cran: STAR | Projects | Ecosyste.ms: Papers

10.1038/s41598-018-37060-1

Susceptibility of Escherichia coli O157:H7 grown at low temperatures to the krypton-chlorine excilamp
Cited by: 13
Author(s): Jae Ik Lee, Sang‐Soon Kim, Dong Hyun Kang
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-018-37413-w

RNA-Seq transcriptome analysis shows anti-tumor actions of melatonin in a breast cancer xenograft model
Cited by: 21
Author(s): Bruna V. Jardim‐Perassi, Pâmela Almeida Alexandre, Nathália Martins Sonehara, Rubens de Paula-Junior, Osvaldo Reis Júnior, Heidge Fukumasu, Roger Chammas, Luiz Lehmann Coutinho, Débora Aparecida Pires de Campos Zuccari
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-018-38186-y

Human macrophages survive and adopt activated genotypes in living zebrafish
Cited by: 18
Author(s): Colin D. Paul, Alexus Devine, Kevin Bishop, Qing Xu, William J. Wulftange, Hannah A. Burr, Kathryn M. Daly, Chaunte Lewis, Daniel S. Green, Jack R. Staunton, Swati Choksi, Zheng-gang Liu, Kandice Tanner
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-019-39239-6

Integrated single-base resolution maps of transcriptome, sRNAome and methylome of Tomato yellow leaf curl virus (TYLCV) in tomato
Cited by: 22
Author(s): Álvaro Piedra-Aguilera, Chen Jiao, Ana P. Luna, Francisco Villanueva, Marc Dabad, Anna Esteve‐Codina, Juan Antonio Díaz-Pendón, Zhangjun Fei, Eduardo R. Bejarano, Araceli G. Castillo
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-019-40781-6

Survey of allele specific expression in bovine muscle
Cited by: 15
Author(s): Gabriel Guillocheau, Abdelmajid El Hou, Cédric Meersseman, Diane Esquerré, Emmanuelle Rebours, Rabia Letaïef, Morgane Simao, Nicolas Hypolite, Emmanuelle Bourneuf, Nicolas Bruneau, Anne Vaiman, Christy J. Vander Jagt, Amanda J. Chamberlain, Dominique Rocha
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-019-40809-x

Single-cell transcriptome analysis identifies distinct cell types and niche signaling in a primary gastric organoid model
Cited by: 23
Author(s): Jiamin Chen, Billy T. Lau, Noemi Andor, Susan M. Grimes, Christine Handy, Christina Wood-Bouwens, Hanlee P. Ji
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-019-41803-z

Single-cell assessment of transcriptome alterations induced by Scriptaid in early differentiated human haematopoietic progenitors during ex vivo expansion
Cited by: 10
Author(s): Peng Hua, Barbara Kronsteiner, Mark van der Garde, Neil Ashley, Diana Hernandez, Marina Tarunina, Lilian Hook, Yen Choo, Irene Roberts, Adam J. Mead, Suzanne M. Watt
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-019-42162-5

Silencing an insulin-induced lncRNA, LncASIR, impairs the transcriptional response to insulin signalling in adipocytes
Cited by: 16
Author(s): Ufuk Degirmenci, Jia Li, Yen Ching Lim, Diana Teh Chee Siang, Shibo Lin, Hui Liang, Li Sun
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-019-42019-x

Inheritance patterns of the transcriptome in hybrid chickens and their parents revealed by expression analysis
Cited by: 9
Author(s): Hongchang Gu, Xin Qi, Yaxiong Jia, Zebin Zhang, Changsheng Nie, Xinghua Li, Junying Li, Zhihua Jiang, Qiong Wang, Lujiang Qu
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-019-42568-1

A molecular biomarker for prediction of clinical outcome in children with ASD, constipation, and intestinal inflammation
Cited by: 10
Author(s): Stephen J. Walker, Carl D. Langefeld, Kip D. Zimmerman, Marshall Z. Schwartz, Arthur Krigsman
Software Mentions: 2
Published: about 7 years ago

10.1038/s41598-019-42578-z

Single cell RNA-sequencing identified Dec2 as a suppressive factor for spermatogonial differentiation by inhibiting Sohlh1 expression
Cited by: 6
Author(s): Yoshinori Makino, Niels H. Jensen, Naoko Yokota, Moritz J. Rossner, Haruhiko Akiyama, Katsuhiko Shirahige, Yuki Okada
Software Mentions: 2
Published: about 7 years ago

10.1038/s41598-019-42731-8

Abiotic and biotic stresses induce a core transcriptome response in rice
Cited by: 112
Author(s): Stephen P. Cohen, Jan E. Leach
Software Mentions: 2
Published: about 7 years ago

10.1038/s41598-019-43269-5

Identification and functional prediction of cold-related long non-coding RNA (lncRNA) in grapevine
Cited by: 40
Author(s): Pengfei Wang, Lingmin Dai, Jun Ai, Yongmei Wang, Fengshan Ren
Software Mentions: 2
Published: about 7 years ago

10.1038/s41598-019-43426-w

Human gut derived-organoids provide model to study gluten response and effects of microbiota-derived molecules in celiac disease
Cited by: 67
Author(s): Rachel Freire, Laura Ingano, Gloria Serena, Murat Çetinbaş, Anthony Anselmo, Anna Sapone, Ruslan I. Sadreyev, Alessio Fasano, Stefania Senger
Software Mentions: 2
Published: about 7 years ago

10.1038/s41598-019-45973-8

Chronic disturbance in the thalamus following cranial irradiation to the developing mouse brain
Cited by: 1
Author(s): Martina Boström, Yohanna Eriksson, Jolie Danial, Thomas Björk‐Eriksson, Marie Kalm
Software Mentions: 2
Published: about 7 years ago

10.1038/s41598-019-46656-0

REV-ERBα and REV-ERBβ function as key factors regulating Mammalian Circadian Output
Cited by: 57
Author(s): Ryosuke Ikeda, Yoshiki Tsuchiya, Nobuya Koike, Yasuhiro Umemura, Hitoshi Inokawa, Ryutaro Ono, Maho Inoue, Yuh Sasawaki, Tess Grieten, Naoki Okubo, Kazuya Ikoma, Hiroyoshi Fujiwara, Toshikazu Kubo, Kazuhiro Yagita
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41598-019-46462-8

HLA class II-Restricted CD8+ T cells in HIV-1 Virus Controllers
Cited by: 5
Author(s): Tinashe Nyanhete, Alyse Frisbee, Todd Bradley, William J. Faison, Elizabeth Robins, Tamika L. Payne, Stephanie A. Freel, Sheetal Sawant, Kent J. Weinhold, Kevin Wiehe, Barton F. Haynes, Guido Ferrari, Qi-Jing Li, M. Anthony Moody, Georgia D. Tomaras
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41598-019-47659-7

Colorectal cancer cells respond differentially to autophagy inhibition in vivo
Cited by: 42
Author(s): Annie Lauzier, Josiann Normandeau-Guimond, Vanessa Vaillancourt-Lavigueur, Vincent Boivin, Martine Charbonneau, Nathalie Rivard, Michelle S. Scott, Claire M. Dubois, Steve Jean
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41598-019-46916-z

Constraints to counting bioluminescence producing cells by a commonly used transgene promoter and its implications for experimental design
Cited by: 5
Author(s): Eman Mosaad, Kathryn Futrega, Inge Seim, Brian Gloss, Karen Chambers, Judith A. Clements, Michael Doran
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41598-019-49551-w

A multi-omics analysis of the grapevine pathogen Lasiodiplodia theobromae reveals that temperature affects the expression of virulence- and pathogenicity-related genes
Cited by: 44
Author(s): Carina Félix, Rodrigo Meneses, Micael F. M. Gonçalves, Laurentijn Tilleman, Ana Sofia Duarte, Jesús V. Jorrín Novo, Yves Van de Peer, Dieter Deforce, Filip Van Nieuwerburgh, Ana Cristina Esteves, Artur Alves
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41598-020-70412-4

Transcriptional mutagenesis dramatically alters genome-wide p53 transactivation landscape
Cited by: 2
Author(s): Shuo Liang, Monika Ezerskyte, Jingwen Wang, Vicent Pelechano, Kristian Dreij
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41598-020-70616-8

Early pregnancy-induced transcripts in peripheral blood immune cells in Bos indicus heifers
Cited by: 18
Author(s): Cecília Constantino Rocha, Sónia Cristina da Silva Andrade, Gustavo Augusto Schmidt de Melo, Igor Garcia Motta, Luiz Lehmann Coutinho, Ángela María Gonella-Diaza, Mário Binelli, Guilherme Pugliesi
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41598-020-70730-7

Collagen VIα2 chain deficiency causes trabecular bone loss by potentially promoting osteoclast differentiation through enhanced TNFα signaling
Cited by: 11
Author(s): Hai Thanh Pham, Vardit Kram, Qurratul-Ain Dar, Taishi Komori, Youngmi Ji, Payam Mohassel, Jachinta Rooney, Li Li, Tina M. Kilts, C. Bönnemann, Shireen R. Lamandé, Marian F. Young
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41598-020-70040-y

Mycoplasma hyopneumoniae J elicits an antioxidant response and decreases the expression of ciliary genes in infected swine epithelial cells
Cited by: 6
Author(s): Scheila Gabriele Mucha, Mariana Galvão Ferrarini, Carol Moraga, Alex Di Génova, Laurent Guyon, Florence Tardy, Sophie Rome, Marie‐France Sagot, Arnaldo Zaha
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41598-020-71904-z

Mating and blood-feeding induce transcriptome changes in the spermathecae of the yellow fever mosquito Aedes aegypti
Cited by: 18
Author(s): Carolina Camargo, Yasir H. Ahmed-Braimah, I. Alexandra Amaro, Laura C. Harrington, Mariana F. Wolfner, Frank W. Avila
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41598-020-73000-8

Changes in transcriptomic response to salinity stress induce the brackish water adaptation in a freshwater snail
Cited by: 5
Author(s): Takumi Yokomizo, Yuma Takahashi
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41598-020-73166-1

High-fat diet and estrogen impacts the colon and its transcriptome in a sex-dependent manner
Cited by: 25
Author(s): Linnea Hases, Amena Archer, Rajitha Indukuri, Madeleine Birgersson, Christina Savva, Marion Korach-André, Cecilia Williams
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41598-020-73046-8

Rat pancreatectomy combined with isoprenaline or uninephrectomy as models of diabetic cardiomyopathy or nephropathy
Cited by: 2
Author(s): Louise Thisted, Morten Østergaard, Annemarie A. Pedersen, Philip J. Pedersen, Ross T Lindsay, Andrew Murray, Lisbeth Nielsen Fink, T. Pedersen, Thomas Secher, Thea T. Johansen, Sebastian T. Thrane, Torben Skarsfeldt, Jacob Jelsing, Morten B. Thomsen, Nora E. Zois
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41598-020-73081-5

Top-ranked expressed gene transcripts of human protein-coding genes investigated with GTEx dataset
Cited by: 19
Author(s): Kuo-Feng Tung, Chao‐Yu Pan, Chao-Hsin Chen, Wen-chang Lin
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41598-020-74989-8

Differences in maternal gene expression in Cesarean section delivery compared with vaginal delivery
Cited by: 4
Author(s): Prachi Kothiyal, Keriann Schulkers, Xinyue Liu, Sahel Hazrati, Thierry Vilboux, Luis M. Gómez, Kathi Huddleston, Wendy S. W. Wong, John E. Niederhuber, Thomas P. Conrads, G. Larry Maxwell, Suchitra K. Hourigan
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-020-75243-x

A large deletion on CFA28 omitting ACSL5 gene is associated with intestinal lipid malabsorption in the Australian Kelpie dog breed
Cited by: 4
Author(s): Mitchell O’Brien, Niek Beijerink, Mandy Sansom, Sarah Thornton, Tracy Chew, Claire M. Wade
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-020-75437-3

The Fuchs corneal dystrophy-associated CTG repeat expansion in the TCF4 gene affects transcription from its alternative promoters
Cited by: 9
Author(s): Alex Sirp, K. Costa Morais Leite, Jürgen Tuvikene, Kaja Nurm, Mari Sepp, Tõnis Timmusk
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-020-76193-0

ZNF354C is a transcriptional repressor that inhibits endothelial angiogenic sprouting
Cited by: 5
Author(s): James A. Oo, Barnabas Irmer, Stefan Günther, Timothy Warwick, Katalin Pálfi, Judit Izquierdo Ponce, Tom Teichmann, Beatrice Pflüger‐Müller, Ralf Gilsbach, Ralf P. Brandes, Matthias Leisegang
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-020-77061-7

Peripheral oxytocin injection modulates vomeronasal sensory activity and reduces pup-directed aggression in male mice
Cited by: 9
Author(s): Thiago S. Nakahara, Antônio Pedro Camargo, Pedro H M Magalhães, Mateus A.A. Souza, Pedro G. Ribeiro, Paulo H Martins-Netto, Vinicius Miessler de Andrade Carvalho, Juliana José, Fábio Papes
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-020-77586-x

An integrative atlas of chicken long non-coding genes and their annotations across 25 tissues
Cited by: 15
Author(s): Frédéric Jehl, Kévin Muret, Maria Bernard, Morgane Boutin, Lætitia Lagoutte, Colette Désert, Patrice Déhais, Diane Esquerré, Hervé Acloque, Elisabetta Giuffra, Sarah Djebali, Sylvain Foissac, Thomas Derrien, Frédérique Pitel, Tatiana Zerjal, Christophe Klopp, Sandrine Lagarrigue
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-020-78297-z

Genes, pathways and networks responding to drought stress in oil palm roots
Cited by: 18
Author(s): Le Wang, May Lee, Baoqing Ye, Gen Hua Yue
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-020-78507-8

Age related extracellular matrix and interstitial cell phenotype in pulmonary valves
Cited by: 8
Author(s): Shaohua Wu, Vikas Kumar, Xiao Peng, Mitchell Kuss, Jung Yul Lim, Chittibabu Guda, Jonathan T. Butcher, Bin Duan
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-020-78359-2

Development of a human primary gut-on-a-chip to model inflammatory processes
Cited by: 65
Author(s): Claudia Beaurivage, Austė Kanapeckaitė, Cindy J.M. Loomans, Kai S. Erdmann, Jan Stallen, Richard A. J. Janssen
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-020-78417-9

The vascular targeted citrus FLOWERING LOCUS T3 gene promotes non-inductive early flowering in transgenic Carrizo rootstocks and grafted juvenile scions
Cited by: 17
Author(s): Juliana M. Soares, Kyle C. Weber, Wenming Qiu, Daniel Stanton, Lamiaa M. Mahmoud, Hao Wu, Patrick Huyck, Janice Zale, Kawther Al Jasim, Jude W. Grosser, Manjul Dutt
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-020-77398-z

Extracellular vesicle-associated repetitive element DNAs as candidate osteosarcoma biomarkers
Cited by: 19
Author(s): Linda Cambier, Kevin Stachelek, Martin Tříska, Rima Jubran, Manyu Huang, Wuyin Li, Jianying Zhang, Jitian Li, David Cobrinik
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-020-80334-w

Mitochondrial gene expression in single cells shape pancreatic beta cells' sub-populations and explain variation in insulin pathway
Cited by: 9
Author(s): Hadar Medini, T. Cohen, Dan Mo
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-020-79948-x

Role of PAI-1 in hepatic steatosis and dyslipidemia
Cited by: 44
Author(s): Joshua A. Levine, Carlota Oleaga, Mesut Eren, Ansel P. Amaral, Shu Meng, Elizabeth Lux, Sadiya S. Khan, Sanjiv J. Shah, Yasuhiro Omura, Nathalie Pamir, Joshua Hay, Grant D. Barish, Toshio Miyata, Hagai Tavori, Sergio Fazio, Douglas E. Vaughan
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-020-80741-z

Gene expression and functional abnormalities in XX/Sry Leydig cells
Cited by: 3
Author(s): Shogo Yanai, Takashi Baba, Kai Inui, Kanako Miyabayashi, Seongwoo Han, Miki Inoue, Fumiya Takahashi, Masami Kanai‐Azuma, Yasuyuki Ohkawa, Man Ho Choi, Ken Ichirou Morohashi
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-020-80178-4

A role for orphan nuclear receptor liver receptor homolog-1 (LRH-1, NR5A2) in primordial follicle activation
Cited by: 11
Author(s): Marie-Charlotte Meinsohn, Camilla H K Hughes, Anthony Estienne, Hatice D. Saatcioglu, David Pépin, Raj Duggavathi, Bruce D. Murphy
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-020-79356-1

Late p65 nuclear translocation in glioblastoma cells indicates non-canonical TLR4 signaling and activation of DNA repair genes
Cited by: 6
Author(s): Isabele Fattori Moretti, Antônio M. Lerário, Marina Trombetta-Lima, Paula R. Sola, Roseli da Silva Soares, Sueli Mieko Oba-Shinjo, Suely Kazue Nagahashi Marie
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-021-81794-4

Valproic acid influences the expression of genes implicated with hyperglycaemia-induced complement and coagulation pathways
Cited by: 17
Author(s): Marina Barreto Felisbino, Mark Ziemann, Ishant Khurana, Jun Okabe, Keith Al-Hasani, Scott Maxwell, K N Harikrishnan, C. Oliveira, Maria Luiza S. Mello, Assam El‐Osta
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-021-81340-2

Screening for potential targets to reduce stenosis in bioprosthetic heart valves
Cited by: 3
Author(s): Rudi Foth, Orr Shomroni, Matthias Sigler, Jürgen Hörer, Julie Cleuziou, Thomas Paul, Katja Eildermann
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-021-82672-9

Temperature and species-dependent regulation of browning in retrobulbar fat
Cited by: 0
Author(s): Fatemeh Rajaii, Dong Won Kim, Jianbo Pan, Nicholas R. Mahoney, Charles G. Eberhart, Jiang Qian, Seth Blackshaw
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-021-82202-7

RNAseq shows an all-pervasive day-night rhythm in the transcriptome of the pacemaker of the heart
Cited by: 7
Author(s): Yanwen Wang, Cali Anderson, Halina Dobrzynski, George Hart, Alicia D’Souza, Mark R. Boyett
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-021-82551-3

Arsenic hexoxide has differential effects on cell proliferation and genome-wide gene expression in human primary mammary epithelial and MCF7 cells
Cited by: 8
Author(s): Donguk Kim, Na Yeon Park, Keunsoo Kang, Stuart K. Calderwood, Dong‐Hyung Cho, Ill Ju Bae, Heeyoun Bunch
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-021-83215-y

Modulating the unfolded protein response with ONC201 to impact on radiation response in prostate cancer cells
Cited by: 7
Author(s): Francesca Amoroso, Kimberley Glass, Reema Singh, Francisco Liberal, R.E. Steele, Sarah Maguire, Rohinton S. Tarapore, Joshua E. Allen, Sandra Van Schaeybroeck, Karl T. Butterworth, Kevin M. Prise, Joe M. O’Sullivan, Suneil Jain, David J. Waugh, Ian G. Mills
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-021-83876-9

Highly dampened blood transcriptome response in HIV patients after respiratory infection
Cited by: 0
Author(s): Subhashini A. Sellers, William A. Fischer, Mark T. Heise, Klaus Schughart
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-021-83872-z

Defining early changes in Alzheimer’s disease from RNA sequencing of brain regions differentially affected by pathology
Cited by: 21
Author(s): Boris Guennewig, Julia Lim, Lee Marshall, Andrew N. McCorkindale, Patrick Jarmo Paasila, Ellis Patrick, Jillian J. Kril, Glenda M. Halliday, Antony A. Cooper, Greg T. Sutherland
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-021-85230-5

Modeling preeclampsia using human induced pluripotent stem cells
Cited by: 25
Author(s): Mariko Horii, Robert Morey, Tony Bui, Ojeni Touma, Katelyn N. Nelson, Hee-Young Cho, Hannah Rishik, Louise C. Laurent, Mana M. Parast
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-021-85801-6

Selective time-dependent changes in activity and cell-specific gene expression in human postmortem brain
Cited by: 33
Author(s): Fabien Dachet, James Brown, Tibor Vályi-Nagy, Kunwar Digvijay Narayan, Anna Serafini, Nathan Boley, T Gingeras, S Celniker, Gayatry Mohapatra, Jeffrey A. Loeb
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-021-86675-4

Delineating proinflammatory microenvironmental signals by ex vivo modeling of the immature intestinal stroma
Cited by: 1
Author(s): Mari Ichinose, Nobumi Suzuki, Tongtong Wang, Josephine Wright, Tamsin R.M. Lannagan, Laura Vrbanac, Hiroki Kobayashi, Krystyna A. Gieniec, Joseph Kim Fai Ng, Souzaburo Ihara, Chris Mavrangelos, Yoku Hayakawa, Patrick A. Hughes, Daniel L. Worthley, Susan L. Woods
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-021-86623-2

Transcriptome analysis of human dermal fibroblasts following red light phototherapy
Cited by: 8
Author(s): Evan Austin, Eugene Koo, Alexander A. Merleev, Denis Torre, Alina I. Marusina, Guillaume Luxardi, Andrew Mamalis, R. Rivkah Isseroff, Avi Ma’ayan, Emanual Maverakis, Jared Jagdeo
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-021-87091-4

Evaluation of AXIN1 and AXIN2 as targets of tankyrase inhibition in hepatocellular carcinoma cell lines
Cited by: 7
Author(s): Wenhui Wang, Pengyu Liu, Marla Lavrijsen, Shan Li, Ruyi Zhang, Shanshan Li, Wesley S van de Geer, Harmen J.G. van de Werken, Maikel P. Peppelenbosch, Ron Smits
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-021-88382-6

Aggressive and recurrent ovarian cancers upregulate ephrinA5, a non-canonical effector of EphA2 signaling duality
Cited by: 10
Author(s): Joonas Jukonen, Lidia Moyano‐Galceran, Katrin Höpfner, Elina Pietilä, Laura Lehtinen, Kaisa Huhtinen, Erika Gucciardo, Johanna Hynninen, Sakari Hietanen, Seija Grénman, Päivi M. Ojala, Olli Carpén, Kaisa Lehti
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-021-87828-1

The BET inhibitor attenuates the inflammatory response and cell migration in human microglial HMC3 cell line
Cited by: 24
Author(s): Mina Baek, Eunyoung Yoo, Hae In Choi, Ga Yeong An, Jin Choul Chai, Young Seek Lee, Kyoung Hwa Jung, Young Gyu Chai
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-021-87842-3

An examination of skeletal muscle and hepatic tissue transcriptomes from beef cattle divergent for residual feed intake
Cited by: 9
Author(s): Clare McKenna, Kate Keogh, Richard K. Porter, Sinéad M. Waters, Paul Cormican, David A. Kenny
Software Mentions: 2
Published: about 5 years ago

10.1093/hmg/ddz038

Cellular α-synuclein pathology is associated with bioenergetic dysfunction in Parkinson’s iPSC-derived dopamine neurons
Cited by: 91
Author(s): Federico Zambon, Marta Cherubini, Hugo J. R. Fernandes, Charmaine Lang, Brent J. Ryan, Viola Volpato, Nora Bengoa-Vergniory, Siv Vingill, Moustafa Attar, Heather Booth, Walther Haenseler, Jane Vowles, Rory Bowden, Caleb Webber, Sally A. Cowley, Richard Wade‐Martins
Software Mentions: 2
Published: over 7 years ago

10.1093/hmg/ddy127

Mutations in glycyl-tRNA synthetase impair mitochondrial metabolism in neurons
Cited by: 26
Author(s): Veronika Boczonadi, Kathrin Meyer, Humberto Gonczarowska-Jorge, Helen Griffin, Andreas Roos, Marina Bartsakoulia, Boglárka Bánsági, Giulia Ricci, Fanni Palinkas, René P. Zahedi, Francesco Bruni, Brian K. Kaspar, Hanns Lochmüller, Kym M. Boycott, Juliane S. Müller, Rita Horvath
Software Mentions: 2
Published: over 8 years ago

10.1093/hmg/ddz169

Disease modeling of core pre-mRNA splicing factor haploinsufficiency
Cited by: 19
Author(s): Karen L. Wood, Charlie F. Rowlands, Wasay Mohiuddin Shaikh Qureshi, Huw B. Thomas, Weronika A. Buczek, Tracy A Briggs, Simon J. Hubbard, Kathryn E. Hentges, William G. Newman, Raymond T. O’Keefe
Software Mentions: 2
Published: almost 7 years ago

10.1093/hmg/ddab154

Placental endocrine insufficiency programs anxiety, deficits in cognition and atypical social behaviour in offspring
Cited by: 6
Author(s): David J. Harrison, Hugo Creeth, Hannah R. Tyson, Raquel Boqué-Sastre, Susan Hunter, Dominic M. Dwyer, Anthony R Isles, John Roshan
Software Mentions: 2
Published: about 5 years ago

10.1002/humu.24134

A functional variant on 20q13.33 related to glioma risk alters enhancer activity and modulates expression of multiple genes
Cited by: 12
Author(s): Mourad W. Ali, C. Pawan K. Patro, Jacqueline Jufen Zhu, Christopher H. Dampier, Sarah J. Plummer, Cem Kuscu, Mazhar Adli, Ching C. Lau, Rose Lai, Graham Casey
Software Mentions: 2
Published: over 5 years ago

10.1107/S2052252519010972

Why is interoperability between the two fields of chemical crystallography and protein crystallography so difficult?
Cited by: 9
Author(s): Alice Brink, John R. Helliwell
Software Mentions: 2
Published: almost 7 years ago

10.1186/s13046-018-0916-y

Enhanced efficacy of histone deacetylase inhibitor combined with bromodomain inhibitor in glioblastoma
Cited by: 25
Author(s): Meng Wang, Baocheng Wang, Weiwei Mao, Jiajia Wang, Zhao Yang, Qifeng Li, Chenran Zhang, Yujie Tang, Jie Ma
Software Mentions: 2
Published: almost 8 years ago

10.1186/s13046-019-1242-8

Heart failure drug proscillaridin A targets MYC overexpressing leukemia through global loss of lysine acetylation
Cited by: 24
Author(s): Elodie M. Da Costa, Gregory Armaos, Gabrielle McInnes, Annie Beaudry, Gaël Moquin‐Beaudry, Virginie Bertrand-Lehouillier, Maxime Caron, Chantal Richer, Pascal St-Onge, Jeffrey R. Johnson, Nevan J. Krogan, Yuka Sai, Michael Downey, Moutih Rafei, Meaghan Boileau, Kolja Eppert, Ema Flores-Díaz, André Haman, Trang Hoang, Daniel Sinnett, Christian Beauséjour, Serge McGraw, Noël J.-M. Raynal
Software Mentions: 2
Published: about 7 years ago

10.1186/s13046-019-1438-y

Role of mitochondria and cardiolipins in growth inhibition of breast cancer cells by retinoic acid
Cited by: 8
Author(s): Mineko Terao, Laura Goracci, Valentina Celestini, Mami Kurosaki, Marco Bolis, Alessandra Di Veroli, Arianna Vallerga, Maddalena Fratelli, Monica Lupi, Alessandro Corbelli, Fabio Fiordaliso, Maurizio Giannı̀, Gabriela Paroni, Adriana Zanetti, Gabriele Cruciani, Enrico Garattini
Software Mentions: 2
Published: over 6 years ago

10.1186/s13046-020-01799-1

CircRNA_0000392 promotes colorectal cancer progression through the miR-193a-5p/PIK3R3/AKT axis
Cited by: 68
Author(s): Hanchen Xu, Yujing Liu, Peiqiu Cheng, Chunyan Wang, Yang Liu, Wenjun Zhou, Yangxian Xu, Guang Ji
Software Mentions: 2
Published: over 5 years ago

10.1186/s13046-021-02046-x

Ref-1 redox activity alters cancer cell metabolism in pancreatic cancer: exploiting this novel finding as a potential target
Cited by: 15
Author(s): Silpa Gampala, Fenil Shah, Xiaoyu Lu, Hye-ran Moon, Olivia Babb, Nikkitha Umesh Ganesh, George E. Sandusky, Emily Hulsey, Lee Armstrong, Amber L Mosely, Bumsoo Han, Mircea Ivan, Jing-Ruey Joanna Yeh, Mark R. Kelley, Chi Zhang, Melissa L. Fishel
Software Mentions: 2
Published: almost 5 years ago

10.1084/jem.20180742

LUBAC determines chemotherapy resistance in squamous cell lung cancer
Cited by: 52
Author(s): E Josue Ruiz, Markus E. Diefenbacher, Jessica K. Nelson, Rocı́o Sancho, Fabio Pucci, Atanu Chakraborty, Paula Moreno, Alessandro Annibaldi, Gianmaria Liccardi, Vesela Encheva, Richard Mitter, Mathias T. Rosenfeldt, Ambrosius P. Snijders, Pascal Meier, Marco A. Calzado, Axel Behrens
Software Mentions: 2
Published: over 7 years ago

10.1084/jem.20191236

Dynamics of human monocytes and airway macrophages during healthy aging and after transplant
Cited by: 91
Author(s): Adam Byrne, Joseph E. Powell, B. O’Sullivan, Patricia P. Ogger, Ashley Hoffland, James Cook, Katie Bonner, Richard Hewitt, Simone Wolf, Poonam Ghai, Simone A. Walker, Samuel W. Lukowski, Philip L. Molyneaux, Sejal Saglani, Daniel C. Chambers, Toby M. Maher, Clare M. Lloyd
Software Mentions: 2
Published: over 6 years ago

10.1002/jev2.12042

Prostate cancer extracellular vesicles mediate intercellular communication with bone marrow cells and promote metastasis in a cholesterol‐dependent manner
Cited by: 35
Author(s): Stephen E. Henrich, Kaylin M. McMahon, Michael P. Plebanek, Andrea E. Calvert, Timothy Joel Feliciano, Samuel K. Parrish, Fabio Tavora, Anthony Mega, André De Souza, Benedito A. Carneiro, C. Shad Thaxton
Software Mentions: 2
Published: over 5 years ago

10.1155/2016/4503840

Profiling of the Predicted Circular RNAs in Ductal In Situ and Invasive Breast Cancer: A Pilot Study
Cited by: 30
Author(s): Marco Galasso, Giorgio Costantino, Lorenzo Pasquali, Linda Minotti, Federica Baldassari, Fabio Corrà, Chiara Agnoletto, Stefano Volinia
Software Mentions: 2
Published: over 10 years ago

10.7150/ijms.48014

circRNA expression pattern and ceRNA network in the pathogenesis of aseptic loosening after total hip arthroplasty
Cited by: 4
Author(s): Shenghui Ni, Tianlong Jiang, Shimin Hao, Peng Luo, Penghao Wang, Yaser Almatari, Yu Wang, Zhe Zhang, Lei Guo
Software Mentions: 2
Published: over 5 years ago

10.1038/s41366-020-00694-1

Type 2 diabetes is associated with impaired jejunal enteroendocrine GLP-1 cell lineage in human obesity
Cited by: 23
Author(s): Céline Osinski, Léa Le Gleau, Christine Poitou, Juan de Toro‐Martín, Laurent Genser, Magali Fradet, Hédi Soula, Armelle Leturque, Corinne Blugeon, Laurent Jourdren, Edwige-Ludiwyne Hubert, Karine Clément, Patricia Serradas, Agnès Ribeiro
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41366-020-00716-y

Reduced lipolysis in lipoma phenocopies lipid accumulation in obesity
Cited by: 9
Author(s): Diana Le Duc, Lin Chen, Yulia Popkova, Zuqin Yang, Akhil Velluva, Mehmet Volkan Çakır, Sonja Grunewald, Jan C. Simon, Andreas Dietz, Dirk Dannenberger, Antje Garten, Johannes R. Lemke, Jürgen Schiller, Matthias Blüher, Pamela A. Nono Nankam, Ulrike Rolle-Kampczyk, Martin von Bergen, Janet Kelso, Torsten Schöneberg
Software Mentions: 2
Published: over 5 years ago

10.1186/s13045-020-00933-y

The functional epigenetic landscape of aberrant gene expression in molecular subgroups of newly diagnosed multiple myeloma
Cited by: 17
Author(s): Samrat Roy Choudhury, Cody Ashby, Ruslana G. Tytarenko, Michael Bauer, Yan Wang, Shayu Deshpande, Judith Den, Carolina Schinke, Maurizio Zangari, Sharmilan Thanendrarajan, Faith E. Davies, Frits van Rhee, Gareth J. Morgan, Brian A Walker
Software Mentions: 2
Published: almost 6 years ago

10.1002/jmd2.12201

Selective screening for lysosomal storage disorders in a large cohort of minorities of African descent shows high prevalence rates and novel variants
Cited by: 5
Author(s): Renuka P. Limgala, Vyacheslav Furtak, Margarita Ivanova, Erk Changsila, Floyd Wilks, Marie Fidélia-Lambert, Özlem Göker-Alpan, Marjorie C. Gondré‐Lewis
Software Mentions: 2
Published: over 5 years ago

10.1167/iovs.62.12.16

Dual Inhibition of Histone Deacetylases and the Mechanistic Target of Rapamycin Promotes Apoptosis in Cell Line Models of Uveal Melanoma
Cited by: 3
Author(s): Ruchi P. Patel, Joanna R. Thomas, Katherine M. Curt, Christina M. Fitzsimmons, Pedro J. Batista, Susan E. Bates, Michael M. Gottesman, Robert W. Robey
Software Mentions: 2
Published: almost 5 years ago

10.1167/iovs.61.10.13

Identification and Characterization of N<sup>6</sup>-Methyladenosine CircRNAs and Methyltransferases in the Lens Epithelium Cells From Age-Related Cataract
Cited by: 24
Author(s): Pengfei Li, Hualin Yu, Guowei Zhang, Lihua Kang, Bai Qin, Yu Cao, Jiawei Luo, Xiaojuan Chen, Ying Wang, Miaomiao Qin, Jian Wu, Yemeng Huang, Xi Zou, Huaijin Guan, Yong Wang
Software Mentions: 2
Published: almost 6 years ago

10.1186/s13052-018-0521-x

Egg introduction during complementary feeding according to allergic risk: not just for peanuts!
Cited by: 3
Author(s): Elvira Verduci, Annamaria Bianchi, Marta Brambilla, Mauro Calvani
Software Mentions: 2
Published: about 8 years ago

10.3390/ijerph18020634

Adverse Birth Outcomes Due to Exposure to Household Air Pollution from Unclean Cooking Fuel among Women of Reproductive Age in Nigeria
Cited by: 12
Author(s): Jamie Roberman, Theophilus I. Emeto, Oyelola A. Adegboye
Software Mentions: 2
Published: over 5 years ago

10.2196/28684

Interrupting Sitting Time in Postmenopausal Women: Protocol for the Rise for Health Randomized Controlled Trial
Cited by: 1
Author(s): Sheri J. Hartman, Lindsay Dillon, Andrea Z. LaCroix, Loki Natarajan, Dorothy D. Sears, Neville Owen, David W. Dunstan, James F. Sallis, Simon Schenk, Matthew A. Allison, Michelle Takemoto, Alexandra Herweck, Bao Nguyen, Dori E. Rosenberg
Software Mentions: 2
Published: about 5 years ago

10.1186/s40425-018-0406-y

Ibuprofen supports macrophage differentiation, T cell recruitment, and tumor suppression in a model of postpartum breast cancer
Cited by: 39
Author(s): Nathan D. Pennock, Holly A. Martinson, Qiuchen Guo, Courtney B. Betts, Sonali Jindal, Takahiro Tsujikawa, Lisa M. Coussens, Virginia F. Borges, Pepper Schedin
Software Mentions: 2
Published: almost 8 years ago

10.1186/s40425-019-0747-1

Intratumoral immunoglobulin isotypes predict survival in lung adenocarcinoma subtypes
Cited by: 54
Author(s): Olga I. Isaeva, Г. В. Шаронов, Ekaterina O. Serebrovskaya, Maria A. Turchaninova, Andrew R. Zaretsky, Mikhail Shugay, Dmitriy M. Chudakov
Software Mentions: 2
Published: over 6 years ago

10.1136/jitc-2020-000832

Skin dendritic cells in melanoma are key for successful checkpoint blockade therapy
Cited by: 18
Author(s): Natasa Prokopi, Christoph H. Tripp, Bart Tummers, Florian Hornsteiner, Sarah Spoeck, Jeremy Chase Crawford, Derek R. Clements, Mirjana Efremova, Katharina Hutter, Lydia Bellmann, Giuseppe Cappellano, Bruno L. Cadilha, Sebastian Kobold, Louis Boon, Daniela Ortner, Zlatko Trajanoski, Suzie Chen, Tanja D. de Gruijl, Juliana Idoyaga, Douglas R. Green, Patrizia Stoitzner
Software Mentions: 2
Published: over 5 years ago

10.1038/s41388-019-0712-y

The induction of core pluripotency master regulators in cancers defines poor clinical outcomes and treatment resistance
Cited by: 48
Author(s): Anastasia C. Hepburn, R.E. Steele, Rajan Veeratterapillay, Laura Wilson, Evangelia E. Kounatidou, Amy Barnard, Philip Berry, James Cassidy, Mohammad Moad, A El-Sherif, Luke Gaughan, Ian G. Mills, Craig Robson, Rakesh Heer
Software Mentions: 2
Published: over 7 years ago

10.1038/s41388-019-0680-2

Isolation and characterization of patient-derived CNS metastasis-associated stromal cell lines
Cited by: 9
Author(s): Ben Yi Tew, Christophe Legendre, Gerald C. Gooden, Kyle N. Johnson, Rae Anne Martinez, Jeff Kiefer, Mark Bernstein, Jennifer Glen, Loren Butry, Aleksander Hinek, Steven Toms, Bodour Salhia
Software Mentions: 2
Published: over 7 years ago

10.1038/s41388-020-1210-y

Phosphorylation independent eIF4E translational reprogramming of selective mRNAs determines tamoxifen resistance in breast cancer
Cited by: 17
Author(s): Chun Gong, Ho Tsoi, Ka Chun Mok, J.T. K. Cheung, Ellen P.S. Man, Keiji Fujino, Ashely Wong, Eric W.‐F. Lam, Ui‐Soon Khoo
Software Mentions: 2
Published: over 6 years ago

10.1038/oncsis.2017.32

The prohibitin-repressive interaction with E2F1 is rapidly inhibited by androgen signalling in prostate cancer cells
Cited by: 17
Author(s): Sarah Koushyar, G Economides, S Zaat, Wen Guo Jiang, Charlotte Bevan, Dafydd Alwyn Dart
Software Mentions: 2
Published: about 9 years ago

10.1038/oncsis.2017.56

Effects of proton versus photon irradiation on (lymph)angiogenic, inflammatory, proliferative and anti-tumor immune responses in head and neck squamous cell carcinoma
Cited by: 41
Author(s): Marilena Lupu-Plesu, Audrey Claren, Sonia Martial, Ndiaye Pd, Kévin Lebrigand, Nicolas Pons, Damien Ambrosetti, Isabelle Peyrottes, J. Feuillade, J. Hérault, Maeva Dufies, J. Doyen, Gilles Pagès
Software Mentions: 2
Published: about 9 years ago

10.1515/jib-2019-0005

Integrating Molecular Biology and Bioinformatics Education
Cited by: 20
Author(s): Boas Pucker, Hanna Marie Schilbert, Sina Franziska Schumacher
Software Mentions: 2
Published: about 7 years ago

10.1194/jlr.M093740

ApoC-III ASO promotes tissue LPL activity in the absence of apoE-mediated TRL clearance
Cited by: 45
Author(s): Bastian Ramms, Sohan Patel, Chelsea Nora, Ariane Pessentheiner, Max W. Chang, Courtney R. Green, Gregory J. Golden, Patrick Secrest, Ronald M. Krauss, Christian M. Metallo, Chris Benner, Veronica J. Alexander, Joseph L. Witztum, Sotirios Tsimikas, Jeffrey D. Esko, Philip L.S.M. Gordts
Software Mentions: 2
Published: almost 7 years ago

10.1007/s10735-020-09926-0

Transferrin improved the generation of cardiomyocyte from human pluripotent stem cells for myocardial infarction repair
Cited by: 8
Author(s): Fengzhi Zhang, Hui Qiu, Xiaohui Dong, Chunlan Wang, Jie Na, Jin Zhou, Changyong Wang
Software Mentions: 2
Published: over 5 years ago

10.1007/s00109-020-01989-6

Long-term effects of empagliflozin on excitation-contraction-coupling in human induced pluripotent stem cell cardiomyocytes
Cited by: 9
Author(s): Steffen Pabel, Florian Reetz, Nataliya Dybkova, Orr Shomroni, Gabriela Salinas, Julian Mustroph, K Hammer, Gerd Hasenfuß, Nazha Hamdani, Lars S. Maier, Katrin Streckfuß‐Bömeke, Samuel Sossalla
Software Mentions: 2
Published: almost 6 years ago

10.1007/s00109-017-1582-9

A map of human circular RNAs in clinically relevant tissues
Cited by: 253
Author(s): Philipp G. Maass, Petar Glažar, Sebastian Memczak, Gunnar Dittmar, Irene Hollfinger, Luisa Schreyer, Aisha V. Sauer, Okan Toka, Alessandro Aiuti, Friedrich C. Luft, Nikolaus Rajewsky
Software Mentions: 2
Published: almost 9 years ago

10.1007/s00109-020-02020-8

3D culture conditions support Kaposi’s sarcoma herpesvirus (KSHV) maintenance and viral spread in endothelial cells
Cited by: 10
Author(s): Tatyana Dubich, Anne Dittrich, Kristine Bousset, Robert Geffers, Guntram Büsche, Mario Köster, Hansjörg Hauser, Thomas F. Schulz, Dagmar Wirth
Software Mentions: 2
Published: over 5 years ago

Projects: cran: STAR

Science Score: 100/100

Bonuses:

Papers Mentioning STAR 5,759