cran: STAR | Projects | Ecosyste.ms: Papers

10.1038/s41598-019-41058-8

Rapid and reversible suppression of ALT by DAXX in osteosarcoma cells
Cited by: 32
Author(s): Kathryn E. Yost, Sarah F. Clatterbuck Soper, Robert L. Walker, Marbin Pineda, Yuelin J. Zhu, Corbin D. Ester, Soyeon A. Showman, Anna V. Roschke, Joshua J. Waterfall, Paul S. Meltzer
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-41115-2

Pro-angiogenic Ginsenosides F1 and Rh1 Inhibit Vascular Leakage by Modulating NR4A1
Cited by: 10
Author(s): Ji In Kang, Yuni Choi, Chang-Hau Cui, Daeyoup Lee, Sun Chang Kim, Ho Min Kim
Software Mentions: 1
Published: over 5 years ago

10.1186/s12864-016-3098-z

Anchoring quartet-based phylogenetic distances and applications to species tree reconstruction
Cited by: 24
Author(s): Erfan Sayyari, Siavash Mirarab
Software Mentions: 1
Published: about 8 years ago

10.1007/s00062-017-0639-z

Iatrogenic Vessel Dissection in Endovascular Treatment of Acute Ischemic Stroke
Cited by: 34
Author(s): Barbara Goeggel Simonetti, Justine Hulliger, Etienne Mathier, Simon Jung, Urs Fischer, Hakan Sarıkaya, Johannes Slotboom, Gerhard Schroth, Pasquale Mordasini, Jan Gralla, Marcel Arnold
Software Mentions: 1
Published: about 7 years ago

10.1186/s13148-015-0087-z

Epigenetic reprogramming of melanoma cells by vitamin C treatment
Cited by: 69
Author(s): Christopher B. Gustafson, Chao Yang, Kevin M. Dickson, Hongwei Shao, Derek Van Booven, J. William Harbour, Zhao Jun Liu, Gaofeng Wang
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-019-41269-z

The acidic protein rich in leucines Anp32b is an immunomodulator of inflammation in mice
Cited by: 11
Author(s): Jan Chemnitz, Dorothea Pieper, Lena Stich, Udo Schumacher, Stefan Balabanov, Michael Spohn, Adam Grundhoff, Alexander Steinkasserer, Joachim Hauber, Elisabeth Zinser
Software Mentions: 1
Published: over 5 years ago

10.1186/s13148-021-01023-7

BRG1 knockdown inhibits proliferation through multiple cellular pathways in prostate cancer
Cited by: 11
Author(s): Katherine A. Giles, Cathryn M. Gould, Joanna Achinger-Kawecka, Scott G. Page, Georgia R. Kafer, Samuel Rogers, Phuc-Loi Luu, Anthony J. Cesare, Susan J. Clark, Phillippa C. Taberlay
Software Mentions: 1
Published: almost 4 years ago

10.1038/s41598-019-41277-z

A reference collection of patient-derived cell line and xenograft models of proneural, classical and mesenchymal glioblastoma
Cited by: 109
Author(s): Brett W. Stringer, Bryan W. Day, Rochelle C.J. D’Souza, Paul Jamieson, Kathleen S. Ensbey, Zara C. Bruce, Yi Chieh Lim, Kate Goasdoué, Carolin Offenhäuser, Seçkin Akgül, Suzanne Allan, Thomas Robertson, Peter C. Lucas, Gert Tollesson, Scott Campbell, Chris Winter, Hongdo Do, Alexander Dobrovic, Po Inglis, Rosalind L. Jeffree, Terrance G. Johns, Andrew W. Boyd
Software Mentions: 1
Published: over 5 years ago

10.1186/s13148-018-0598-5

Histone deacetylase inhibitors exert anti-tumor effects on human adherent and stem-like glioma cells
Cited by: 45
Author(s): Halina Waś, Sylwia Król, Dante Rotili, Antonello Mai, Bartosz Wojtaś, Bożena Kamińska, Marta Maleszewska
Software Mentions: 1
Published: almost 6 years ago

10.1111/cen.14109

Primary adrenal insufficiency: New genetic causes and their long‐term consequences
Cited by: 45
Author(s): Federica Buonocore, John C. Achermann
Software Mentions: 1
Published: about 5 years ago

10.1007/s10577-021-09658-1

Genome-wide mapping of histone modifications during axenic growth in two species of Leptosphaeria maculans showing contrasting genomic organization
Cited by: 13
Author(s): Jessica L. Soyer, Colin Clairet, Nicolas Lapalu, Thierry Rouxel, Eva H. Stukenbrock, Isabelle Fudal
Software Mentions: 1
Published: over 3 years ago

10.1186/1471-2164-15-1089

RETRACTED ARTICLE: Species-specific chemosensory gene expression in the olfactory organs of the malaria vector Anopheles gambiae
Cited by: 15
Author(s): Theresa K Hodges, Luciano V. Cosme, Giridhar Athrey, Sharmila Pathikonda, Willem Takken, Michel A. Slotman
Software Mentions: 1
Published: almost 10 years ago

10.1186/s12864-015-2349-8

FRAMA: from RNA-seq data to annotated mRNA assemblies
Cited by: 31
Author(s): Martin Bens, Arne Sahm, Marco Groth, Niels Jahn, Michaela Morhart, Susanne Holtze, Thomas B. Hildebrandt, Matthias Platzer, Karol Szafranski
Software Mentions: 1
Published: almost 9 years ago

10.3390/ijms20215484

Whole-Genome and Transposed Duplication Contributes to the Expansion and Diversification of TLC Genes in Maize
Cited by: 12
Author(s): Weina Si, Tianlu Hang, Mingyue Guo, Zhe Chen, Qizhi Liang, Longjiang Gu, Tao Ding
Software Mentions: 1
Published: about 5 years ago

10.1186/s13015-015-0046-4

A polynomial delay algorithm for the enumeration of bubbles with length constraints in directed graphs
Cited by: 2
Author(s): Gustavo Sacomoto, Vincent Lacroix, Marie‐France Sagot
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-019-42184-z

Unveiling novel targets of paclitaxel resistance by single molecule long-read RNA sequencing in breast cancer
Cited by: 15
Author(s): Lijun Bi, Xin Hu, Zhi‐Ming Shao
Software Mentions: 1
Published: over 5 years ago

10.1111/acel.13276

Prevalent intron retention fine‐tunes gene expression and contributes to cellular senescence
Cited by: 20
Author(s): Jun Yao, Dong Ding, Xueping Li, Ting Shen, Haihui Fu, Judy Zhong, Gang Wei, Ting Ni
Software Mentions: 1
Published: almost 4 years ago

10.1038/s41598-019-41525-2

RNA Sequencing Provides Novel Insights into the Transcriptome of Aldosterone Producing Adenomas
Cited by: 16
Author(s): Samuel Backman, Tobias Åkerström, Rajani Maharjan, Kenko Cupisti, Holger S. Willenberg, Per Hellman, Peyman Björklund
Software Mentions: 1
Published: over 5 years ago

10.1186/s12864-016-3414-7

Genome-wide standing variation facilitates long-term response to bidirectional selection for antibody response in chickens
Cited by: 20
Author(s): Mette Lillie, Zheya Sheng, Christa F. Honaker, Ben Dorshorst, C. M. Ashwell, P. B. Siegel, Örjan Carlborg
Software Mentions: 1
Published: almost 8 years ago

10.1111/acel.12957

Transcription factor networks in aged naïve CD4 T cells bias lineage differentiation
Cited by: 32
Author(s): Bin Hu, Guangjin Li, Zhongde Ye, Claire E. Gustafson, Lu Tian, Cornelia M. Weyand, Jörg J. Goronzy
Software Mentions: 1
Published: over 5 years ago

10.1016/j.celrep.2019.07.043

Nicotinamide Riboside Augments the Aged Human Skeletal Muscle NAD+ Metabolome and Induces Transcriptomic and Anti-inflammatory Signatures
Cited by: 226
Author(s): Yasir Elhassan, Katarína Kľučková, Rachel Fletcher, Mark S. Schmidt, Antje Garten, Craig Doig, David Cartwright, Lucy Oakey, Claire V. Burley, Ned Jenkinson, Martin Wilson, Samuel J. E. Lucas, İldem Akerman, Alex P. Seabright, Yu‐Chiang Lai, Daniel A. Tennant, Peter Nightingale, Gareth A. Wallis, K. Manolopoulos, Charles Brenner, Andrew Philp, Gareth G. Lavery
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-43282-8

Deleterious effects of formalin-fixation and delays to fixation on RNA and miRNA-Seq profiles
Cited by: 36
Author(s): Wendell Jones, Sarah R. Greytak, Hana M. Odeh, Peng Guan, Jason Powers, Jasmin Bavarva, Helen M. Moore
Software Mentions: 1
Published: over 5 years ago

10.1186/s12864-020-6643-8

A large-scale comparative study of isoform expressions measured on four platforms
Cited by: 6
Author(s): Wei Zhang, Raphael Petegrosso, Ju Young Chang, Jiao Sun, Jeongsik Yong, Jeremy Chien, Rui Kuang
Software Mentions: 1
Published: over 4 years ago

10.1016/j.celrep.2018.07.091

Regulated Capture of Vκ Gene Topologically Associating Domains by Transcription Factories
Cited by: 13
Author(s): Sophiya Karki, Domenick E. Kennedy, Kaitlin C. McLean, Adrian T. Grzybowski, Mark Maienschein‐Cline, Shiladitya Banerjee, Heping Xu, Elizabeth M. Davis, Malay Mandal, Christine M. Labno, Sarah E. Powers, Michelle M. Le Beau, Aaron R. Dinner, Harinder Singh, Alexander J. Ruthenburg, Marcus R. Clark
Software Mentions: 1
Published: over 6 years ago

10.1016/j.celrep.2021.109044

Modeling cell-specific dynamics and regulation of the common gamma chain cytokines
Cited by: 8
Author(s): Ali M. Farhat, Adam C. Weiner, Cori Posner, Zoe S Kim, Brian T Orcutt-Jahns, Scott M. Carlson, Aaron S. Meyer
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-019-43773-8

Transcriptome profiles revealed the mechanisms underlying the adaptation of yak to high-altitude environments
Cited by: 24
Author(s): Jinwei Xin, Zhixin Chai, Chengfu Zhang, Qiang Zhang, Yong Zhu, Hanwen Cao, Qiumei Ji, Jincheng Zhong
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-44541-4

Systematic evaluation and optimization of the experimental steps in RNA G-quadruplex structure sequencing
Cited by: 12
Author(s): Pui Yan Yeung, Jieyu Zhao, Elaine Chow, Xi Mou, HuiQi Hong, Leilei Chen, Ting‐Fung Chan, Chun Kit Kwok
Software Mentions: 1
Published: over 5 years ago

10.1016/j.celrep.2021.109464

Spliceosomal component PRP-40 is a central regulator of microexon splicing
Cited by: 13
Author(s): Bikash Choudhary, Olivia Marx, Adam Norris
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-019-45129-8

Shared Molecular Signatures Across Neurodegenerative Diseases and Herpes Virus Infections Highlights Potential Mechanisms for Maladaptive Innate Immune Responses
Cited by: 27
Author(s): Ana Caroline Costa, Heather B. Madsen, James R. Brown
Software Mentions: 1
Published: over 5 years ago

10.1016/j.celrep.2021.108890

The effect of spike mutations on SARS-CoV-2 neutralization
Cited by: 180
Author(s): Chloe Rees-Spear, Luke Muir, Sarah A. Griffith, Judith Heaney, Yoann Aldon, Jonne L. Snitselaar, Peter Thomas, Carl Graham, Jeffrey Seow, Nayung Lee, Annachiara Rosa, Chloë Roustan, Catherine Houlihan, Rogier W. Sanders, Ravindra Gupta, Peter Cherepanov, Hans J. Stauss, Eleni Nastouli, Katie J. Doores, Marit J. van Gils, Laura E McCoy
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-019-45178-z

Combined obeticholic acid and elafibranor treatment promotes additive liver histological improvements in a diet-induced ob/ob mouse model of biopsy-confirmed NASH
Cited by: 32
Author(s): Jonathan D. Roth, Sanne Skovgård Veidal, Louise K. D. Fensholdt, Kristoffer Rigbolt, Romeo Papazyan, Jens Nielsen, Michael Feigh, Niels Vrang, Mark A. Young, Jacob Jelsing, Luciano Adorini, Henrik H. Hansen
Software Mentions: 1
Published: over 5 years ago

10.1111/cmi.13156

Blind killing of both male and female Drosophila embryos by a natural variant of the endosymbiotic bacterium Spiroplasma poulsonii
Cited by: 8
Author(s): Florent Masson, Sandra P. Calderon-Copete, Fanny Schüpfer, Aurélien Vigneron, Samuel Rommelaere, Mario Gonzalo Garcia-Arraez, Juan C. Paredes, Bruno Lemaître
Software Mentions: 1
Published: almost 5 years ago

10.1016/j.chom.2018.07.011

High-Definition Analysis of Host Protein Stability during Human Cytomegalovirus Infection Reveals Antiviral Factors and Viral Evasion Mechanisms
Cited by: 79
Author(s): Katie Nightingale, Kai‐Min Lin, Benjamin J. Ravenhill, Colin Davies, Luis Nobre, Ceri Alan Fielding, Eva Růčková, Alice Fletcher-Etherington, Lior Soday, Hester Nichols, Daniel Sugrue, Edward Chung Yern Wang, Pablo Moreno-Ger, Yagnesh Umrania, Edward L. Huttlin, Robin Antrobus, Andrew J. Davison, Gavin W. G. Wilkinson, Richard J. Stanton, Peter Tomašec, Michael P. Weekes
Software Mentions: 1
Published: about 6 years ago

10.1038/s41421-019-0131-9

Concurrent activation of growth factor and nutrient arms of mTORC1 induces oxidative liver injury
Cited by: 11
Author(s): Chun‐Seok Cho, Allison H. Kowalsky, Sim Namkoong, Sung-Rye Park, Shuangcheng Wu, Boyoung Kim, Amanda James, Bondong Gu, Ian A. Semple, M.A. Tohamy, Sumeet Solanki, Uhn‐Soo Cho, Joel K. Greenson, Yatrik M. Shah, Myung-Jin Kim, Jun Hee Lee
Software Mentions: 1
Published: about 5 years ago

10.1038/s41421-018-0059-5

Maintenance of human haematopoietic stem and progenitor cells in vitro using a chemical cocktail
Cited by: 12
Author(s): Mengmeng Jiang, Haide Chen, Shih‐Wei Lai, Renying Wang, Yunfei Qiu, Fang Ye, Lijiang Fei, Huiyu Sun, Yang Xu, Xinyi Jiang, Ziyu Zhou, Tingyue Zhang, Yanwei Li, Jin Xie, Qun Fang, Robert Peter Gale, Xiaoping Han, He Huang, Guoji Guo
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-019-45538-9

Major changes in chromosomal somy, gene expression and gene dosage driven by SbIII in Leishmania braziliensis and Leishmania panamensis
Cited by: 32
Author(s): Luz Helena Patiño, Hideo Imamura, Lissa Cruz-Saavedra, Paula Pavía, Carlos Muskus, Claudia Méndez, Jean Claude Dujardin, Juan David Ramírez
Software Mentions: 1
Published: over 5 years ago

10.1038/s41420-020-0246-7

TFEB-mediated lysosomal biogenesis and lysosomal drug sequestration confer resistance to MEK inhibition in pancreatic cancer
Cited by: 27
Author(s): Ben Zhao, Laura Dierichs, Jiangning Gu, Marija Trajkovic‐Arsic, Ralf A. Hilger, Konstantinos Savvatakis, Silvia Vega-Rubín-de-Celis, Sven-Thorsten Liffers, Samuel Peña-Llopis, Diana Behrens, Stephan A. Hahn, Jens T. Siveke, Smiths Lueong
Software Mentions: 1
Published: over 4 years ago

10.1186/s12863-019-0765-5

Meta-analysis of GWA studies provides new insights on the genetic architecture of skin pigmentation in recently admixed populations
Cited by: 27
Author(s): Frida Lona-Durazo, Natalia Hernandez‐Pacheco, Shaohua Fan, Tongwu Zhang, Jiyeon Choi, Michael A. Kovacs, Stacie K. Loftus, Phuong Le, Melissa Edwards, César Fortes-Lima, Celeste Eng, Scott Huntsman, Donglei Hu, Enrique Javier Gómez-Cabezas, Lilia C. Marín-Padrón, Jonas Grauholm, Ole Mors, Esteban G. Burchard, Heather L. Norton, William J. Pavan, Kevin M. Brown, Sarah A. Tishkoff, María Pino-Yanes, Sandra Beleza, Beatriz Marcheco-Teruel, Esteban J. Parra
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-46276-8

Unveiling the presence of biosynthetic pathways for bioactive compounds in the Thalassiosira rotula transcriptome
Cited by: 22
Author(s): Valeria Di Dato, F. Di Costanzo, Roberta Barbarinaldi, Anna Maria Perna, Adrianna Ianora, Giovanna Romano
Software Mentions: 1
Published: over 5 years ago

10.1186/1471-2296-10-20

Stemming the Tide of Antibiotic Resistance (STAR): A protocol for a trial of a complex intervention addressing the 'why' and 'how' of appropriate antibiotic prescribing in general practice
Cited by: 27
Author(s): Sharon Anne Simpson, Christopher Collett Butler, Kerenza Hood, David Cohen, Frank David John Dunstan, Meirion Rhys Evans, Stephen Rollnick, Linda Moore, Monika Hare, Marie Bekkers, J. D. Evans
Software Mentions: 1
Published: over 15 years ago

10.1186/1471-2296-11-34

Enhancing the quality of antibiotic prescribing in Primary Care: Qualitative evaluation of a blended learning intervention
Cited by: 42
Author(s): Marie-Jet Bekkers, Sharon Anne Simpson, Frank David John Dunstan, Kerenza Hood, Monika Hare, J. D. Evans, Christopher Collett Butler
Software Mentions: 1
Published: over 14 years ago

10.1038/s41420-021-00607-9

Whole exome and transcriptome sequencing reveal clonal evolution and exhibit immune-related features in metastatic colorectal tumors
Cited by: 8
Author(s): Chunxue Li, Juan Xu, Xiangfeng Wang, Chao Zhang, Zicheng Yu, Jiucheng Liu, Zaixian Tai, Ziwen Luo, Xin Yi, Zhaoyang Zhong
Software Mentions: 1
Published: about 3 years ago

10.1038/s41598-019-47051-5

Transcriptomic analysis of mouse cochleae suffering from gentamicin damage reveals the signalling pathways involved in hair cell regeneration
Cited by: 6
Author(s): Huanju Bai, Lingling Jiang, Xi Wang, Xue Gao, Bing Jie, Xi Chen, Weiqian Wang, Meiguang Zhang, Xinwen Zhang, Zhongming Han, Jin Xu, Shaoju Zeng
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-47022-w

Enhanced cardiac repair by telomerase reverse transcriptase over-expression in human cardiac mesenchymal stromal cells
Cited by: 14
Author(s): Thi Yen Loan Le, Hilda A. Pickett, Andrian Yang, Joshua Wk Ho, Sujitha Thavapalachandran, Sindhu Igoor, Sile F. Yang, Melad Farraha, Holly K. Voges, James E. Hudson, Cristobal G. dos Remedios, Tracy M. Bryan, Eddy Kizana, James J.H. Chong
Software Mentions: 1
Published: over 5 years ago

10.1038/s41419-019-1477-5

The lncRNA TP73-AS1 is linked to aggressiveness in glioblastoma and promotes temozolomide resistance in glioblastoma cancer stem cells
Cited by: 112
Author(s): Gal Mazor, Liron Levin, Daniel Picard, Ulvi Ahmadov, Helena Carén, Arndt Borkhardt, Guido Reifenberger, Gabriel Leprivier, Marc Remke, Barak Rotblat
Software Mentions: 1
Published: over 5 years ago

10.1038/s41419-018-0769-5

High-throughput analysis of the RNA-induced silencing complex in myotonic dystrophy type 1 patients identifies the dysregulation of miR-29c and its target ASB2
Cited by: 16
Author(s): M Cappella, Alessandra Perfetti, Beatrice Cardinali, José Manuel García-Manteiga, Matteo Carrara, Claudia Provenzano, Paola Fuschi, Rosanna Cardani, Laura Valentina Renna, Giovanni Meola, Germana Falcone, Fabio Martelli
Software Mentions: 1
Published: over 6 years ago

10.1038/s41419-019-1799-3

Mitofusin 1 is required for female fertility and to maintain ovarian follicular reserve
Cited by: 60
Author(s): Man Zhang, Muhammed Burak Bener, Zongliang Jiang, Tianren Wang, Ecem Esencan, Richard T. Scott, Tamás L. Horváth, Emre Seli
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-46265-x

Genetic basis of functional variability in adhesion G protein-coupled receptors
Cited by: 24
Author(s): Alexander Bernd Knierim, Juliane Röthe, Mehmet Volkan Çakır, Vera Lede, Caroline Wilde, Ines Liebscher, Doreen Thor, Torsten Schöneberg
Software Mentions: 1
Published: over 5 years ago

10.1038/s41419-018-0796-2

CCL5-deficiency enhances intratumoral infiltration of CD8+ T cells in colorectal cancer
Cited by: 48
Author(s): Shengbo Zhang, Ming Zhong, Chao Wang, Yanjie Xu, Wei‐Qiang Gao, Yan Zhang
Software Mentions: 1
Published: over 6 years ago

10.1186/s12862-015-0403-4

Molecular phylogeny of the subfamily Stevardiinae Gill, 1858 (Characiformes: Characidae): classification and the evolution of reproductive traits
Cited by: 43
Author(s): Andréa T. Thomaz, Dahiana Arcila, Guillermo Ortı́, Luiz Roberto Malabarba
Software Mentions: 1
Published: over 9 years ago

10.1186/s12862-018-1161-x

Unexpected conservation of the RNA splicing apparatus in the highly streamlined genome of Galdieria sulphuraria
Cited by: 13
Author(s): Huan Qiu, Alessandro W. Rossoni, Andreas P.M. Weber, Hwan Su Yoon, Debashish Bhattacharya
Software Mentions: 1
Published: over 6 years ago

10.1038/s41419-019-1946-x

The stem cell-associated transcription co-factor, ZNF521, interacts with GLI1 and GLI2 and enhances the activity of the Sonic hedgehog pathway
Cited by: 15
Author(s): Stefania Scicchitano, Marco Giordano, Valeria Lucchino, Ylenia Montalcini, Emanuela Chiarella, Annamaria Aloisio, Bruna Codispoti, Pietro Zoppoli, Valentina Melocchi, Fabrizio Bianchi, Enrico De Smaele, Maria Mesuraca, Giovanni Morrone
Software Mentions: 1
Published: about 5 years ago

10.1038/s41419-020-2257-y

Lipid desaturation-associated endoplasmic reticulum stress regulates MYCN gene expression in hepatocellular carcinoma cells
Cited by: 30
Author(s): Xian‐Yang Qin, Ting Su, Wenkui Yu, Soichi Kojima
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-019-48089-1

Transcriptomic Profiling of Adipose Derived Stem Cells Undergoing Osteogenesis by RNA-Seq
Cited by: 29
Author(s): Shahensha Shaik, Elizabeth C. Martin, Daniel J. Hayes, Jeffrey M. Gimble, Ram V. Devireddy
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-47357-4

Extracellular endonucleases in the midgut of Myzus persicae may limit the efficacy of orally delivered RNAi
Cited by: 18
Author(s): Amol Bharat Ghodke, Robert T. Good, John F. Golz, Derek Russell, Owain Edwards, Charles Robin
Software Mentions: 1
Published: over 5 years ago

10.1038/s41419-020-2536-7

The HMGB1-RAGE axis modulates the growth of autophagy-deficient hepatic tumors
Cited by: 14
Author(s): Bilon Khambu, Honghai Hong, Sheng Liu, Gang Liu, Xiaoyun Chen, Zheng Dong, Jun Wan, Xiao Ming Yin
Software Mentions: 1
Published: over 4 years ago

10.1038/s41419-020-02754-w

The longevity-associated variant of BPIFB4 improves a CXCR4-mediated striatum–microglia crosstalk preventing disease progression in a mouse model of Huntington’s disease
Cited by: 14
Author(s): Alba Di Pardo, Elena Ciaglia, Monica Cattaneo, Anna Maciąg, Francesco Montella, Valentina Lopardo, Anna Ferrario, Francesco Villa, Michele Madonna, Enrico Amico, Albino Carrizzo, Antonio L. Damato, Giuseppe Pepe, Federico Marracino, Alberto Auricchio, Carmine Vecchione, Vittorio Maglione, Annibale Alessandro Puca
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-019-49020-4

Proteasome dysfunction in alveolar type 2 epithelial cells is associated with acute respiratory distress syndrome
Cited by: 13
Author(s): Sneha Sitaraman, Cheng-Lun Na, Yang Li, Alyssa Filuta, James P. Bridges, Timothy E. Weaver
Software Mentions: 1
Published: about 5 years ago

10.1186/s12862-016-0769-y

Expanding anchored hybrid enrichment to resolve both deep and shallow relationships within the spider tree of life
Cited by: 141
Author(s): Chris A. Hamilton, Alan R. Lemmon, Emily Moriarty Lemmon, Jason E. Bond
Software Mentions: 1
Published: about 8 years ago

10.1038/s41598-019-50058-7

TET2 catalyzes active DNA demethylation of the Sry promoter and enhances its expression
Cited by: 7
Author(s): Naoki Okashita, Shunsuke Kuroki, Ryo Maeda, Makoto Tachibana
Software Mentions: 1
Published: about 5 years ago

10.1038/cddis.2016.188

MDM2 facilitates adipocyte differentiation through CRTC-mediated activation of STAT3
Cited by: 26
Author(s): Philip Hallenborg, Majken Siersbæk, Iñigo Barrio-Hernandez, Ronni Nielsen, Karsten Kristiansen, Susanne Mandrup, Lars Grøntved, Blagoy Blagoev
Software Mentions: 1
Published: over 8 years ago

10.1038/s41419-021-04146-0

The long non-coding RNA HOTAIRM1 promotes tumor aggressiveness and radiotherapy resistance in glioblastoma
Cited by: 18
Author(s): Ulvi Ahmadov, Daniel Picard, Jasmin Bartl, Manuela Silginer, Marija Trajkovic‐Arsic, Nan Qin, Lena Blümel, Marietta Wolter, Jonathan Lim, David Pauck, Alina M Winkelkotte, Marlen Melcher, Maike Langini, Viktoria Marquardt, Felix Sander, Anja Stefanski, Sascha Steltgens, Christina Hassiepen, Anna Kaufhold, Frank Meyer, Annette Seibt, Lara Kleinesudeik, Anika Hain, Carsten Münk, Christiane B. Knobbe-Thomsen, Alexander Schramm, Ute Fischer, Gabriel Leprivier, Kai Stühler, Simone Fulda, Jens T. Siveke, Felix Distelmaier, Arndt Borkhardt, Michael Weller, Guido Reifenberger, Marc Remke
Software Mentions: 1
Published: about 3 years ago

10.1038/s41419-019-1858-9

Deletion of OSBPL2 in auditory cells increases cholesterol biosynthesis and drives reactive oxygen species production by inhibiting AMPK activity
Cited by: 21
Author(s): Hongshun Wang, Changsong Lin, Jun Yao, Hairong Shi, Cui Zhang, Qinjun Wei, Yajie Lu, Zhibin Chen, Guangqian Xing, Xin Cao
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-021-88628-3

Arginyltransferase (Ate1) regulates the RGS7 protein level and the sensitivity of light-evoked ON-bipolar responses
Cited by: 5
Author(s): Marie E. Fina, Junling Wang, Sergei Nikonov, Stephanie Sterling, Noga Vardi, Anna Kashina, Dawei Dong
Software Mentions: 1
Published: over 3 years ago

10.1002/cjp2.158

<i>NTRK</i> fusions in osteosarcoma are rare and non‐functional events
Cited by: 15
Author(s): Baptiste Ameline, Karim H. Saba, Michal Kováč, Linda Magnusson, Olaf Witt, Stefan Bielack, Michaela Nathrath, Karolin Hansén Nord, Daniel Baumhoer
Software Mentions: 1
Published: almost 5 years ago

10.1186/s12862-018-1120-6

Population size may shape the accumulation of functional mutations following domestication
Cited by: 13
Author(s): Jianhai Chen, Peihong Ni, Xinyun Li, Jianlin Han, Ivan Jakovlić, Chengjun Zhang, Shuhong Zhao
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-021-88671-0

Germinal GLT8D1, GATAD2A and SLC25A39 mutations in a patient with a glomangiopericytal tumor and five different sarcomas over a 10-year period
Cited by: 0
Author(s): Arnaud Beddok, Gaëlle Pérot, Sophie Le Guellec, Noémie Thébault, Alexandre Coutté, Henri Sevestre, Bruno Chauffert, Frédéric Chibon
Software Mentions: 1
Published: over 3 years ago

10.1038/s41419-021-03539-5

Epigenetic regulation of p62/SQSTM1 overcomes the radioresistance of head and neck cancer cells via autophagy-dependent senescence induction
Cited by: 21
Author(s): Myungjin Lee, Hae Yun Nam, Hee-Bum Kang, Won Hyeok Lee, Geunhee Lee, Gi‐Jun Sung, Myung Woul Han, Kyung–Ja Cho, Eun‐Ju Chang, Kyung‐Chul Choi, Seong Who Kim, Sang Yoon Kim
Software Mentions: 1
Published: over 3 years ago

10.1038/cddis.2017.197

All-trans retinoic acid and arsenic trioxide fail to derepress the monocytic differentiation driver Irf8 in acute promyelocytic leukemia cells
Cited by: 14
Author(s): Xiang-Zhen Liu, Juan Chen, Shanhe Yu, Yan Li, Hong Guo, Jian-Min Dai, Wu Zhang, Jiang Zhu
Software Mentions: 1
Published: over 7 years ago

10.3390/ijms21041489

Metformin Alleviates Left Ventricular Diastolic Dysfunction in a Rat Myocardial Ischemia Reperfusion Injury Model
Cited by: 9
Author(s): Woori Jo, Kyung-Ku Kang, Sehyun Chae, Woo‐Chan Son
Software Mentions: 1
Published: almost 5 years ago

10.18632/aging.102024

Mitofusin 2 plays a role in oocyte and follicle development, and is required to maintain ovarian follicular reserve during reproductive aging
Cited by: 49
Author(s): Man Zhang, Muhammed Burak Bener, Zongliang Jiang, Tianren Wang, Ecem Esencan, Richard T. Scott, Tamás L. Horváth, Emre Seli
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms21041397

Integrated Metabolomic and Transcriptomic Analysis to Characterize Cutin Biosynthesis between Low- and High-Cutin Genotypes of Capsicum chinense Jacq
Cited by: 14
Author(s): Purushothaman Natarajan, Tolulope Abodunrin Akinmoju, Padma Nimmakayala, Carlos Lopez-Ortiz, Marleny García-Lozano, Benjamin Thompson, John R. Stommel, Umesh K. Reddy
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41419-021-03880-9

Effects of short-chain fatty acids in inhibiting HDAC and activating p38 MAPK are critical for promoting B10 cell generation and function
Cited by: 36
Author(s): Zhang‐Qi Feng, Yi Qiu, Yilian Huang, Hang Zou, Cheng Xiao, Qingru Niu, Aoxiang Luo, Jianbo Sun
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-021-90047-3

From multi-omics integration towards novel genomic interaction networks to identify key cancer cell line characteristics
Cited by: 2
Author(s): T. J. M. Kuijpers, J. C. S. Kleinjans, Danyel Jennen
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-021-89927-5

Predicting MHC I restricted T cell epitopes in mice with NAP-CNB, a novel online tool
Cited by: 3
Author(s): Carlos Wert-Carvajal, Rubén J. Sánchez-García, José Ramón Macías, Rebeca Sanz‐Pamplona, Almudena Méndez Pérez, Ramón Alemany, Esteban Veiga, C.O.S. Sorzano, Arrate Muñoz-Barrutia
Software Mentions: 1
Published: over 3 years ago

10.3390/cancers12030620

RNA Immune Signatures from Pan-Cancer Analysis Are Prognostic for High-Grade Serous Ovarian Cancer and Other Female Cancers
Cited by: 12
Author(s): Wendell Jones, Chad M. Michener, Charles V. Biscotti, Elena Ioana Braicu, Jalid Sehouli, Mahrukh K. Ganapathi, Ram Ganapathi
Software Mentions: 1
Published: over 4 years ago

10.3390/cancers13092250

IGF2 Mediates Resistance to Isoform-Selective-Inhibitors of the PI3K in HPV Positive Head and Neck Cancer
Cited by: 6
Author(s): Mai Badarni, Manu Prasad, Artemiy Golden, Baisali Bhattacharya, Liron Levin, Ksenia M. Yegodayev, Orr Dimitstein, Ben‐Zion Joshua, Limor Cohen, Ekaterina Khrameeva, Dexin Kong, Angel Porgador, Alex Braiman, Jennifer R. Grandis, Barak Rotblat, Moshe Elkabets
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-021-90798-z

Transcriptome analysis of MBD5-associated neurodevelopmental disorder (MAND) neural progenitor cells reveals dysregulation of autism-associated genes
Cited by: 4
Author(s): Sureni V Mullegama, Stephen P. Klein, Stephen R. Williams, Jeffrey W. Innis, Frank J. Probst, Chad R. Haldeman-Englert, Julián A. Martínez-Agosto, Ying Yang, Yuchen Tian, Sarah H. Elsea, Toshihiko Ezashi
Software Mentions: 1
Published: over 3 years ago

10.3390/cancers12071719

Dysregulation of MITF Leads to Transformation in MC1R-Defective Melanocytes
Cited by: 5
Author(s): Timothy J. Lavelle, Tine Norman Alver, Karen‐Marie Heintz, Patrik Wernhoff, Vegard Nygaard, Sigve Nakken, Geir Frode Øy, Sigurd Leinæs Bøe, Alfonso Urbanucci, Eivind Hovig
Software Mentions: 1
Published: over 4 years ago

10.3390/cancers13071546

Pulsed-Focused Ultrasound Slows B16 Melanoma and 4T1 Breast Tumor Growth through Differential Tumor Microenvironmental Changes
Cited by: 5
Author(s): Gadi Cohen, Parwathy Chandran, Rebecca M. Lorsung, Ömer Aydın, Lauren E. Tomlinson, Robert Rosenblatt, Scott R. Burks, Joseph A. Frank
Software Mentions: 1
Published: over 3 years ago

10.1186/s12861-019-0196-6

Deletion of Tet proteins results in quantitative disparities during ESC differentiation partially attributable to alterations in gene expression
Cited by: 7
Author(s): Michael Reimer, Kirthi Pulakanti, Linzheng Shi, Alex M. Abel, Mingyu Liang, Subramaniam Malarkannan, Sridhar Rao
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0200477

SAP97 regulates behavior and expression of schizophrenia risk enriched gene sets in mouse hippocampus
Cited by: 14
Author(s): Preetika Gupta, Ogul E. Uner, Soumyashant Nayak, Gregory R. Grant, Robert G. Kalb
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0125414

The Expansion of Thymopoiesis in Neonatal Mice Is Dependent on Expression of High Mobility Group A 2 Protein (Hmga2)
Cited by: 5
Author(s): Beata Berent-Maoz, Encarnación Montecino-Rodriguez, Michael P. Fice, David Casero, Christopher S. Seet, William E. Lowry, Kenneth Dorshkind
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0187773

Lung epithelial response to cigarette smoke and modulation by the nicotinic alpha 7 receptor
Cited by: 18
Author(s): Lorise C. Gahring, Elizabeth J. Myers, Diane M. Dunn, Robert B. Weiss, Scott W. Rogers
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pone.0232081

Engineering a 3D in vitro model of human skeletal muscle at the single fiber scale
Cited by: 15
Author(s): Anna Urciuolo, Elena Serena, Rusha Ghua, Susi Zatti, Monica Giomo, Nicolò Mattei, Massimo Vetralla, Giulia Selmin, Camilla Luni, Nicola Vitulo, Giorgio Valle, Libero Vitiello, Nicola Elvassore
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pone.0122602

Binary Gene Expression Patterning of the Molt Cycle: The Case of Chitin Metabolism
Cited by: 23
Author(s): Shai Abehsera, Lilah Glazer, Jenny Tynyakov, Inbar Plaschkes, Vered Chalifa‐Caspi, Isam Khalaila, Eliahu D. Aflalo, Amir Sagi
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0192170

Induction of epigenetic variation in Arabidopsis by over-expression of DNA METHYLTRANSFERASE1 (MET1)
Cited by: 14
Author(s): Samuel George Philip Brocklehurst, Michael R. Watson, Ian Carr, Suzan Out, Iris Heidmann, Peter Meyer
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-021-90510-1

Human induced pluripotent stem cell derived hepatocytes provide insights on parenteral nutrition associated cholestasis in the immature liver
Cited by: 4
Author(s): T. Hang Nghiem-Rao, Courtney Pfeifer, Michelle Asuncion, Joshua Nord, Daniel J. Schill, Kirthi Pulakanti, Shailendra B. Patel, Lisa Ann Cirillo, Sridhar Rao
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pone.0207503

Distinct vascular genomic response of proton and gamma radiation—A pilot investigation
Cited by: 3
Author(s): Emanuela Ricciotti, Dimitra Sarantopoulou, Gregory R. Grant, Jenine K. Sanzari, Gabriel Krigsfeld, Amber J. Kiliti, Ann R. Kennedy, Tilo Großer
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0221008

Genetic variation for root architectural traits in response to phosphorus deficiency in mungbean at the seedling stage
Cited by: 29
Author(s): V. R. Reddy, Muraleedhar S. Aski, Gyan P. Mishra, Harsh Kumar Dikshit, Akanksha Singh, Renu Pandey, Madan Pal Singh, Gayacharan, Vinita Ramtekey, Priti, Neha Rai, Ramakrishnan M. Nair
Software Mentions: 1
Published: over 4 years ago

10.3390/ijms21051902

Gene Polymorphisms in Boar Spermatozoa and Their Associations with Post-Thaw Semen Quality
Cited by: 19
Author(s): Anna Mańkowska, Paweł Brym, Łukasz Paukszto, J Jastrzebski, Leyland Fraser
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-021-92529-w

The ATF6β-calreticulin axis promotes neuronal survival under endoplasmic reticulum stress and excitotoxicity
Cited by: 8
Author(s): Dinh Thi Nguyen, Thuong Manh Le, Tsuyoshi Hattori, Mika Takarada-Iemata, Hiroshi Ishii, Jureepon Roboon, Takashi Tamatani, Takayuki Kannon, Kazuyoshi Hosomichi, Atsushi Tajima, Shusuke Taniuchi, Masato Miyake, Seiichi Oyadomari, Takashi Tanaka, Nobuo Kato, Shunsuke Saito, Kazutoshi Mori, Osamu Hori
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pone.0211709

Modeling financial interval time series
Cited by: 1
Author(s): Lin Liang, Li Hsien Sun
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0201756

Identification of genomic regions associated with agronomic and biofortification traits in DH populations of rice
Cited by: 46
Author(s): B. P. Mallikarjuna Swamy, Gwen Iris L. Descalsota, Chau Thanh Nha, Amery Amparado, Mary Ann Inabangan-Asilo, Christine Manito, Frances Tesoro, Russell Reinke
Software Mentions: 1
Published: over 6 years ago

10.18632/aging.102326

Cognitive impairment and transcriptomic profile in hippocampus of young mice after multiple neonatal exposures to sevoflurane
Cited by: 25
Author(s): Shaoyong Song, Xiaowen Meng, Zhengyuan Xia, Hong Liu, Juan Zhang, Qingcai Chen, Hua-yue Liu, Fuhai Ji, Ke Peng
Software Mentions: 1
Published: about 5 years ago

10.18632/aging.101836

Alternative polyadenylation dependent function of splicing factor SRSF3 contributes to cellular senescence
Cited by: 32
Author(s): Ting Shen, Huan Li, Yifang Song, Li Li, Jinzhong Lin, Gang Wei, Ting Ni
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms21082762

Ileal Transcriptome Profiles of Japanese Quail Divergent in Phosphorus Utilization
Cited by: 7
Author(s): Michael Oster, Henry Reyer, Nares Trakooljul, Frank Weber, Xi Liu, Eduard Muráni, Siriluck Ponsuksili, M. Rodehutscord, Jörn Bennewitz, Klaus Wimmers
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-021-91358-1

Neoantigens elicit T cell responses in breast cancer
Cited by: 13
Author(s): Takafumi Morisaki, Makoto Kubo, Masayo Umebayashi, Poh Yin Yew, Satoshi Yoshimura, Jae-Hyun Park, Kazuma Kiyotani, Masaya Kai, Mai Yamada, Yoshinao Oda, T. Morisaki, Masafumi Nakamura
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-021-93180-1

Florigen governs shoot regeneration
Cited by: 4
Author(s): Yaarit Kutsher, Michal Fisler, Adi Faigenboim, Moshe Reuveni
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pone.0036566

Classification of HIV-1 Sequences Using Profile Hidden Markov Models
Cited by: 7
Author(s): Sanjiv K. Dwivedi, Supratim Sengupta
Software Mentions: 1
Published: over 12 years ago

Projects: cran: STAR

Papers Mentioning STAR 5,759