozowsky, Mark Gerstein
Software Mentions: 1
Published: over 8 years ago

10.1007/s10439-015-1278-7

Hockey STAR: A Methodology for Assessing the Biomechanical Performance of Hockey Helmets
Cited by: 78
Author(s): Bethany Rowson, Steven Rowson, Stefan M. Duma
Software Mentions: 1
Published: over 9 years ago

10.1007/s10162-012-0323-6

Effects of Frequency Discrimination Training on Tinnitus: Results from Two Randomised Controlled Trials
Cited by: 33
Author(s): Derek J. Hoare, Victoria L. Kowalkowski, Deborah A. Hall
Software Mentions: 1
Published: over 12 years ago

10.1186/s12920-021-01041-7

Profiling non-coding RNA levels with clinical classifiers in pediatric Crohn’s disease
Cited by: 6
Author(s): Ranjit S. Pelia, Suresh Venkateswaran, Jonathan Matthews, Yael Haberman, David J. Cutler, Jeffrey S. Hyams, Lee A. Denson, Subra Kugathasan
Software Mentions: 1
Published: over 3 years ago

10.1186/s12920-019-0635-z

Differential alternative splicing regulation among hepatocellular carcinoma with different risk factors
Cited by: 10
Author(s): Young–Joo Jin, Seyoun Byun, Seonggyun Han, J. Edward Chamberlin, Dong-Wook Kim, Min Jung Kim, Younghee Lee
Software Mentions: 1
Published: almost 5 years ago

10.1186/s12920-020-00738-5

Fusion transcript detection using spatial transcriptomics
Cited by: 17
Author(s): Stefanie Friedrich, Erik L. L. Sonnhammer
Software Mentions: 1
Published: over 4 years ago

10.1007/s10439-012-0660-y

The Virginia Tech Response
Cited by: 22
Author(s): Steven Rowson, Stefan M. Duma
Software Mentions: 1
Published: about 12 years ago

10.1074/jbc.AC120.014698

Naturally occurring hotspot cancer mutations in Gα13 promote oncogenic signaling
Cited by: 18
Author(s): Marcin Maziarz, Anthony Federico, Jingyi Zhao, Lorena Dujmusic, Zhiming Zhao, Stefano Monti, Xaralabos Varelas, Mikel Garcia‐Marcos
Software Mentions: 1
Published: almost 4 years ago

10.1186/s13059-016-0873-8

Long non-coding RNAs display higher natural expression variation than protein-coding genes in healthy humans
Cited by: 120
Author(s): Aleksandra E. Kornienko, Christoph P. Dotter, Philipp M. Guenzl, Heinz Gisslinger, Bettina Gisslinger, Ciara Cleary, Róbert Královics, Florian M. Pauler, Denise P. Barlow
Software Mentions: 1
Published: almost 9 years ago

10.1186/s13059-015-0692-3

Single-cell mRNA sequencing identifies subclonal heterogeneity in anti-cancer drug responses of lung adenocarcinoma cells
Cited by: 218
Author(s): Kyu‐Tae Kim, Hye Won Lee, Hae‐Ock Lee, Sang Cheol Kim, Yun Jee Seo, Wingyan Chung, Hye Hyeon Eum, Do‐Hyun Nam, Junhyong Kim, Kyeung Min Joo, Woong-Yang Park
Software Mentions: 1
Published: over 9 years ago

10.7554/eLife.66808

Expansion of CD10neg neutrophils and CD14+HLA-DRneg/low monocytes driving proinflammatory responses in patients with acute myocardial infarction
Cited by: 18
Author(s): Daniela Fraccarollo, Jonas Neuser, Julian Möller, Christian Riehle, Paolo Galuppo, Johann Bauersachs
Software Mentions: 1
Published: over 3 years ago

10.3390/ijms22115741

Molecular Insights into the Role of Cysteine-Rich Peptides in Induced Resistance to Fusarium oxysporum Infection in Tomato Based on Transcriptome Profiling
Cited by: 7
Author(s): Marina P. Slezina, Е. А. Истомина, Tatyana V. Korostyleva, Alexey S. Kovtun, Artem S. Kasianov, Alexey A. Konopkin, Л. А. Щербакова
Software Mentions: 1
Published: over 3 years ago

10.1186/s13059-015-0608-2

Transcript and protein expression decoupling reveals RNA binding proteins and miRNAs as potential modulators of human aging
Cited by: 66
Author(s): Yuning Wei, Hai Hu, Gangcai Xie, Ning Fu, Zhibin Ning, Rong Zeng, Philipp Khaitovich
Software Mentions: 1
Published: almost 10 years ago

10.1186/s12920-020-00836-4

Differential alternative splicing between hepatocellular carcinoma with normal and elevated serum alpha-fetoprotein
Cited by: 5
Author(s): Young–Joo Jin, Habtamu Minassie Aycheh, Seonggyun Han, J. Edward Chamberlin, Jaehang Shin, Seyoun Byun, Younghee Lee
Software Mentions: 1
Published: almost 4 years ago

10.1186/s12909-021-02805-6

REAPing the benefits: development and use of a structured evaluation framework to codify learning resources for Global Health professionals
Cited by: 1
Author(s): Meike Schleiff, E. Adelaide Hahn, Caroline Dolive, Lillian James, Anant Mishra, Bhakti Hansoti
Software Mentions: 1
Published: over 3 years ago

10.1186/s13059-014-0451-x

Cfp1 is required for gene expression-dependent H3K4 trimethylation and H3K9 acetylation in embryonic stem cells
Cited by: 44
Author(s): Thomas Clouaire, Shaun Webb, Adrian Bird
Software Mentions: 1
Published: about 10 years ago

10.1186/gb-2013-14-9-r107

Genome sequencing reveals fine scale diversification and reticulation history during speciation in Sus
Cited by: 132
Author(s): Laurent Frantz, Joshua G. Schraiber, Ole Madsen, Hendrik‐Jan Megens, Mirte Bosse, Yogesh Paudel, Gono Semiadi, Erik Meijaard, Ning Li, R.P.M.A. Crooijmans, Alan Archibald, Montgomery Slatkin, Lawrence B. Schook, Greger Larson, Martien A. M. Groenen
Software Mentions: 1
Published: almost 12 years ago

10.1128/genomeA.00321-18

Genome Sequence of Australian Indigenous Wine Yeast Torulaspora delbrueckii COFT1 Using Nanopore Sequencing
Cited by: 10
Author(s): Federico Tondini, Vladimir Jiranek, Paul R. Grbin, Cristóbal A. Onetto
Software Mentions: 1
Published: over 6 years ago

10.1186/s12865-018-0268-6

Blood handling and leukocyte isolation methods impact the global transcriptome of immune cells
Cited by: 16
Author(s): Brittany A. Goods, Jacqueline Vahey, Arthur F. Steinschneider, Michael H. Askenase, Lauren H Sansing, J. Christopher Love
Software Mentions: 1
Published: about 6 years ago

10.1590/1678-4685-GMB-2019-0215

The combined analysis as the best strategy for Dual RNA-Seq mapping
Cited by: 5
Author(s): Eliandro Espindula, Edilena Reis Sperb, Evelise Bach, Luciane Maria Pereira Passaglia
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12913-016-1734-6

A pilot study among older adults of the concordance between their self-reports to a health survey and spousal proxy reports on their behalf
Cited by: 12
Author(s): Fredric D. Wolinsky, Lioness Ayres, Michael P. Jones, Yiyue Lou, George L. Wehby, Fred Ullrich
Software Mentions: 1
Published: about 8 years ago

10.3390/genes12081107

Gene Expression Analysis Provides New Insights into the Mechanism of Intramuscular Fat Formation in Japanese Black Cattle
Cited by: 13
Author(s): Shuji Ueda, Mana Hosoda, Ken‐ichi Yoshino, Minoru Yamanoue, Yasuhito Shirai
Software Mentions: 1
Published: over 3 years ago

10.1002/jcsm.12486

Myopalladin promotes muscle growth through modulation of the serum response factor pathway
Cited by: 23
Author(s): Maria Carmela Filomena, Daniel L. Yamamoto, Marco Caremani, Vinay Kumar Kadarla, Giuseppina Mastrototaro, Simone Serio, Anupama Vydyanath, Margherita Mutarelli, Arcamaria Garofalo, Irene Pertici, Ralph Knöll, Vincenzo Nigro, Pradeep K. Luther, Richard L. Lieber, Moriah R. Beck, Marco Linari, Marie Louise Bang
Software Mentions: 1
Published: about 5 years ago

10.3389/fpubh.2021.653543

Challenges of HIV Self-Test Distribution for Index Testing When HIV Status Disclosure Is Low: Preliminary Results of a Qualitative Study in Bamako (Mali) as Part of the ATLAS Project
Cited by: 7
Author(s): Sokhna Boye, Seydou Bouaré, Odette Ky-Zerbo, Nicolas Rouveau, Arlette Simo Fotso, Marc d’Elbée, Romain Silhol, Mathieu Maheu‐Giroux, Anthony Vautier, G. Breton, Abdelaye Keita, Anne Bekelynck, Alice Desclaux, Joseph Larmarange, Dolorès Pourette
Software Mentions: 1
Published: over 3 years ago

10.1186/s12913-019-4881-8

Experience gained from the implementation of the Saudi TraumA Registry (STAR)
Cited by: 5
Author(s): Jane E. Ford, Abdulrahman Alqahtani, Shatha A. A. Abuzinada, Peter Cameron, Mark Fitzgerald, Ahmed Alenizi, Dina Farjou
Software Mentions: 1
Published: almost 5 years ago

10.3389/fpubh.2021.593453

Sustainable Behavior Change for Health Supported by Person-Tailored, Adaptive, Risk-Aware Digital Coaching in a Social Context: Study Protocol for the STAR-C Research Programme
Cited by: 3
Author(s): Nawi Ng, Malin Eriksson, Esteban Guerrero, Carina Gustafsson, John Kinsman, Jens Lindberg, Helena Lindgren, Kristina Lindvall, Anna Sofia Lundgren, Göran Lönnberg, Klas-Göran Sahlén, Ailiana Santosa, Linda Richter Sundberg, Lars Weinehall, Patrik Wennberg
Software Mentions: 1
Published: over 3 years ago

10.3389/fpsyg.2019.02026

Auditory Stimulation Training With Technically Manipulated Musical Material in Preschool Children With Specific Language Impairments: An Explorative Study
Cited by: 7
Author(s): Ingo Roden, Kaija Früchtenicht, Gunter Kreutz, Friedrich Linderkamp, Dietmar Grube
Software Mentions: 1
Published: about 5 years ago

10.7150/jca.55553

Exosomal miR-1305 in the oncogenic activity of hypoxic multiple myeloma cells: a biomarker for predicting prognosis
Cited by: 15
Author(s): Ji Young Lee, Daeun Ryu, Se-won Lim, Kyung Ju Ryu, Myung Eun Choi, Sang Eun Yoon, Kihyun Kım, Chaehwa Park, Seok Jin Kim
Software Mentions: 1
Published: almost 4 years ago

10.7150/jca.56340

Highly deregulated lncRNA LOC is associated with overall worse prognosis in Hepatocellular Carcinoma patients
Cited by: 2
Author(s): Li Min Lim, Lay Hiang Ling, Yu Pei Neo, Alexander Chung, Brian K. P. Goh, Pierce K. H. Chow, Chung Yip Chan, Peng Chung Cheow, Ser Yee Lee, Tony Kiat-Hon Lim, Samuel S. Chong, London Lucien Ooi, Caroline Lee
Software Mentions: 1
Published: almost 4 years ago

10.20517/2394-4722.2018.84

AF1q inhibited T cell attachment to breast cancer cell by attenuating Intracellular Adhesion Molecule-1 expression
Cited by: 4
Author(s): Jino Park, Jae Yeon Hwang, Alexandra Thore, Soojin Kim, Tomiteru Togano, Shotaro Hagiwara, Juw Won Park, William Tse
Software Mentions: 1
Published: over 5 years ago

10.1186/s12913-021-06521-1

Protocol for a two-arm pragmatic stepped-wedge hybrid effectiveness-implementation trial evaluating Engagement and Collaborative Management to Proactively Advance Sepsis Survivorship (ENCOMPASS)
Cited by: 3
Author(s): Marc Kowalkowski, Tara Eaton, Andrew McWilliams, Hazel Tapp, Aleta Rios, Stephanie Murphy, Ryan Burns, Bella Gutnik, Katherine O’Hare, Lewis McCurdy, Michael Dulin, Christopher M. Blanchette, Shih-Hsiung Chou, Scott D. Halpern, Derek C. Angus, Stephanie Parks Taylor
Software Mentions: 1
Published: over 3 years ago

10.1111/jce.14201

STAR mapping method to identify driving sites in persistent atrial fibrillation: Application through sequential mapping
Cited by: 18
Author(s): Shohreh Honarbakhsh, Richard J. Schilling, Malcolm Finlay, Emily Keating, Waqas Ullah, Ross J. Hunter
Software Mentions: 1
Published: about 5 years ago

10.1083/jcb.201908078

Analysis of copy number alterations reveals the lncRNA ALAL-1 as a regulator of lung cancer immune evasion
Cited by: 30
Author(s): Alejandro Athie, Francesco P. Marchese, Jovanna González, Teresa Lozano, Ivan Raimondi, Prasanna Kumar Juvvuna, Amaya Abad, Oskar Marín-Béjar, Jacques Serizay, Dannys Martínez, Daniel Ajona, María J. Pajares, Juan Sandoval, Luis M. Montuenga, Chandrasekhar Kanduri, Juan José Lasarte, Maite Huarte
Software Mentions: 1
Published: about 4 years ago

10.3389/fpsyg.2021.629231

Assessment Methods for Service-Learning Projects in Engineering in Higher Education: A Systematic Review
Cited by: 7
Author(s): Marián Queiruga-Dios, María Jesús Santos Sánchez, Miguel Ángel Queiruga Dios, Pedro Mauricio Acosta Castellanos, Araceli Queiruga Dios
Software Mentions: 1
Published: over 3 years ago

10.3389/fpsyg.2015.00064

Children with speech sound disorder: comparing a non-linguistic auditory approach with a phonological intervention approach to improve phonological skills
Cited by: 6
Author(s): Cristina Ferraz Borges Murphy, Luciana O. Pagan-Neves, HaydÃ©e F. Wertzner, Eliane Schochat
Software Mentions: 1
Published: almost 10 years ago

10.1186/s12864-018-4456-9

Ouroboros resembling competitive endogenous loop (ORCEL) in circular RNAs revealed through transcriptome sequencing dataset analysis
Cited by: 4
Author(s): Yu-Chen Liu, Hsiao Chin Hong, Chi Yang, Wei Hsiang Lee, Hsin Tzu Huang, Hsien-Da Huang
Software Mentions: 1
Published: over 6 years ago

10.3389/fpsyt.2020.00779

Engaging Adults Experiencing Homelessness in Recovery Education: A Qualitative Analysis of Individual and Program Level Enabling Factors
Cited by: 5
Author(s): Bushra Khan, Nadine Reid, Rebecca Brown, Nicole Kozloff, Vicky Stergiopoulos
Software Mentions: 1
Published: over 4 years ago

10.1111/jcmm.15702

BMP2 signalling activation enhances bone metastases of non‐small cell lung cancer
Cited by: 19
Author(s): Fei Huang, Cao Yun, Gui Wu, Junying Chen, CaihongWang, Wanzun Lin, Ruilong Lan, Bing Wu, Xianhe Xie, Jinsheng Hong, Liya Fu
Software Mentions: 1
Published: over 4 years ago

10.1007/s10439-019-02345-7

Development and Multi-Scale Validation of a Finite Element Football Helmet Model
Cited by: 24
Author(s): William Decker, Alexander M. Baker, Xin Ye, Philip J. Brown, Joel D. Stitzel, F. Scott Gayzik
Software Mentions: 1
Published: about 5 years ago

10.1007/s10439-020-02703-w

Ranking and Rating Bicycle Helmet Safety Performance in Oblique Impacts Using Eight Different Brain Injury Models
Cited by: 58
Author(s): Madelen Fahlstedt, Fady F. Abayazid, Matthew B. Panzer, Antonia Trotta, Wei Zhao, Mazdak Ghajari, Michael D. Gilchrist, Songbai Ji, Svein Kleiven, Xiaogai Li, Aisling Ní Annaidh, Peter Halldin
Software Mentions: 1
Published: almost 4 years ago

10.3389/fpsyt.2020.00276

Functional Neuroimaging in Psychiatry—Aiding in Diagnosis and Guiding Treatment. What the American Psychiatric Association Does Not Know
Cited by: 28
Author(s): Theodore A. Henderson, Muriel J. van Lierop, Mary Kay McLean, J.M. Uszler, John F. Thornton, Yin-Hui Siow, Dan G. Pavel, Joe Cardaci, Philip Cohen
Software Mentions: 1
Published: over 4 years ago

10.3389/fpsyt.2020.565896

Contextualized School-Based Cognitive Behavioral Therapy (CBT) Intervention for Malaysian Secondary School Students
Cited by: 0
Author(s): Jo Anne Saw, Cai Lian Tam, Vanlal Thanzami, Gregory Bonn
Software Mentions: 1
Published: almost 4 years ago

10.3389/fpsyt.2018.00597

Evaluation of the Association Between Genetic Variants in Circadian Rhythm Genes and Posttraumatic Stress Symptoms Identifies a Potential Functional Allele in the Transcription Factor TEF
Cited by: 8
Author(s): Sarah D. Linnstaedt, Yue Pan, Matthew C. Mauck, Jenyth Sullivan, Christine Zhou, Lindsey Jung, Cathleen A. Rueckeis, Jameson D Blount, Matthew S Carson, Andrew S. Tungate, Michael C. Kurz, Phyllis L. Hendry, Christopher Lewandowski, Teresa D׳Anza, Elizabeth M. Datner, Kathy Bell, Megan Lechner, Jeffrey W. Shupp, Bruce A. Cairns, Samuel A. McLean
Software Mentions: 1
Published: about 6 years ago

10.3389/fpsyt.2019.00575

Psychometric Properties of Scale to Assess the Therapeutic Relationship—JapaneseVersion (STAR-J)
Cited by: 5
Author(s): Asami Matsunaga, Sosei Yamaguchi, Utako Sawada, Takuma Shiozawa, Chiyo Fujii
Software Mentions: 1
Published: about 5 years ago

10.3389/fpsyt.2019.00690

The Three Ps: Psychiatry, Pharmacy, and Pharmacogenomics, a Brief Report From New Zealand
Cited by: 11
Author(s): Simran Maggo, Kyra L.V. Sycamore, Allison L. Miller, Martin A. Kennedy
Software Mentions: 1
Published: about 5 years ago

10.3389/fpls.2020.01249

Combining a New Exome Capture Panel With an Effective varBScore Algorithm Accelerates BSA-Based Gene Cloning in Wheat
Cited by: 29
Author(s): Caixia Dong, Lichao Zhang, Zhongxu Chen, Chuan Xia, Yong–Qiang Gu, Jirui Wang, Danping Li, Zhencheng Xie, Qiang Zhang, Xueying Zhang, Lixuan Gui, Xu Liu, Xiuying Kong
Software Mentions: 1
Published: over 4 years ago

10.3389/fpls.2020.00289

Management, Analyses, and Distribution of the MaizeCODE Data on the Cloud
Cited by: 3
Author(s): Liya Wang, Zhenyuan Lu, Melissa delaBastide, Peter Van Buren, Xiaofei Wang, Cornel Ghiban, Michael Regulski, Jörg Drenkow, Xiaosa Xu, Carlos Ortiz‐Ramírez, Cristina F. Marco, Sara Goodwin, Alexander Dobin, Kenneth D. Birnbaum, David Jackson, Robert A. Martienssen, W. Richard McCombie, David Micklos, Michael C. Schatz, Doreen Ware, T Gingeras
Software Mentions: 1
Published: over 4 years ago

10.3389/fpls.2019.01116

Quantitative Proteomics Reveals a Role for SERINE/ARGININE-Rich 45 in Regulating RNA Metabolism and Modulating Transcriptional Suppression via the ASAP Complex in Arabidopsis thaliana
Cited by: 15
Author(s): Samuel Chen, Timothy J. Rooney, Anna Hu, Hunter S. Beard, Wesley M. Garrett, Leann M. Mangalath, Jordan J. Powers, Bret Cooper, Xiaoning Zhang
Software Mentions: 1
Published: about 5 years ago

10.1186/s12864-015-1415-6

Natural variation of gene models in Drosophila melanogaster
Cited by: 8
Author(s): Yerbol Z. Kurmangaliyev, Alexander V. Favorov, Noha Mohamed Osman, Kjong-Van Lehmann, Daniel Campo, Matthew P. Salomon, John Tower, Mikhail S. Gelfand, Sergey V. Nuzhdin
Software Mentions: 1
Published: over 9 years ago

10.3389/fpls.2018.00123

Morphological and Molecular Data Reveal Three Distinct Populations of Indian Wild Rice Oryza rufipogon Griff. Species Complex
Cited by: 24
Author(s): Balwant Singh, Nisha Singh, Sanjay Mishra, Kabita Tripathi, B. P. Singh, Vandna Rai, Ashok Kumar Singh, Nagendra Singh
Software Mentions: 1
Published: almost 7 years ago

10.1242/jcs.258685

Activation of IRE1, PERK and salt-inducible kinases leads to Sec body formation in <i>Drosophila</i> S2 cells
Cited by: 5
Author(s): Chujun Zhang, Wessel van Leeuwen, Marloes Blotenburg, Angelica Aguilera-Gomez, Sem Brussee, Rianne Grond, Harm H. Kampinga, Cathérine Rabouille
Software Mentions: 1
Published: about 3 years ago

10.1186/1758-2946-4-19

Applied and implied semantics in crystallographic publishing
Cited by: 3
Author(s): Brian McMahon
Software Mentions: 1
Published: about 12 years ago

10.5334/jcr.203

Metastasis of Breast Cancer Promoted by Circadian Rhythm Disruption due to Light/Dark Shift and its Prevention by Dietary Quercetin in Mice
Cited by: 8
Author(s): Minoru Numata, Akane Hirano, Yukika Yamamoto, Michiko Yasuda, Nobuhiko Miura, Kazutoshi Sayama, Masa‐Aki Shibata, Tomohiro Asai, Naoto Oku, Noriyuki Miyoshi, Kayoko Shimoi
Software Mentions: 1
Published: almost 4 years ago

10.1007/s10875-020-00932-1

Identification of Critical Transcriptomic Signaling Pathways in Patients with H Syndrome and Rosai-Dorfman Disease
Cited by: 2
Author(s): Samuel Lara-Reyna, James A. Poulter, Elton J. R. Vasconcelos, Mark Kačar, Michael F. McDermott, Reuben Tooze, Rainer Döffinger, Sinisa Savic
Software Mentions: 1
Published: almost 4 years ago

10.3389/fpls.2017.01763

Genetic Loci Governing Grain Yield and Root Development under Variable Rice Cultivation Conditions
Cited by: 29
Author(s): Margaret Catolos, Nitika Sandhu, Shalabh Dixit, Noraziyah Abd Aziz Shamsudin, Ma. Elizabeth B. Naredo, Kenneth L. McNally, Amelia Henry, Ma. Genaleen Q. Diaz, Arvind Kumar
Software Mentions: 1
Published: about 7 years ago

10.3389/fpls.2017.00206

Genome-Wide Association and Transcriptome Analyses Reveal Candidate Genes Underlying Yield-determining Traits in Brassica napus
Cited by: 57
Author(s): Kun Lü, Peng Liu, Chao Zhang, Jianchang Lu, Bo Yang, Zhongchun Xiao, Ying Liang, Xiaozheng Xu, Cunmin Qu, Kai Zhang, Liezhao Liu, Qinlong Zhu, FU Ming-lian, Xianjun Yuan, Jiana Li
Software Mentions: 1
Published: almost 8 years ago

10.1186/s12864-020-6670-5

Hybrid transcriptome sequencing approach improved assembly and gene annotation in Cynara cardunculus (L.)
Cited by: 12
Author(s): G. Puglia, Andrey D. Prjibelski, Domenico Vitale, Elena Bushmanova, Karl Schmid, S.A. Raccuia
Software Mentions: 1
Published: over 4 years ago

10.3389/fpls.2018.00095

Development of Molecular Markers Linked to Powdery Mildew Resistance Gene Pm4b by Combining SNP Discovery from Transcriptome Sequencing Data with Bulked Segregant Analysis (BSR-Seq) in Wheat
Cited by: 45
Author(s): Peipei Wu, Jingzhong Xie, Jinghuang Hu, Dan Qiu, Yong Li, Jingting Li, Miaomiao Li, Hongjun Zhang, Li Yang, Hongwei Liu, Yang Zhou, Zhongjun Zhang, Hongjie Li
Software Mentions: 1
Published: almost 7 years ago

10.3389/fpls.2018.00115

A Genomic View of Alternative Splicing of Long Non-coding RNAs during Rice Seed Development Reveals Extensive Splicing and lncRNA Gene Families
Cited by: 25
Author(s): Edward Kiegle, Alex Garden, Elia Lacchini, Martin M. Kater
Software Mentions: 1
Published: almost 7 years ago

10.3390/jcm8030297

Comparative Gene Expression Profiles in Parathyroid Adenoma and Normal Parathyroid Tissue
Cited by: 14
Author(s): Young Jun Chai, Han‐Jung Chae, Kwangsoo Kim, Heonyi Lee, Sukwoo Choi, Kyu Eun Lee, Sang Wan Kim
Software Mentions: 1
Published: over 5 years ago

10.1186/s12864-019-5533-4

A high-throughput SNP discovery strategy for RNA-seq data
Cited by: 40
Author(s): Yun Zhao, Ke Wang, Wenli Wang, Tingting Yin, Weiqi Dong, Changjie Xu
Software Mentions: 1
Published: over 5 years ago

10.1186/s12864-015-1267-0

Splicing landscape of the eight collaborative cross founder strains
Cited by: 7
Author(s): Christina Zheng, Beth Wilmot, Nicole A.R. Walter, Denesa Oberbeck, Sunita Kawane, Robert P. Searles, Shannon K. McWeeney, Robert Hitzemann
Software Mentions: 1
Published: almost 10 years ago

10.3390/jcm10061238

Clinical Evidence behind Stereotactic Radiotherapy for the Treatment of Ventricular Tachycardia (STAR)—A Comprehensive Review
Cited by: 14
Author(s): Marcin Miszczyk, Tomasz Jadczyk, Krzysztof S. Gołba, Wojciech Wojakowski, Krystian Wita, Jacek Bednarek, Sławomir Blamek
Software Mentions: 1
Published: over 3 years ago

10.1186/s12864-016-3262-5

Sequence-specific bias correction for RNA-seq data using recurrent neural networks
Cited by: 13
Author(s): Yao-Zhong Zhang, Rui Yamaguchi, Seiya Imoto, Satoru Miyano
Software Mentions: 1
Published: almost 8 years ago

10.7554/eLife.28652

Host proteostasis modulates influenza evolution
Cited by: 30
Author(s): Angela M Phillips, Luna O Gonzalez, Emmanuel E Nekongo, Anna I. Ponomarenko, Sean M. McHugh, Vincent Butty, Stuart S. Levine, Yu‐Shan Lin, Leonid A. Mirny, Matthew D. Shoulders
Software Mentions: 1
Published: about 7 years ago

10.3389/fpls.2021.635990

Reproductive Proteins Evolve Faster Than Non-reproductive Proteins Among Solanum Species
Cited by: 11
Author(s): Leonie C. Moyle, Meng Wu, Matthew J. S. Gibson
Software Mentions: 1
Published: over 3 years ago

10.7554/eLife.59303

One-shot analysis of translated mammalian lncRNAs with AHARIBO
Cited by: 13
Author(s): L. Minati, Claudia Firrito, Alessia Del Piano, Alberto Peretti, Simone Sidoli, Daniele Peroni, Romina Belli, Francesco Gandolfi, Alessandro Romanel, Paola Bernabò, Jacopo Zasso, Alessandro Quattrone, Graziano Guella, Fabio Lauria, Gabriella Viero, Massimiliano Clamer
Software Mentions: 1
Published: almost 4 years ago

10.3389/fpls.2020.00612

Identification of α-Amyrin 28-Carboxylase and Glycosyltransferase From Ilex asprella and Production of Ursolic Acid 28-O-β-D-Glucopyranoside in Engineered Yeast
Cited by: 4
Author(s): Xiaoyu Ji, Shumin Lin, Yuanyuan Chen, Jiawei Liu, Xiaoyun Yun, Tiancheng Wang, Jialiang Qin, Chaoquan Luo, Kui Wang, Zhongxiang Zhao, Ruoting Zhan, Hui Xu
Software Mentions: 1
Published: over 4 years ago

10.3389/fpls.2020.00427

Comparative Analysis of Chitin SynthaseA dsRNA Mediated RNA Interference for Management of Crop Pests of Different Families of Lepidoptera
Cited by: 22
Author(s): Seema Rana, Ashish B. Rajurkar, K. K. Kumar, S. Mohankumar
Software Mentions: 1
Published: over 4 years ago

10.1186/s12864-019-5845-4

Characterization of the bovine salivary gland transcriptome associated with Mycobacterium avium subsp. paratuberculosis experimental challenge
Cited by: 9
Author(s): S. Mallikarjunappa, Mounir Adnane, Paul Cormican, Niel A. Karrow, Kieran G. Meade
Software Mentions: 1
Published: over 5 years ago

10.1530/JOE-13-0346

Oxidative stress and adrenocortical insufficiency
Cited by: 41
Author(s): Rathi Prasad, Julia Kowalczyk, Eirini Meimaridou, Helen L Storr, Louise A. Metherell
Software Mentions: 1
Published: over 10 years ago

10.3390/ani10061035

Analysis of lncRNAs Expression Profiles in Hair Follicle of Hu Sheep Lambskin
Cited by: 16
Author(s): Xiaoyang Lv, Wei-Hao Chen, Wei Sun, Zahid Hussain, Shanhe Wang, Jinyu Wang
Software Mentions: 1
Published: over 4 years ago

10.1093/jxb/erx044

Three FT and multiple CEN and BFT genes regulate maturity, flowering, and vegetative phenology in kiwifruit
Cited by: 31
Author(s): Charlotte Voogd, Lara Brian, Tianchi Wang, Andrew C. Allan, Erika Varkonyi‐Gasic
Software Mentions: 1
Published: over 7 years ago

10.3389/fpls.2021.710812

Diversity in Phytochemical Composition, Antioxidant Capacities, and Nutrient Contents Among Mungbean and Lentil Microgreens When Grown at Plain-Altitude Region (Delhi) and High-Altitude Region (Leh-Ladakh), India
Cited by: 12
Author(s): Priti, Gyan P. Mishra, Harsh Kumar Dikshit, T. Vinutha, Mechiya Tomuilim Tontang, Tsering Stobdan, Sheela Sangwan, Muraleedhar S. Aski, Ajeet Singh, Ranjeet Kumar, Kuldeep Tripathi, Shiv Kumar, Ramakrishnan M. Nair, Shelly Praveen
Software Mentions: 1
Published: over 3 years ago

10.1093/jxb/erz558

Mapping a double flower phenotype-associated gene DcAP2L in Dianthus chinensis
Cited by: 15
Author(s): Qijian Wang, Xiaoni Zhang, Shengnan Lin, Shaozong Yang, Xiuli Yan, Mohammed Bendahmane, Manzhu Bao, Xiaopeng Fu
Software Mentions: 1
Published: almost 5 years ago

10.3390/ijms22126478

Differential Regulation of Gonadotropins as Revealed by Transcriptomes of Distinct LH and FSH Cells of Fish Pituitary
Cited by: 15
Author(s): Lian Hollander-Cohen, Matan Golan, Berta Levavi‐Sivan
Software Mentions: 1
Published: over 3 years ago

10.3389/fpls.2016.01759

Small RNAs from Bemisia tabaci Are Transferred to Solanum lycopersicum Phloem during Feeding
Cited by: 11
Author(s): Paula J. M. van Kleeff, Marc Galland, Robert C. Schuurink, Petra Bleeker
Software Mentions: 1
Published: almost 8 years ago

10.1093/jxb/eraa315

Arabidopsis exoribonuclease USB1 interacts with the PPR-domain protein SOAR1 to negatively regulate abscisic acid signaling
Cited by: 11
Author(s): Ma Yu, Shang Zhang, Chao Bi, Chao Mei, Shang-Chuan Jiang, Xiaofang Wang, Zhi John Lu, David Zhang
Software Mentions: 1
Published: about 4 years ago

10.1186/s12864-021-07733-9

Characterization of nucleic acids from extracellular vesicle-enriched human sweat
Cited by: 17
Author(s): Geneviève Bart, Daniel Fischer, Anatoly Samoylenko, Artem Zhyvolozhnyi, Pavlo Stehantsev, Ilkka Miinalainen, Mika Kaakinen, Tuomas Nurmi, Prateek Singh, Susanna Kosamo, Lauri Rannaste, Sirja Viitala, Jussi Hiltunen, Seppo Vainio
Software Mentions: 1
Published: over 3 years ago

10.3390/ani11092706

Ad Libitum Feeding in Broiler Breeder Hens Alters the Transcriptome of Granulosa Cells of Pre-Hierarchal Follicles
Cited by: 4
Author(s): Laurie Francoeur, Claire Stephens, Patricia A. Johnson
Software Mentions: 1
Published: about 3 years ago

10.1111/obr.12961

Core outcome set for behavioural weight management interventions for adults with overweight and obesity: Standardised reporting of lifestyle weight management interventions to aid evaluation (STAR‐LITE)
Cited by: 25
Author(s): Ruth M. Mackenzie, Louisa Ells, Sharon Anne Simpson, Jennifer Logue
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.ppat.1003591

Chikungunya Virus 3′ Untranslated Region: Adaptation to Mosquitoes and a Population Bottleneck as Major Evolutionary Forces
Cited by: 78
Author(s): Rubing Chen, Eryu Wang, Konstantin A. Tsetsarkin, Scott C. Weaver
Software Mentions: 1
Published: about 11 years ago

10.3389/fpls.2020.00935

What Matters for C4 Transporters: Evolutionary Changes of Phosphoenolpyruvate Transporter for C4 Photosynthesis
Cited by: 4
Author(s): Ming‐Ju Amy Lyu, Yaling Wang, Jingchao Jiang, Xinyu Liu, Genyun Chen, Xin Guang Zhu
Software Mentions: 1
Published: over 4 years ago

10.3390/ani10020253

Combinatorial Discriminant Analysis Applied to RNAseq Data Reveals a Set of 10 Transcripts as Signatures of Exposure of Cattle to Mycobacterium avium subsp. paratuberculosis
Cited by: 4
Author(s): M. Malvisi, Nico Curti, Daniel Remondini, Maria Grazia De Iorio, Fiorentina Palazzo, G. Gandini, Silvia Vitali, M. Polli, J. L. Williams, Giulietta Minozzi
Software Mentions: 1
Published: almost 5 years ago

10.3389/fpls.2020.611140

Integrated Metabolome and Transcriptome Analyses Reveal Etiolation-Induced Metabolic Changes Leading to High Amino Acid Contents in a Light-Sensitive Japanese Albino Tea Cultivar
Cited by: 17
Author(s): Hiroto Yamashita, Yuka Kambe, Megumi Ohshio, Aya Kunihiro, Yasuno Tanaka, Toshikazu Suzuki, Yoriyuki Nakamura, Akio Morita, Takashi Ikka
Software Mentions: 1
Published: almost 4 years ago

10.3389/fpls.2021.697556

Transcriptome Analysis of Melocactus glaucescens (Cactaceae) Reveals Metabolic Changes During in vitro Shoot Organogenesis Induction
Cited by: 1
Author(s): Gabriela Torres-Silva, Ludmila Nayara Freitas Correia, Diego Silva Batista, Andréa Dias Koehler, Sheila Vitória Resende, Elisson Romanel, Daniela Cassol, Ana Maria Rocha de Almeida, Susan R. Strickler, Chelsea D. Specht, Wagner Campos Otoni
Software Mentions: 1
Published: over 3 years ago

10.1186/s12864-018-5341-2

Kinetics of the chromosome 14 microRNA cluster ortholog and its potential role during placental development in the pregnant mare
Cited by: 21
Author(s): Pouya Dini, Peter Daels, Shavahn C. Loux, A. Esteller-Vico, Mariano Carossino, Kirsten E. Scoggin, Barry A. Ball
Software Mentions: 1
Published: almost 6 years ago

10.1080/19768354.2018.1512522

Comparison of long noncoding RNA between muscles and adipose tissues in <i>Hanwoo</i> beef cattle
Cited by: 9
Author(s): Jae-Ho Choi, Donghyun Shin, Hyun-Jeong Lee, Jae-Don Oh
Software Mentions: 1
Published: almost 6 years ago

10.3389/fpls.2017.00536

SNP Discovery and Genetic Variation of Candidate Genes Relevant to Heat Tolerance and Agronomic Traits in Natural Populations of Sand Rice (Agriophyllum squarrosum)
Cited by: 17
Author(s): Pengshan Zhao, Jiwei Zhang, Qian Chen, Qin Zhou, Xinquan Zhao, Guoxiong Chen, Xiaofei Ma
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.ppat.1006846

A new cell culture model to genetically dissect the complete human papillomavirus life cycle
Cited by: 40
Author(s): Malgorzata Bienkowska-Haba, Wioleta Łuszczek, Julia E. Myers, Timothy R. Keiffer, Stephen DiGiuseppe, Paula Polk, Jason M. Bodily, Rona S. Scott, Martin Sapp
Software Mentions: 1
Published: over 6 years ago

10.7554/eLife.13374

Metabolic reprogramming during neuronal differentiation from aerobic glycolysis to neuronal oxidative phosphorylation
Cited by: 404
Author(s): Xinde Zheng, Leah Boyer, Mingji Jin, Jérôme Mertens, Yongsung Kim, Li Ma, Michael W. Hamm, Fred H. Gage, Tony Hunter
Software Mentions: 1
Published: over 8 years ago

10.1186/s12864-019-6122-2

The effects of a globin blocker on the resolution of 3’mRNA sequencing data in porcine blood
Cited by: 4
Author(s): Kyu-Sang Lim, Qian Dong, Pamela Renate Moll, Jana Vitkovska, Gregor Wiktorin, Stephanie Bannister, Dalia Daujotytė, Christopher K. Tuggle, Joan K. Lunney, Graham Plastow, Jack C. M. Dekkers
Software Mentions: 1
Published: about 5 years ago

10.3389/fpls.2019.00953

Waterlogging Tolerance at Germination in Field Pea: Variability, Genetic Control, and Indirect Selection
Cited by: 13
Author(s): Samina Zaman, Al Imran Malik, Parwinder Kaur, Federico M. Ribalta, William Erskine
Software Mentions: 1
Published: over 5 years ago

Projects: cran: STAR

Papers Mentioning STAR 5,759