cran: STAR | Projects | Ecosyste.ms: Papers

10.1038/s41598-019-42019-x

Inheritance patterns of the transcriptome in hybrid chickens and their parents revealed by expression analysis
Cited by: 9
Author(s): Hongchang Gu, Xin Qi, Yaxiong Jia, Zebin Zhang, Changsheng Nie, Xinghua Li, Junying Li, Zhihua Jiang, Qiong Wang, Lujiang Qu
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-019-42568-1

A molecular biomarker for prediction of clinical outcome in children with ASD, constipation, and intestinal inflammation
Cited by: 10
Author(s): Stephen J. Walker, Carl D. Langefeld, Kip D. Zimmerman, Marshall Z. Schwartz, Arthur Krigsman
Software Mentions: 2
Published: about 7 years ago

10.1093/dnares/dsz009

Analysis of an improved Cyanophora paradoxa genome assembly
Cited by: 32
Author(s): Dana C. Price, Ursula Goodenough, Robyn Roth, Jae‐Hyeok Lee, Thamali Kariyawasam, Marek Mutwil, Camilla Ferrari, Fabio Facchinelli, Steven Ball, Ugo Cenci, Cheong Xin Chan, Nicole Wagner, Hwan Su Yoon, Andreas Weber, Debashish Bhattacharya
Software Mentions: 2
Published: about 7 years ago

10.1007/s10142-017-0555-y

Transcriptome profile of the human placenta
Cited by: 27
Author(s): Marta Majewska, Aleksandra Lipka, Łukasz Paukszto, J Jastrzebski, Kamil Myszczyński, Marek Gowkielewicz, Marcin Jóźwik, Mariusz Majewski
Software Mentions: 2
Published: over 9 years ago

10.1172/jci.insight.139163

ROS-producing immature neutrophils in giant cell arteritis are linked to vascular pathologies
Cited by: 42
Author(s): Lihui Wang, Zhichao Ai, Tariq E. Khoyratty, Kristina Zec, Hayley L. Eames, Erinke van Grinsven, Alison Hudak, Susan Morris, David Ahern, Claudia Monaco, Evgeniy Eruslanov, Raashid Luqmani, Irina A. Udalova
Software Mentions: 2
Published: over 5 years ago

10.1016/j.celrep.2019.09.029

Impairment of Macroautophagy in Dopamine Neurons Has Opposing Effects on Parkinsonian Pathology and Behavior
Cited by: 28
Author(s): Benjamin H.M. Hunn, Siv Vingill, Sarah Threlfell, Javier Alegre-Abarrategui, Morgane Magdelyns, Thierry Deltheil, Nora Bengoa-Vergniory, Peter L. Oliver, Milena Cioroch, Natalie M. Doig, David M. Bannerman, Stephanie J. Cragg, Richard Wade‐Martins
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41598-019-42578-z

Single cell RNA-sequencing identified Dec2 as a suppressive factor for spermatogonial differentiation by inhibiting Sohlh1 expression
Cited by: 6
Author(s): Yoshinori Makino, Niels H. Jensen, Naoko Yokota, Moritz J. Rossner, Haruhiko Akiyama, Katsuhiko Shirahige, Yuki Okada
Software Mentions: 2
Published: about 7 years ago

10.21769/BioProtoc.3539

mRNA Extraction from Gill Tissue for RNA-sequencing
Cited by: 0
Author(s): Jukka‐Pekka Verta, Felicity C. Jones
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-019-42731-8

Abiotic and biotic stresses induce a core transcriptome response in rice
Cited by: 112
Author(s): Stephen P. Cohen, Jan E. Leach
Software Mentions: 2
Published: about 7 years ago

10.1038/s41598-019-43269-5

Identification and functional prediction of cold-related long non-coding RNA (lncRNA) in grapevine
Cited by: 40
Author(s): Pengfei Wang, Lingmin Dai, Jun Ai, Yongmei Wang, Fengshan Ren
Software Mentions: 2
Published: about 7 years ago

10.1038/s41419-018-0869-2

LncRNA MIR100HG promotes cell proliferation in triple-negative breast cancer through triplex formation with p27 loci
Cited by: 105
Author(s): Shaowei Wang, Ke Hao, Honglei Zhang, Yujie Ma, Lei Ao, Li Zou, Qin Yang, Huiping Zhu, Jianyun Nie, Chen Wu, Baowei Jiao
Software Mentions: 2
Published: almost 8 years ago

10.1172/jci.insight.136093

MyD88/CD40 signaling retains CAR T cells in a less differentiated state
Cited by: 33
Author(s): Brooke L. Prinzing, Patrick Schreiner, Matthew Bell, Yiping Fan, Giedre Krenciute, Stephen Gottschalk
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-019-43426-w

Human gut derived-organoids provide model to study gluten response and effects of microbiota-derived molecules in celiac disease
Cited by: 67
Author(s): Rachel Freire, Laura Ingano, Gloria Serena, Murat Çetinbaş, Anthony Anselmo, Anna Sapone, Ruslan I. Sadreyev, Alessio Fasano, Stefania Senger
Software Mentions: 2
Published: about 7 years ago

10.1186/s12974-017-0915-5

MHC class II expression and potential antigen-presenting cells in the retina during experimental autoimmune uveitis
Cited by: 42
Author(s): Deborah A. Lipski, Rémi Dewispelaere, Vincent Foucart, Laure Caspers, Matthieu Defrance, Catherine Bruyns, François Willermain
Software Mentions: 2
Published: almost 9 years ago

10.3390/ijms22189842

Organelle Genomes and Transcriptomes of Nymphaea Reveal the Interplay between Intron Splicing and RNA Editing
Cited by: 6
Author(s): Zheng-Shan He, Andan Zhu, Jun‐Bo Yang, Weishu Fan, Li D
Software Mentions: 2
Published: almost 5 years ago

10.3390/ijms22168634

Epidermal PPARγ Is a Key Homeostatic Regulator of Cutaneous Inflammation and Barrier Function in Mouse Skin
Cited by: 2
Author(s): Raymond L. Konger, Ethel Derr‐Yellin, Teresa A. Zimmers, Terrence M. Katona, Xiaoling Xuei, Yunlong Liu, Hongming Zhou, Edward Simpson, Matthew J. Turner
Software Mentions: 2
Published: almost 5 years ago

10.1371/journal.pone.0054848

A Phylogeny of Birds Based on Over 1,500 Loci Collected by Target Enrichment and High-Throughput Sequencing
Cited by: 290
Author(s): John E. McCormack, Michael Harvey, Brant C. Faircloth, Nicholas G. Crawford, Travis C. Glenn, Robb T. Brumfield
Software Mentions: 2
Published: over 13 years ago

10.1093/g3journal/jkab218

The amino acid substitution affects cellular response to mistranslation
Cited by: 8
Author(s): Matthew D. Berg, Yi Zhu, Bianca Y. Ruiz, Raphaël Loll-Krippleber, Joshua Isaacson, Bryan-Joseph San Luis, Julie Genereaux, Charles Boone, Judit Villén, Grant W. Brown, Christopher J. Brandl
Software Mentions: 2
Published: about 5 years ago

10.1172/jci.insight.144955

Modulation of ATXN1 S776 phosphorylation reveals the importance of allele-specific targeting in SCA1
Cited by: 9
Author(s): Larissa Nitschke, Stephanie L. Coffin, Eder Xhako, Dany B. El-Najjar, James P. Orengo, Elizabeth Alcala, Yun Dai, Ying Wan, Zhandong Liu, Harry T. Orr, Huda Y. Zoghbi
Software Mentions: 2
Published: over 5 years ago

10.3390/ijms21165605

Murine Long Noncoding RNA Morrbid Contributes in the Regulation of NRAS Splicing in Hepatocytes In Vitro
Cited by: 6
Author(s): Anna S. Fefilova, Pavel Melnikov, Tatiana Prikazchikova, Tatiana O. Abakumova, Ilya I. Kurochkin, Pavel Mazin, Rustam H. Ziganshin, Olga V. Sergeeva, Timofei S. Zatsepin
Software Mentions: 2
Published: almost 6 years ago

10.3390/genes12010067

Multi-Omics Approach Reveals miR-SNPs Affecting Muscle Fatty Acids Profile in Nelore Cattle
Cited by: 10
Author(s): Tainã Figueiredo Cardoso, Luiz Lehmann Coutinho, Jennifer Jessica Bruscadin, Wellison J. S. Diniz, Juliana Petrini, Bruno de Bezerril Andrade, P. S. N. Oliveira, Mirele Daiana Poleti, Juliano Coelho da Silveira, Marcos Roberto Chiaratti, Adhemar Zerlotini Neto, Gerson Barreto Mourão, L. C. de A. Regitano
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pbio.3000245

Simple nutrients bypass the requirement for HLH-30 in coupling lysosomal nutrient sensing to survival
Cited by: 15
Author(s): John T. Murphy, Haiyan Liu, Xiucui Ma, Alexander Shaver, Brian M. Egan, Clara Oh, Alexander Boyko, Travis Mazer, Samuel Ang, Rohan Khopkar, Ali Javaheri, Sandeep Kumar, Xuntian Jiang, Daniel S. Ory, Kartik Mani, Scot J. Matkovich, Kerry Kornfeld, Abhinav Diwan
Software Mentions: 2
Published: about 7 years ago

10.3390/ijms21165633

The Chloroplast RNA Binding Protein CP31A Has a Preference for mRNAs Encoding the Subunits of the Chloroplast NAD(P)H Dehydrogenase Complex and Is Required for Their Accumulation
Cited by: 5
Author(s): Benjamin Lenzen, Thilo Rühle, Marie-Kristin Lehniger, Ayako Okuzaki, Mathias Labs, Jose M. Muiño, Uwe Ohler, Dario Leister, Christian Schmitz‐Linneweber
Software Mentions: 2
Published: almost 6 years ago

10.3390/ijms221810112

Tissue-Specific Metabolic Reprogramming during Wound-Induced Organ Formation in Tomato Hypocotyl Explants
Cited by: 6
Author(s): Eduardo Larriba, Ana Belén Sánchez-García, Cristina Martínez‐Andújar, Alfonso Albacete, José Manuel Pérez-Pérez
Software Mentions: 2
Published: almost 5 years ago

10.3390/ijms21165831

BrassicaEDB: A Gene Expression Database for Brassica Crops
Cited by: 37
Author(s): Haoyu Chao, Li Tian, Chaoyu Luo, Hualei Huang, Yingfei Ruan, Xiaodong Li, Yue Niu, Yonghai Fan, Wei Sun, Kai Zhang, Jiana Li, Cunmin Qu, Kun Lü
Software Mentions: 2
Published: almost 6 years ago

10.1172/jci.insight.138312

Short-term Western-style diet negatively impacts reproductive outcomes in primates
Cited by: 9
Author(s): Sweta Ravisankar, Alison Y. Ting, Mark K. Murphy, Nash Redmayne, Dorothy Wang, Carrie McArthur, Diana Takahashi, Paul Kievit, Shawn L. Chavez, Jon D. Hennebold
Software Mentions: 2
Published: over 5 years ago

10.3390/ijms21176424

Antibiotic Treatment Prior to Injury Improves Post-Traumatic Osteoarthritis Outcomes in Mice
Cited by: 16
Author(s): Melanie E. Mendez, Deepa K. Murugesh, Aimy Sebastian, Nicholas R. Hum, Summer A. McCloy, Edward A. Kuhn, Blaine A. Christiansen, Gabriela G. Loots
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41598-019-45973-8

Chronic disturbance in the thalamus following cranial irradiation to the developing mouse brain
Cited by: 1
Author(s): Martina Boström, Yohanna Eriksson, Jolie Danial, Thomas Björk‐Eriksson, Marie Kalm
Software Mentions: 2
Published: about 7 years ago

10.1172/jci.insight.143465

Reversible cardiac disease features in an inducible CUG repeat RNA–expressing mouse model of myotonic dystrophy
Cited by: 10
Author(s): Ashish N. Rao, Hannah M. Campbell, Xiangnan Guan, Tarah A. Word, Xander H.T. Wehrens, Zheng Xia, Thomas A. Cooper
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-019-46656-0

REV-ERBα and REV-ERBβ function as key factors regulating Mammalian Circadian Output
Cited by: 57
Author(s): Ryosuke Ikeda, Yoshiki Tsuchiya, Nobuya Koike, Yasuhiro Umemura, Hitoshi Inokawa, Ryutaro Ono, Maho Inoue, Yuh Sasawaki, Tess Grieten, Naoki Okubo, Kazuya Ikoma, Hiroyoshi Fujiwara, Toshikazu Kubo, Kazuhiro Yagita
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41598-019-46462-8

HLA class II-Restricted CD8+ T cells in HIV-1 Virus Controllers
Cited by: 5
Author(s): Tinashe Nyanhete, Alyse Frisbee, Todd Bradley, William J. Faison, Elizabeth Robins, Tamika L. Payne, Stephanie A. Freel, Sheetal Sawant, Kent J. Weinhold, Kevin Wiehe, Barton F. Haynes, Guido Ferrari, Qi-Jing Li, M. Anthony Moody, Georgia D. Tomaras
Software Mentions: 2
Published: almost 7 years ago

10.1371/journal.pbio.3001385

The induction of preterm labor in rhesus macaques is determined by the strength of immune response to intrauterine infection
Cited by: 11
Author(s): Monica Cappelletti, Pietro Presicce, Feiyang Ma, Paranthaman Senthamaraikannan, Lisa Miller, Matteo Pellegrini, Myung Shin Sim, Alan H. Jobe, Senad Divanovic, Sing Sing Way, Claire Chougnet, Suhas G. Kallapur
Software Mentions: 2
Published: almost 5 years ago

10.1172/jci.insight.145857

Leukocyte dynamics after intracerebral hemorrhage in a living patient reveal rapid adaptations to tissue milieu
Cited by: 9
Author(s): Brittany A. Goods, Michael H. Askenase, Erica Markarian, Hannah E. Beatty, Riley S. Drake, Ira Fleming, Jonathan H. DeLong, Naomi H. Philip, Charles Matouk, Issam A. Awad, Mario Zuccarello, Daniel F. Hanley, J. Christopher Love, Alex K. Shalek, Lauren H Sansing
Software Mentions: 2
Published: over 5 years ago

10.1038/s41419-020-2371-x

PRDM3 attenuates pancreatitis and pancreatic tumorigenesis by regulating inflammatory response
Cited by: 10
Author(s): Jie Ye, Anpei Huang, Haitao Wang, Anni Zhang, Xiaojun Huang, Qingping Lan, Tomohiko Sato, Susumu Goyama, Mineo Kurokawa, Chu‐Xia Deng, Maike Sander, David F. Schaeffer, Wen Li, Janel L. Kopp, Ruiyu Xie
Software Mentions: 2
Published: over 6 years ago

10.7554/eLife.33221

Flatworm-specific transcriptional regulators promote the specification of tegumental progenitors in Schistosoma mansoni
Cited by: 51
Author(s): George R. Wendt, Julie Collins, Jimin Pei, Mark S. Pearson, Hayley M. Bennett, Alex Loukas, Matthew Berriman, Nick V. Grishin, James J. Collins
Software Mentions: 2
Published: over 8 years ago

10.3390/genes12020189

Long-Term Waterlogging as Factor Contributing to Hypoxia Stress Tolerance Enhancement in Cucumber: Comparative Transcriptome Analysis of Waterlogging Sensitive and Tolerant Accessions
Cited by: 23
Author(s): Kinga Kęska, Michał Wojciech Szcześniak, Izabela Makałowska, Małgorzata Czernicka
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0220101

Enhanced efficacy of sitravatinib in metastatic models of antiangiogenic therapy resistance
Cited by: 20
Author(s): Melissa Dolan, Michalis Mastri, Amanda Tracz, James G. Christensen, Gurkamal S. Chatta, John M.L. Ebos
Software Mentions: 2
Published: almost 7 years ago

10.1016/j.jcmgh.2021.06.002

Acute Experimental Barrier Injury Triggers Ulcerative Colitis–Specific Innate Hyperresponsiveness and Ulcerative Colitis–Type Microbiome Changes in Humans
Cited by: 7
Author(s): Jakob Benedict Seidelin, Martin Iain Bahl, Tine Rask Licht, Benjamin E. Mead, Jeffrey M. Karp, Jens Vilstrup Johansen, Lene Riis, Marina Ramírez Galera, Anders Woetmann, Jacob Tveiten Bjerrum
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pbio.3000087

Inhibition of Notch signaling rescues cardiovascular development in Kabuki Syndrome
Cited by: 19
Author(s): María de los Ángeles Serrano, Bradley L. Demarest, Tarlynn Tone-Pah-Hote, Martin Tristani‐Firouzi, H. Joseph Yost
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41598-019-47659-7

Colorectal cancer cells respond differentially to autophagy inhibition in vivo
Cited by: 42
Author(s): Annie Lauzier, Josiann Normandeau-Guimond, Vanessa Vaillancourt-Lavigueur, Vincent Boivin, Martine Charbonneau, Nathalie Rivard, Michelle S. Scott, Claire M. Dubois, Steve Jean
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41598-019-46916-z

Constraints to counting bioluminescence producing cells by a commonly used transgene promoter and its implications for experimental design
Cited by: 5
Author(s): Eman Mosaad, Kathryn Futrega, Inge Seim, Brian Gloss, Karen Chambers, Judith A. Clements, Michael Doran
Software Mentions: 2
Published: almost 7 years ago

10.1186/s12887-021-02754-5

Utilizing single-cell RNA sequencing for analyzing the characteristics of PBMC in patients with Kawasaki disease
Cited by: 10
Author(s): Fei Xue, Yuhan Zhou, Xin Guo, Minhui Xu
Software Mentions: 2
Published: about 5 years ago

10.1186/s12886-020-1333-5

Retinal endothelial cell phenotypic modifications during experimental autoimmune uveitis: a transcriptomic approach
Cited by: 12
Author(s): Deborah A. Lipski, Vincent Foucart, Rémi Dewispelaere, Laure Caspers, Matthieu Defrance, Catherine Bruyns, François Willermain
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0176675

Optimized approach for Ion Proton RNA sequencing reveals details of RNA splicing and editing features of the transcriptome
Cited by: 13
Author(s): Roger B. Brown, Nathaniel J. Madrid, Hideaki Suzuki, Scott A. Ness
Software Mentions: 2
Published: about 9 years ago

10.1186/s11658-021-00255-y

Triazoloacridone C-1305 impairs XBP1 splicing by acting as a potential IRE1α endoribonuclease inhibitor
Cited by: 8
Author(s): Sylwia Bartoszewska, Jarosław Króliczewski, David K. Crossman, Aneta Pogorzelska, Maciej Bagiński, James F. Collawn, Rafał Bartoszewski
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pbio.2005903

Lso2 is a conserved ribosome-bound protein required for translational recovery in yeast
Cited by: 27
Author(s): Yinuo J. Wang, Pavanapuresan P. Vaidyanathan, María F. Rojas-Durán, Namrata D. Udeshi, Kristen M. Bartoli, Steven A. Carr, Wendy V. Gilbert
Software Mentions: 2
Published: almost 8 years ago

10.1186/s12868-019-0514-8

Impact of inflammation on brain subcellular energetics in anesthetized rats
Cited by: 9
Author(s): Robert H. Thiele, Hari Prasad Osuru, Umadevi Paila, Keita Ikeda, Zhiyi Zuo
Software Mentions: 2
Published: almost 7 years ago

10.1172/jci.insight.138734

HPV transcript expression affects cervical cancer response to chemoradiation
Cited by: 10
Author(s): Fiona Ruiz, Matthew Inkman, Ramachandran Rashmi, Naoshad Muhammad, Nishanth Gabriel, Christopher A. Miller, Michael D. McLellan, Michael A. Goldstein, Stephanie Markovina, Perry W. Grigsby, Jin Zhang, Julie K. Schwarz
Software Mentions: 2
Published: almost 5 years ago

10.1038/s41598-019-49551-w

A multi-omics analysis of the grapevine pathogen Lasiodiplodia theobromae reveals that temperature affects the expression of virulence- and pathogenicity-related genes
Cited by: 44
Author(s): Carina Félix, Rodrigo Meneses, Micael F. M. Gonçalves, Laurentijn Tilleman, Ana Sofia Duarte, Jesús V. Jorrín Novo, Yves Van de Peer, Dieter Deforce, Filip Van Nieuwerburgh, Ana Cristina Esteves, Artur Alves
Software Mentions: 2
Published: almost 7 years ago

10.1186/1753-6561-3-S4-S14

Using microarrays to identify positional candidate genes for QTL: the case study of ACTH response in pigs
Cited by: 11
Author(s): Vincent Jouffe, Suzanne Rowe, Laurence Liaubet, Bart Buitenhuis, Henrik Hornshøj, Magali SanCristobal, Pierre Mormède, Dirk-Jan de Koning
Software Mentions: 2
Published: almost 17 years ago

10.3390/ijms21186584

Transcriptome of the Aedes aegypti Mosquito in Response to Human Complement Proteins
Cited by: 4
Author(s): Gloria I. Giraldo-Calderón, Arley Calle-Tobón, Paula Rozo-López, Tonya M. Colpitts, Yoonseong Park, Guillermo Rúa‐Uribe, Berlin Londoño-Rentería
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pbio.3000324

DPPA2/4 and SUMO E3 ligase PIAS4 opposingly regulate zygotic transcriptional program
Cited by: 71
Author(s): Yao-Long Yan, Chao Zhang, Jun Hao, Xuelian Wang, Ming Jia, Mi Li, Jie Na, Xinli Hu, Yangming Wang
Software Mentions: 2
Published: about 7 years ago

10.1371/journal.pbio.3000498

Dissecting the dynamics of signaling events in the BMP, WNT, and NODAL cascade during self-organized fate patterning in human gastruloids
Cited by: 116
Author(s): Sapna Chhabra, Lizhong Liu, Ryan Goh, Xiangyu Kong, Aryeh Warmflash
Software Mentions: 2
Published: over 6 years ago

10.3390/genes12020320

Differential Expression of BARD1 Isoforms in Melanoma
Cited by: 2
Author(s): Lorissa I. McDougall, Ryan M. Powell, Magdalena Ratajska, Chiemi F. Lynch-Sutherland, Sultana Mehbuba Hossain, George A. R. Wiggins, Agnieszka Harazin-Lechowska, Bożena Cybulska-Stopa, Jyoti Motwani, Erin C. Macaulay, Glen Reid, Logan C. Walker, Janusz Ryś, Michael R. Eccles
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-021-88703-9

Combined VEGFR and MAPK pathway inhibition in angiosarcoma
Cited by: 13
Author(s): Michael J. Wagner, Yasmin Lyons, Jean H. Siedel, Robert Dood, Archana S. Nagaraja, Monika Haemmerle, Lingegowda S. Mangala, Pritha Chanana, Alexander J. Lazar, Wei Lien Wang, Vinod Ravi, Eric C. Holland, Anil K. Sood
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-021-89252-x

Effect of plane of nutrition in early life on the transcriptome of visceral adipose tissue in Angus heifer calves
Cited by: 8
Author(s): Kate Keogh, A. K. Kelly, David A. Kenny
Software Mentions: 2
Published: about 5 years ago

10.3390/genes12030341

Comparative Transcriptome Analysis Reveals Key Genes and Pathways Involved in Prickle Development in Eggplant
Cited by: 12
Author(s): Lei Zhang, Haoyun Sun, Tao Xu, Tianye Shi, Zongyun Li, Wenqian Hou
Software Mentions: 2
Published: over 5 years ago

10.1172/jci.insight.149381

GADD45A is a protective modifier of neurogenic skeletal muscle atrophy
Cited by: 11
Author(s): Jeffrey T. Ehmsen, Riki Kawaguchi, Damlanur Kaval, Anna E. Johnson, Daniel Nachun, Giovanni Coppola, Ahmet Höke
Software Mentions: 2
Published: about 5 years ago

10.3390/ijms21197386

Genome-Wide Development and Validation of Cost-Effective KASP Marker Assays for Genetic Dissection of Heat Stress Tolerance in Maize
Cited by: 16
Author(s): A. B. Jagtap, Yogesh Vikal, Gurmukh S. Johal
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41598-021-89052-3

Figla promotes secondary follicle growth in mature mice
Cited by: 5
Author(s): Asuka Okunomiya, Akihito Horie, Hirohiko Tani, Yukiyasu Sato, Shiro Takamatsu, J.B. Brown, Miki Sugimoto, Junzo Hamanishi, Eiji Kondoh, Noriomi Matsumura, Masaki Mandai
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-021-89630-5

Identification and Classification of Rare Variants in NPC1 and NPC2 in Quebec
Cited by: 2
Author(s): Lahoud Touma, Marjorie Labrecque, Martine Tétreault, Antoine Duquette
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-021-89921-x

Dual RNA-seq analysis of in vitro infection multiplicity and RNA depletion methods in Chlamydia-infected epithelial cells
Cited by: 5
Author(s): Regan J. Hayward, Michael S. Humphrys, Wilhelmina M. Huston, Garry S. A. Myers
Software Mentions: 2
Published: about 5 years ago

10.1038/s41419-021-03558-2

N6-methyladenosine modification of circCUX1 confers radioresistance of hypopharyngeal squamous cell carcinoma through caspase1 pathway
Cited by: 61
Author(s): Ping Wu, Xing Fang, Yalan Liu, Yurong Tang, Wei Wang, Xin Li, Yuhua Fan
Software Mentions: 2
Published: over 5 years ago

10.3390/genes12030423

Transcript Variants of Genes Involved in Neurodegeneration Are Differentially Regulated by the APOE and MAPT Haplotypes
Cited by: 6
Author(s): Sulev Kõks, Abigail L Pfaff, Vivien J. Bubb, John P. Quinn
Software Mentions: 2
Published: over 5 years ago

10.1172/jci.insight.151005

NR4A family members regulate T cell tolerance to preserve immune homeostasis and suppress autoimmunity
Cited by: 13
Author(s): Ryosuke Hiwa, Hailyn V. Nielsen, James L. Mueller, Ravi Mandla, Julie Zikherman
Software Mentions: 2
Published: almost 5 years ago

10.1371/journal.pbio.1002379

Phylogenomics Reveals Three Sources of Adaptive Variation during a Rapid Radiation
Cited by: 335
Author(s): James B. Pease, David C. Haak, Matthew W. Hahn, Leonie C. Moyle
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pbio.3000582

Back-spliced RNA from retrotransposon binds to centromere and regulates centromeric chromatin loops in maize
Cited by: 57
Author(s): Yalin Liu, Handong Su, Jing Zhang, Yang Liu, Chao Feng, Fangpu Han
Software Mentions: 2
Published: over 6 years ago

10.1172/jci.insight.149149

Endothelium-protective, histone-neutralizing properties of the polyanionic agent defibrotide
Cited by: 20
Author(s): Hui Shi, Alex A. Gandhi, Stephanie A. Smith, Qiuyu Wang, Diane Chiang, Srilakshmi Yalavarthi, Ramadan A. Ali, Chao Liu, Gautam Sule, Pei‐Suen Tsou, Yu Zuo, Yogendra Kanthi, Evan A. Farkash, Jiandie D. Lin, James H. Morrissey, Jason S. Knight
Software Mentions: 2
Published: almost 5 years ago

10.1038/s41419-020-03231-0

ASH2L drives proliferation and sensitivity to bleomycin and other genotoxins in Hodgkin’s lymphoma and testicular cancer cells
Cited by: 7
Author(s): Daniel Constantin, Christian Widmann
Software Mentions: 2
Published: over 5 years ago

10.1186/s12864-020-07136-2

Identification of diverse cell populations in skeletal muscles and biomarkers for intramuscular fat of chicken by single-cell RNA sequencing
Cited by: 18
Author(s): Jinghui Li, Siyuan Xing, Guiping Zhao, Maiqing Zheng, Xinting Yang, Jiahong Sun, Jie Wen, Ranran Liu
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-021-90174-x

In vitro responses to platelet-rich-plasma are associated with variable clinical outcomes in patients with knee osteoarthritis
Cited by: 8
Author(s): Habib Zahir, Bijan Dehghani, Xianglin Yuan, Yurii Chinenov, Christine Kim, Alissa J. Burge, Reyna Bandhari, Daniel Nemirov, Patrick Fava, Peter J. Moley, Hollis G. Potter, Joseph Nguyen, Brian Halpern, Laura T. Donlin, Lionel B. Ivashkiv, Scott A. Rodeo, Miguel Otero
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pbio.1002435

How Many Parameters Does It Take to Describe Disease Tolerance?
Cited by: 72
Author(s): Alan K. Louie, Kyung Han Song, Alejandra Guzmán Hotson, Ann T. Tate, David Schneider
Software Mentions: 2
Published: about 10 years ago

10.7554/eLife.45009

Seminal fluid compromises visual perception in honeybee queens reducing their survival during additional mating flights
Cited by: 18
Author(s): Joanito Liberti, Julia Görner, Mat Welch, Ryan Dosselli, Morten Schiøtt, Yuri Ogawa, Ian Castleden, Jan M. Hemmi, Barbara Baer-Imhoof, Jacobus J. Boomsma, Boris Baer
Software Mentions: 2
Published: almost 7 years ago

10.3390/ijms21217814

Investigation of the Impact from IL-2, IL-7, and IL-15 on the Growth and Signaling of Activated CD4+ T Cells
Cited by: 23
Author(s): Canaan Coppola, Brooks Hopkins, Steven Huhn, Zhimei Du, Zuyi Huang, William J. Kelly
Software Mentions: 2
Published: over 5 years ago

10.1038/s41419-018-1296-0

Transcriptome profiling of caspase-2 deficient EμMyc and Th-MYCN mouse tumors identifies distinct putative roles for caspase-2 in neuronal differentiation and immune signaling
Cited by: 4
Author(s): Loretta Dorstyn, Emily Hackett-Jones, Andrej Nikolic, Murray D. Norris, Yoon Pin Lim, John Toubia, Michelle Haber, Sharad Kumar
Software Mentions: 2
Published: over 7 years ago

10.1186/1756-0500-4-121

mmView: a web-based viewer of the mmCIF format
Cited by: 0
Author(s): Petr Čech, Daniel Svozil
Software Mentions: 2
Published: about 15 years ago

10.1186/s12860-020-00296-9

Differential contribution of p300 and CBP to regulatory element acetylation in mESCs
Cited by: 37
Author(s): Sara Matarazzo, Jennifer P. Nguyen, Aishwarya Sundaresan, Laura A. Banaszynski
Software Mentions: 2
Published: almost 6 years ago

10.7554/eLife.10134

Affinity and dose of TCR engagement yield proportional enhancer and gene activity in CD4+ T cells
Cited by: 62
Author(s): Karmel A. Allison, Enikö Sajti, Jana G. Collier, David Gosselin, Ty D. Troutman, Erica L. Stone, Stephen M. Hedrick, Christopher K. Glass
Software Mentions: 2
Published: about 10 years ago

10.3390/ijms21217966

Differential Defense Responses of Upland and Lowland Switchgrass Cultivars to a Cereal Aphid Pest
Cited by: 5
Author(s): Lise Pingault, Nathan A. Palmer, Kyle G. Koch, Tiffany Heng-Moss, Jeffrey D. Bradshaw, Javier Seravalli, Paul Twigg, Joe Louis, Gautam Sarath
Software Mentions: 2
Published: over 5 years ago

10.3390/ijms21228474

Gene Expression Profiling in Huntington’s Disease: Does Comorbidity with Depressive Symptoms Matter?
Cited by: 6
Author(s): Gabriela Delevati Colpo, Natália Pessoa Rocha, Erin Furr Stimming, Antônio Lúcio Teixeira
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-021-92174-3

Heterotrophic euglenid Rhabdomonas costata resembles its phototrophic relatives in many aspects of molecular and cell biology
Cited by: 5
Author(s): Petr Soukal, Štěpánka Hrdá, Anna Karnkowska, Rafał Milanowski, Jana Szabová, Miluše Hradilová, Hynek Strnad, Čestmı́r Vlček, Ivan Čepička, Vladimı́r Hampl
Software Mentions: 2
Published: about 5 years ago

10.3390/genes12050614

Novel lincRNA Discovery and Tissue-Specific Gene Expression across 30 Normal Human Tissues
Cited by: 3
Author(s): Xianfeng Chen, Zhifu Sun
Software Mentions: 2
Published: about 5 years ago

10.7554/eLife.70948

Inducible and reversible inhibition of miRNA-mediated gene repression in vivo
Cited by: 17
Author(s): Gaspare La Rocca, Bryan King, Bing Shui, Xiaohua Li, Minsi Zhang, Kemal M. Akat, Paul Ogrodowski, Chiara Mastroleo, Kevin Chen, Vincenzo Cavalieri, Yilun Ma, Viviana Anelli, Doron Betel, Joana A. Vidigal, Thomas Tuschl, Gunter Meister, Craig B. Thompson, Tullia Lindsten, Kevin M. Haigis, Andrea Ventura
Software Mentions: 2
Published: almost 5 years ago

10.3390/genes12060840

Transcriptome Profiling of Embryonic Retinal Pigment Epithelium Reprogramming
Cited by: 7
Author(s): Jared Austin Tangeman, Agustín Luz-Madrigal, Sutharzan Sreeskandarajan, Erika Grajales-Esquivel, Lin Liu, Chun Liang, Panagiotis A. Tsonis, Katia Del Rio‐Tsonis
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-021-92553-w

Activation and detoxification of cassava cyanogenic glucosides by the whitefly Bemisia tabaci
Cited by: 14
Author(s): Michael L. A. E. Easson, Osnat Malka, Christian Paetz, Anna Hojná, Michael Reichelt, Beate Stein, Sharon van Brunschot, Ester Feldmesser, Lahcen I. Campbell, John Colvin, Stephan Winter, Shai Morin, Jonathan Gershenzon, Daniel Giddings Vassão
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-021-92772-1

MCT4 is induced by metastasis-enhancing pathogenic mitochondrial NADH dehydrogenase gene mutations and can be a therapeutic target
Cited by: 8
Author(s): Keizo Takenaga, Nobuko Koshikawa, Masumi Akimoto, Yasutoshi Tatsumi, Jason Lin, Makiko Itami, Hiroki Nagase
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-021-92830-8

Serine residues 726 and 780 have nonredundant roles regulating STAT5a activity in luminal breast cancer
Cited by: 6
Author(s): Alicia E. Woock, Jacqueline M Grible, Amy L. Olex, J. Chuck Harrell, Patricija Zot, Michael O. Idowu, Charles V. Clevenger
Software Mentions: 2
Published: about 5 years ago

10.1534/g3.119.400357

Utilization of Tissue Ploidy Level Variation in de Novo Transcriptome Assembly of Pinus sylvestris
Cited by: 13
Author(s): Darío I. Ojeda, Tiina M. Mattila, Tom Ruttink, Sonja Kujala, Katri Kärkkäinen, Jukka‐Pekka Verta, Tanja Pyhäjärvi
Software Mentions: 2
Published: almost 7 years ago

10.3390/genes8080206

Viral Infection Identifies Micropeptides Differentially Regulated in smORF-Containing lncRNAs
Cited by: 40
Author(s): Brandon S. Razooky, Benedikt Obermayer, Joshua Biggs O'May, Alexander Tarakhovsky
Software Mentions: 2
Published: almost 9 years ago

10.1371/journal.pone.0136764

Impact of Genomics Platform and Statistical Filtering on Transcriptional Benchmark Doses (BMD) and Multiple Approaches for Selection of Chemical Point of Departure (PoD)
Cited by: 43
Author(s): Anna Francina Webster, Nikolai L. Chepelev, Rémi Gagné, Byron Kuo, Leslie Recio, Andrew Williams, Carole L. Yauk
Software Mentions: 2
Published: almost 11 years ago

10.3390/plants9111548

RNA-Seq Time Series of Vitis vinifera Bud Development Reveals Correlation of Expression Patterns with the Local Temperature Profile
Cited by: 6
Author(s): Boas Pucker, Anna Schwandner, Sarah Becker, Ludger Hausmann, Prisca Viehöver, Reinhard Töpfer, Bernd Weißhaar, Daniela Holtgräwe
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-021-93080-4

A high plane of nutrition during early life alters the hypothalamic transcriptome of heifer calves
Cited by: 6
Author(s): José María Sánchez, Kate Keogh, A. K. Kelly, C.J. Byrne, P. Lonergan, David A. Kenny
Software Mentions: 2
Published: about 5 years ago

10.3390/plants9060674

Regulatory Potential of bHLH-Type Transcription Factors on the Road to Rubber Biosynthesis in Hevea brasiliensis
Cited by: 3
Author(s): Tomoko Yamaguchi, Y. Kurihara, Yuko Makita, Emiko Okubo-Kurihara, Ami Kageyama, Emi Osada, Setsuko Shimada, Hiroko Tsuchida, Hiroaki Shimada, Minami Matsui
Software Mentions: 2
Published: about 6 years ago

10.1038/s41598-021-93708-5

FHL-1 interacts with human RPE cells through the α5β1 integrin and confers protection against oxidative stress
Cited by: 6
Author(s): Ruhul Choudhury, Nadhim Bayatti, Richard Scharff, Ewa Szula, Viranga Tilakaratna, Maja Søberg Udsen, Selina McHarg, Janet A. Askari, Martin J. Humphries, Paul Bishop, Simon J. Clark
Software Mentions: 2
Published: about 5 years ago

10.3390/plants10020304

Preferential Ribosome Loading on the Stress-Upregulated mRNA Pool Shapes the Selective Translation under Stress Conditions
Cited by: 5
Author(s): Yan Chen, Min Liu, Zhicheng Dong
Software Mentions: 2
Published: over 5 years ago

10.1093/molbev/msaa071

Rampant Misexpression in a Mimulus (Monkeyflower) Introgression Line Caused by Hybrid Sterility, Not Regulatory Divergence
Cited by: 7
Author(s): Rachel E. Kerwin, Andrea L. Sweigart
Software Mentions: 2
Published: over 6 years ago

10.1534/g3.116.036194

Age and Diet Affect Genetically Separable Secondary Injuries that Cause Acute Mortality Following Traumatic Brain Injury in Drosophila
Cited by: 32
Author(s): Rebeccah J. Katzenberger, Barry Ganetzky, David A. Wassarman
Software Mentions: 2
Published: over 9 years ago

10.3390/ijms21228452

A Lipidomic Signature Complements Stemness Features Acquisition in Liver Cancer Cells
Cited by: 9
Author(s): Irma Magaly Rivas Serna, Ilaria Romito, Andrea Maugeri, Oriana Lo Re, Sebastiano Giallongo, Gianluigi Mazzoccoli, Jude A. Oben, Giovanni Li Volti, Tommaso Mazza, Anna Alisi, Manlio Vinciguerra
Software Mentions: 2
Published: over 5 years ago

10.3390/ijms221910589

Transcriptome and Proteome Analysis Revealed Key Pathways Regulating Final Stage of Oocyte Maturation of the Turkey (Meleagris gallopavo)
Cited by: 1
Author(s): Mariola Słowińska, Łukasz Paukszto, Laura Pardyak, J Jastrzebski, Ewa Liszewska, Joanna Bukowska, Krzysztof Kozłowski, Jan Jankowski, Barbara Bilińska, Andrzej Ciereszko
Software Mentions: 2
Published: almost 5 years ago

10.1038/s41598-021-94544-3

The value of GATA6 immunohistochemistry and computer-assisted diagnosis to predict clinical outcome in advanced pancreatic cancer
Cited by: 11
Author(s): Kai Duan, Gun-Ho Jang, Robert C. Grant, Julie M. Wilson, Faiyaz Notta, Grainne M. O’Kane, Jennifer J. Knox, Steven Gallinger, Sandra E. Fischer
Software Mentions: 2
Published: almost 5 years ago

Projects: cran: STAR

Science Score: 100/100

Bonuses:

Papers Mentioning STAR 5,759