cran: STAR | Projects | Ecosyste.ms: Papers

10.3390/v13060976

Activation of the STAT3 Signaling Pathway by the RNA-Dependent RNA Polymerase Protein of Arenavirus
Cited by: 1
Author(s): Qingxing Wang, Qilin Xin, Weijuan Shang, Weiwei Wan, Gengfu Xiao, Leike Zhang
Software Mentions: 2
Published: over 3 years ago

10.1038/s42003-021-02123-z

Telomere damage promotes vascular smooth muscle cell senescence and immune cell recruitment after vessel injury
Cited by: 27
Author(s): Anna Uryga, Mandy O.J. Grootaert, Abel Martin Garrido, Sebnem Oc, Kirsty Foote, Joel Chappell, Alison Finigan, Francesca Rossiello, Fabrizio d’Adda di Fagagna, Dimitra Aravani, Helle F. Jørgensen, Martin R. Bennett
Software Mentions: 2
Published: over 3 years ago

10.1007/s00109-020-02020-8

3D culture conditions support Kaposi’s sarcoma herpesvirus (KSHV) maintenance and viral spread in endothelial cells
Cited by: 10
Author(s): Tatyana Dubich, Anne Dittrich, Kristine Bousset, Robert Geffers, Guntram Büsche, Mario Köster, Hansjörg Hauser, Thomas F. Schulz, Dagmar Wirth
Software Mentions: 2
Published: almost 4 years ago

10.1038/s42003-020-01411-4

Altered transcriptional and chromatin responses to rhinovirus in bronchial epithelial cells from adults with asthma
Cited by: 11
Author(s): Britney A. Helling, Débora R. Sobreira, Grace Hansen, Noboru Jo Sakabe, Kaixuan Luo, Christine Billstrand, Bharathi Laxman, Raluca Nicolae, Dan L. Nicolae, Yury A. Bochkov, James E. Gern, Marcelo A. Nóbrega, Steven R. White, Carole Ober
Software Mentions: 2
Published: about 4 years ago

10.1038/s42003-021-01844-5

Targeting natural splicing plasticity of APOBEC3B restricts its expression and mutagenic activity
Cited by: 7
Author(s): Abdul Rouf Banday, Olusegun O. Onabajo, Seraph Han-Yin Lin, Adeola Obajemu, Joselin M. Vargas, Krista A. Delviks-Frankenberry, Philippe Lamy, Ariunaa Bayanjargal, Clara Zettelmeyer, Óscar Flórez-Vargas, Vinay K. Pathak, Lars Dyrskjøt, Ludmila Prokunina‐Olsson
Software Mentions: 2
Published: over 3 years ago

10.1038/s42003-019-0657-2

Transcriptional programming and T cell receptor repertoires distinguish human lung and lymph node memory T cells
Cited by: 14
Author(s): Nathan Schoettler, Cara L. Hrusch, Kelly M. Blaine, Anne I. Sperling, Carole Ober
Software Mentions: 2
Published: about 5 years ago

10.1038/s42003-020-01543-7

Systemic viral spreading and defective host responses are associated with fatal Lassa fever in macaques
Cited by: 17
Author(s): Nicolas Baillet, Stéphanie Reynard, Émeline Perthame, Jimmy Hortion, Alexandra Journeaux, Mathieu Mateo, Xavier Carnec, Justine Schaeffer, Caroline Picard, Laura Barrot, Stéphane Barron, Audrey Vallvé, Aurélie Duthey, Frédéric Jacquot, Cathy Boehringer, Grégory Jouvion, Natalia Pietrosemoli, Rachel Legendre, Marie‐Agnès Dillies, Richard Allan, Catherine Legras-Lachuer, Caroline Carbonnelle, Hervé Raoul, Sylvain Baize
Software Mentions: 2
Published: almost 4 years ago

10.3390/v12060610

Differential Effects of Human Adenovirus E1A Protein Isoforms on Aerobic Glycolysis in A549 Human Lung Epithelial Cells
Cited by: 12
Author(s): Martin Prusinkiewicz, Jessie Tu, Mackenzie J. Dodge, Katelyn M. MacNeil, Sandi Radko-Juettner, Gregory J. Fonseca, Peter Pelka, Joe S. Mymryk
Software Mentions: 2
Published: over 4 years ago

10.1038/s42003-021-01944-2

Deletion of LBR N-terminal domains recapitulates Pelger-Huet anomaly phenotypes in mouse without disrupting X chromosome inactivation
Cited by: 4
Author(s): Alexander N. Young, Emerald Perlas, Nerea Ruiz-Blanes, Andreas Hierholzer, Nicola Pomella, Belén Martı́n-Martı́n, Alessandra Liverziani, Joanna W. Jachowicz, Thomas Giannakouŕos, Andrea Cerase
Software Mentions: 2
Published: over 3 years ago

10.3390/v12030311

Suppression of a Subset of Interferon-Induced Genes by Human Papillomavirus Type 16 E7 via a Cyclin Dependent Kinase 8-Dependent Mechanism
Cited by: 5
Author(s): Sadie Rice, Seong‐Man Kim, Cynthia Rodríguez, William K. Songock, G. Raikhy, Rebecca Lopez, Lauren A. Henderson, Arjun Yusufji, Jason M. Bodily
Software Mentions: 2
Published: over 4 years ago

10.1038/s42003-021-02321-9

Androgen receptor variant shows heterogeneous expression in prostate cancer according to differentiation stage
Cited by: 3
Author(s): Ada Gjyrezi, Giuseppe Galletti, Jiaren Zhang, Daniel Worroll, Michael Sigouros, Seaho Kim, Victoria Cooley, Karla V. Ballman, Allyson J. Ocean, Manish A. Shah, Joseph M. Scandura, Andrea Sboner, David M. Nanus, Himisha Beltran, Scott T. Tagawa, Paraskevi Giannakakou
Software Mentions: 2
Published: over 3 years ago

10.7554/eLife.49551

Ribosome biogenesis restricts innate immune responses to virus infection and DNA
Cited by: 49
Author(s): Christopher Bianco, Ian Mohr
Software Mentions: 2
Published: almost 5 years ago

10.1038/s42003-020-01527-7

Functional annotation of genetic associations by transcriptome-wide association analysis provides insights into neutrophil development regulation
Cited by: 1
Author(s): Yao Yao, Jia Yang, Qian Qin, Chao Tang, Zhidan Li, Li Chen, Kailong Li, Chunyan Ren, Lu Chen, Shuquan Rao
Software Mentions: 2
Published: almost 4 years ago

10.3390/v10060308

The E. coli Global Regulator DksA Reduces Transcription during T4 Infection
Cited by: 9
Author(s): Jennifer Patterson-West, Tamara D. James, Llorenç Fernández-Coll, James R. Iben, Kyung Ho Moon, Leslie Knipling, Michael Cashel, Deborah M. Hinton
Software Mentions: 2
Published: over 6 years ago

10.1038/s42003-020-01359-5

Cancer-associated hypersialylated MUC1 drives the differentiation of human monocytes into macrophages with a pathogenic phenotype
Cited by: 29
Author(s): Richard Beatson, Rosalind Graham, Fabio Grundland-Freile, Domenico Cozzetto, Shichina Kannambath, Ester Pfeifer, Natalie Woodman, Julie Owen, Rosamond Nuamah, Ulla Mandel, Sarah Pinder, Cheryl Gillett, Thomas Noll, Ihssane Bouybayoune, Joyce Taylor‐Papadimitriou, Joy Burchell
Software Mentions: 2
Published: about 4 years ago

10.1038/s42003-020-0805-8

Variant phasing and haplotypic expression from long-read sequencing in maize
Cited by: 16
Author(s): Bo Wang, Elizabeth Tseng, Primo Baybayan, Kevin Eng, Michael Regulski, Yinping Jiao, Liya Wang, Andrew Olson, Kapeel Chougule, Peter Van Buren, Doreen Ware
Software Mentions: 2
Published: almost 5 years ago

10.1080/21505594.2021.1950268

Importance of twitching and surface-associated motility in the virulence of Acinetobacter baumannii
Cited by: 12
Author(s): Jordi Corral, María Pérez-Varela, Miquel Sánchez-Osuna, Pilar Cortés, Jordi Barbé, Jesús Aranda
Software Mentions: 2
Published: about 3 years ago

10.1038/s42003-021-01940-6

INPP4B protects from metabolic syndrome and associated disorders
Cited by: 7
Author(s): Manqi Zhang, Yasemin Ceyhan, Elena M. Kaftanovskaya, Judy L. Vasquez, Jean Vacher, Filip K. Knop, Lubov Nathanson, Alexander I. Agoulnik, Michael Ittmann, Irina U. Agoulnik
Software Mentions: 2
Published: over 3 years ago

10.1080/21505594.2021.1927609

Adaptation of the emerging pathogenic yeast Candida auris to high caspofungin concentrations correlates with cell wall changes
Cited by: 12
Author(s): Violeta Lara-Aguilar, Cristina Rueda, Irene García-Barbazán, Sarai Varona, Sara Monzón, Pilar Jiménez, Isabel Cuesta, Ángel Zaballos, Óscar Zaragoza
Software Mentions: 2
Published: over 3 years ago

10.1038/s42003-021-01901-z

Inside-out chicken enteroids with leukocyte component as a model to study host–pathogen interactions
Cited by: 38
Author(s): Tessa Nash, Katrina M. Morris, Neil A. Mabbott, Lonneke Vervelde
Software Mentions: 2
Published: over 3 years ago

10.1007/s00277-020-03953-3

Implementation of RNA sequencing and array CGH in the diagnostic workflow of the AIEOP-BFM ALL 2017 trial on acute lymphoblastic leukemia
Cited by: 18
Author(s): Maximilian Schieck, Jana Lentes, Kathrin Thomay, Winfried Hofmann, Yvonne Lisa Behrens, Maike Hagedorn, Juliane Ebersold, Colin Davenport, Grazia Fazio, Anja Möricke, Swantje Buchmann, Julia Alten, Gunnar Cario, Martin Schrappe, Anke Bergmann, Martin Stanulla, Doris Steinemann, Brigitte Schlegelberger, Giovanni Cazzaniga, Gudrun Göhring
Software Mentions: 2
Published: almost 5 years ago

10.7554/eLife.54782

Epigenetic regulation of Wnt7b expression by the cis-acting long noncoding RNA Lnc-Rewind in muscle stem cells
Cited by: 17
Author(s): Andrea Cipriano, Martina Macino, Giulia Buonaiuto, Tiziana Santini, Beatrice Biferali, Giovanna Peruzzi, Alessio Colantoni, Chiara Mozzetta, Monica Ballarino
Software Mentions: 2
Published: almost 4 years ago

10.1186/s13567-020-00773-1

Comprehensive mapping of the cell response to E. coli infection in porcine intestinal epithelial cells pretreated with exopolysaccharide derived from Lactobacillus reuteri
Cited by: 10
Author(s): Ľudmila Tkáčiková, Evelína Mochnáčová, Punit Tyagi, Zuzana Kiššová, Mangesh Bhide
Software Mentions: 2
Published: over 4 years ago

10.1186/s40163-020-00116-7

A systematic review on spatial crime forecasting
Cited by: 39
Author(s): Ourania Kounadi, Alina Ristea, Adelson de Araujo, Michael Leitner
Software Mentions: 2
Published: over 4 years ago

10.1186/s13054-019-2670-8

A longitudinal study highlights shared aspects of the transcriptomic response to cardiogenic and septic shock
Cited by: 17
Author(s): Daniele Braga, Matteo Barcella, Antoine Herpain, Federico Aletti, Erik B. Kistler, Bernardo Bollen Pinto, Karim Bendjelid, Cristina Barlassina
Software Mentions: 2
Published: almost 5 years ago

10.1186/s13054-018-2242-3

Identification of a transcriptome profile associated with improvement of organ function in septic shock patients after early supportive therapy
Cited by: 14
Author(s): Matteo Barcella, Bernardo Bollen Pinto, Daniele Braga, Francesca D’Avila, Federico Tagliaferri, Marie-Angélique Cazalis, Guillaume Monneret, Antoine Herpain, Karim Bendjelid, Cristina Barlassina
Software Mentions: 2
Published: about 6 years ago

10.1016/j.cub.2017.12.044

Nanoscale Dynamism of Actin Enables Secretory Function in Cytolytic Cells
Cited by: 89
Author(s): Alexandre F. Carisey, Emily M. Mace, Mezida B. Saeed, Daniel M. Davis, Jordan S. Orange
Software Mentions: 2
Published: almost 7 years ago

10.1016/j.cub.2021.01.005

Hippocampal place cells encode global location but not connectivity in a complex space
Cited by: 26
Author(s): Éléonore Duvelle, Roddy M. Grieves, Anyi Liu, Selim Jedidi-Ayoub, Joanna Holeniewska, Adam Harris, Nils T. Nyberg, Francesco Rigoli, Julie Lefort, Kate J. Jeffery, Christopher Summerfield, Giovanni Pezzulo, Hugo J. Spiers
Software Mentions: 2
Published: over 3 years ago

10.1038/s41385-019-0231-8

NK cell recruitment limits tissue damage during an enteric helminth infection
Cited by: 20
Author(s): Maria E. Gentile, Yue Li, Amicha Robertson, Kathleen Shah, Ghislaine Fontés, Eva Kaufmann, Barbara Polese, Nargis Khan, Marc Parisien, Hans Markus Münter, Judith N. Mandl, Luda Diatchenko, Maziar Divangahi, Irah L. King
Software Mentions: 2
Published: over 4 years ago

10.1016/j.cub.2017.12.041

Maternal Inheritance of a Single Somatic Animal Cell Displayed by the Bacteriocyte in the Whitefly Bemisia tabaci
Cited by: 52
Author(s): Jing Luan, Xuepeng Sun, Zhangjun Fei, Angela E. Douglas
Software Mentions: 2
Published: almost 7 years ago

10.1016/j.cub.2020.12.041

Biomechanics of the human thumb and the evolution of dexterity
Cited by: 30
Author(s): Fotios Alexandros Karakostis, Daniel F. B. Haeufle, Ioanna Anastopoulou, Konstantinos Moraitis, Günter Hotz, Vangelis Tourloukis, Katerina Harvati
Software Mentions: 2
Published: over 3 years ago

10.3389/fnagi.2018.00208

The Aβ Containing Brain Extracts Having Different Effects in Alzheimer’s Disease Transgenic Caenorhabditis elegans and Mice
Cited by: 1
Author(s): Yufang Yang, Mo Wang, Ping Yang, Zishan Wang, Li Huang, Jing Xu, Wei Wang, Mei Yu, Liping Bu, Jian Fei, Fang Huang
Software Mentions: 2
Published: over 6 years ago

10.3389/fnbeh.2020.00160

Blast-Related Mild TBI Alters Anxiety-Like Behavior and Transcriptional Signatures in the Rat Amygdala
Cited by: 19
Author(s): Jennifer Blaze, Inbae Choi, Zhaoyu Wang, Michelle Umali, Natalia Mendelev, Anna E. Tschiffely, Stephen T. Ahlers, Gregory A. Elder, Yongchao Ge, Fatemeh Haghighi
Software Mentions: 2
Published: about 4 years ago

10.3390/ijms22147583

Comprehensive Genomic and Transcriptomic Analysis of Three Synchronous Primary Tumours and a Recurrence from a Head and Neck Cancer Patient
Cited by: 3
Author(s): Luisa Bresadola, D. F. Weber, Christoph Ritzel, Martin Löwer, Valesca Bukur, Özlem Akilli-Öztürk, Julia Powers Becker, Hisham Mehanna, Barbara Schrörs, Fulvia Vascotto, Uğur Şahin, Anthony Kong
Software Mentions: 2
Published: over 3 years ago

10.3389/fbioe.2020.01021

GeTallele: A Method for Analysis of DNA and RNA Allele Frequency Distributions
Cited by: 2
Author(s): Piotr Słowiński, Muzi Li, Paula Restrepo, Nawaf Alomran, Liam F. Spurr, C. Ryan Miller, Krasimira Tsaneva-Atanasova, Anélia Horvath
Software Mentions: 2
Published: about 4 years ago

10.3389/fcvm.2021.662870

Acetazolamide Improves Right Ventricular Function and Metabolic Gene Dysregulation in Experimental Pulmonary Arterial Hypertension
Cited by: 4
Author(s): Fotios Spyropoulos, Zoe Michael, Benjamin Finander, Sally H. Vitali, Kosmas Kosmas, Panagiotis Zymaris, Brian T. Kalish, Stella Kourembanas, Helen Christou
Software Mentions: 2
Published: over 3 years ago

10.1186/s12974-017-0915-5

MHC class II expression and potential antigen-presenting cells in the retina during experimental autoimmune uveitis
Cited by: 42
Author(s): Deborah A. Lipski, Rémi Dewispelaere, Vincent Foucart, Laure Caspers, Matthieu Defrance, Catherine Bruyns, François Willermain
Software Mentions: 2
Published: over 7 years ago

10.3389/fcell.2020.608112

Dynamic Polarization of Rab11a Modulates Crb2a Localization and Impacts Signaling to Regulate Retinal Neurogenesis
Cited by: 6
Author(s): Brian S. Clark, Joel B. Miesfeld, Michael A. Flinn, Ross F Collery, Brian A. Link
Software Mentions: 2
Published: almost 4 years ago

10.15252/msb.20188266

Single‐cell <scp>mRNA</scp> profiling reveals the hierarchical response of mi <scp>RNA</scp> targets to mi <scp>RNA</scp> induction
Cited by: 20
Author(s): Andrzej J. Rzepiela, Souvik Ghosh, Jérémie Breda, Arnau Viña-Vilaseca, Afzal Pasha Syed, Andreas J. Gruber, Katja Eschbach, Christian Beisel, Erik van Nimwegen, Mihaela Zavolan
Software Mentions: 2
Published: over 6 years ago

10.15252/msb.20209864

Precise transcriptional control of cellular quiescence by BRAVO/WOX5 complex in Arabidopsis roots
Cited by: 8
Author(s): Isabel Betegón‐Putze, Josep Mercadal, Nadja Bosch, Ainoa Planas-Riverola, María Mar Marquès-Bueno, Josep Vilarrasa-Blasi, David Frigola, Rebecca C. Burkart, Consuelo Martı́nez, Ana Conesa, Rosangela Sozzani, Yvonne Stahl, Salomé Prat, Marta Ibañes, Ana I. Caño‐Delgado
Software Mentions: 2
Published: over 3 years ago

10.3389/fcell.2021.711792

Deficiency of Intellectual Disability-Related Gene Brpf1 Attenuated Hippocampal Excitatory Synaptic Transmission and Impaired Spatial Learning and Memory Ability
Cited by: 5
Author(s): Weiwei Xian, Jingli Cao, Xinlu Yuan, Guoxiang Wang, Qiuyan Jin, Hang Zhang, Guomin Zhou, Linya You
Software Mentions: 2
Published: over 3 years ago

10.3389/fcell.2021.635307

RAMP2-AS1 Regulates Endothelial Homeostasis and Aging
Cited by: 9
Author(s): Chih Hung Lai, Aleysha T. Chen, Alan R. Burns, Kiran Sriram, Yingjun Luo, Xiaofang Tang, Sergio Branciamore, Denis O’Meally, Szu Ling Chang, Po Hsun Huang, John Y.‐J. Shyy, Shu Chien, Russell C. Rockne, Zhen Bouman Chen
Software Mentions: 2
Published: almost 4 years ago

10.3389/fcell.2021.629430

DAND5 Inactivation Enhances Cardiac Differentiation in Mouse Embryonic Stem Cells
Cited by: 1
Author(s): José Manuel Inácio, João von Gilsa Lopes, Ana Mafalda Silva, Fernando Cristo, Sara Marques, Matthias E. Futschik, José António Belo
Software Mentions: 2
Published: over 3 years ago

10.1038/s41380-020-00994-y

Serotonin receptor 4 in the hippocampus modulates mood and anxiety
Cited by: 29
Author(s): Remzi Karayol, Lucian Medrihan, Jennifer L. Warner-Schmidt, Benjamin W. Fait, Meghana N. Rao, E Hölzner, Paul Greengard, Nathaniel Heintz, Eric F. Schmidt
Software Mentions: 2
Published: almost 4 years ago

10.1038/s41380-019-0563-5

Discovery of autism/intellectual disability somatic mutations in Alzheimer's brains: mutated ADNP cytoskeletal impairments and repair as a case study
Cited by: 55
Author(s): Yanina Ivashko-Pachima, Adva Hadar, Iris Grigg, Vlasta Korenková, Oxana Kapitansky, Gidon Karmon, Michael Gershovits, CL Sayas, R. Frank Kooy, Johannes Attems, David Genevieve, Illana Gozes
Software Mentions: 2
Published: about 5 years ago

10.7554/eLife.21592

Mitochondrial respiratory gene expression is suppressed in many cancers
Cited by: 96
Author(s): Ed Reznik, Qingguo Wang, Konnor La, Nikolaus Schultz, Chris Sander
Software Mentions: 2
Published: almost 8 years ago

10.7554/eLife.34114

Transcriptomic analyses reveal rhythmic and CLOCK-driven pathways in human skeletal muscle
Cited by: 81
Author(s): Laurent Perrin, Ursula Loizides‐Mangold, Stéphanie Chanon, Cédric Gobet, Nicolas Hulo, Laura Isenegger, Benjamin D. Weger, Eugenia Migliavacca, Aline Charpagne, James A. Betts, Jean–Philippe Walhin, Iain Templeman, Keith Stokes, Dylan Thompson, Kostas Tsintzas, M. Robert, Cédric Howald, Howard Riezman, Jérôme N. Feige, Leonidas G. Karagounis, Jeanne D. Johnston, Emmanouil T. Dermitzakis, Frédéric Gachon, Étienne Lefai, Charna Dibner
Software Mentions: 2
Published: over 6 years ago

10.3389/fcell.2019.00368

Extracellular Vesicles From Hepatocytes Are Therapeutic for Toxin-Mediated Fibrosis and Gene Expression in the Liver
Cited by: 29
Author(s): Xinlei Li, Ruju Chen, Sherri Kemper, David R. Brigstock
Software Mentions: 2
Published: almost 5 years ago

10.1002/1878-0261.12649

Prolyl 4‐hydroxylase subunit alpha 1 (P4HA1) is a biomarker of poor prognosis in primary melanomas, and its depletion inhibits melanoma cell invasion and disrupts tumor blood vessel walls
Cited by: 11
Author(s): Johanna Eriksson, Vadim Le Joncour, Tiina Jahkola, Susanna Juteau, Pirjo Laakkonen, Olli Saksela, Erkki Hölttä
Software Mentions: 2
Published: almost 5 years ago

10.1002/mnfr.201900999

Anthocyanin‐Biofortified Colored Wheat Prevents High Fat Diet–Induced Alterations in Mice: Nutrigenomics Studies
Cited by: 29
Author(s): Saloni Sharma, Pragyanshu Khare, Ashish Kumar, Venkatesh Chunduri, Aman Kumar, Payal Kapoor, Priyanka Mangal, Kanthi Kiran Kondepudi, Mahendra Bishnoi, Monika Garg
Software Mentions: 2
Published: over 4 years ago

10.3389/fcell.2020.00264

Canonical WNT/β-Catenin Signaling Activated by WNT9b and RSPO2 Cooperation Regulates Facial Morphogenesis in Mice
Cited by: 12
Author(s): Yong-Ri Jin, Xiuzhen Han, Katsuhiko Nishimori, Dan Ben-Avraham, Youn Jeong Oh, Jae Kun Shim, Jong‐Hwan Yoon
Software Mentions: 2
Published: over 4 years ago

10.3389/fcell.2021.677981

RNA Network Interactions During Differentiation of Human Trophoblasts
Cited by: 5
Author(s): Tianjiao Chu, Jean-François Mouillet, Zhishen Cao, Oren Barak, Yi‐Bing Ouyang, Yoel Sadovsky
Software Mentions: 2
Published: over 3 years ago

10.7554/eLife.38389

Importance of miRNA stability and alternative primary miRNA isoforms in gene regulation during Drosophila development
Cited by: 31
Author(s): Liqun Zhou, Mandy Yu Theng Lim, Prameet Kaur, Abil Saj, Diane Bortolamiol-Bécet, Vikneswaran Gopal, Nicholas S. Tolwinski, Greg Tucker‐Kellogg, Katsutomo Okamura
Software Mentions: 2
Published: over 6 years ago

10.1186/s13024-019-0319-3

TREM2 brain transcript-specific studies in AD and TREM2 mutation carriers
Cited by: 56
Author(s): Jorge L. Del‐Aguila, Bruno A. Benitez, Zeran Li, Umber Dube, Kathie A. Mihindukulasuriya, John Budde, Fabiana H.G. Farias, María Victoria Fernández, Laura Ibáñez, Shan Jiang, Richard J. Perrin, Nigel J. Cairns, John C. Morris, Oscar Harari, Carlos Cruchaga
Software Mentions: 2
Published: over 5 years ago

10.1186/s13024-020-00387-3

BIN1 protein isoforms are differentially expressed in astrocytes, neurons, and microglia: neuronal and astrocyte BIN1 are implicated in tau pathology
Cited by: 24
Author(s): Mariko Taga, Vladislav Petyuk, Charles C. White, Graham Marsh, Yiyi Ma, Hans‐Ulrich Klein, Sarah M. Connor, Alexandra Kroshilina, Christina J. Yung, Anthony Khairallah, Marta Olah, Julie A. Schneider, Kyle W. Karhohs, Anne E. Carpenter, Richard M. Ransohoff, David A. Bennett, Andrea Crotti, Elizabeth M. Bradshaw, Philip L. De Jager
Software Mentions: 2
Published: over 4 years ago

10.1186/s13024-017-0210-z

Prevention of C5aR1 signaling delays microglial inflammatory polarization, favors clearance pathways and suppresses cognitive loss
Cited by: 58
Author(s): Michael Hernandez, Shan Jiang, Tracy Cole, Shu Hui Chu, María Isabel Fonseca, Melody J. Fang, Lindsay A. Hohsfield, M.D. Martínez del Valle Torres, Kim N. Green, Rick A. Wetsel, A Mortazavi, Andrea J. Tenner
Software Mentions: 2
Published: about 7 years ago

10.3389/fcell.2021.617281

Insights Into the Role of CircRNAs: Biogenesis, Characterization, Functional, and Clinical Impact in Human Malignancies
Cited by: 45
Author(s): Sabah Nisar, Ajaz A. Bhat, Mayank Singh, Thasni Karedath, Arshi Rizwan, Sheema Hashem, Puneet Bagga, Ravinder Reddy, Farrukh Jamal, Shahab Uddin, Gyan Chand, Davide Bedognetti, Wael El-Rifai, Michael Frenneaux, Muzafar A. Macha, Ikhlak Ahmed, Mohammad Haris
Software Mentions: 2
Published: almost 4 years ago

10.7554/eLife.44057

Dynamic enhancer partitioning instructs activation of a growth-related gene during exit from naïve pluripotency
Cited by: 8
Author(s): Maxim V. C. Greenberg, Aurélie Teissandier, Marius Walter, Daan Noordermeer, Déborah Bourc’his
Software Mentions: 2
Published: over 5 years ago

10.3389/fcell.2021.735684

Molecular Features of Polycystic Ovary Syndrome Revealed by Transcriptome Analysis of Oocytes and Cumulus Cells
Cited by: 18
Author(s): Jie Li, Hạixia Chen, Mo Gou, Chenglei Tian, Huasong Wang, Xiaomin Song, David L. Keefe, Xue Bai, Lin Liu
Software Mentions: 2
Published: about 3 years ago

10.1007/s12035-018-1368-2

Bezafibrate Upregulates Mitochondrial Biogenesis and Influence Neural Differentiation of Human-Induced Pluripotent Stem Cells
Cited by: 23
Author(s): Justyna Augustyniak, Jacek Lenart, Paweł Gaj, Monika Kolanowska, Krystian Jażdżewski, Piotr P. Stępień, Leonora Bużańska
Software Mentions: 2
Published: about 6 years ago

10.3389/fcell.2020.00647

Are Epithelial Ovarian Cancers of the Mesenchymal Subtype Actually Intraperitoneal Metastases to the Ovary?
Cited by: 11
Author(s): Ye Hu, Barbie Taylor‐Harding, Yael Raz, Marcela Haro, María Sol Recouvreux, Enes Taylan, Jenny Lester, Joshua Millstein, Ann E. Walts, Beth Y. Karlan, Sandra Oršulić
Software Mentions: 2
Published: over 4 years ago

10.3389/fcell.2021.644947

An Early Diagnostic Clue for COL18A1- and LAMA1-Associated Diseases: High Myopia With Alopecia Areata in the Cranial Midline
Cited by: 1
Author(s): Panfeng Wang, Xiaoyun Jia, Xueshan Xiao, Shiqiang Li, Yuxi Long, Mengchu Liu, Yongyu Li, Jun Li, Yan Xu, Qingjiong Zhang
Software Mentions: 2
Published: over 3 years ago

10.3389/fcell.2021.665409

Prolonged Environmental Enrichment Promotes Developmental Myelination
Cited by: 12
Author(s): Evan Z. Goldstein, Vera Pertsovskaya, Thomas A. Forbes, Jeffrey L. Dupree, Vittorio Gallo
Software Mentions: 2
Published: over 3 years ago

10.1016/j.molmet.2020.101026

STAT5 is required for lipid breakdown and beta-adrenergic responsiveness of brown adipose tissue
Cited by: 15
Author(s): Doris Kaltenecker, Katrin Spirk, Frank Ruge, Florian Grebien, Marco Herling, Anne Rupprecht, Lukas Kenner, Elena E. Pohl, Kristina M. Mueller, Richard Moriggl
Software Mentions: 2
Published: about 4 years ago

10.1016/j.molmet.2019.11.004

The core clock gene, Bmal1, and its downstream target, the SNARE regulatory protein secretagogin, are necessary for circadian secretion of glucagon-like peptide-1
Cited by: 32
Author(s): Andrew D. Biancolin, Alexandre Martchenko, Emilia Mitova, Patrick Gurges, Everan Michalchyshyn, J. P. Chalmers, Alessandro Doria, Josyf C. Mychaleckyj, Alice E. Adriaenssens, Frank Reimann, Fiona M. Gribble, Manuel Gil‐Lozano, Brian Cox, Patricia L. Brubaker
Software Mentions: 2
Published: almost 5 years ago

10.1016/j.molmet.2020.101094

Ozone-induced fetal growth restriction in rats is associated with sexually dimorphic placental and fetal metabolic adaptation
Cited by: 9
Author(s): Colette N. Miller, Janice A. Dye, Andres R. Henriquez, Erica Stewart, Katelyn S. Lavrich, Gleta Carswell, Hongzu Ren, Danielle L. Freeborn, Samantha J. Snow, Mette C. Schladweiler, Judy H. Richards, Prasada Rao S. Kodavanti, Anna Fisher, Brian N. Chorley, Urmila P. Kodavanti
Software Mentions: 2
Published: almost 4 years ago

10.3389/fcell.2020.580019

Role of Phosphorylated Gonadotropin-Regulated Testicular RNA Helicase (GRTH/DDX25) in the Regulation of Germ Cell Specific mRNAs in Chromatoid Bodies During Spermatogenesis
Cited by: 5
Author(s): Ramaswamy Anbazhagan, Raghuveer Kavarthapu, Steven L. Coon, Maria L. Dufau
Software Mentions: 2
Published: almost 4 years ago

10.3389/fcell.2019.00252

NLRP2 Regulates Proinflammatory and Antiapoptotic Responses in Proximal Tubular Epithelial Cells
Cited by: 26
Author(s): Marianna Nicoletta Rossi, Antonia Pascarella, Valerio Licursi, Ivan Caiello, Anna Taranta, Laura Rita Rega, Elena Levtchenko, Francesco Emma, Fabrizio Benedetti, Giusi Prencipe
Software Mentions: 2
Published: about 5 years ago

10.3389/fcell.2020.00398

Cathepsin S and Protease-Activated Receptor-2 Drive Alloimmunity and Immune Regulation in Kidney Allograft Rejection
Cited by: 9
Author(s): Yutian Lei, Benjamin Ehle, Sanjeev Kumar, Susanne Müller, Solange Moll, Andrew F. Malone, Benjamin D. Humphreys, Joachim Andrassy, Hans Joachim Anders
Software Mentions: 2
Published: over 4 years ago

10.3389/fcell.2021.656867

High-Yield Human Induced Pluripotent Stem Cell-Derived Monocytes and Macrophages Are Functionally Comparable With Primary Cells
Cited by: 10
Author(s): Di Cui, Alexandra Franz, Sophie Fillon, Linda Jannetti, Timo Isambert, Katrin Fundel‐Clemens, Heinrich J. Huber, Coralie Viollet, Alexander Ghanem, Akira Niwa, Bernd Weigle, Stefan Pflanz
Software Mentions: 2
Published: over 3 years ago

10.1186/s10020-021-00362-8

An mRNA assay system demonstrates proteasomal-specific degradation contributes to cardiomyopathic phospholamban null mutation
Cited by: 1
Author(s): Eduarde Rohner, Nevin Witman, Jesper Sohlmér, Erwin De Genst, William E. Louch, Makoto Sahara, Kenneth R. Chien
Software Mentions: 2
Published: about 3 years ago

10.3389/fcimb.2019.00165

Development of a Novel ex vivo Nasal Epithelial Cell Model Supporting Colonization With Human Nasal Microbiota
Cited by: 15
Author(s): Derald D. Charles, James R. Fisher, Sarah M. Hoskinson, Audrie A. Medina-Colorado, Yi Shen, Mohamad R. Chaaban, Steven G. Widen, Tonyia Eaves-Pyles, Carrie Maxwell, Aaron L. Miller, Vsevolod L. Popov, Richard B. Pyles
Software Mentions: 2
Published: over 5 years ago

10.1186/s10020-021-00370-8

MicroRNA regulation of the proliferation and apoptosis of Leydig cells in diabetes
Cited by: 11
Author(s): Li Hu, Shaochai Wei, Yuqi Wu, Shulin Li, Ping Zhu, Xiangwei Wang
Software Mentions: 2
Published: about 3 years ago

10.3389/fcimb.2020.00218

RNA-Seq Analyses Reveal That Endothelial Activation and Fibrosis Are Induced Early and Progressively by Besnoitia besnoiti Host Cell Invasion and Proliferation
Cited by: 7
Author(s): Alejandro Jiménez-Meléndez, Chandra Ramakrishnan, Adrian Hehl, Giancarlo Russo, Gema Álvarez‐García
Software Mentions: 2
Published: over 4 years ago

10.1016/j.ymgmr.2019.100531

Effectiveness of integrated interpretation of exome and corresponding transcriptome data for detecting splicing variants of genes associated with autosomal recessive disorders
Cited by: 9
Author(s): Mamiko Yamada, Hisato Suzuki, Yuichi Shiraishi, Kenjiro Kosaki
Software Mentions: 2
Published: almost 5 years ago

10.3390/molecules26102836

The RNA-Binding Protein HuD Regulates Alternative Splicing and Alternative Polyadenylation in the Mouse Neocortex
Cited by: 9
Author(s): Rebecca M Sena, Jeffery L. Twiss, Amy S. Gardiner, Michela Dell’Orco, David N. Linsenbardt, Nora I. Perrone‐Bizzozero
Software Mentions: 2
Published: over 3 years ago

10.7554/eLife.44667

Astrocyte morphogenesis is dependent on BDNF signaling via astrocytic TrkB.T1
Cited by: 92
Author(s): Leanne M. Holt, Raymundo Hernandez, Natasha L. Pacheco, Beatriz Torres Ceja, Muhannah Hossain, Michelle L. Olsen
Software Mentions: 2
Published: over 5 years ago

10.3389/fcimb.2017.00125

In vitro Multi-Species Biofilms of Methicillin-Resistant Staphylococcus aureus and Pseudomonas aeruginosa and Their Host Interaction during In vivo Colonization of an Otitis Media Rat Model
Cited by: 40
Author(s): Mukesh Yadav, Sung Won Chae, Yoon Young Go, Gi Jung Im, Jae Jun Song
Software Mentions: 2
Published: over 7 years ago

10.1186/s12974-016-0644-1

Transcriptome sequencing reveals that LPS-triggered transcriptional responses in established microglia BV2 cell lines are poorly representative of primary microglia
Cited by: 91
Author(s): Amitabh Das, Sun Hwa Kim, Sarder Arifuzzaman, Tae-Ho Yoon, Jin Choul Chai, Young Seek Lee, Kyoung Sun Park, Kyoung Hwa Jung, Young Gyu Chai
Software Mentions: 2
Published: over 8 years ago

10.3389/fncel.2018.00445

The Inner Ear Heat Shock Transcriptional Signature Identifies Compounds That Protect Against Aminoglycoside Ototoxicity
Cited by: 14
Author(s): Matthew Ryals, Robert J. Morell, Daniel Martin, Erich T. Boger, Patricia Wu, David W. Raible, Lisa L. Cunningham
Software Mentions: 2
Published: about 6 years ago

10.7554/eLife.16955

mRNA poly(A)-tail changes specified by deadenylation broadly reshape translation in Drosophila oocytes and early embryos
Cited by: 125
Author(s): Stephen W. Eichhorn, Alexander O. Subtelny, Iva Kronja, Jamie C. Kwasnieski, Terry L. Orr‐Weaver, David P. Bartel
Software Mentions: 2
Published: over 8 years ago

10.1093/aob/mcy237

Arabidopsis species deploy distinct strategies to cope with drought stress
Cited by: 22
Author(s): Maroua Bouzid, Fei He, Gregor Schmitz, Rainer E. Häusler, Andreas Weber, Tabea Mettler‐Altmann, Juliette de Meaux
Software Mentions: 2
Published: almost 6 years ago

10.3389/fncel.2021.660732

RNA-Seq Dataset From Isolated Leukocytes Following Spontaneous Intracerebral Hemorrhage in Zebrafish Larvae
Cited by: 0
Author(s): Siobhan Crilly, James W. Cooper, Lauren Bradford, Ian Prise, Siddharth Krishnan, Paul R. Kasher
Software Mentions: 2
Published: over 3 years ago

10.3389/fncel.2017.00033

Huntingtin Is Required for Neural But Not Cardiac/Pancreatic Progenitor Differentiation of Mouse Embryonic Stem Cells In vitro
Cited by: 4
Author(s): Man Shan Yu, Naoko Tanese
Software Mentions: 2
Published: almost 8 years ago

10.1016/j.mce.2021.111220

AKR1C2 and AKR1C3 expression in adipose tissue: Association with body fat distribution and regulatory variants
Cited by: 9
Author(s): Giada Ostinelli, Jinchu Vijay, Marie‐Claude Vohl, Elin Grundberg, André Tchernof
Software Mentions: 2
Published: over 3 years ago

10.1016/j.molcel.2021.02.021

Structural basis for conformational equilibrium of the catalytic spliceosome
Cited by: 21
Author(s): Max E. Wilkinson, Sebastian M. Fica, Wojciech P. Galej, Kiyoshi Nagai
Software Mentions: 2
Published: over 3 years ago

10.3389/fncel.2019.00310

Comprehensive Evaluation of White Matter Damage and Neuron Death and Whole-Transcriptome Analysis of Rats With Chronic Cerebral Hypoperfusion
Cited by: 9
Author(s): Wenxian Li, Di Wei, Jianye Liang, Xiaomei Xie, Kangping Song
Software Mentions: 2
Published: over 5 years ago

10.3389/fevo.2019.00085

Alternative Transcription at Venom Genes and Its Role as a Complementary Mechanism for the Generation of Venom Complexity in the Common House Spider
Cited by: 13
Author(s): Robert A. Haney, Taylor Matte, FitzAnthony S. Forsyth, Jessica E. Garb
Software Mentions: 2
Published: over 5 years ago

10.3389/fendo.2018.00034

Regulatory Architecture of the LβT2 Gonadotrope Cell Underlying the Response to Gonadotropin-Releasing Hormone
Cited by: 14
Author(s): Frederique Ruf-Zamojski, Miguel Fribourg, Yongchao Ge, Venugopalan D. Nair, Hanna Pinças, Elena Zaslavsky, German Nudelman, Stephanie Tuminello, Hideo Watanabe, Judith L Turgeon, Stuart C. Sealfon
Software Mentions: 2
Published: almost 7 years ago

10.1016/j.molcel.2019.07.037

Elongation Factor TFIIS Prevents Transcription Stress and R-Loop Accumulation to Maintain Genome Stability
Cited by: 71
Author(s): Diana Zatreanu, Zhong Chao Han, Richard Mitter, Emanuela Tumini, Hannah Williams, Lea H. Gregersen, A. Barbara Dirac-Svejstrup, Stefania Roma, Aengus Stewart, Andrés Aguilera, Jesper Q. Svejstrup
Software Mentions: 2
Published: about 5 years ago

10.3389/fendo.2021.671724

Attenuated Induction of the Unfolded Protein Response in Adult Human Primary Astrocytes in Response to Recurrent Low Glucose
Cited by: 3
Author(s): Paul G. Weightman Potter, Sam Washer, Aaron R. Jeffries, Janet E. Holley, N. J. Gutowski, Emma Dempster, Craig Beall
Software Mentions: 2
Published: over 3 years ago

10.1016/j.molcel.2020.10.005

Activation of Clustered IFNγ Target Genes Drives Cohesin-Controlled Transcriptional Memory
Cited by: 27
Author(s): Wojciech Siwek, Sahar S. H. Tehrani, João F. Mata, Lars Jansen
Software Mentions: 2
Published: about 4 years ago

10.3389/fendo.2020.00238

Urinary Sediment Transcriptomic and Longitudinal Data to Investigate Renal Function Decline in Type 1 Diabetes
Cited by: 5
Author(s): Maria Beatriz Monteiro, Tatiana Souza Pelaes, Daniele Pereira Santos‐Bezerra, Karina Thieme, Antônio M. Lerário, Sueli Mieko Oba-Shinjo, Ubiratan Fabres Machado, Marisa Passarelli, Suely Kazue Nagahashi Marie, Maria Lúcia Corrêa-Giannella
Software Mentions: 2
Published: over 4 years ago

10.3389/fendo.2020.558344

Transcriptome Sequencing Analysis of Peripheral Blood of Type 2 Diabetes Mellitus Patients With Thirst and Fatigue
Cited by: 6
Author(s): Bohan Lv, Xueli Bao, Ping Li, Juan Lian, Yanxiang Wu, Tian An, Jing Zhang, Xiuyan Yang, Tingye Wang, Jiajian Zhu, Yuanyuan Hu, Guiyan Jiang, Gao S
Software Mentions: 2
Published: about 4 years ago

10.3389/fgene.2020.562937

Transcriptomic Analysis Reveals Important Roles of Lignin and Flavonoid Biosynthetic Pathways in Rice Thermotolerance During Reproductive Stage
Cited by: 19
Author(s): Zhenzhen Cai, Fengyu He, Xin Feng, Tom Liang, Hongwei Wang, Shuangcheng Ding, Xiaohai Tian
Software Mentions: 2
Published: about 4 years ago

10.1186/s12943-018-0932-8

RNA-Seq profiling of circular RNAs in human colorectal Cancer liver metastasis and the potential biomarkers
Cited by: 130
Author(s): Hanchen Xu, Chunyan Wang, Haiyan Song, Yangxian Xu, Guang Ji
Software Mentions: 2
Published: almost 6 years ago

10.3389/fgene.2019.01175

Conjoint Analysis of SMRT- and Illumina-Based RNA-Sequencing Data of Fenneropenaeus chinensis Provides Insight Into Sex-Biased Expression Genes Involved in Sexual Dimorphism
Cited by: 5
Author(s): Qiong Wang, HE Ya, Jian Li
Software Mentions: 2
Published: about 5 years ago

10.3389/fgene.2021.709937

SAP30 Gene Is a Probable Regulator of Muscle Hypertrophy in Chickens
Cited by: 1
Author(s): Bruna Petry, Gabriel Costa Monteiro Moreira, Aline Gonçalves Lio Copola, Marcela Maria de Souza, Fernanda Cristina da Veiga, Érika Cristina Jorge, J. de O. Peixoto, Mônica Corrêa Ledur, James E. Koltes, Luiz Lehmann Coutinho
Software Mentions: 2
Published: about 3 years ago

10.1186/s12943-021-01366-y

Novel induction of CD40 expression by tumor cells with RAS/RAF/PI3K pathway inhibition augments response to checkpoint blockade
Cited by: 18
Author(s): Chi Yan, Nabil Saleh, Jinming Yang, Caroline A. Nebhan, Anna E. Vilgelm, E. Premkumar Reddy, Joseph T. Roland, Douglas B. Johnson, Sheau-Chiann Chen, Rebecca L. Shattuck-Brandt, Gregory D. Ayers, Ann Richmond
Software Mentions: 2
Published: over 3 years ago

10.1186/s12943-019-1105-0

LncRNA LINRIS stabilizes IGF2BP2 and promotes the aerobic glycolysis in colorectal cancer
Cited by: 285
Author(s): Yun Wang, Jia Liu, Qi Wu, Ying Jin, De Shen Wang, Yan Xing Chen, Jia Liu, Xiao-Jing Luo, Meng Qi, Heng Ying Pu, Ying Nan Wang, Pei Hu, Zexian Liu, Zhao Lei Zeng, Qi Zhao, Rong Deng, Xiao Feng Zhu, Huai-Qiang Ju, Rui‐Hua Xu
Software Mentions: 2
Published: almost 5 years ago

Projects: cran: STAR

Papers Mentioning STAR 5,759