Ecosyste.ms: Papers

10.7554/eLife.16955

mRNA poly(A)-tail changes specified by deadenylation broadly reshape translation in Drosophila oocytes and early embryos
Cited by: 125
Author(s): Stephen W. Eichhorn, Alexander O. Subtelny, Iva Kronja, Jamie C. Kwasnieski, Terry L. Orr‐Weaver, David P. Bartel
Software Mentions: 2
Published: over 8 years ago

10.7554/eLife.47870

Altered gating of Kv1.4 in the nucleus accumbens suppresses motivation for reward
Cited by: 7
Author(s): Bernadette O’Donovan, Adewale Adeluyi, E. L. Anderson, Robert D. Cole, Jill Turner, Pavel I. Ortinski
Software Mentions: 2
Published: about 5 years ago

10.7554/eLife.25637

RNA-dependent chromatin association of transcription elongation factors and Pol II CTD kinases
Cited by: 49
Author(s): Sofia Battaglia, Michael Lidschreiber, Carlo Baejen, Phillipp Torkler, Seychelle M. Vos, Patrick Cramer
Software Mentions: 2
Published: over 7 years ago

10.7554/eLife.63092

Subcellular sequencing of single neurons reveals the dendritic transcriptome of GABAergic interneurons
Cited by: 42
Author(s): Julio Pérez, Susanne tom Dieck, Beatriz Alvarez‐Castelao, Georgi Tushev, I.C.W. Chan, Erin M. Schuman
Software Mentions: 2
Published: almost 4 years ago

10.7554/eLife.53159

FoxO suppresses endoplasmic reticulum stress to inhibit growth of Tsc1-deficient tissues under nutrient restriction
Cited by: 4
Author(s): Avantika Gupta, Hugo Stocker
Software Mentions: 2
Published: over 4 years ago

10.7554/eLife.42434

Distinct mesoderm migration phenotypes in extra-embryonic and embryonic regions of the early mouse embryo
Cited by: 58
Author(s): Bechara Saykali, Navrita Mathiah, Wallis Nahaboo, Marie-Lucie Racu, Latifa Hammou, Matthieu Defrance, Isabelle Migeotte
Software Mentions: 2
Published: over 5 years ago

10.7554/eLife.64611

Dichloroacetate reverses sepsis-induced hepatic metabolic dysfunction
Cited by: 25
Author(s): Rabina Mainali, Manal Zabalawi, David Long, Nancy L. Buechler, Ellen E. Quillen, Chia-Chi Chuang Key, Xuewei Zhu, John S. Parks, Cristina M. Furdui, Peter W. Stacpoole, Jennifer Martinez, Charles E. McCall, Matthew Quinn
Software Mentions: 2
Published: almost 4 years ago

10.7554/eLife.30649

FoxP2 isoforms delineate spatiotemporal transcriptional networks for vocal learning in the zebra finch
Cited by: 18
Author(s): Zachary Daniel Burkett, Nancy F. Day, Todd Kimball, Caitlin M. Aamodt, Jonathan B. Heston, Austin T. Hilliard, Xinshu Xiao, Stephanie A. White
Software Mentions: 2
Published: almost 7 years ago

10.7554/eLife.06205

In vivo targeting of de novo DNA methylation by histone modifications in yeast and mouse
Cited by: 142
Author(s): Marco Morselli, William A. Pastor, Barbara Montanini, Kevin Nee, Roberto Ferrari, Kai Fu, Giancarlo Bonora, Liudmilla Rubbi, Amander T. Clark, Simone Ottonello, Steven E. Jacobsen, Matteo Pellegrini
Software Mentions: 2
Published: over 9 years ago

10.7554/eLife.33292

Nonsense mRNA suppression via nonstop decay
Cited by: 42
Author(s): Joshua A. Arribere, Andrew Fire
Software Mentions: 2
Published: almost 7 years ago

10.7554/eLife.59711

High neural activity accelerates the decline of cognitive plasticity with age in Caenorhabditis elegans
Cited by: 11
Author(s): Qiaochu Li, Daniel-Cosmin Marcu, Ottavia Palazzo, Frances Turner, Declan King, Tara L. Spires‐Jones, Melanie I. Stefan, Karl Emanuel Busch
Software Mentions: 2
Published: about 4 years ago

10.7554/eLife.52951

Cell type composition and circuit organization of clonally related excitatory neurons in the juvenile mouse neocortex
Cited by: 32
Author(s): Cathryn R. Cadwell, Federico Scala, Paul G. Fahey, Dmitry Kobak, Shalaka Mulherkar, Fabian H. Sinz, Stelios Papadopoulos, Zheng Huan Tan, Per Johnsson, Leonard Hartmanis, Shuang Li, R. Cotton, Kimberley F. Tolias, Rickard Sandberg, Philipp Berens, Xiaolong Jiang, Andreas S. Tolias
Software Mentions: 2
Published: over 4 years ago

10.7554/eLife.50491

Comprehensive transcriptome analysis of cochlear spiral ganglion neurons at multiple ages
Cited by: 39
Author(s): Chao Li, Xiang Li, Zhenghong Bi, Ken Sugino, Guangqin Wang, Tong Zhu, Zhiyong Liu
Software Mentions: 2
Published: almost 5 years ago

10.7554/eLife.67250

Cardiac pathologies in mouse loss of imprinting models are due to misexpression of H19 long noncoding RNA
Cited by: 6
Author(s): Ki-Sun Park, Beenish Rahat, Hyung Chul Lee, Zu‐Xi Yu, Jacob Noeker, Apratim Mitra, Connor M. Kean, Russell H. Knutsen, Danielle Springer, Claudia Gebert, Beth A. Kozel, Karl Pfeifer
Software Mentions: 2
Published: over 3 years ago

10.7554/eLife.40532

Downsizing the molecular spring of the giant protein titin reveals that skeletal muscle titin determines passive stiffness and drives longitudinal hypertrophy
Cited by: 55
Author(s): Ambjorn Brynnel, Yaeren Hernandez, Balázs Kiss, Johan Lindqvist, Maya Adler, Justin Kolb, Robbert van der Pijl, Jochen Gohlke, Joshua Strom, John E. Smith, Coen A.C. Ottenheijm, Henk Granzier
Software Mentions: 2
Published: almost 6 years ago

10.7554/eLife.30506

Chromatin accessibility underlies synthetic lethality of SWI/SNF subunits in ARID1A-mutant cancers
Cited by: 121
Author(s): Timothy W. R. Kelso, Devin K. Porter, Maria Luisa Amaral, Maxim N. Shokhirev, Chris Benner, Diana C. Hargreaves
Software Mentions: 2
Published: about 7 years ago

10.7554/eLife.19130

Cell culture-based profiling across mammals reveals DNA repair and metabolism as determinants of species longevity
Cited by: 61
Author(s): Siming Ma, Akhil Upneja, Andrzej T. Gałecki, Yi Miau Tsai, Charles F. Burant, Sasha Raskind, Quanwei Zhang, Zhengdong D. Zhang, Andrei Seluanov, Vera Gorbunova, Clary B. Clish, Richard A. Miller, Vadim N. Gladyshev
Software Mentions: 2
Published: about 8 years ago

10.7554/eLife.52676

Identification of a molecular basis for the juvenile sleep state
Cited by: 14
Author(s): Leela Chakravarti Dilley, Milán Szuperák, Naihua N. Gong, Charlette E. Williams, Ricardo Linares-Saldana, David S. Garbe, Mubarak Hussain Syed, Rajan Jain, Matthew S. Kayser
Software Mentions: 2
Published: over 4 years ago

10.7554/eLife.07938

Cross-talk between PRMT1-mediated methylation and ubiquitylation on RBM15 controls RNA splicing
Cited by: 114
Author(s): Li Zhang, Ngoc Tung Tran, Hairui Su, Rui Wang, Yuheng Lu, Haiping Tang, Sakae Aoyagi, Ailan Guo, Alireza Khodadadi‐Jamayran, Dewang Zhou, Kun Qian, Todd Hricik, Jocelyn Côté, Xiaosi Han, Wenping Zhou, Suparna Laha, Omar Abdel‐Wahab, Ross L. Levine, Glen D. Raffel, Yanyan Liu, Dongquan Chen, Haitao Li, Tim M. Townes, Hengbin Wang, Haiteng Deng, Y. George Zheng, Christina Leslie, Minkui Luo, Xinyang Zhao
Software Mentions: 2
Published: about 9 years ago

10.7554/eLife.60293

Phosphatidylcholines from Pieris brassicae eggs activate an immune response in Arabidopsis
Cited by: 30
Author(s): Elia Stahl, Théo Brillatz, Emerson Ferreira Queiroz, Laurence Marcourt, André Schmiesing, Olivier Hilfiker, Isabelle Riezman, Howard Riezman, Jean‐Luc Wolfender, Philippe Reymond
Software Mentions: 2
Published: about 4 years ago

10.7554/eLife.42530

Natural depletion of histone H1 in sex cells causes DNA demethylation, heterochromatin decondensation and transposon activation
Cited by: 51
Author(s): Shengbo He, Martin Vickers, Jingyi Zhang, Xiaoqi Feng
Software Mentions: 2
Published: over 5 years ago

10.7554/eLife.52504

Derivation of trophoblast stem cells from naïve human pluripotent stem cells
Cited by: 177
Author(s): Chen Dong, Mariana Beltcheva, Paul Gontarz, Bo Zhang, Pooja Popli, Laura A. Fischer, Shafqat Ali Khan, Kyoung Mi Park, Eun‐Ja Yoon, Xiaoyun Xing, Ramakrishna Kommagani, Ting Wang, Lilianna Solnica‐Krezel, Thorold W. Theunissen
Software Mentions: 2
Published: almost 5 years ago

10.7554/eLife.40806

Ovaries absent links dLsd1 to HP1a for local H3K4 demethylation required for heterochromatic gene silencing
Cited by: 24
Author(s): Yang Fu, Zhenghui Quan, Huanwei Huang, Minghui He, Xicheng Liu, Tao Cai, Rongwen Xi
Software Mentions: 2
Published: almost 6 years ago

10.7554/eLife.26116

The conserved RNA helicase YTHDC2 regulates the transition from proliferation to differentiation in the germline
Cited by: 151
Author(s): Alexis S. Bailey, Pedro J. Batista, Rebecca Gold, Y. Grace Chen, Dirk G. de Rooij, Howard Y. Chang, Margaret T. Fuller
Software Mentions: 2
Published: about 7 years ago

10.7554/eLife.60862

Reassessment of the involvement of Snord115 in the serotonin 2c receptor pathway in a genetically relevant mouse model
Cited by: 20
Author(s): Jade Hebras, Virginie Marty, Jean Personnaz, Pascale Mercier, Nicolai Krogh, Henrik Nielsen, Marion Aguirrebengoa, Hervé Seitz, Jean-Phillipe Pradere, Bruno P. Guiard, Jérôme Cavaillé
Software Mentions: 2
Published: about 4 years ago

10.7554/eLife.47261

The Tudor SND1 protein is an m6A RNA reader essential for replication of Kaposi’s sarcoma-associated herpesvirus
Cited by: 90
Author(s): Belinda Baquero-Pérez, Agne Antanaviciute, Ivaylo D Yonchev, Ian Carr, Stuart A. Wilson, Adrian Whitehouse
Software Mentions: 2
Published: about 5 years ago

10.7554/eLife.62232

Failures of nerve regeneration caused by aging or chronic denervation are rescued by restoring Schwann cell c-Jun
Cited by: 54
Author(s): Laura Wagstaff, Jose A. Gomez-Sanchez, Shaline V. Fazal, G. Otto, Alastair M. Kilpatrick, Kirolos Michael, Liam Y.N. Wong, Ki H., Mark Turmaine, John Svaren, Tessa Gordon, Peter Arthur‐Farraj, Sergio Velasco-Avilés, Hugo Cabedo, Cristina Benito, Rhona Mirsky, Kristján R. Jessen
Software Mentions: 2
Published: almost 4 years ago

10.7554/eLife.42940

eIF2B activator prevents neurological defects caused by a chronic integrated stress response
Cited by: 109
Author(s): Yao Liang Wong, Lauren LeBon, Ana M. Basso, Kathy L. Kohlhaas, Arthur L. Nikkel, Holly M. Robb, Diana L. Donnelly‐Roberts, Janani Prakash, Andrew M. Swensen, Nimrod D. Rubinstein, Sadagopan Krishnan, Fiona E. McAllister, Nicole V Haste, Jonathon O’Brien, Margaret Roy, Andrea Ireland, Jennifer M. Frost, Lei Shi, Stephan Riedmaier, Kathleen A. Martin, Michael J. Dart, Carmela Sidrauski
Software Mentions: 2
Published: almost 6 years ago

10.7554/eLife.11752

A new view of transcriptome complexity and regulation through the lens of local splicing variations
Cited by: 338
Author(s): Jorge Vaquero-Garcia, Alejandro Barrera, Matthew R. Gazzara, Juan González-Vallinas, Nicholas F. Lahens, John B. Hogenesch, Kristen W. Lynch, Yoseph Barash
Software Mentions: 2
Published: almost 9 years ago

10.7554/eLife.25605

Reciprocal analyses in zebrafish and medaka reveal that harnessing the immune response promotes cardiac regeneration
Cited by: 196
Author(s): Shih Lei Lai, Rubén Marín-Juez, Pedro Luís Moura, Carsten Kuenne, Jason Kuan Han Lai, Ayele Taddese Tsedeke, Stefan Guenther, Mario Looso, Didier Y. R. Stainier
Software Mentions: 2
Published: over 7 years ago

10.7554/eLife.63982

Fruitless mutant male mosquitoes gain attraction to human odor
Cited by: 32
Author(s): Nipun S. Basrur, Maria Elena De Obaldia, Takeshi Morita, Margaret Herre, Ricarda K von Heynitz, Yael N. Tsitohay, Leslie B. Vosshall
Software Mentions: 2
Published: almost 4 years ago

10.7554/eLife.64806

Anti-ferroptotic mechanism of IL4i1-mediated amino acid metabolism
Cited by: 50
Author(s): Leonie Zeitler, Alessandra Fiore, Claudia Meyer, Marion Russier, Gaia Zanella, Sabine Suppmann, Marco Gargaro, Sachdev S. Sidhu, Somasekar Seshagiri, Caspar Ohnmacht, Thomas Köcher, Francesca Fallarino, Andreas Linkermann, Peter J. Murray
Software Mentions: 2
Published: over 3 years ago

10.7554/eLife.27450

Molecular conservation of marsupial and eutherian placentation and lactation
Cited by: 28
Author(s): Michael W Guernsey, Edward B. Chuong, Guillaume Cornelis, Marilyn B. Renfree, Julie C. Baker
Software Mentions: 2
Published: about 7 years ago

10.7554/eLife.70557

3′HS1 CTCF binding site in human β-globin locus regulates fetal hemoglobin expression
Cited by: 5
Author(s): Pamela Himadewi, Xue Qing David Wang, Fan Feng, Haley Gore, Yushuai Liu, Li Yu, Ryo Kurita, Yukio Nakamura, Gerd P. Pfeifer, Jie Liu, Xiaotian Zhang
Software Mentions: 2
Published: about 3 years ago

10.7554/eLife.50561

MicroRNA-934 is a novel primate-specific small non-coding RNA with neurogenic function during early development
Cited by: 11
Author(s): Kanella Prodromidou, Ioannis S. Vlachos, Maria Gaitanou, Georgia Kouroupi, Artemis G. Hatzigeorgiou, Rebecca Matsas
Software Mentions: 2
Published: over 4 years ago

10.7554/eLife.54603

Coverage-dependent bias creates the appearance of binary splicing in single cells
Cited by: 32
Author(s): Carlos Fernando Buen Abad Najar, Nir Yosef, Liana F. Lareau
Software Mentions: 2
Published: over 4 years ago

10.7554/eLife.54659

Osterix-Cre marks distinct subsets of CD45- and CD45+ stromal populations in extra-skeletal tumors with pro-tumorigenic characteristics
Cited by: 9
Author(s): Biancamaria Ricci, Eric Tycksen, Hamza Celik, Jad I. Belle, Francesca Fontana, Roberto Civitelli, Roberta Faccio
Software Mentions: 2
Published: over 4 years ago

10.7554/eLife.30919

ketu mutant mice uncover an essential meiotic function for the ancient RNA helicase YTHDC2
Cited by: 118
Author(s): Devanshi Jain, M. Rhyan Puno, Cem Meydan, Nathalie Lailler, Christopher E. Mason, Christopher D. Lima, Kathryn V. Anderson, Scott Keeney
Software Mentions: 2
Published: almost 7 years ago

10.7554/eLife.30094

Dissection of affinity captured LINE-1 macromolecular complexes
Cited by: 59
Author(s): Martin S. Taylor, Ilya Altukhov, Kelly R. Molloy, Paolo Mita, Hua Jiang, Emily M. Adney, Aleksandra Wudzinska, Sana Badri, Dimitry D Ischenko, George Eng, Kathleen H. Burns, David Fenyö, Brian T. Chait, Dmitry Alexeev, Michael P. Rout, Jef D. Boeke, John LaCava
Software Mentions: 2
Published: almost 7 years ago

10.7554/eLife.50960

Comprehensive annotations of human herpesvirus 6A and 6B genomes reveal novel and conserved genomic features
Cited by: 30
Author(s): Yaara Finkel, Dominik Schmiedel, Julie Tai-Schmiedel, Aharon Nachshon, Roni Winkler, Martina Dobešová, Michal Schwartz, Ofer Mandelboim, Noam Stern-Ginossar
Software Mentions: 2
Published: almost 5 years ago

10.7554/eLife.36865

Pdgfra marks a cellular lineage with distinct contributions to myofibroblasts in lung maturation and injury response
Cited by: 119
Author(s): Rongbo Li, Ksenija Bernau, Nathan Sandbo, Jing Gu, Sebastian Preißl, Xin Sun
Software Mentions: 2
Published: about 6 years ago

10.7554/eLife.63972

HP1α is a chromatin crosslinker that controls nuclear and mitotic chromosome mechanics
Cited by: 57
Author(s): Amy R. Strom, Ronald Biggs, Edward J. Banigan, Xiaotao Wang, Katherine Chiu, Cameron Herman, Jimena Collado, Feng Yue, Joan C. Ritland Politz, Leah J. Tait, David Scalzo, Agnes Telling, Mark Groudine, Clifford P. Brangwynne, John F. Marko, Andrew D. Stephens
Software Mentions: 2
Published: over 3 years ago

10.7554/eLife.58172

Irisin directly stimulates osteoclastogenesis and bone resorption in vitro and in vivo
Cited by: 61
Author(s): Eben G. Estell, Phuong Le, Yosta Vegting, Hyeonwoo Kim, Christiane D. Wrann, Mary L. Bouxsein, Kenichi Nagano, Roland Baron, Bruce M. Spiegelman, Clifford J. Rosen
Software Mentions: 2
Published: over 4 years ago

10.7554/eLife.54501

Semiochemical responsive olfactory sensory neurons are sexually dimorphic and plastic
Cited by: 18
Author(s): Aashutosh Vihani, Xiaoyang Serene Hu, Sivaji Gundala, Sachiko Koyama, Eric Block, Hiroaki Matsunami
Software Mentions: 2
Published: about 4 years ago

10.7554/eLife.29605

A comparative transcriptomic analysis of replicating and dormant liver stages of the relapsing malaria parasite Plasmodium cynomolgi
Cited by: 55
Author(s): Annemarie Voorberg-van der Wel, Guglielmo Roma, Devendra Gupta, Sven Schuierer, Florian Nigsch, Walter Carbone, Anne‐Marie Zeeman, Boon Heng Lee, Sam Hofman, Bart W. Faber, Judith Knehr, Erica M. Pasini, Bernd Kinzel, Pablo Bifani, Ghislain M. C. Bonamy, Tewis Bouwmeester, Clemens H. M. Kocken, Thierry T. Diagana
Software Mentions: 2
Published: almost 7 years ago

10.7554/eLife.62387

Runx2-Twist1 interaction coordinates cranial neural crest guidance of soft palate myogenesis
Cited by: 21
Author(s): Xia Han, Jifan Feng, Tingwei Guo, Yong-Hwee Eddie Loh, Yuan Yuan, Thach-Vu Ho, Courtney Kyeong Cho, Jingyuan Li, Junjun Jing, Eva Janečková, Jinzhi He, Fei Pei, Jing Bi, Brian J. Song, Yang Chai
Software Mentions: 2
Published: almost 4 years ago

10.3390/ijms18040805

Radiogenomic Analysis of Oncological Data: A Technical Survey
Cited by: 97
Author(s): Mariarosaria Incoronato, Marco Aiello, Teresa Infante, Carlo Cavaliere, Anna Grimaldi, Peppino Mirabelli, Serena Monti, Marco Salvatore
Software Mentions: 2
Published: over 7 years ago

10.3390/ijms18061110

Validation of Splicing Events in Transcriptome Sequencing Data
Cited by: 6
Author(s): Wolfgang Kaisers, Johannes Ptok, Holger Schwender, Heiner Schaal
Software Mentions: 2
Published: over 7 years ago

10.3390/ijms19051485

PIMT/NCOA6IP Deletion in the Mouse Heart Causes Delayed Cardiomyopathy Attributable to Perturbation in Energy Metabolism
Cited by: 8
Author(s): Yuzhi Jia, Ning Liu, Navin Viswakarma, Ruya Sun, Mathew J. Schipma, Shu Meng, Edward B. Thorp, Yashpal S. Kanwar, Bayar Thimmapaya, Janardan K. Reddy
Software Mentions: 2
Published: over 6 years ago

10.3390/ijms19071894

Preliminary RNA-Seq Analysis of Long Non-Coding RNAs Expressed in Human Term Placenta
Cited by: 22
Author(s): Marta Majewska, Aleksandra Lipka, Łukasz Paukszto, J Jastrzebski, Marek Gowkielewicz, Marcin Jóźwik, Mariusz Majewski
Software Mentions: 2
Published: over 6 years ago

10.3390/ijms19071822

Decryption of Active Constituents and Action Mechanism of the Traditional Uighur Prescription (BXXTR) Alleviating IMQ-Induced Psoriasis-Like Skin Inflammation in BALB/c Mice
Cited by: 17
Author(s): Xiaoyang Pang, Ke Zhang, Jian Huang, Hangyu Wang, Le Gao, Tao Wang, Yingnan Sun, Long Chen, Jinhui Wang
Software Mentions: 2
Published: over 6 years ago

10.3390/ijms19082359

Non-Coding Transcriptome Maps across Twenty Tissues of the Korean Black Chicken, Yeonsan Ogye
Cited by: 5
Author(s): Hyosun Hong, Han-Ha Chai, Kyoungwoo Nam, Dajeong Lim, Kyung-Tai Lee, Yoon Jung, Chang-Yeon Cho, Jin‐Wu Nam
Software Mentions: 2
Published: over 6 years ago

10.3390/ijms20081955

miR-128 Restriction of LINE-1 (L1) Retrotransposition Is Dependent on Targeting hnRNPA1 mRNA
Cited by: 11
Author(s): Lianna Fung, Herlinda Guzman, Evgueni A. Sevrioukov, Adam Idica, Eddie Park, Aurore Bochnakian, Iben Daugaard, Douglas Jury, A Mortazavi, Dimitrios G. Zisoulis, Irene M. Pedersen
Software Mentions: 2
Published: over 5 years ago

10.3390/ijms20143457

Unravelling the Role of Trophoblastic-Derived Extracellular Vesicles in Regulatory T Cell Differentiation
Cited by: 25
Author(s): Árpád Ferenc Kovács, Nóra Fekete, Lilla Turiák, András Ács, László Kőhidai, Edit I. Buzás, Éva Pállinger
Software Mentions: 2
Published: over 5 years ago

10.3390/ijms20225539

Changes in Calcium Homeostasis and Gene Expression Implicated in Epilepsy in Hippocampi of Mice Overexpressing ORAI1
Cited by: 12
Author(s): Łukasz Majewski, Bartosz Wojtaś, Filip Maciąg, Jacek Kuźnicki
Software Mentions: 2
Published: about 5 years ago

10.3390/ijms20225706

CRISPR/Cas9-Mediated Knock-Out of KrasG12D Mutated Pancreatic Cancer Cell Lines
Cited by: 22
Author(s): Eva Lentsch, Lifei Li, Susanne Pfeffer, Arif B. Ekici, Leila Taher, Christian Pilarsky, Robert Grützmann
Software Mentions: 2
Published: about 5 years ago

10.3390/ijms20236083

Dual RNA Sequencing of Vitis vinifera during Lasiodiplodia theobromae Infection Unveils Host–Pathogen Interactions
Cited by: 22
Author(s): Micael F. M. Gonçalves, R. Nunes, Laurentijn Tilleman, Yves Van de Peer, Dieter Deforce, Filip Van Nieuwerburgh, Ana Cristina Esteves, Artur Alves
Software Mentions: 2
Published: almost 5 years ago

10.3390/ijms21031086

Differences in the Inflammatory Response of White Adipose Tissue and Adipose-Derived Stem Cells
Cited by: 5
Author(s): Sara Taha, Elias Volkmer, E. Haas, Paolo Alberton, Tobias Straub, Diana David‐Rus, Attila Aszódi, Riccardo E. Giunta, Maximilian Michael Saller
Software Mentions: 2
Published: almost 5 years ago

10.3390/ijms21041455

Evaluation of Transcriptomic Regulations behind Metabolic Syndrome in Obese and Lean Subjects
Cited by: 10
Author(s): Magdalena Paczkowska–Abdulsalam, Magdalena Niemira, Agnieszka Bielska, Anna Szałkowska, Beata Anna Raczkowska, Sini Junttila, Attila Gyenesei, Edyta Adamska-Patruno, Katarzyna Maliszewska, Łukasz Szczerbiński, Adam Krętowski
Software Mentions: 2
Published: almost 5 years ago

10.3390/ijms21061965

Tenogenic Contribution to Skeletal Muscle Regeneration: The Secretome of Scleraxis Overexpressing Mesenchymal Stem Cells Enhances Myogenic Differentiation In Vitro
Cited by: 6
Author(s): Maximilian Strenzke, Paolo Alberton, Attila Aszódi, Denitsa Docheva, E. Haas, Christian Kammerlander, Wolfgang Böcker, Maximilian Michael Saller
Software Mentions: 2
Published: over 4 years ago

10.3390/ijms21062065

The Beta Subunit of Nascent Polypeptide Associated Complex Plays A Role in Flowers and Siliques Development of Arabidopsis thaliana
Cited by: 2
Author(s): Jan Fíla, Božena Klodová, David Potěšil, Miloslav Juříček, Petr Šesták, Zbyněk Zdráhal, David Honys
Software Mentions: 2
Published: over 4 years ago

10.3390/ijms21113794

Leptin Signaling Affects Survival and Chemoresistance of Estrogen Receptor Negative Breast Cancer
Cited by: 13
Author(s): Crystal C. Lipsey, Adriana Harbuzariu, Robert W. Robey, Lyn M. Huff, Michael M. Gottesman, Ruben R. Gonzalez-Perez
Software Mentions: 2
Published: over 4 years ago

10.1186/s12974-019-1433-4

Inflammatory, regulatory, and autophagy co-expression modules and hub genes underlie the peripheral immune response to human intracerebral hemorrhage
Cited by: 49
Author(s): Marc Durocher, Bradley P. Ander, Glen C. Jickling, Farah Hamade, Heather Hull, Bodie Knepp, Da Zhi Liu, Xinhua Zhan, Anh Tuấn Trần, Xiyuan Cheng, Kwan Ng, Alan Yee, Frank R. Sharp, Boryana Stamova
Software Mentions: 2
Published: over 5 years ago

10.1186/s12974-018-1166-9

Inhibition of 2-AG hydrolysis differentially regulates blood brain barrier permeability after injury
Cited by: 34
Author(s): Justin R. Piro, Georgette L. Suidan, Jie Quan, YeQing Pi, Sharon O'Neill, Marissa C. Ilardi, Nikolay Pozdnyakov, Thomas A. Lanz, Hualin Simon Xi, Robert D. Bell, Tarek A. Samad
Software Mentions: 2
Published: over 6 years ago

10.1523/JNEUROSCI.2673-17.2018

Loss of eIF4E Phosphorylation Engenders Depression-like Behaviors via Selective mRNA Translation
Cited by: 52
Author(s): Inês S. Amorim, Sonal Kedia, Stella Kouloulia, Konstanze Simbriger, Ilse Gantois, Seyed Mehdi Jafarnejad, Yupeng Li, Agniete Kampaite, Tine Pooters, Nicola Romanò, Christos G. Gkogkas
Software Mentions: 2
Published: almost 7 years ago

10.1007/s13365-020-00927-z

Brain tissue transcriptomic analysis of SIV-infected macaques identifies several altered metabolic pathways linked to neuropathogenesis and poly (ADP-ribose) polymerases (PARPs) as potential therapeutic targets
Cited by: 6
Author(s): Carla Mavian, Andrea Ramirez-Mata, James Jarad Dollar, David J. Nolan, Melanie N. Cash, Kevin White, Shannan N. Rich, Brittany Rife Magalis, Simone Marini, Mattia Prosperi, David Moraga Amador, Alberto Riva, Kenneth C. Williams, Marco Salemi
Software Mentions: 2
Published: almost 4 years ago

10.1016/j.isci.2021.102713

A single cell transcriptomics map of paracrine networks in the intrinsic cardiac nervous system
Cited by: 12
Author(s): Alison Moss, Shaina Robbins, Sirisha Achanta, Lakshmi Kuttippurathu, Scott Turick, Sean Nieves, Peter Hanna, Elizabeth H. Smith, Donald B. Hoover, Jin Chen, Zixi Cheng, Jeffrey L. Ardell, Kalyanam Shivkumar, James S. Schwaber, Rajanikanth Vadigepalli
Software Mentions: 2
Published: over 3 years ago

10.1016/j.isci.2021.102934

Thermoelectric degrees of freedom determining thermoelectric efficiency
Cited by: 13
Author(s): Byungki Ryu, Jaywan Chung, Su-Dong Park
Software Mentions: 2
Published: about 3 years ago

10.1016/j.isci.2021.103093

Ezh2 harnesses the intranuclear actin cytoskeleton to remodel chromatin in differentiating Th cells
Cited by: 5
Author(s): Moran Titelbaum, Boris Brant, Daniel Baumel, Alina Burstein-Willensky, Shira Perez, Yiftah Barsheshet, Orly Avni
Software Mentions: 2
Published: about 3 years ago

10.18632/oncotarget.8183

Two classes of intrahepatic cholangiocarcinoma defined by relative abundance of mutations and copy number alterations
Cited by: 9
Author(s): Young‐Ho Kim, Eun-Kyung Hong, Sun‐Young Kong, Sung‐Sik Han, Seoung-Hoon Kim, Je-Keun Rhee, Soon-Jung Hwang, Sang-Jae Park, Tae Min Kim
Software Mentions: 2
Published: over 8 years ago

10.18632/oncotarget.15237

Metabolic heterogeneity signature of primary treatment-naïve prostate cancer
Cited by: 16
Author(s): Dong Lin, Susan Ettinger, Sifeng Qu, Hui Xue, Noushin Nabavi, Si‐Sun Choi, Robert H. Bell, Fan Mo, Anne Haegert, Peter W. Gout, Neil Fleshner, Martin Gleave, Michael Pollak, Colin C. Collins, Yuzhuo Wang
Software Mentions: 2
Published: almost 8 years ago

10.18632/oncotarget.18117

Notch signaling regulates metabolic heterogeneity in glioblastoma stem cells
Cited by: 55
Author(s): N. Sumru Bayın, Joshua D. Frenster, Rajeev Sen, Sheng Si, Aram S. Modrek, Nataliya Galifianakis, Igor Dolgalev, Valerio Ortenzi, Irineu Illa-Bochaca, Anadjeet Khahera, Jonathan Serrano, Luis Chiriboga, David Zagzag, John G. Golfinos, Werner Doyle, Aristotelis Tsirigos, Adriana Heguy, Mitchell Chesler, Mary Helen Barcellos‐Hoff, Matija Snuderl, Dimitris G. Placantonakis
Software Mentions: 2
Published: over 7 years ago

10.18632/oncotarget.20260

The conjugated antimetabolite 5-FdU-ECyd and its cellular and molecular effects on platinum-sensitive vs. -resistant ovarian cancer cells in vitro
Cited by: 5
Author(s): Sarah Schott, Pauline Wimberger, Barbara Klink, Konrad Grützmann, Julian Puppe, Ulrike Sophie Wauer, Daniel Martin Klotz, Evelin Schröck, Jan Dominik Kuhlmann
Software Mentions: 2
Published: over 7 years ago

10.18632/oncotarget.19283

Aberrantly activated Cox-2 and Wnt signaling interact to maintain cancer stem cells in glioblastoma
Cited by: 32
Author(s): Megan Wu, Jennifer Guan, Chris Li, Simon J Gunter, Labeeba Nusrat, S. C. Ng, Karan Dhand, Cindi M. Morshead, Albert Kim, Sunit Das
Software Mentions: 2
Published: over 7 years ago

10.18632/oncotarget.22159

Regulatory T cells characterized by low Id3 expression are highly suppressive and accumulate during chronic infection
Cited by: 7
Author(s): Katharina S. Rauch, Miriam Hils, Alexandra J. Menner, Mikael Sigvardsson, Susana Minguet, Peter Aichele, Christian Schachtrup, Christian Schachtrup
Software Mentions: 2
Published: about 7 years ago

10.18632/oncotarget.22867

Genomic landscape of colitis-associated cancer indicates the impact of chronic inflammation and its stratification by mutations in the Wnt signaling
Cited by: 32
Author(s): Masashi Fujita, Nagahide Matsubara, Ikuo Matsuda, Kazuhiro Maejima, Ayako Oosawa, Tomoki Yamano, Akihiro Fujimoto, Mayuko Furuta, Kaoru Nakano, Aya Oku‐Sasaki, Hiroko Tanaka, Yuichi Shiraishi, Raúl Nicolás Mateos, Kenta Nakai, Satoru Miyano, Naohiro Tomita, Seiichi Hirota, Hiroki Ikeuchi, Hidewaki Nakagawa
Software Mentions: 2
Published: almost 7 years ago

10.18632/oncotarget.24341

Methotrexate sensitizes drug-resistant metastatic melanoma cells to <i>BRAF</i> V600E inhibitors dabrafenib and encorafenib
Cited by: 8
Author(s): Kayleigh C. Ross, Kevin F Chin, Dae-Hwan Kim, Christopher D. Marion, Timothy Yen, Vikram Bhattacharjee
Software Mentions: 2
Published: almost 7 years ago

10.18632/oncotarget.24422

Human tripartite motif protein 52 is required for cell context-dependent proliferation
Cited by: 11
Author(s): Stefan Benke, Benedikt Agerer, Linda Haas, Martin Stöger, Alexander Lercher, Lisa Gabler, Izabella Kiss, Sara Scinicariello, Walter Berger, Andréas Bergthaler, Anna C. Obenauf, Gijs A. Versteeg
Software Mentions: 2
Published: almost 7 years ago

10.18632/oncotarget.24862

ONC201 kills breast cancer cells<i>in vitro</i>by targeting mitochondria
Cited by: 70
Author(s): Yoshimi Endo Greer, Natalie Porat-Shliom, Kunio Nagashima, Christina H. Stuelten, Dan Crooks, Vishal N. Kopardé, Sarah L. Gilbert, Celia Islam, Ashley Ubaldini, Yun Ji, Luca Gattinoni, Ferri Soheilian, Xiantao Wang, Markus Hafner, Jyoti Shetty, Bao Tran, Parthav Jailwala, Maggie Cam, Martin Lang, Donna Voeller, William C. Reinhold, Vinodh N. Rajapakse, Yves Pommier, Roberto Weigert, W. Marston Linehan, Stanley Lipkowitz
Software Mentions: 2
Published: over 6 years ago

10.18632/oncotarget.24808

Transcriptome profiling of the interconnection of pathways involved in malignant transformation and response to hypoxia
Cited by: 1
Author(s): Frida Danielsson, Erik Fasterius, Devin P. Sullivan, Linnea Hases, Kemal Sanli, Cheng Cheng Zhang, Adil Mardinoğlu, Cristina Al-Khalili, Mikael Huss, Mathias Uhlén, Cecilia Williams, Emma Lundberg
Software Mentions: 2
Published: over 6 years ago

10.18632/oncotarget.25188

The critical role that STAT3 plays in glioma-initiating cells: STAT3 addiction in glioma
Cited by: 41
Author(s): Debolina Ganguly, Meiyun Fan, Chuan Yang, Blazej Zbytek, David Finkelstein, Martine F. Roussel, Lawrence M. Pfeffer
Software Mentions: 2
Published: over 6 years ago

10.18632/oncotarget.27234

<b>Assessment of circularized E7 RNA, GLUT1, and PD-L1 in anal squamous cell carcinoma</b>
Cited by: 20
Author(s): Bahir Chamseddin, Eunice E. Lee, Jiwoong Kim, Xiaowei Zhan, Rong Yang, Kathleen M. Murphy, Cheryl Lewis, Gregory A. Hosler, Suntrea T.G. Hammer, Richard C. Wang
Software Mentions: 2
Published: about 5 years ago

10.18632/oncotarget.27511

hPCL3S promotes proliferation and migration of androgen-independent prostate cancer cells
Cited by: 5
Author(s): Souhila Abdelfettah, Gaylor Boulay, Marion Dubuissez, Nathalie Spruyt, Sara P. Garcia, Shruthi Rengarajan, Ingrid Loison, Xavier Leroy, Miguel N. Rivera, Dominique Leprince
Software Mentions: 2
Published: over 4 years ago

10.18632/oncotarget.27637

Inhibition of the RUNX1-CBFβ transcription factor complex compromises mammary epithelial cell identity: a phenotype potentially stabilized by mitotic gene bookmarking
Cited by: 6
Author(s): Joshua T. Rose, Eliana Moskovitz, Joseph R. Boyd, Jonathan A. R. Gordon, Nicole A. Bouffard, Andrew J. Fritz, Anuradha Illendula, John H. Bushweller, Jane B. Lian, Janet L. Stein, Sayyed K. Zaidi
Software Mentions: 2
Published: over 4 years ago

10.18632/oncotarget.27679

Induction of phenotypic changes in HER2-postive breast cancer cells <i>in vivo</i> and <i>in vitro</i>
Cited by: 2
Author(s): Anastasia Frank-Kamenetskii, Julia Mook, Meredith Reeves, Corinne A. Boulanger, Thomas J. Meyer, Lauren E. Ragle, H. Caroline Jordan, Gilbert H. Smith, Brian W. Booth
Software Mentions: 2
Published: over 4 years ago

10.18632/oncotarget.27693

Differentially expressed full-length, fusion and novel isoforms transcripts-based signature of well-differentiated keratinized oral squamous cell carcinoma
Cited by: 9
Author(s): Neetu Singh, Dinesh Kumar Sahu, Ratnesh Kumar Tripathi, Archana Mishra, Hari Shyam, Pratap Shankar, Mayank Jain, Nawazish Alam, Anil Kumar, Abhishek Mishra, Rebecca Chowdhry, Anjana Singh, Sudeep Gupta, Divya Mehrotra, Preeti Agarwal, Madhu Mati Goel, Arun Chaturvedi, Saurabh Agarwal, Manish Kumar Bajpai, Devendra K. Gupta, Madan Lal Brahma Bhatt, Ravi Kant
Software Mentions: 2
Published: over 4 years ago

10.18632/oncotarget.27906

Characterization of the inflammatory microenvironment and hepatic macrophage subsets in experimental hepatocellular carcinoma models
Cited by: 10
Author(s): Helena Degroote, Sander Lefere, Astrid Vandierendonck, Bart Vanderborght, Tim Meese, Filip Van Nieuwerburgh, Xavier Verhelst, Anja Geerts, Hans Van Vlierberghe, Lindsey Devisscher
Software Mentions: 2
Published: over 3 years ago

10.18632/oncotarget.27955

Genome wide DNA methylation landscape reveals glioblastoma’s influence on epigenetic changes in tumor infiltrating CD4+ T cells
Cited by: 13
Author(s): Marpe Bam, Sreenivasulu Chintala, Kaleigh Fetcko, Brooke Carmen Williamsen, Seema Siraj, Sheng Liu, Jun Wan, Xiaoling Xuei, Yunlong Liu, Adam Leibold, Mahua Dey
Software Mentions: 2
Published: over 3 years ago

10.18632/oncotarget.28056

The antitumoral effects of chemerin are independent from leukocyte recruitment and mediated by inhibition of neoangiogenesis
Cited by: 7
Author(s): Ingrid Dubois-Vedrenne, Diana D.A.D. Al Delbany, Olivier De Henau, Virginie Robert, Maxime Vernimmen, Francina Langa, Anne Lefort, Frédérick Libert, Valérie Wittamer, Marc Parmentier
Software Mentions: 2
Published: about 3 years ago

10.3390/jpm11050330

The Quandary of DNA-Based Treatment Assessment in De Novo Metastatic Prostate Cancer in the Era of Precision Oncology
Cited by: 1
Author(s): Sigve Nakken, Wolfgang Lilleby, Marta D. Switlyk, Karen E. Knudsen, Oscar Lilleby, Sen Zhao, Fatemeh Kaveh, Per Olaf Ekstrøm, Alfonso Urbanucci, Eivind Hovig
Software Mentions: 2
Published: over 3 years ago

10.1186/s13023-021-01679-7

Proteomics analysis of a human brain sample from a mucolipidosis type IV patient reveals pathophysiological pathways
Cited by: 10
Author(s): Ayelet Vardi, Amir Pri-Or, Noa Wigoda, Yulia Grishchuk, Anthony H. Futerman
Software Mentions: 2
Published: almost 4 years ago

10.1128/JVI.02102-20

Segment-Specific Kinetics of mRNA, cRNA, and vRNA Accumulation during Influenza Virus Infection
Cited by: 21
Author(s): Thu T Phan, Elizabeth J. Fay, Zion Lee, Stephanie L. Aron, Wei Shou Hu, Ryan A. Langlois
Software Mentions: 2
Published: over 3 years ago

10.1128/JVI.00319-20

Loss of the Nuclear Protein RTF2 Enhances Influenza Virus Replication
Cited by: 3
Author(s): Bing Shao Chia, Bo Li, Ang Cui, Thomas Eisenhaure, Raktima Raychowdhury, David Lieb, Nir Hacohen
Software Mentions: 2
Published: about 4 years ago

10.1186/s12967-018-1578-4

PBMC fixation and processing for Chromium single-cell RNA sequencing
Cited by: 95
Author(s): Jinguo Chen, Foo Cheung, Rongye Shi, Huizhi Zhou, Wenrui Lu
Software Mentions: 2
Published: over 6 years ago

10.1186/s12967-017-1350-1

Transforming growth factor beta (TGF-β) in adolescent chronic fatigue syndrome
Cited by: 14
Author(s): Vegard Bruun Wyller, Chinh Bkrong Nguyen, Judith Krey Ludviksen, Tom Eirik Mollnes
Software Mentions: 2
Published: almost 7 years ago

10.1155/2019/9526725

Characterization and Validation of an “Acute Aerobic Exercise Load” as a Tool to Assess Antioxidative and Anti-inflammatory Nutrition in Healthy Subjects Using a Statistically Integrated Approach in a Comprehensive Clinical Trial
Cited by: 1
Author(s): Youjin Kim, Sungkyoung Choi, Sung Young Lee, Saejong Park, Ji Yeon Kim, Taesung Park, Oran Kwon
Software Mentions: 2
Published: about 5 years ago

10.1523/ENEURO.0475-18.2019

Molecular Profiling Defines Evolutionarily Conserved Transcription Factor Signatures of Major Vestibulospinal Neuron Groups
Cited by: 19
Author(s): Anders Lunde, Benjamin W. Okaty, Susan M. Dymecki, Joel C. Glover
Software Mentions: 2
Published: almost 6 years ago

10.1523/ENEURO.0166-21.2021

SCD Inhibition Protects from α-Synuclein-Induced Neurotoxicity But Is Toxic to Early Neuron Cultures
Cited by: 7
Author(s): Justin W. Nicholatos, Joost Groot, Shekhar Dhokai, David Tran, Lori Hrdlicka, Thomas M. Carlile, Melissa Bennion, Isin Dalkilic-Liddle, Warren D. Hirst, Andreas Weihofen
Software Mentions: 2
Published: over 3 years ago

10.1523/ENEURO.0171-21.2021

Glycogen Synthase Kinase 3 Regulates the Genesis of Displaced Retinal Ganglion Cells3
Cited by: 5
Author(s): Elena Kisseleff, Robin Vigouroux, Catherine Hottin, Sophie Lourdel, Leah Thomas, Palak Shah, Alain Chédotal, Muriel Perron, Anand Swaroop, Jérôme E. Roger
Software Mentions: 2
Published: about 3 years ago

10.1523/ENEURO.0358-20.2020

Posttranslational Modification of Sox11 Regulates RGC Survival and Axon Regeneration
Cited by: 16
Author(s): Kun-Che Chang, Minjuan Bian, Xin Xia, Ankush Madaan, Catalina Sun, Qizhao Wang, Liang Li, Michael Nahmou, Takahiko Noro, Satoshi Yokota, Joana Galvão, Alexander Kreymerman, Bogdan Tanasă, Yang Hu, Jeffrey L. Goldberg
Software Mentions: 2
Published: almost 4 years ago