10.1038/s41598-020-63741-x

Smooth-muscle-derived WNT5A augments allergen-induced airway remodelling and Th2 type inflammation
Cited by: 12
Author(s): Tim Koopmans, Laura Hesse, Martijn C. Nawijn, Kuldeep Kumawat, Mark H. Menzen, I. Sophie T. Bos, Ron Smits, Elvira Bakker, Maarten van den Berge, Gerard H. Koppelman, Victor Guryev, Reinoud Gosens
Software Mentions: 2
Published: about 6 years ago

10.1038/s41598-020-62974-0

HMGA1-pseudogene7 transgenic mice develop B cell lymphomas
Cited by: 10
Author(s): Marco De Martino, Davide De Biase, Floriana Forzati, Sara Carmela Credendino, Giuseppe Palma, Antônio Barbieri, Claudio Arra, Orlando Paciello, Eugenio Gaudio, Maurilio Ponzoni, Gabriella De Vita, Paolo Chieffi, Francesco Bertoni, Alfredo Fusco, Francesco Esposito
Software Mentions: 2
Published: about 6 years ago

10.1038/s41598-020-63183-5

Investigating APOE, APP-Aβ metabolism genes and Alzheimer’s disease GWAS hits in brain small vessel ischemic disease
Cited by: 12
Author(s): Sonja Blumenau, Marco Foddis, Susanne Müller, Manuel Holtgrewe, Kajetan Bentele, Daniel Berchtold, Dieter Beule, Ulrich Dirnagl, Celeste Sassi
Software Mentions: 2
Published: about 6 years ago

10.1038/s41598-020-64865-w

The early local and systemic Type I interferon responses to ultraviolet B light exposure are cGAS dependent
Cited by: 44
Author(s): Sladjana Skopelja-Gardner, Jie An, Joyce Tai, Lena Tanaka, Xizhang Sun, Payton Hermanson, Rebecca Baum, Masaoki Kawasumi, Richard Green, Michael Gale, Andrea Kalus, Victoria P. Werth, Keith B. Elkon
Software Mentions: 2
Published: about 6 years ago

10.1038/s41598-020-64972-8

Comparison of two different host plant genera responding to grapevine leafroll-associated virus 3 infection
Cited by: 6
Author(s): Cecilia A. Prator, Kar Mun Chooi, Dan Jones, Marcus Davy, Robin M. MacDiarmid, Rodrigo P. P. Almeida
Software Mentions: 2
Published: about 6 years ago

10.1038/s41598-020-66735-x

RNA sequencing of corneas from two keratoconus patient groups identifies potential biomarkers and decreased NRF2-antioxidant responses
Cited by: 29
Author(s): Vaibhav Shinde, Nan Hu, Alka Mahale, George Maiti, Yassine J. Daoud, Charles G. Eberhart, Azza Maktabi, Albert S. Jun, Samar A Al-Swailem, Shukti Chakravarti
Software Mentions: 2
Published: about 6 years ago

10.1038/s41598-020-67208-x

Vaccination of koalas during antibiotic treatment for Chlamydia-induced cystitis induces an improved antibody response to Chlamydia pecorum
Cited by: 7
Author(s): Samuel Phillips, Bonnie Chaban, Olusola Olagoke, Rosemary Booth, Michael Pyne, Peter Timms
Software Mentions: 2
Published: about 6 years ago

10.1038/s41598-020-66797-x

Genome-wide DNA methylation analysis of KRAS mutant cell lines
Cited by: 6
Author(s): Ben Yi Tew, Joel Durand, Kirsten L. Bryant, Tikvah K. Hayes, Sen Peng, Nhan L. Tran, Gerald C. Gooden, David N. Buckley, Channing J. Der, Albert S. Baldwin, Bodour Salhia
Software Mentions: 2
Published: about 6 years ago

10.1038/s41598-020-66951-5

An Integrated Genomic and Transcriptomic Analysis Reveals Candidates of Susceptibility Genes for Crohn’s Disease in Japanese Populations
Cited by: 6
Author(s): Yoichi Kakuta, Ryo Ichikawa, Yuta Fuyuno, Atsushi Hirano, Junji Umeno, Takehiro Torisu, Kazuhiro Watanabe, Akihiro Asakura, Toshihiko Nakano, Yasuhiro Izumiyama, Daisuke Okamoto, Takeo Naito, Rintaro Moroi, Masatake Kuroha, Yoshitake Kanazawa, Tsutomu Kimura, Hisashi Shiga, Toshio Naito, Motohiro Esaki, Yosuke Kawai, Katsushi Tokunaga, Minoru Nakamura, Takayuki Matsumoto, Masao Nagasaki, Yoshitaka Kinouchi, Michiaki Unno, Atsushi Masamune
Software Mentions: 2
Published: about 6 years ago

10.1038/s41598-020-66496-7

Association between Serum Essential Metal Elements and the Risk of Schizophrenia in China
Cited by: 20
Author(s): Jiahui Ma, Lailai Yan, Tongjun Guo, Siyu Yang, Yaqiong Liu, Qing Xie, Dawei Ni, Jingyu Wang
Software Mentions: 2
Published: about 6 years ago

10.1038/s41598-020-68235-4

Involvement of Arabidopsis BIG protein in cell death mediated by Myo-inositol homeostasis
Cited by: 3
Author(s): Quentin Bruggeman, Florence Piron‐Prunier, Frédérique Tellier, Jean-Denis Faure, David Latrasse, Deborah Manza‐Mianza, Christelle Mazubert, Sylvie Citerne, Stéphanie Boutet-Mercey, Raphaël Lugan, Catherine Bergounioux, Cécile Raynaud, Moussa Benhamed, Marianne Delarue
Software Mentions: 2
Published: about 6 years ago

10.1038/s41598-020-68567-1

Translating GWAS-identified loci for cardiac rhythm and rate using an in vivo image- and CRISPR/Cas9-based approach
Cited by: 12
Author(s): Benedikt von der Heyde, Anastasia Emmanouilidou, Eugenia Mazzaferro, Silvia Vicenzi, Ida Höijer, Tiffany Klingström, Sitaf Jumaa, Olga Dethlefsen, Harold Snieder, Eco J. C. de Geus, Adam Ameur, Erik Ingelsson, Amin Allalou, Hannah L. Brooke, Marcel den Hoed
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41598-020-69619-2

Role of HSP70 in response to (thermo)radiotherapy: analysis of gene expression in canine osteosarcoma cells by RNA-seq
Cited by: 5
Author(s): Katarzyna J. Nytko, Pauline Thumser‐Henner, Giancarlo Russo, Mathias S. Weyland, Carla Rohrer Bley
Software Mentions: 2
Published: almost 6 years ago

10.7150/thno.47039

Comprehensive characterization of functional eRNAs in lung adenocarcinoma reveals novel regulators and a prognosis-related molecular subtype
Cited by: 18
Author(s): Na Qin, Zijuan Ma, Cheng Wang, Erbao Zhang, Yuancheng Li, Mingtao Huang, Congcong Chen, Chang Zhang, Jingyi Fan, Yayun Gu, Xin Xu, Yang Liu, Xiaoxia Wei, Rong Yin, Yue Jiang, Juncheng Dai, Guangfu Jin, Lin Xu, Hongbing Shen, Hongxia Ma
Software Mentions: 2
Published: over 6 years ago

10.7150/thno.48206

Integrative analysis of long extracellular RNAs reveals a detection panel of noncoding RNAs for liver cancer
Cited by: 34
Author(s): Yumin Zhu, Siqi Wang, Xiaochen Xi, Minfeng Zhang, Xiaofan Liu, Weina Tang, Peng Cai, Shaozhen Xing, Pengfei Bao, Yunfan Jin, Weihao Zhao, Yinghui Chen, Huanan Zhao, Xiaodong Jia, Shanshan Lu, Yinying Lu, Lei Chen, Jianhua Yin, Zhi Lü
Software Mentions: 2
Published: over 5 years ago

10.7150/thno.43895

Proteomic analysis reveals ginsenoside Rb1 attenuates myocardial ischemia/reperfusion injury through inhibiting ROS production from mitochondrial complex I
Cited by: 71
Author(s): Lujing Jiang, Yin X, Yahui Chen, Yan Chen, Wei Jiang, Hao Zheng, Feng-Qing Huang, Baolin Liu, Wei Zhou, Lian‐Wen Qi, Jia Li
Software Mentions: 2
Published: over 5 years ago

10.7150/thno.56737

Small-molecule inhibitor of AF9/ENL-DOT1L/AF4/AFF4 interactions suppresses malignant gene expression and tumor growth
Cited by: 14
Author(s): Feng Wu, Shuang Nie, Yuan Yao, Tong Huo, Xin Li, Xiaowei Wu, Jidong Zhao, Yi-Lun Lin, Zhang Yin-jie, Qianxing Mo, Yuanlin Song
Software Mentions: 2
Published: over 5 years ago

10.7150/thno.61833

Inhibiting microglia proliferation after spinal cord injury improves recovery in mice and nonhuman primates
Cited by: 28
Author(s): Gaëtan Poulen, Emilie Aloy, Claire M. Bringuier, Nadine Mestre‐Francés, Emaëlle V.F. Artus, Maïda Cardoso, Jean‐Christophe Perez, Christophe Goze-Bac, Hassan Boukhaddaoui, Nicolas Lonjon, Yannick Nicolas Gerber, Florence E. Perrin
Software Mentions: 2
Published: over 5 years ago

10.1089/thy.2020.0307

Limitations of Detecting Genetic Variants from the RNA Sequencing Data in Tissue and Fine-Needle Aspiration Samples
Cited by: 15
Author(s): Cihan Kaya, Princesca Dorsaint, Stephanie Mercurio, Alexander M Campbell, Kenneth Eng, Marina N. Nikiforova, Olivier Elemento, Andrea Sboner
Software Mentions: 2
Published: over 5 years ago

10.3390/toxins12070429

Insights into Aflatoxin B1 Toxicity in Cattle: An In Vitro Whole-Transcriptomic Approach
Cited by: 22
Author(s): Marianna Pauletto, Roberta Tolosi, Mery Giantin, Giorgia Guerra, Andrea Barbarossa, Anna Zaghini, Mauro Dacasto
Software Mentions: 2
Published: about 6 years ago

10.1038/tp.2017.80

Maternal immune activation results in complex microglial transcriptome signature in the adult offspring that is reversed by minocycline treatment
Cited by: 157
Author(s): Daniele Mattei, Andranik Ivanov, Carmelo Ferrai, Philipp Jordan, Dilansu Güneykaya, Alice Buonfiglioli, W. Schaafsma, Piotr Przanowski, Winnie Deuther‐Conrad, Peter Brust, Swen Hesse, Marianne Patt, Osama Sabri, Tobias L. Roß, Bart J. L. Eggen, Erik Boddeke, Bożena Kamińska, Dieter Beule, Ana Pombo, Helmut Kettenmann, Susanne Wolf
Software Mentions: 2
Published: about 9 years ago

10.1038/tp.2017.202

The BET/BRD inhibitor JQ1 improves brain plasticity in WT and APP mice
Cited by: 52
Author(s): Eva Benito, Binu Ramachandran, Henning Schroeder, G. Schmídt, Hendrik Urbanke, Susanne Burkhardt, Vincenzo Capece, Camin Dean, André Fischer
Software Mentions: 2
Published: almost 9 years ago

10.1038/s41398-018-0137-3

THC exposure of human iPSC neurons impacts genes associated with neuropsychiatric disorders
Cited by: 30
Author(s): Boris Guennewig, Mainá Bitar, Ifeanyi Obiorah, James B. Hanks, Elizabeth O’Brien, Dominik C. Kaczorowski, Yasmin L. Hurd, Panos Roussos, Kristen J. Brennand, Guy Barry
Software Mentions: 2
Published: about 8 years ago

10.1038/s41398-018-0319-z

Integrative system biology analyses of CRISPR-edited iPSC-derived neurons and human brains reveal deficiencies of presynaptic signaling in FTLD and PSP
Cited by: 43
Author(s): Shan Jiang, Natalie Wen, Zeran Li, Umber Dube, Jorge L. Del-Águila, John Budde, Rita Martinez, Simon Hsu, María Victoria Fernández, Nigel J. Cairns, Oscar Harari, Carlos Cruchaga, Celeste M. Karch
Software Mentions: 2
Published: over 7 years ago

10.1038/s41398-019-0517-3

Comparative characterization of human induced pluripotent stem cells (hiPSC) derived from patients with schizophrenia and autism
Cited by: 37
Author(s): Lena Marie Grunwald, Ricarda Stock, Kathrina Haag, Sandra Buckenmaier, Mark Eberle, Dirk Wildgruber, Helena Storchak, Martin Kriebel, Stephanie Weißgraeber, Lisha Mathew, Yasmin Singh, Maarten Loos, Ka Wan Li, Udo Kraushaar, Andreas J. Fallgatter, Hansjürgen Volkmer
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41398-020-0854-2

Long non-coding RNA Neat1 regulates adaptive behavioural response to stress in mice
Cited by: 33
Author(s): Michail S. Kukharsky, Natalia Ninkina, Haiyan An, Vsevolod Telezhkin, Wenbin Wei, Camille Rabesahala de Meritens, Johnathan Cooper‐Knock, Shinichi Nakagawa, Tetsuro Hirose, Vladimir L. Buchman, Tatyana A. Shelkovnikova
Software Mentions: 2
Published: about 6 years ago

10.1038/s41398-020-01050-7

Translational study of the whole transcriptome in rats and genetic polymorphisms in humans identifies LRP1B and VPS13A as key genes involved in tolerance to cocaine-induced motor disturbances
Cited by: 4
Author(s): Florence Vorspan, Romain Icick, Nawel Mekdad, Cindie Courtin, Vanessa Bloch, Frank Bellivier, Jean‐Louis Laplanche, Nathalie Prince, Dmitry Pishalin, Cyril Firmo, Corinne Blugeon, Bruno Mégarbane, Cynthia Marie-Claire, Nadia Benturquia
Software Mentions: 2
Published: over 5 years ago

10.1038/s41398-020-01163-z

Alcohol use disorder causes global changes in splicing in the human brain
Cited by: 21
Author(s): Derek Van Booven, Mengying Li, Jianhua Rao, Ilya O. Blokhin, R. Dayne Mayfield, Estelle Barbier, Markus Heilig, Claes Wahlestedt
Software Mentions: 2
Published: over 5 years ago

10.1038/s41398-021-01443-2

A diet high in sugar and fat influences neurotransmitter metabolism and then affects brain function by altering the gut microbiota
Cited by: 35
Author(s): Yuna Guo, Xiangxiang Zhu, Miao Zhang, Longkai Qi, Xiaocui Tang, Dongdong Wang, Mei Zhang, Yizhen Xie, Hongye Li, Xuefei Yang, Diling Chen
Software Mentions: 2
Published: about 5 years ago

10.1038/s41398-021-01506-4

No evidence for differential gene expression in major depressive disorder PBMCs, but robust evidence of elevated biological ageing
Cited by: 13
Author(s): John Cole, Alison McColl, Robin Shaw, Mary Ellen Lynall, Philip J. Cowen, P. de Boer, Wayne C. Drevets, Neil A. Harrison, Carmine Pariante, Linda Pointon, Carl S. Goodyear, Edward T. Bullmore, Jonathan Cavanagh
Software Mentions: 2
Published: almost 5 years ago

10.1186/1745-6215-12-S1-A84

Self-help therapy and recovery in psychosis: methodological considerations and service user involvement in a partially randomised preference trial
Cited by: 2
Author(s): Samantha Hartley, Gillian Haddock
Software Mentions: 2
Published: over 14 years ago

10.1186/s13063-016-1676-7

StereoTactic radiotherapy for wet Age-Related macular degeneration (STAR): study protocol for a randomised controlled clinical trial
Cited by: 13
Author(s): James E. Neffendorf, R. M. Desai, Yanzhong Wang, Joanna Kelly, Caroline Murphy, Barnaby C Reeves, Usha Chakravarthy, Sarah Wordsworth, Christopher Alan Lewis, Janet L. Peacock, Shahir Uddin, Joe M. O’Sullivan, Timothy L. Jackson
Software Mentions: 2
Published: over 9 years ago

10.1186/s13063-019-3469-2

The HOSENG trial – Effect of the provision of oral self-testing for absent and refusing individuals during a door-to-door HIV-testing campaign on testing coverage: protocol of a cluster-randomized clinical trial in rural Lesotho
Cited by: 6
Author(s): Alain Amstutz, Thabo Ishmael Lejone, Lefu Khesa, Josephine Muhairwe, Bienvenu Lengo Nsakala, Katleho Tlali, Moniek Bresser, Fiona Vanobberghen, Mathebe Kopo, Mpho Kao, Thomas Klimkait, Manuel Battegay, Niklaus Daniel Labhardt, Tracy R. Glass
Software Mentions: 2
Published: almost 7 years ago

10.1016/j.tube.2017.08.004

Host blood RNA signatures predict the outcome of tuberculosis treatment
Cited by: 126
Author(s): Ethan Thompson, Ying Du, Stephanus T. Malherbe, Steven G. Smith, Jackie Braun, Joe Valvo, Katharina Ronacher, Gerard Tromp, David L. Tabb, David Alland, Shubhada Shenai, Laura E. Via, James Warwick, Alan Aderem, Thomas J. Scriba, Jill Winter, Gerhard Walzl, Daniel E. Zak, Nelita du Plessis, André G. Loxton, Novel N. Chegou, Myungsun Lee
Software Mentions: 2
Published: over 8 years ago

10.4274/tjh.galenos.2019.2019.0312

Expression Profile Screening and Bioinformatics Analysis of Circrna, Lncrna and Mrna in Acute Myeloid Leukemia Drug-Resistance Cells
Cited by: 8
Author(s): Meiling Li, Fuxue Meng, Quanyi Lu
Software Mentions: 2
Published: over 6 years ago

10.1101/2021.07.02.450920

Betacoronavirus-specific alternate splicing
Cited by: 1
Author(s): Guy Karlebach, Aronow Bj, Baylin Sj, Daniel Butler, Jonathan Foox, Shawn Levy, Cem Meydan, Christopher Mozsary, Saravia-Butler Am, Taylor Dm, Eve Syrkin Wurtele, Cheryl L. Mason, Afshin Beheshti, Robinson Pn
Software Mentions: 2
Published: about 5 years ago

10.1128/mBio.00207-16

A Two-Component Regulatory System Impacts Extracellular Membrane-Derived Vesicle Production in Group A Streptococcus
Cited by: 118
Author(s): Ulrike Resch, James A. Tsatsaronis, Anaïs Le Rhun, Gerald Stübiger, Manfred Rohde, Sergo Kasvandik, Susanne Holzmeister, Philip Tinnefeld, Sun Nyunt Wai, Emmanuelle Charpentier
Software Mentions: 2
Published: over 9 years ago

10.1128/mBio.00845-17

Ebola Virus Binding to Tim-1 on T Lymphocytes Induces a Cytokine Storm
Cited by: 81
Author(s): Patrick Younan, Mathieu Iampietro, Andrew Nishida, Palaniappan Ramanathan, Rodrigo I. Santos, Mukta Dutta, Ndongala Michel Lubaki, Richard A. Koup, Michael G. Katze, Alexander Bukreyev
Software Mentions: 2
Published: over 8 years ago

10.1128/mBio.00937-19

Endogenous Retrovirus-Derived Long Noncoding RNA Enhances Innate Immune Responses via Derepressing RELA Expression
Cited by: 34
Author(s): Bin Zhou, Fei Qi, Fang–Jing Wu, Hongbo Nie, Yifan Song, Lu Shao, Jingxuan Han, Zhiyong Wu, Hexige Saiyin, Gang Wei, Penghua Wang, Ting Ni, Feng Qian
Software Mentions: 2
Published: almost 7 years ago

10.1128/mBio.00719-20

Sterol-Response Pathways Mediate Alkaline Survival in Diverse Fungi
Cited by: 20
Author(s): Hannah E. Brown, Calla L. Telzrow, Joseph W. Saelens, Larissa Fernandes, J. Andrew Alspaugh
Software Mentions: 2
Published: about 6 years ago

10.1128/mBio.02027-20

Survey of Early-Diverging Lineages of Fungi Reveals Abundant and Diverse Mycoviruses
Cited by: 32
Author(s): Jillian M. Myers, Anne E. Bonds, Rebecca A. Clemons, Natasha Thapa, D. Rabern Simmons, Derreck Carter-House, Jericho Ortañez, P. Liu, Alejandro Miralles-Durán, Alessandro Desirò, Joyce E. Longcore, Gregory Bonito, Jason E. Stajich, J. W. Spatafora, Ying Chang, Luis M. Corrochano, Andrii P. Gryganskyi, Igor V. Grigoriev, Timothy Y. James
Software Mentions: 2
Published: over 5 years ago

10.1128/mBio.02623-20

DDX56 Binds to Chikungunya Virus RNA To Control Infection
Cited by: 12
Author(s): Frances Taschuk, Iulia Tapescu, Ryan H. Moy, Sara Cherry
Software Mentions: 2
Published: over 5 years ago

10.1128/mBio.03044-20

A Noncanonical DNA Damage Checkpoint Response in a Major Fungal Pathogen
Cited by: 10
Author(s): Erika Shor, Rocio Garcia-Rubio, Lucius DeGregorio, David S. Perlin
Software Mentions: 2
Published: over 5 years ago

10.1128/mSphere.00219-19

Robust Transcriptional Response to Heat Shock Impacting Diverse Cellular Processes despite Lack of Heat Shock Factor in Microsporidia
Cited by: 6
Author(s): Nora K. McNamara-Bordewick, Mia McKinstry, Jonathan W. Snow
Software Mentions: 2
Published: about 7 years ago

10.1128/mSphere.00248-19

High-Throughput Sequence Analysis of Peripheral T-Cell Lymphomas Indicates Subtype-Specific Viral Gene Expression Patterns and Immune Cell Microenvironments
Cited by: 12
Author(s): Hani Nakhoul, Zhen Lin, Xia Wang, Claire Roberts, Yan Dong, Erik K. Flemington
Software Mentions: 2
Published: almost 7 years ago

10.1128/mSphere.00545-19

Rapid Bladder Interleukin-10 Synthesis in Response to Uropathogenic Escherichia coli Is Part of a Defense Strategy Triggered by the Major Bacterial Flagellar Filament FliC and Contingent on TLR5
Cited by: 19
Author(s): Dev Raj Acharya, Matthew J. Sullivan, Benjamin L. Duell, Kelvin G. K. Goh, Lahiru Katupitiya, Dean Gosling, Michelle N. Chamoun, Asha Kakkanat, Debasish Chattopadhyay, Michael R. Crowley, David K. Crossman, Mark A. Schembri, Glen C. Ulett
Software Mentions: 2
Published: over 6 years ago

10.1128/mSphere.00105-21

Cellular Management of Zinc in Group B Streptococcus Supports Bacterial Resistance against Metal Intoxication and Promotes Disseminated Infection
Cited by: 16
Author(s): Matthew J. Sullivan, Kelvin G. K. Goh, Glen C. Ulett
Software Mentions: 2
Published: about 5 years ago

10.1128/mSystems.00214-18

Ribosome Profiling Reveals HSP90 Inhibitor Effects on Stage-Specific Protein Synthesis in <i>Leishmania donovani</i>
Cited by: 18
Author(s): Eugenia Bifeld, Stephan Lorenzen, Katharina Bartsch, Juan-José Vasquez, T. Nicolai Siegel, Joachim Clos
Software Mentions: 2
Published: over 7 years ago

10.1128/mSystems.00833-20

Lost and Found: Re-searching and Re-scoring Proteomics Data Aids Genome Annotation and Improves Proteome Coverage
Cited by: 10
Author(s): Patrick J. Willems, Igor Fijałkowski, Petra Van Damme
Software Mentions: 2
Published: over 5 years ago

10.1186/s40246-021-00325-4

The transcriptome profile of human trisomy 21 blood cells
Cited by: 9
Author(s): Francesca Antonaros, Rossella Zenatelli, Giulia Guerri, Matteo Bertelli, Chiara Locatelli, Beatrice Vione, Francesca Catapano, A Gori, Lorenza Vitale, Maria Chiara Pelleri, Giuseppe Ramacieri, Guido Cocchi, Pierluigi Strippoli, Maria Caracausi, Allison Piovesan
Software Mentions: 2
Published: about 5 years ago

10.1186/s40246-021-00347-y

Altered splicing associated with the pathology of inflammatory bowel disease
Cited by: 5
Author(s): Kiera Berger, Hari K. Somineni, Jarod Prince, Subra Kugathasan, Greg Gibson
Software Mentions: 2
Published: almost 5 years ago

10.1093/hmg/ddx412

Loss of offspring Peg3 reduces neonatal ultrasonic vocalizations and increases maternal anxiety in wild-type mothers
Cited by: 20
Author(s): Gráinne McNamara, Hugo Creeth, David J. Harrison, Katherine E. Tansey, Robert Andrews, Anthony R Isles, John Roshan
Software Mentions: 2
Published: over 8 years ago

10.7554/eLife.41661

Stem cells repurpose proliferation to contain a breach in their niche barrier
Cited by: 36
Author(s): Kenneth Lay, Shaopeng Yuan, Shiri Gur-Cohen, Yanying Miao, Tianxiao Han, Shruti Naik, H. Amalia Pasolli, Samantha B. Larsen, Elaine Fuchs
Software Mentions: 2
Published: over 7 years ago

10.7554/eLife.38472

Inhibition of mTORC1 by ER stress impairs neonatal β-cell expansion and predisposes to diabetes in the Akita mouse
Cited by: 37
Author(s): Yael Riahi, Tal Israeli, Roni Yeroslaviz, Shoshana Chimenez, Dana Avrahami, Miri Stolovich-Rain, Ido Alter, Marina Sebag, Nava Polin, Ernesto Bernal-Mizrachi, Yuval Dor, Erol Cerasi, Gil Leibowitz
Software Mentions: 2
Published: over 7 years ago

10.7554/eLife.31989

Efficient termination of nuclear lncRNA transcription promotes mitochondrial genome maintenance
Cited by: 25
Author(s): Dorine Jeanne Mariëtte du Mee, Maxim Ivanov, Joseph Paul Parker, Stephen Buratowski, Sebastian Marquardt
Software Mentions: 2
Published: over 8 years ago

10.7554/eLife.42209

Screening for insulin-independent pathways that modulate glucose homeostasis identifies androgen receptor antagonists
Cited by: 15
Author(s): Sri Teja Mullapudi, Christian S. M. Helker, Giulia L. M. Boezio, Hans-Martin Maischein, Anna M. Sokòl, Stefan Guenther, Hiroki Matsuda, Stefan Kubicek, Johannes Graumann, Yu Hsuan Carol Yang, Didier Y. R. Stainier
Software Mentions: 2
Published: over 7 years ago

10.7554/eLife.66608

KSR1- and ERK-dependent translational regulation of the epithelial-to-mesenchymal transition
Cited by: 10
Author(s): C. Mallikarjuna Rao, Danielle E. Frodyma, Siddesh Southekal, Robert A. Svoboda, Adrian R. Black, Chittibabu Guda, Tomohiro Mizutani, Hans Clevers, Keith R. Johnson, Kurt W. Fisher, Robert E. Lewis
Software Mentions: 2
Published: about 5 years ago

10.7554/eLife.65184

Transcription-associated topoisomerase 2α (TOP2A) activity is a major effector of cytotoxicity induced by G-quadruplex ligands
Cited by: 39
Author(s): Madeleine Bossaert, Angélique Pipier, Jean‐François Riou, Céline Noirot, Linh-Trang Nguyên, Rémy-Félix Serre, Olivier Bouchez, Éric Defrancq, Patrick Calsou, Sébastien Britton, Dennis Gómez
Software Mentions: 2
Published: about 5 years ago

10.7554/eLife.49930

Interferon-β-induced miR-1 alleviates toxic protein accumulation by controlling autophagy
Cited by: 21
Author(s): Camilla Nehammer, Patrick Ejlerskov, Sandeep Gopal, Ava Handley, Ley Moy Ng, Pedro Moreira, Huikyong Lee, Shohreh Issazadeh‐Navikas, David C. Rubinsztein, Roger Pocock
Software Mentions: 2
Published: over 6 years ago

10.7554/eLife.56883

KDM5A mutations identified in autism spectrum disorder using forward genetics
Cited by: 23
Author(s): Lauretta El Hayek, İslam Oğuz Tuncay, Nadine Nijem, Jamie L. Russell, Sara Ludwig, Kiran Kaur, Xiaohong Li, Priscilla Anderton, Miao Tang, Amanda Gerard, Anja Heinze, Pia Zacher, Hessa S. Alsaif, Abolfazl Rad, Kazem Hassanpour, Mohammad Reza Abbaszadegan, Camerun Washington, Barbara R. DuPont, Raymond J. Louie, Causes Study, Madeline Couse, Maha Faden, R. Curtis Rogers, Rami Abou Jamra, Ellen Roy Elias, Reza Maroofian, Henry Houlden, Anna Lehman, Bruce Beutler, Maria H. Chahrour
Software Mentions: 2
Published: over 5 years ago

10.7554/eLife.34423

The transcriptomic and epigenetic map of vascular quiescence in the continuous lung endothelium
Cited by: 39
Author(s): Katharina Schlereth, Dieter Weichenhan, Tobias Bauer, Tina Heumann, Evangelia Giannakouri, Daniel B. Lipka, Samira Jaeger, Matthias Schlesner, Patrick Aloy, Roland Eils, Christoph Plass, Hellmut G. Augustin
Software Mentions: 2
Published: about 8 years ago

10.7554/eLife.26036

Dynamics of genomic innovation in the unicellular ancestry of animals
Cited by: 113
Author(s): Xavier Grau‐Bové, Guifré Torruella, Stuart P. Donachie, Hiroshi Suga, Guy Leonard, Thomas A. Richards, Iñaki Ruiz‐Trillo
Software Mentions: 2
Published: almost 9 years ago

10.7554/eLife.70948

Inducible and reversible inhibition of miRNA-mediated gene repression in vivo
Cited by: 17
Author(s): Gaspare La Rocca, Bryan King, Bing Shui, Xiaohua Li, Minsi Zhang, Kemal M. Akat, Paul Ogrodowski, Chiara Mastroleo, Kevin Chen, Vincenzo Cavalieri, Yilun Ma, Viviana Anelli, Doron Betel, Joana A. Vidigal, Thomas Tuschl, Gunter Meister, Craig B. Thompson, Tullia Lindsten, Kevin M. Haigis, Andrea Ventura
Software Mentions: 2
Published: almost 5 years ago

10.7554/eLife.39821

Spliceosome factors target timeless (tim) mRNA to control clock protein accumulation and circadian behavior in Drosophila
Cited by: 30
Author(s): Iryna Shakhmantsir, Soumyashant Nayak, Gregory R. Grant, Amita Sehgal
Software Mentions: 2
Published: over 7 years ago

10.7554/eLife.10134

Affinity and dose of TCR engagement yield proportional enhancer and gene activity in CD4+ T cells
Cited by: 62
Author(s): Karmel A. Allison, Enikö Sajti, Jana G. Collier, David Gosselin, Ty D. Troutman, Erica L. Stone, Stephen M. Hedrick, Christopher K. Glass
Software Mentions: 2
Published: about 10 years ago

10.7554/eLife.56934

Critical role of WNK1 in MYC-dependent early mouse thymocyte development
Cited by: 6
Author(s): Robert Köchl, Lesley Vanes, Miriam Llorián Sopeña, Probir Chakravarty, Harald Hartweger, Kathryn Fountain, Andrea J. White, Jennifer E. Cowan, Graham Anderson, Victor L. J. Tybulewicz
Software Mentions: 2
Published: over 5 years ago

10.7554/eLife.35618

Striking circadian neuron diversity and cycling of Drosophila alternative splicing
Cited by: 24
Author(s): Qingqing Wang, Katharine C. Abruzzi, Michael Rosbash, Donald C. Rio
Software Mentions: 2
Published: about 8 years ago

10.7554/eLife.58641

Optogenetic investigation of BMP target gene expression diversity
Cited by: 29
Author(s): Katherine W. Rogers, Mohammad ElGamacy, Benjamin M Jordan, Patrick Müller
Software Mentions: 2
Published: over 5 years ago

10.7554/eLife.62765

Phylogenomics of white-eyes, a ‘great speciator’, reveals Indonesian archipelago as the center of lineage diversity
Cited by: 13
Author(s): Chyi Yin Gwee, Kritika M. Garg, Balaji Chattopadhyay, Keren R. Sadanandan, Dewi M. Prawiradilaga, Martin Irestedt, Fumin Lei, Luke M. Bloch, Jessica G.H. Lee, Mohammad Irham, Tri Haryoko, Malcolm C. K. Soh, Kelvin S.‐H. Peh, Karen M. C. Rowe, Teuku Reza Ferasyi, Shaoyuan Wu, Guinevere O. U. Wogan, Rauri C. K. Bowie
Software Mentions: 2
Published: over 5 years ago

10.7554/eLife.54129

A single-parasite transcriptional atlas of Toxoplasma Gondii reveals novel control of antigen expression
Cited by: 43
Author(s): Yuan Xue, Terence C. Theisen, Suchita Rastogi, Abel Ferrel, Stephen R. Quake, John C. Boothroyd
Software Mentions: 2
Published: over 6 years ago

10.7554/eLife.33221

Flatworm-specific transcriptional regulators promote the specification of tegumental progenitors in Schistosoma mansoni
Cited by: 51
Author(s): George R. Wendt, Julie Collins, Jimin Pei, Mark S. Pearson, Hayley M. Bennett, Alex Loukas, Matthew Berriman, Nick V. Grishin, James J. Collins
Software Mentions: 2
Published: over 8 years ago

10.7554/eLife.45009

Seminal fluid compromises visual perception in honeybee queens reducing their survival during additional mating flights
Cited by: 18
Author(s): Joanito Liberti, Julia Görner, Mat Welch, Ryan Dosselli, Morten Schiøtt, Yuri Ogawa, Ian Castleden, Jan M. Hemmi, Barbara Baer-Imhoof, Jacobus J. Boomsma, Boris Baer
Software Mentions: 2
Published: almost 7 years ago

10.7554/eLife.58942

Cell types and neuronal circuitry underlying female aggression in Drosophila
Cited by: 49
Author(s): Catherine E. Schretter, Yoshinori Aso, Alice A. Robie, Marisa Dreher, Michael J. Dolan, Nan Chen, Masayoshi Ito, Tansy Yang, Ruchi Parekh, Kristin Branson, Gerald M. Rubin
Software Mentions: 2
Published: over 5 years ago

10.7554/eLife.32833

Distinct myocardial lineages break atrial symmetry during cardiogenesis in zebrafish
Cited by: 33
Author(s): Almary Guerra, Raoul Freitas Vale Germano, Oliver A. Stone, Rima Arnaout, Stefan Guenther, Suchit Ahuja, Verónica Uribe, Benoît Vanhollebeke, Didier Y. R. Stainier, Sven Reischauer
Software Mentions: 2
Published: about 8 years ago

10.7554/eLife.55523

A single-cell transcriptomic and anatomic atlas of mouse dorsal raphe Pet1 neurons
Cited by: 66
Author(s): Benjamin W. Okaty, Nikita Sturrock, Yasmin Escobedo Lozoya, YoonJeung Chang, Rebecca A. Senft, Krissy A Lyon, Olga V. Alekseyenko, Susan M. Dymecki
Software Mentions: 2
Published: about 6 years ago

10.7554/eLife.28620

Cooperative interactions enable singular olfactory receptor expression in mouse olfactory neurons
Cited by: 83
Author(s): Kevin D. Monahan, Ira Schieren, Jonah Cheung, Alice Mumbey-Wafula, Edwin S. Monuki, Stavros Lomvardas
Software Mentions: 2
Published: almost 9 years ago

10.7554/eLife.54493

Dissecting the phenotypic and functional heterogeneity of mouse inflammatory osteoclasts by the expression of Cx3cr1
Cited by: 37
Author(s): Maria‐Bernadette Madel, Lidia Ibáñez, Thomas Ciucci, James P. Halper, Matthieu Rouleau, Antoine Boutin, Christophe Hue, Isabelle Duroux-Richard, Florence Apparailly, Henri‐Jean Garchon, Abdelilah Wakkach, Claudine Blin-Wakkach
Software Mentions: 2
Published: about 6 years ago

10.7554/eLife.11752

A new view of transcriptome complexity and regulation through the lens of local splicing variations
Cited by: 338
Author(s): Jorge Vaquero-Garcia, Alejandro Barrera, Matthew R. Gazzara, Juan González-Vallinas, Nicholas F. Lahens, John B. Hogenesch, Kristen W. Lynch, Yoseph Barash
Software Mentions: 2
Published: over 10 years ago

10.7554/eLife.25605

Reciprocal analyses in zebrafish and medaka reveal that harnessing the immune response promotes cardiac regeneration
Cited by: 196
Author(s): Shih Lei Lai, Rubén Marín-Juez, Pedro Luís Moura, Carsten Kuenne, Jason Kuan Han Lai, Ayele Taddese Tsedeke, Stefan Guenther, Mario Looso, Didier Y. R. Stainier
Software Mentions: 2
Published: about 9 years ago

10.7554/eLife.63982

Fruitless mutant male mosquitoes gain attraction to human odor
Cited by: 32
Author(s): Nipun S. Basrur, Maria Elena De Obaldia, Takeshi Morita, Margaret Herre, Ricarda K von Heynitz, Yael N. Tsitohay, Leslie B. Vosshall
Software Mentions: 2
Published: over 5 years ago

10.7554/eLife.64806

Anti-ferroptotic mechanism of IL4i1-mediated amino acid metabolism
Cited by: 50
Author(s): Leonie Zeitler, Alessandra Fiore, Claudia Meyer, Marion Russier, Gaia Zanella, Sabine Suppmann, Marco Gargaro, Sachdev S. Sidhu, Somasekar Seshagiri, Caspar Ohnmacht, Thomas Köcher, Francesca Fallarino, Andreas Linkermann, Peter J. Murray
Software Mentions: 2
Published: over 5 years ago

10.7554/eLife.27450

Molecular conservation of marsupial and eutherian placentation and lactation
Cited by: 28
Author(s): Michael W Guernsey, Edward B. Chuong, Guillaume Cornelis, Marilyn B. Renfree, Julie C. Baker
Software Mentions: 2
Published: almost 9 years ago

10.7554/eLife.70557

3′HS1 CTCF binding site in human β-globin locus regulates fetal hemoglobin expression
Cited by: 5
Author(s): Pamela Himadewi, Xue Qing David Wang, Fan Feng, Haley Gore, Yushuai Liu, Li Yu, Ryo Kurita, Yukio Nakamura, Gerd P. Pfeifer, Jie Liu, Xiaotian Zhang
Software Mentions: 2
Published: almost 5 years ago

10.7554/eLife.50561

MicroRNA-934 is a novel primate-specific small non-coding RNA with neurogenic function during early development
Cited by: 11
Author(s): Kanella Prodromidou, Ioannis S. Vlachos, Maria Gaitanou, Georgia Kouroupi, Artemis G. Hatzigeorgiou, Rebecca Matsas
Software Mentions: 2
Published: about 6 years ago

10.7554/eLife.54603

Coverage-dependent bias creates the appearance of binary splicing in single cells
Cited by: 32
Author(s): Carlos Fernando Buen Abad Najar, Nir Yosef, Liana F. Lareau
Software Mentions: 2
Published: about 6 years ago

10.7554/eLife.54659

Osterix-Cre marks distinct subsets of CD45- and CD45+ stromal populations in extra-skeletal tumors with pro-tumorigenic characteristics
Cited by: 9
Author(s): Biancamaria Ricci, Eric Tycksen, Hamza Celik, Jad I. Belle, Francesca Fontana, Roberto Civitelli, Roberta Faccio
Software Mentions: 2
Published: almost 6 years ago

10.7554/eLife.30919

ketu mutant mice uncover an essential meiotic function for the ancient RNA helicase YTHDC2
Cited by: 118
Author(s): Devanshi Jain, M. Rhyan Puno, Cem Meydan, Nathalie Lailler, Christopher E. Mason, Christopher D. Lima, Kathryn V. Anderson, Scott Keeney
Software Mentions: 2
Published: over 8 years ago

10.7554/eLife.30094

Dissection of affinity captured LINE-1 macromolecular complexes
Cited by: 59
Author(s): Martin S. Taylor, Ilya Altukhov, Kelly R. Molloy, Paolo Mita, Hua Jiang, Emily M. Adney, Aleksandra Wudzinska, Sana Badri, Dimitry D Ischenko, George Eng, Kathleen H. Burns, David Fenyö, Brian T. Chait, Dmitry Alexeev, Michael P. Rout, Jef D. Boeke, John LaCava
Software Mentions: 2
Published: over 8 years ago

10.7554/eLife.50960

Comprehensive annotations of human herpesvirus 6A and 6B genomes reveal novel and conserved genomic features
Cited by: 30
Author(s): Yaara Finkel, Dominik Schmiedel, Julie Tai-Schmiedel, Aharon Nachshon, Roni Winkler, Martina Dobešová, Michal Schwartz, Ofer Mandelboim, Noam Stern-Ginossar
Software Mentions: 2
Published: over 6 years ago

10.7554/eLife.36865

Pdgfra marks a cellular lineage with distinct contributions to myofibroblasts in lung maturation and injury response
Cited by: 119
Author(s): Rongbo Li, Ksenija Bernau, Nathan Sandbo, Jing Gu, Sebastian Preißl, Xin Sun
Software Mentions: 2
Published: almost 8 years ago

10.7554/eLife.63972

HP1α is a chromatin crosslinker that controls nuclear and mitotic chromosome mechanics
Cited by: 57
Author(s): Amy R. Strom, Ronald Biggs, Edward J. Banigan, Xiaotao Wang, Katherine Chiu, Cameron Herman, Jimena Collado, Feng Yue, Joan C. Ritland Politz, Leah J. Tait, David Scalzo, Agnes Telling, Mark Groudine, Clifford P. Brangwynne, John F. Marko, Andrew D. Stephens
Software Mentions: 2
Published: about 5 years ago

10.7554/eLife.58172

Irisin directly stimulates osteoclastogenesis and bone resorption in vitro and in vivo
Cited by: 61
Author(s): Eben G. Estell, Phuong Le, Yosta Vegting, Hyeonwoo Kim, Christiane D. Wrann, Mary L. Bouxsein, Kenichi Nagano, Roland Baron, Bruce M. Spiegelman, Clifford J. Rosen
Software Mentions: 2
Published: almost 6 years ago

10.7554/eLife.54501

Semiochemical responsive olfactory sensory neurons are sexually dimorphic and plastic
Cited by: 18
Author(s): Aashutosh Vihani, Xiaoyang Serene Hu, Sivaji Gundala, Sachiko Koyama, Eric Block, Hiroaki Matsunami
Software Mentions: 2
Published: over 5 years ago

10.7554/eLife.29605

A comparative transcriptomic analysis of replicating and dormant liver stages of the relapsing malaria parasite Plasmodium cynomolgi
Cited by: 55
Author(s): Annemarie Voorberg-van der Wel, Guglielmo Roma, Devendra Gupta, Sven Schuierer, Florian Nigsch, Walter Carbone, Anne‐Marie Zeeman, Boon Heng Lee, Sam Hofman, Bart W. Faber, Judith Knehr, Erica M. Pasini, Bernd Kinzel, Pablo Bifani, Ghislain M. C. Bonamy, Tewis Bouwmeester, Clemens H. M. Kocken, Thierry T. Diagana
Software Mentions: 2
Published: over 8 years ago

10.7554/eLife.62387

Runx2-Twist1 interaction coordinates cranial neural crest guidance of soft palate myogenesis
Cited by: 21
Author(s): Xia Han, Jifan Feng, Tingwei Guo, Yong-Hwee Eddie Loh, Yuan Yuan, Thach-Vu Ho, Courtney Kyeong Cho, Jingyuan Li, Junjun Jing, Eva Janečková, Jinzhi He, Fei Pei, Jing Bi, Brian J. Song, Yang Chai
Software Mentions: 2
Published: over 5 years ago

10.3390/ijms18040805

Radiogenomic Analysis of Oncological Data: A Technical Survey
Cited by: 97
Author(s): Mariarosaria Incoronato, Marco Aiello, Teresa Infante, Carlo Cavaliere, Anna Grimaldi, Peppino Mirabelli, Serena Monti, Marco Salvatore
Software Mentions: 2
Published: about 9 years ago

10.3390/ijms18061110

Validation of Splicing Events in Transcriptome Sequencing Data
Cited by: 6
Author(s): Wolfgang Kaisers, Johannes Ptok, Holger Schwender, Heiner Schaal
Software Mentions: 2
Published: about 9 years ago

10.3390/ijms19051485

PIMT/NCOA6IP Deletion in the Mouse Heart Causes Delayed Cardiomyopathy Attributable to Perturbation in Energy Metabolism
Cited by: 8
Author(s): Yuzhi Jia, Ning Liu, Navin Viswakarma, Ruya Sun, Mathew J. Schipma, Shu Meng, Edward B. Thorp, Yashpal S. Kanwar, Bayar Thimmapaya, Janardan K. Reddy
Software Mentions: 2
Published: about 8 years ago

10.3390/ijms19071894

Preliminary RNA-Seq Analysis of Long Non-Coding RNAs Expressed in Human Term Placenta
Cited by: 22
Author(s): Marta Majewska, Aleksandra Lipka, Łukasz Paukszto, J Jastrzebski, Marek Gowkielewicz, Marcin Jóźwik, Mariusz Majewski
Software Mentions: 2
Published: about 8 years ago

10.3390/ijms19071822

Decryption of Active Constituents and Action Mechanism of the Traditional Uighur Prescription (BXXTR) Alleviating IMQ-Induced Psoriasis-Like Skin Inflammation in BALB/c Mice
Cited by: 17
Author(s): Xiaoyang Pang, Ke Zhang, Jian Huang, Hangyu Wang, Le Gao, Tao Wang, Yingnan Sun, Long Chen, Jinhui Wang
Software Mentions: 2
Published: about 8 years ago